Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 166 of 185
Found at i:50787099 original size:132 final size:132
Alignment explanation
Indices: 50786956--50787953 Score: 1428
Period size: 132 Copynumber: 7.6 Consensus size: 132
50786946 ATCTGCTCCG
* * * * * * * *
50786956 CTTGGAAAGATAAGATTTACCGTCTTTGATCTGCTTCACTACTGCCTAAGGAGACAGGATCTACA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* * *
50787021 ATATTCAACCCACTCCACTGCTGCTCAGGGAGATAGGATTAATGGCTTAAATCTGCTTCTCCACT
66 ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
50787086 AT
131 AT
* * *
50787088 CTTAGGAAGATAAGATTTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* *
50787153 ATCTTCAACCTACTCCACAGCTGCTTAGGGAGATAGGACTAATGG-TTCAAATCTGCTTCTCCAC
66 ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTT-AAATCTGCTTCTCCAC
50787217 TAT
130 TAT
* *
50787220 CTTGGGAAGATAAGATTCACCATGTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* * * *
50787285 ATCTTCAACCTACTCTACTGCTCCTCAGGGAGATAGGACTAATGGCCTAAATCTGCTTCTCCATT
66 ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
50787350 AT
131 AT
* * *
50787352 CTTGGGAAGATAAGATTCACCAT-TTTCGATCTGCTCTACTATTGCTTAGGGAGATAGAATCTGC
1 CTTGGGAAGATAAGATTCACCATCTTT-GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGC
* * *
50787416 AATCTTCAACCTACTCCACTGCTGCTTAGGGAGATAGGATTAATGACTTAAATCTGCTTCTCCAC
65 AATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
50787481 TAT
130 TAT
* * * *
50787484 CTTGGGAAGATAAGATTCGCCGTCTTTCATCTGCTCCACTACTGCTTAGGGACACAGAATCTGCA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* * * * *
50787549 ATCTTCAACCTACTCCACTGGTGTTCAAGGAGATAGGACTAATGGCCTAAATATGCTTCTCCACT
66 ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
50787614 AT
131 AT
* * * * *
50787616 CTTGGGAAGATAAGATTCACCATTTTTGATCTGCTCCACTATTGCTTAGGGAGATAAAACCTGCA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
50787681 ATCTTCAACCTAC-CCTACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
66 ATCTTCAACCTACTCC-ACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
50787745 TAT
130 TAT
* * * *
50787748 CTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGTA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
** * * *
50787813 ATCTTCAACCTACTCCACTGCTATTCAGGGAGATATGATTAATGGCTTAAATCTACTTC-CCGAC
66 ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCC-AC
*
50787877 GAT
130 TAT
* * * *
50787880 CTTGGGAAGATAAGATTCGCCATCTTCGATCTGCTCTACTACTGCTCAGGGAGACAGAATCTGCA
1 CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
50787945 ATCTTCAAC
66 ATCTTCAAC
50787954 GGTTTATTCT
Statistics
Matches: 777, Mismatches: 82, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
131 8 0.01
132 763 0.98
133 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CTTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
ATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
AT
Found at i:50788472 original size:12 final size:12
Alignment explanation
Indices: 50788455--50788479 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50788445 TGACTACAAA
50788455 ATCTGAAGGGAT
1 ATCTGAAGGGAT
50788467 ATCTGAAGGGAT
1 ATCTGAAGGGAT
50788479 A
1 A
50788480 GTCTCAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (12 bp):
ATCTGAAGGGAT
Found at i:50790917 original size:6 final size:6
Alignment explanation
Indices: 50790900--50790959 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
50790890 ATATAAAAAT
* * * * *
50790900 ATAATA ACAATA GTAATA ATCATA ATAATA ATAATA GTAATA ATATTA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* *
50790948 ACAATA GTAATA
1 ATAATA ATAATA
50790960 CTAGTAATGA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (6 bp):
ATAATA
Found at i:50790927 original size:9 final size:9
Alignment explanation
Indices: 50790900--50790959 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
50790890 ATATAAAAAT
*
50790900 ATAATAACA
1 ATAATAATA
*
50790909 ATAGTAATA
1 ATAATAATA
*
50790918 ATCATAATA
1 ATAATAATA
50790927 ATAATAATA
1 ATAATAATA
*
50790936 GTAATAATA
1 ATAATAATA
* *
50790945 TTAACAATA
1 ATAATAATA
*
50790954 GTAATA
1 ATAATA
50790960 CTAGTAATGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (9 bp):
ATAATAATA
Found at i:50790942 original size:18 final size:18
Alignment explanation
Indices: 50790892--50790959 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
50790882 ATAAATTGAT
* *
50790892 ATAAAAATA-TAATAACA
1 ATAATAATAGTAATAATA
* * *
50790909 ATAGTAATAATCATAATA
1 ATAATAATAGTAATAATA
50790927 ATAATAATAGTAATAATA
1 ATAATAATAGTAATAATA
* *
50790945 TTAACAATAGTAATA
1 ATAATAATAGTAATA
50790960 CTAGTAATGA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
17 7 0.17
18 34 0.83
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAATAATAGTAATAATA
Found at i:50790964 original size:9 final size:9
Alignment explanation
Indices: 50790921--50790967 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
50790911 AGTAATAATC
*
50790921 ATAATAATA
1 ATAATAGTA
50790930 ATAATAGTA
1 ATAATAGTA
*
50790939 ATAATATTA
1 ATAATAGTA
*
50790948 ACAATAGTA
1 ATAATAGTA
*
50790957 ATACTAGTA
1 ATAATAGTA
50790966 AT
1 AT
50790968 GAAGATTAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (9 bp):
ATAATAGTA
Found at i:50791050 original size:4 final size:4
Alignment explanation
Indices: 50791043--50791069 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
50791033 GGAGTAAGTA
50791043 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
50791070 ACATTAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:50795070 original size:34 final size:34
Alignment explanation
Indices: 50795031--50795105 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
50795021 AACACATATC
* *
50795031 AAGCATGACT-TATGCTAATAAATTGATCTGTTAT
1 AAGCAT-ACTATATGCTAATAAATCGAACTGTTAT
* * *
50795065 AAGCATACTATTTGCTATTATATCGAACTGTTAT
1 AAGCATACTATATGCTAATAAATCGAACTGTTAT
50795099 AAGCATA
1 AAGCATA
50795106 TTGATTGTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 3 0.09
34 32 0.91
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (34 bp):
AAGCATACTATATGCTAATAAATCGAACTGTTAT
Found at i:50795293 original size:45 final size:45
Alignment explanation
Indices: 50795238--50795346 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
50795228 TATCTGCAAA
* * ** * *
50795238 ATTTGTTGTGTATCCACAGTCAAAGGCAGGTTCCATTTACGGGTT
1 ATTTGCTGTGTATCCACAGGCAAAGGCAAATTCCATCTACGAGTT
* *
50795283 ATTTGCTGTGTATCCACAGGCAGAGGCAAATTCCATCTGCGAGTT
1 ATTTGCTGTGTATCCACAGGCAAAGGCAAATTCCATCTACGAGTT
*
50795328 ATTTGCTATGTAATCCACA
1 ATTTGCTGTGT-ATCCACA
50795347 ACCAGAGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 47 0.87
46 7 0.13
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (45 bp):
ATTTGCTGTGTATCCACAGGCAAAGGCAAATTCCATCTACGAGTT
Found at i:50796435 original size:19 final size:18
Alignment explanation
Indices: 50796398--50796440 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
50796388 ACCAAAAAAT
** *
50796398 ATTTTAAATTTATTTTTG
1 ATTTTAAATAAATTATTG
50796416 AGTTTTAAATAAATTATTG
1 A-TTTTAAATAAATTATTG
50796435 ATTTTA
1 ATTTTA
50796441 GTTTAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (18 bp):
ATTTTAAATAAATTATTG
Found at i:50800123 original size:3 final size:3
Alignment explanation
Indices: 50800117--50800143 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
50800107 AAAATTATTA
50800117 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
50800144 ATTTCACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:50802391 original size:45 final size:44
Alignment explanation
Indices: 50802312--50802443 Score: 108
Period size: 45 Copynumber: 3.0 Consensus size: 44
50802302 GCAGATTCTT
* ** *
50802312 ATATGAGGACTCGTACATGCGAATTTGTATAAGAAGA-TTCATAG
1 ATATGAGGACTCATACATGCGAATTCATAGAAGAA-ACTTCATAG
*
50802356 ATATGGAGGACTCATACATGC-AGATTCATAGAAGAAACTTCATGG
1 ATAT-GAGGACTCATACATGCGA-ATTCATAGAAGAAACTTCATAG
* * * * *
50802401 ATAT-AGCAGATTCAAACATACGAATACATAAAAGAAACTTCAT
1 ATATGAG--GACTCATACATGCGAATTCATAGAAGAAACTTCAT
50802444 GAACATAGCG
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.03
44 6 0.08
45 63 0.88
46 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (44 bp):
ATATGAGGACTCATACATGCGAATTCATAGAAGAAACTTCATAG
Found at i:50804760 original size:13 final size:13
Alignment explanation
Indices: 50804744--50804769 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50804734 AGTTGGGTAA
50804744 GGTAAAAAGGGAG
1 GGTAAAAAGGGAG
50804757 GGTAAAAAGGGAG
1 GGTAAAAAGGGAG
50804770 ATAGTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.46, T:0.08
Consensus pattern (13 bp):
GGTAAAAAGGGAG
Found at i:50810461 original size:27 final size:27
Alignment explanation
Indices: 50810431--50810497 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
50810421 AGGGTTTTTG
50810431 ATTGGCGGCACCAAAGGTGCC-TAACTA
1 ATTGGCGGCACCAAAGGTGCCAT-ACTA
* *
50810458 ATTGGCGGCACCGATGGTGCCATACTA
1 ATTGGCGGCACCAAAGGTGCCATACTA
*
50810485 GTTGGCGGCACCA
1 ATTGGCGGCACCA
50810498 TTGGCGGGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCATACTA
Found at i:50810734 original size:3 final size:3
Alignment explanation
Indices: 50810726--50810778 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
50810716 TTTTAGTTAG
* *
50810726 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
50810774 TAT TA
1 TAT TA
50810779 AGATGTTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:50813730 original size:37 final size:35
Alignment explanation
Indices: 50813664--50813757 Score: 95
Period size: 37 Copynumber: 2.7 Consensus size: 35
50813654 TTACCTTTTT
*
50813664 TTTCTTTTTTTTC-CTTCCTTCCCTCTTCTTCTTC
1 TTTCTTTTTTTTCTCTTCCTTCCATCTTCTTCTTC
*
50813698 TTTCTTTTTTTTTCTCTTCGCTTCTCAT-TTCTTTTTC
1 TTTC-TTTTTTTTCTCTTC-CTTC-CATCTTCTTCTTC
* *
50813735 TTTCCTTCTTTTTCT-TTCTTTCC
1 TTT-CTTTTTTTTCTCTTCCTTCC
50813758 TTTTCTTTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
34 5 0.10
35 12 0.24
36 7 0.14
37 24 0.47
38 3 0.06
ACGTcount: A:0.01, C:0.30, G:0.01, T:0.68
Consensus pattern (35 bp):
TTTCTTTTTTTTCTCTTCCTTCCATCTTCTTCTTC
Found at i:50813761 original size:28 final size:28
Alignment explanation
Indices: 50813725--50813782 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
50813715 TCGCTTCTCA
*
50813725 TTTCTTTTTCTTTCCTTCTT-TTTCTTTC
1 TTTCCTTTTCTTTCCTT-TTCTTTCTTTC
50813753 TTTCCTTTTCTTTCCTTTTCTTTCTTTC
1 TTTCCTTTTCTTTCCTTTTCTTTCTTTC
50813781 TT
1 TT
50813783 CTTCTTTCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 2 0.07
28 26 0.93
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTCCTTTTCTTTCCTTTTCTTTCTTTC
Found at i:50813762 original size:24 final size:25
Alignment explanation
Indices: 50813657--50813780 Score: 87
Period size: 24 Copynumber: 5.0 Consensus size: 25
50813647 ATAAAAATTA
* *
50813657 CCTTTT-TTTTCTTTTT-TTTCCTT
1 CCTTTTCTCTTCTTTTTCTTTCTTT
** *
50813680 CCTTCCCTCTTCTTCTTCTTTCTTT
1 CCTTTTCTCTTCTTTTTCTTTCTTT
** * *
50813705 TTTTTTCTCTTCGCTTCTCATTTCTTT
1 CCTTTTCTCTTC-TTTTTC-TTTCTTT
*
50813732 -TTCTTTC-CTTCTTTTTCTTTCTTT
1 CCT-TTTCTCTTCTTTTTCTTTCTTT
*
50813756 CCTTTTCT-TTCCTTTTCTTTCTTT
1 CCTTTTCTCTTCTTTTTCTTTCTTT
50813780 C
1 C
50813781 TTCTTCTTTC
Statistics
Matches: 78, Mismatches: 16, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
23 4 0.05
24 35 0.45
25 19 0.24
26 9 0.12
27 11 0.14
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.69
Consensus pattern (25 bp):
CCTTTTCTCTTCTTTTTCTTTCTTT
Found at i:50813787 original size:24 final size:24
Alignment explanation
Indices: 50813695--50813791 Score: 90
Period size: 24 Copynumber: 3.9 Consensus size: 24
50813685 CCTCTTCTTC
* *
50813695 TTCTTTCTTTTTTTTTCTCTTCGCTT
1 TTCTTTCTTTCTTCTTCT-TTC-CTT
* * *
50813721 CTCATTTCTTT-TTCTTTCCTTCTTT
1 TTC-TTTCTTTCTTC-TTCTTTCCTT
50813746 TTCTTTCTTTCCTT-TTCTTTCCTT
1 TTCTTTCTTT-CTTCTTCTTTCCTT
50813770 TTCTTTCTTTCTTCTTCTTTCC
1 TTCTTTCTTTCTTCTTCTTTCC
50813792 CTCTCCTTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.05
24 33 0.56
25 4 0.07
26 9 0.15
27 10 0.17
ACGTcount: A:0.01, C:0.28, G:0.01, T:0.70
Consensus pattern (24 bp):
TTCTTTCTTTCTTCTTCTTTCCTT
Found at i:50813790 original size:10 final size:10
Alignment explanation
Indices: 50813689--50813785 Score: 52
Period size: 10 Copynumber: 10.1 Consensus size: 10
50813679 TCCTTCCCTC
50813689 TTCTTCTTCT
1 TTCTTCTTCT
50813699 TTCTT-TT-T
1 TTCTTCTTCT
50813707 TT-TTC-TCT
1 TTCTTCTTCT
*
50813715 TCGCTTC-TCAT
1 T-TCTTCTTC-T
*
50813726 TTCTTTTTCT
1 TTCTTCTTCT
50813736 TTC--CTTCT
1 TTCTTCTTCT
50813744 TT-TTCTTTCT
1 TTCTTC-TTCT
50813754 TTCCTT-TTCT
1 TT-CTTCTTCT
50813764 TTCCTT-TTCT
1 TT-CTTCTTCT
50813774 TTCTTTCTTCT
1 TTC-TTCTTCT
50813785 T
1 T
50813786 CTTTCCCTCT
Statistics
Matches: 70, Mismatches: 4, Indels: 25
0.71 0.04 0.25
Matches are distributed among these distances:
7 3 0.04
8 11 0.16
9 4 0.06
10 41 0.59
11 9 0.13
12 2 0.03
ACGTcount: A:0.01, C:0.27, G:0.01, T:0.71
Consensus pattern (10 bp):
TTCTTCTTCT
Found at i:50813790 original size:14 final size:14
Alignment explanation
Indices: 50813689--50813790 Score: 68
Period size: 14 Copynumber: 6.9 Consensus size: 14
50813679 TCCTTCCCTC
50813689 TTCTTCTTCTTTCT
1 TTCTTCTTCTTTCT
* *
50813703 TTTTTTTTCTCTTCGCT
1 TTCTTCTTCT-TT--CT
50813720 TCTCATTTCTT-TTTCT
1 T-TC--TTCTTCTTTCT
50813736 TTCCTTCTT-TTTCT
1 TT-CTTCTTCTTTCT
*
50813750 TTCTT-TCCTTTTCT
1 TTCTTCTTC-TTTCT
50813764 TTCCTT-TTCTTTCT
1 TT-CTTCTTCTTTCT
50813778 TTCTTCTTCTTTC
1 TTCTTCTTCTTTC
50813791 CCTCTCCTTC
Statistics
Matches: 71, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
12 1 0.01
13 6 0.08
14 41 0.58
15 8 0.11
16 4 0.06
17 3 0.04
18 3 0.04
19 1 0.01
20 4 0.06
ACGTcount: A:0.01, C:0.27, G:0.01, T:0.71
Consensus pattern (14 bp):
TTCTTCTTCTTTCT
Found at i:50813801 original size:24 final size:24
Alignment explanation
Indices: 50813750--50813806 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
50813740 TTCTTTTTCT
* * *
50813750 TTCTTTCCTTTTCTTTCCTTTTCT
1 TTCTTTCCTTTTCTTTCCCTCTCC
50813774 TTCTTT-CTTCTTCTTTCCCTCTCC
1 TTCTTTCCTT-TTCTTTCCCTCTCC
50813798 TTCTCTTCC
1 TTCT-TTCC
50813807 CCCCCCCCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 3 0.11
24 21 0.78
25 2 0.07
26 1 0.04
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (24 bp):
TTCTTTCCTTTTCTTTCCCTCTCC
Found at i:50815198 original size:11 final size:10
Alignment explanation
Indices: 50815184--50815247 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
50815174 TTCTTAAATT
50815184 ATTATTAAAA
1 ATTATTAAAA
50815194 A--ATTAAAA
1 ATTATTAAAA
* *
50815202 AATATAAAAA
1 ATTATTAAAA
50815212 ATTAATTAAAA
1 ATT-ATTAAAA
* *
50815223 ATTATTTAGA
1 ATTATTAAAA
50815233 ATTA-TAAGAA
1 ATTATTAA-AA
50815243 ATTAT
1 ATTAT
50815248 AAATAATGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
8 8 0.19
9 2 0.05
10 23 0.55
11 9 0.21
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
ATTATTAAAA
Found at i:50815209 original size:9 final size:8
Alignment explanation
Indices: 50815187--50815216 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
50815177 TTAAATTATT
50815187 ATTAAAAA
1 ATTAAAAA
50815195 ATTAAAAA
1 ATTAAAAA
50815203 ATATAAAAA
1 AT-TAAAAA
50815212 ATTAA
1 ATTAA
50815217 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
ATTAAAAA
Found at i:50815305 original size:162 final size:161
Alignment explanation
Indices: 50815124--50815448 Score: 641
Period size: 162 Copynumber: 2.0 Consensus size: 161
50815114 ACAGTTGTCC
50815124 AAGCTCAAATAACTTGGGTAACCATTTGTCTAGGTTCATTTTAGAGCAGTTTCTTAAATTATTAT
1 AAGCTCAAATAACTTGGGTAACCATTTGTCTAGGTTCATTTTAGAGCAGTTTCTTAAATTATTAT
50815189 TAAAAAATTAAAAAATATAAAAAATTAATTAAAAATTATTTAGAATTATAAGAAATTATAAATAA
66 TAAAAAATTAAAAAATATAAAAAATTAATTAAAAATTATTTAGAATTATAAGAAATTATAAATAA
50815254 TGATTGATTTTTTTTTAATTTTAAAAATTGTA
131 TGATTGA-TTTTTTTTAATTTTAAAAATTGTA
50815286 AAGCTCAAATAACTTGGGTAACCATTTGTCTAGGTTCATTTTAGAGCAGTTTCTTAAATTATTAT
1 AAGCTCAAATAACTTGGGTAACCATTTGTCTAGGTTCATTTTAGAGCAGTTTCTTAAATTATTAT
50815351 TAAAAAATTAAAAAATATAAAAAATTAATTAAAAATTATTTAGAATTATAAGAAATTATAAATAA
66 TAAAAAATTAAAAAATATAAAAAATTAATTAAAAATTATTTAGAATTATAAGAAATTATAAATAA
50815416 TGATTGATTTTTTTTAATTTTAAAAATTGTA
131 TGATTGATTTTTTTTAATTTTAAAAATTGTA
50815447 AA
1 AA
50815449 AACTATATAT
Statistics
Matches: 163, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
161 26 0.16
162 137 0.84
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (161 bp):
AAGCTCAAATAACTTGGGTAACCATTTGTCTAGGTTCATTTTAGAGCAGTTTCTTAAATTATTAT
TAAAAAATTAAAAAATATAAAAAATTAATTAAAAATTATTTAGAATTATAAGAAATTATAAATAA
TGATTGATTTTTTTTAATTTTAAAAATTGTA
Found at i:50815360 original size:11 final size:10
Alignment explanation
Indices: 50815346--50815409 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
50815336 TTCTTAAATT
50815346 ATTATTAAAA
1 ATTATTAAAA
50815356 A--ATTAAAA
1 ATTATTAAAA
* *
50815364 AATATAAAAA
1 ATTATTAAAA
50815374 ATTAATTAAAA
1 ATT-ATTAAAA
* *
50815385 ATTATTTAGA
1 ATTATTAAAA
50815395 ATTA-TAAGAA
1 ATTATTAA-AA
50815405 ATTAT
1 ATTAT
50815410 AAATAATGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
8 8 0.19
9 2 0.05
10 23 0.55
11 9 0.21
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
ATTATTAAAA
Found at i:50815371 original size:9 final size:8
Alignment explanation
Indices: 50815349--50815378 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
50815339 TTAAATTATT
50815349 ATTAAAAA
1 ATTAAAAA
50815357 ATTAAAAA
1 ATTAAAAA
50815365 ATATAAAAA
1 AT-TAAAAA
50815374 ATTAA
1 ATTAA
50815379 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
ATTAAAAA
Found at i:50815744 original size:20 final size:20
Alignment explanation
Indices: 50815719--50815757 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
50815709 TTTTTAATAA
50815719 TTAAAAAATATT-ATAATTTC
1 TTAAAAAA-ATTAATAATTTC
50815739 TTAAAAAAATTAATAATTT
1 TTAAAAAAATTAATAATTT
50815758 TTATATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAAAAAAATTAATAATTTC
Found at i:50817421 original size:7 final size:7
Alignment explanation
Indices: 50817411--50817437 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
50817401 AGTTTGGTAT
50817411 TTGGGAA
1 TTGGGAA
50817418 TTGGGAA
1 TTGGGAA
50817425 TTGGGAA
1 TTGGGAA
50817432 TTGGGA
1 TTGGGA
50817438 GGGTGCAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.44, T:0.30
Consensus pattern (7 bp):
TTGGGAA
Found at i:50818604 original size:23 final size:23
Alignment explanation
Indices: 50818578--50818629 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
50818568 ATTAATAATG
* *
50818578 ATATTATTAATGAAATTTAGATA
1 ATATTATTAATAAAATTTAGAAA
* *
50818601 ATATTTTTAATAAAATTTATAAA
1 ATATTATTAATAAAATTTAGAAA
50818624 ATATTA
1 ATATTA
50818630 CCAATAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (23 bp):
ATATTATTAATAAAATTTAGAAA
Found at i:50824502 original size:47 final size:47
Alignment explanation
Indices: 50824448--50824600 Score: 265
Period size: 48 Copynumber: 3.3 Consensus size: 47
50824438 TGAATTCTAA
*
50824448 ATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
50824495 ATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
50824543 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-T
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
50824589 ATATGTGA-AAGG
1 ATATGTGATAAGG
50824601 AAAGTGTATA
Statistics
Matches: 102, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
45 4 0.04
46 9 0.09
47 44 0.43
48 45 0.44
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:50824608 original size:67 final size:68
Alignment explanation
Indices: 50824533--50824665 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 68
50824523 TGATGAATGT
* *
50824533 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATGTGA
1 GAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
50824597 AAG
66 AAG
*
50824600 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
50824665 A
66 A
50824666 TAGGGCCTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
67 52 0.84
68 10 0.16
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (68 bp):
GAAAGTGTATATATGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
AAG
Found at i:50824638 original size:114 final size:118
Alignment explanation
Indices: 50824485--50824717 Score: 393
Period size: 115 Copynumber: 2.0 Consensus size: 118
50824475 TGATGAATGT
* * *
50824485 GAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GAAAGTGTATATATGCGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
50824550 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATGTGA-AAG
66 AATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
50824600 GAAAGTGTATATGTGCG-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 GAAAGTGTATATATGCGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
50824664 AATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 AATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50824717 G
1 G
50824718 CCTAATGGCC
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
114 45 0.41
115 52 0.47
116 9 0.08
117 4 0.04
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.29
Consensus pattern (118 bp):
GAAAGTGTATATATGCGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
AATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
Found at i:50824657 original size:47 final size:47
Alignment explanation
Indices: 50824600--50825098 Score: 719
Period size: 47 Copynumber: 10.5 Consensus size: 47
50824590 TATGTGAAAG
* * *
50824600 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
50824647 GAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGT
50824695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
50824742 GAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
50824791 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
50824838 GAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
50824887 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
50824934 GAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
** *
50824983 GAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * *
50825030 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
50825077 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
50825099 TCCCGAAGGG
Statistics
Matches: 408, Mismatches: 37, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
47 231 0.57
48 45 0.11
49 132 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:50824721 original size:162 final size:154
Alignment explanation
Indices: 50824454--50825041 Score: 733
Period size: 162 Copynumber: 3.9 Consensus size: 154
50824444 CTAAATATGT
*
50824454 GATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCC
1 GATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCC
50824519 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
65 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
50824584 GTGTTATATGTGAAAGGAAAGTGTATATGTGC
130 GTG-TATATGTG--A--AAAGTG-ATAAG-GC
50824616 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCC
1 GATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCC
50824681 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
65 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
50824746 GTGTATA--T----A-T-AT---GT
130 GTGTATATGTGAAAAGTGATAAGGC
* * * * *
50824760 GATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCG-ATAAGGCCTAATAGCC
1 GATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCC
*
50824824 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
65 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50824889 AAGTG--TA--T----A-TG-T---GC
128 AAGTGTATATGTGAAAAGTGATAAGGC
* *
50824903 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTG-ATAAGGCTTAATGG
1 GATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG--TATATATGTGAATAGGGCCTAATGG
** *
50824967 CCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
63 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50825032 AAGTGTATAT
128 AAGTGTATAT
50825042 ATGTGACAGG
Statistics
Matches: 399, Mismatches: 19, Indels: 32
0.89 0.04 0.07
Matches are distributed among these distances:
143 123 0.31
144 45 0.11
145 91 0.23
148 2 0.01
150 1 0.00
151 1 0.00
159 1 0.00
161 4 0.01
162 131 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (154 bp):
GATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATGTGAAAAGTGATAAGGC
Found at i:50824816 original size:96 final size:96
Alignment explanation
Indices: 50824600--50825083 Score: 787
Period size: 96 Copynumber: 5.1 Consensus size: 96
50824590 TATGTGAAAG
50824600 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGT
1 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* *
50824663 GAATAGGGCCTAATGGCCGATGTGATGAATGT
66 G-ATAAGGCTTAATGGCCGATGTGATGAATGT
* * *
50824695 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
50824760 GATAAGGCTTAATGGCCGATGTGATGAATGT
66 GATAAGGCTTAATGGCCGATGTGATGAATGT
50824791 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
50824856 GATAAGGCTTAATGGCCGATGTGATGAATGT
66 GATAAGGCTTAATGGCCGATGTGATGAATGT
50824887 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
50824952 GATAAGGCTTAATGGCCGATGTGATGAATGT
66 GATAAGGCTTAATGGCCGATGTGATGAATGT
* * * *
50824983 GAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
1 GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
* * ** * * *
50825046 GACAGGGCCGAGTGGCCAATGTGATGGATGT
66 GATAAGGCTTAATGGCCGATGTGATGAATGT
50825077 GAAAGTG
1 GAAAGTG
50825084 CATAAATGTG
Statistics
Matches: 368, Mismatches: 19, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
94 40 0.11
95 51 0.14
96 267 0.73
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
GAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGT
GATAAGGCTTAATGGCCGATGTGATGAATGT
Found at i:50825272 original size:37 final size:37
Alignment explanation
Indices: 50825216--50825294 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50825206 TCGAGCTCTA
* * *
50825216 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
50825253 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50825290 AAGAC
1 AAGAC
50825295 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50828584 original size:262 final size:261
Alignment explanation
Indices: 50828119--50828763 Score: 835
Period size: 262 Copynumber: 2.5 Consensus size: 261
50828109 GTTTAACATG
* *
50828119 AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACAATCATAGTCT
1 AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAGTCT
* *
50828184 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTGAGTTAGATGATTTTCTATCGTTGCTCC
66 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGATGATTTTCTATCATTGCTCC
* * *
50828249 AGACAACTCGCTGATTTAAGATCACAACTAATATTATTAAGGCTCGCTGATTAAAGATCACAACA
131 AAACAACTCGCTGATTTAAGATCACAACTAATATTATTAAGGCTCGCTAATTAAAGATCAAAACA
* * * * *
50828314 TAAGTTCATTTGATTTATTATCATGAACGATTTCATCTGAGTTAGCTAATTTTCTATCAG-TGCT
196 TAAGTTCA-TTGATTTACTATCATGAACAATTTAATCTAAGTTAGCTAATTTTCTATC-GCTACT
*
50828378 CCA
259 CAA
** * * * * * *
50828381 AACAACTCATTGATTTAAGACCACAACTAATATTATTAGGGCTCGTTGATTTACGGTTACAGTCT
1 AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAGTCT
* * *
50828446 AAGTTCATTTGATTTACTATCATGAACAATTTTATTTAAGTTAGTTGATTTTCTATCATTGCTCT
66 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGATGATTTTCTATCATTGCTCC
* * * * * * * * *
50828511 AAATAGCTCGTTGATTTAAGATCACAATTGATATTATTCAGGCTCGCTAATTTACGATCAAAACC
131 AAACAACTCGCTGATTTAAGATCACAACTAATATTATTAAGGCTCGCTAATTAAAGATCAAAACA
*
50828576 TAAGTTCATTGATTTACTATCATGAACAATTTAATCTAAGTTAGCTTATTTTCTATCGCTACTCA
196 TAAGTTCATTGATTTACTATCATGAACAATTTAATCTAAGTTAGCTAATTTTCTATCGCTACTCA
50828641 A
261 A
** * * * * * * *
50828642 AACAGTTTGCTGATTTAATATCACAACTGACATTATTAAGGTTTGTTGATTTATGATCACA-ACT
1 AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAGTC-
* * *
50828706 TAAGTTTATTTGATTTACTATCATGAACAATTTTCTCTAAGTTAGCTGATTTTCTATC
65 TAAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGATGATTTTCTATC
50828764 GCTATCCTTA
Statistics
Matches: 327, Mismatches: 54, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
260 2 0.01
261 149 0.46
262 176 0.54
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (261 bp):
AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAGTCT
AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGATGATTTTCTATCATTGCTCC
AAACAACTCGCTGATTTAAGATCACAACTAATATTATTAAGGCTCGCTAATTAAAGATCAAAACA
TAAGTTCATTGATTTACTATCATGAACAATTTAATCTAAGTTAGCTAATTTTCTATCGCTACTCA
A
Found at i:50828767 original size:131 final size:131
Alignment explanation
Indices: 50828119--50828766 Score: 755
Period size: 131 Copynumber: 5.0 Consensus size: 131
50828109 GTTTAACATG
* * * *
50828119 AACAACTCGCTGATTTAAAATCACAACTGATATTATTAAGGCTCGTTGATTTACAATCA-TAGTC
1 AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACT-
* * *
50828183 TAAGTTCATTTGATTTACTATCATGAACAATTTTATCTGAGTTAGATGATTTTCTATCGTTGCTC
65 TAAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATCGCTGCTC
50828248 CA
130 CA
* * * * * *
50828250 GACAACTCGCTGATTTAAGATCACAACTAATATTATTAAGGCTCGCTGATTAAAGATCACAACAT
1 AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACTT
* * * * *
50828315 AAGTTCATTTGATTTATTATCATGAACGATTTCATCTGAGTTAGCTAATTTTCTATCAG-TGCTC
66 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATC-GCTGCTC
50828379 CA
130 CA
** * * * * * *
50828381 AACAACTCATTGATTTAAGACCACAACTAATATTATTAGGGCTCGTTGATTTACGGTTAC-AGTC
1 AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACT-
* * **
50828445 TAAGTTCATTTGATTTACTATCATGAACAATTTTATTTAAGTTAGTTGATTTTCTATCATTGCTC
65 TAAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATCGCTGCTC
*
50828510 TA
130 CA
* * * * * * * * *
50828512 AATAGCTCGTTGATTTAAGATCACAATTGATATTATTCAGGCTCGCTAATTTACGATCAAAACCT
1 AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACTT
* * * *
50828577 AAGTTCA-TTGATTTACTATCATGAACAATTTAATCTAAGTTAGCTTATTTTCTATCGCTACTCA
66 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATCGCTGCTCC
50828641 A
131 A
** * * * * * *
50828642 AACAGTTTGCTGATTTAATATCACAACTGACATTATTAAGGTTTGTTGATTTATGATCACAACTT
1 AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACTT
* *
50828707 AAGTTTATTTGATTTACTATCATGAACAATTTTCTCTAAGTTAGCTGATTTTCTATCGCT
66 AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATCGCT
50828767 ATCCTTAACA
Statistics
Matches: 433, Mismatches: 78, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
130 107 0.25
131 323 0.75
132 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (131 bp):
AACAACTCGCTGATTTAAGATCACAACTGATATTATTAAGGCTCGTTGATTTACGATCACAACTT
AAGTTCATTTGATTTACTATCATGAACAATTTTATCTAAGTTAGCTGATTTTCTATCGCTGCTCC
A
Found at i:50840107 original size:23 final size:23
Alignment explanation
Indices: 50840080--50840123 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
50840070 AGTACTATTA
* * *
50840080 ATGATTACTTAATTTAATTAAAC
1 ATGATTAATTAAGTAAATTAAAC
50840103 ATGATTAATTAAGTAAATTAA
1 ATGATTAATTAAGTAAATTAA
50840124 GGATTAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (23 bp):
ATGATTAATTAAGTAAATTAAAC
Found at i:50849858 original size:40 final size:40
Alignment explanation
Indices: 50849803--50849895 Score: 127
Period size: 40 Copynumber: 2.3 Consensus size: 40
50849793 GTTTGGATAA
*
50849803 AAAACGCCGGTAAAAATCGAGCATTAGCGGCG-CT-TCAGAG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGACTCT-A-AG
* *
50849843 AAAACGCCGCTAAAAATTGAGCATTAGCGGCGACTCTAAT
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCGACTCTAAG
50849883 AAAACGCCGCTAA
1 AAAACGCCGCTAA
50849896 TAATATGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
40 44 0.92
41 3 0.06
42 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCGACTCTAAG
Found at i:50851889 original size:292 final size:294
Alignment explanation
Indices: 50851311--50851906 Score: 634
Period size: 292 Copynumber: 2.0 Consensus size: 294
50851301 GGCGCAAGAT
* * * *** **
50851311 TATAAACGCCGCGAATGGGCTCATTTAGTCATGAATACATCGTCGTTTTTCCTTTTTCTTAGTGG
1 TATAAACGCCGCAAATGGGCTAATTTAGTCAAGAATACATCGTCGTTTTTCCTAGATAGTAGTGG
* * *
50851376 CGTTTTATACCAAAATGCCAAAACGTTGTCCTAATTGTTTGGGAAACGACTTTGTTTCCACGGTT
66 CGTTTTATACCAAAACGCCAAAACGTTGTCCTAAGTGTTTGGGAAACGACTTCGTTTCCACGGTT
* *
50851441 AATTTAGTGGCGCTTACATGTAAACGCCGCAAAGTTATTCGTTTAGTCATGGAAAACGTCGTCGT
131 AATTTAGTGGCGCTTA-ATGTAAACGCCACAAAGTTATTCGTTTAGTCATGGAAAACATCGTCGT
* * * ** *
50851506 TTTTCCATGTTGTGACTGGCGTTTTATGCCTAAACGCCACAATTTTGACTAACTGGCTGTTAAAA
195 TTTTCCATGTTATGACTGGCATTTTATGCCAAAACGCCACAATTAAGACTAACTGGCTCTTAAAA
* **
50851571 GAAAGCGTTTCTACTTTTAGTTTGTGGCGCTTGTG
260 GAAAGCATTTCTACTGATAGTTTGTGGCGCTTGTG
* *
50851606 TATAAACGTCGCAAATGGG-TAAATTTAGTCAAGAATACGTCGTCGTTTTT-CTAGATAGTAGTG
1 TATAAACGCCGCAAATGGGCT-AATTTAGTCAAGAATACATCGTCGTTTTTCCTAGATAGTAGTG
* * * **
50851669 GCGTTTTATACCAAAACGCCAGAAA-TTTGTCGTAAGTGTTT-GGAAATGA-TATCGTTTCCGGG
65 GCGTTTTATACCAAAACGCCA-AAACGTTGTCCTAAGTGTTTGGGAAACGACT-TCGTTTCCACG
* * * *
50851731 GTT-ATTTAGTGGTGCTT-ATGTAGAAACGCCACAAATTTGTTTGTTTAGTCATGGAAAACATCG
128 GTTAATTTAGTGGCGCTTAATGT--AAACGCCACAAAGTTATTCGTTTAGTCATGGAAAACATCG
* * * ** **
50851794 TCG-TTTTCCAATGTTATGAGTGGCATTTTATGCCAAAACGCTAGAATTAAGACTGTCTGTTTCT
191 TCGTTTTTCC-ATGTTATGACTGGCATTTTATGCCAAAACGCCACAATTAAGACTAACTGGCTCT
* *** * * *
50851858 TAAACGACTTCATTTCT-GTGGATATTTTGTGGCGCTTGTT
255 TAAAAGAAAGCATTTCTACT-GATAGTTTGTGGCGCTTGTG
50851898 TATAAACGC
1 TATAAACGC
50851907 TGCTACCAGT
Statistics
Matches: 246, Mismatches: 48, Indels: 17
0.79 0.15 0.05
Matches are distributed among these distances:
290 4 0.02
291 7 0.03
292 129 0.52
293 18 0.07
294 42 0.17
295 46 0.19
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (294 bp):
TATAAACGCCGCAAATGGGCTAATTTAGTCAAGAATACATCGTCGTTTTTCCTAGATAGTAGTGG
CGTTTTATACCAAAACGCCAAAACGTTGTCCTAAGTGTTTGGGAAACGACTTCGTTTCCACGGTT
AATTTAGTGGCGCTTAATGTAAACGCCACAAAGTTATTCGTTTAGTCATGGAAAACATCGTCGTT
TTTCCATGTTATGACTGGCATTTTATGCCAAAACGCCACAATTAAGACTAACTGGCTCTTAAAAG
AAAGCATTTCTACTGATAGTTTGTGGCGCTTGTG
Found at i:50853252 original size:13 final size:13
Alignment explanation
Indices: 50853234--50853264 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
50853224 AAATCCTTTG
50853234 TAAATATTTTAAA
1 TAAATATTTTAAA
*
50853247 TAAATATTTTAAT
1 TAAATATTTTAAA
50853260 TAAAT
1 TAAAT
50853265 TGAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATATTTTAAA
Found at i:50861131 original size:15 final size:16
Alignment explanation
Indices: 50861113--50861152 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
50861103 TTTCAACCTT
*
50861113 TTTCTTTTCA-TTCAA
1 TTTCATTTCATTTCAA
50861128 TTTCATTT-ATTTCAA
1 TTTCATTTCATTTCAA
50861143 TTTCATTTCA
1 TTTCATTTCA
50861153 AATGCCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTCATTTCATTTCAA
Found at i:50861259 original size:53 final size:54
Alignment explanation
Indices: 50861112--50861305 Score: 286
Period size: 53 Copynumber: 3.6 Consensus size: 54
50861102 ATTTCAACCT
* *
50861112 TTTTCTTTTCATTCAATTTCATTTATTTCAATTTCATTTCAAATGCCTGACACAAT
1 TTTT-TTTTCATTCAATTTCATTTATTTCAATTTCATTTCAAAGGCCTGACAC-AC
50861168 TTTTTTTTCATTCAATTTCATTTATTTC-ATATTCATTTCAAAGGCCTGACAC-C
1 TTTTTTTTCATTCAATTTCATTTATTTCAAT-TTCATTTCAAAGGCCTGACACAC
* * *
50861221 TTTTTTTTCATTCAATTTCTTTTATCTCAATTTTATTTCAAAGGCCTGACACAC
1 TTTTTTTTCATTCAATTTCATTTATTTCAATTTCATTTCAAAGGCCTGACACAC
50861275 -TTTTTTTCATTCAATTTCATTTATTTTCAAT
1 TTTTTTTTCATTCAATTTCATTTA-TTTCAAT
50861306 GCAAAATTTT
Statistics
Matches: 127, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
53 68 0.54
54 11 0.09
55 44 0.35
56 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (54 bp):
TTTTTTTTCATTCAATTTCATTTATTTCAATTTCATTTCAAAGGCCTGACACAC
Found at i:50875098 original size:51 final size:52
Alignment explanation
Indices: 50874990--50875214 Score: 152
Period size: 50 Copynumber: 4.3 Consensus size: 52
50874980 GGTGTCGGCT
* *** * *
50874990 ATTAACAGGCCAGCACCC-AAAAATTTTTTTTCCCGTATAGATGGTGCCGGCC
1 ATTAACAGGCCAACACCCGAAAAA-AAATTTTCCCGTAAAGATGGTGCCAGCC
* *
50875042 ATTAACAGGCCAACACCTGAAAAAAAATTTT-CCGTAAAGGTGGTGCCAGCC
1 ATTAACAGGCCAACACCCGAAAAAAAATTTTCCCGTAAAGATGGTGCCAGCC
* * ***** * * * *
50875093 TTTAACAGGCCAGCACCCGAAATTGTTTTTTTTTCCCATAAAGGTAGTGCCGGCC
1 ATTAACAGGCCAACACCCGAAA---AAAAATTTTCCCGTAAAGATGGTGCCAGCC
* * * *
50875148 ATTGACAGGCCACCACCC-AAAAAAAA-TTTCTCGTAAAGGTGGTGCCAGCC
1 ATTAACAGGCCAACACCCGAAAAAAAATTTTCCCGTAAAGATGGTGCCAGCC
* * *
50875198 ATTGACAAGCCACCACC
1 ATTAACAGGCCAACACC
50875215 AAAATTTTTT
Statistics
Matches: 136, Mismatches: 32, Indels: 12
0.76 0.18 0.07
Matches are distributed among these distances:
50 36 0.26
51 36 0.26
52 20 0.15
53 5 0.04
54 7 0.05
55 32 0.24
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (52 bp):
ATTAACAGGCCAACACCCGAAAAAAAATTTTCCCGTAAAGATGGTGCCAGCC
Found at i:50875197 original size:105 final size:104
Alignment explanation
Indices: 50874990--50875229 Score: 306
Period size: 105 Copynumber: 2.3 Consensus size: 104
50874980 GGTGTCGGCT
** * * *
50874990 ATTAACAGGCCAGCACCCAAA-AATTTTTTTTCCCGTATAGATGGTGCCGGCCATTAACAGGCCA
1 ATTAACAGGCCAGCACCCAAATTTTTTTTTTTCCCATAAAGATAGTGCCGGCCATTAACAGGCCA
*
50875054 ACACCTGAAAAAAAATTTTCCGTAAAGGTGGTGCCAGCC
66 ACACCTCAAAAAAAATTTTCCGTAAAGGTGGTGCCAGCC
* * *
50875093 TTTAACAGGCCAGCACCCGAAATTGTTTTTTTTTCCCATAAAGGTAGTGCCGGCCATTGACAGGC
1 ATTAACAGGCCAGCACCC-AAATT-TTTTTTTTTCCCATAAAGATAGTGCCGGCCATTAACAGGC
*
50875158 CACCACC-CAAAAAAAA-TTTCTCGTAAAGGTGGTGCCAGCC
64 CAACACCTCAAAAAAAATTTTC-CGTAAAGGTGGTGCCAGCC
* * * *
50875198 ATTGACAAGCCACCACCAAAATTTTTTTTTTT
1 ATTAACAGGCCAGCACCCAAATTTTTTTTTTT
50875230 AAAATTTTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 8
0.84 0.11 0.06
Matches are distributed among these distances:
103 26 0.22
104 12 0.10
105 40 0.34
106 40 0.34
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (104 bp):
ATTAACAGGCCAGCACCCAAATTTTTTTTTTTCCCATAAAGATAGTGCCGGCCATTAACAGGCCA
ACACCTCAAAAAAAATTTTCCGTAAAGGTGGTGCCAGCC
Found at i:50875199 original size:50 final size:50
Alignment explanation
Indices: 50874990--50875218 Score: 147
Period size: 51 Copynumber: 4.4 Consensus size: 50
50874980 GGTGTCGGCT
* *** * * * *
50874990 ATTAACAGGCCAGCACCCAAAAATTTTTTTTCCCGTATAGATGGTGCCGGCC
1 ATTAACAGGCCACCACCCAAAAA--AAATTTCTCGTAAAGGTGGTGCCAGCC
* *
50875042 ATTAACAGGCCAACACCTGAAAAAAAATTT-TCCGTAAAGGTGGTGCCAGCC
1 ATTAACAGGCCACCACC-CAAAAAAAATTTCT-CGTAAAGGTGGTGCCAGCC
* * ***** * * * *
50875093 TTTAACAGGCCAGCACCCGAAATTGTTTTTTTTTCCCATAAAGGTAGTGCCGGCC
1 ATTAACAGGCCACCACCC-AAA----AAAAATTTCTCGTAAAGGTGGTGCCAGCC
*
50875148 ATTGACAGGCCACCACCCAAAAAAAATTTCTCGTAAAGGTGGTGCCAGCC
1 ATTAACAGGCCACCACCCAAAAAAAATTTCTCGTAAAGGTGGTGCCAGCC
* *
50875198 ATTGACAAGCCACCA-CCAAAA
1 ATTAACAGGCCACCACCCAAAA
50875219 TTTTTTTTTT
Statistics
Matches: 135, Mismatches: 34, Indels: 19
0.72 0.18 0.10
Matches are distributed among these distances:
49 6 0.04
50 34 0.25
51 37 0.27
52 16 0.12
53 5 0.04
54 3 0.02
55 34 0.25
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (50 bp):
ATTAACAGGCCACCACCCAAAAAAAATTTCTCGTAAAGGTGGTGCCAGCC
Found at i:50876008 original size:9 final size:9
Alignment explanation
Indices: 50875994--50876042 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
50875984 GTTAAACGAA
50875994 TCGAGTTAT
1 TCGAGTTAT
*
50876003 TCGAGTTAA
1 TCGAGTTAT
*
50876012 TCAAGTTAT
1 TCGAGTTAT
*
50876021 TCGAGTTAA
1 TCGAGTTAT
50876030 TCGAGTTAT
1 TCGAGTTAT
50876039 TCGA
1 TCGA
50876043 ATCAACTCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:50876018 original size:18 final size:18
Alignment explanation
Indices: 50875992--50876042 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
50875982 GAGTTAAACG
50875992 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
*
50876010 AATCAAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
50876028 AATCGAGTTATTCGA
1 AATCGAGTTATTCGA
50876043 ATCAACTCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:50876369 original size:30 final size:31
Alignment explanation
Indices: 50876335--50876394 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
50876325 AAACCTTTTA
*
50876335 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
50876365 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
50876395 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:50878204 original size:40 final size:40
Alignment explanation
Indices: 50878134--50878345 Score: 250
Period size: 40 Copynumber: 5.3 Consensus size: 40
50878124 CATTTGAATG
* * *
50878134 ATATCCGGGCTAAGTCCCAAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
50878174 TTATCCGGGCTAAGACCCGAAGCCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
50878214 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
50878254 TTATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
50878294 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
50878334 ATATCC-GGCTAA
1 ATATCCGGGCTAA
50878346 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 10 0.07
40 128 0.90
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:50878281 original size:80 final size:80
Alignment explanation
Indices: 50878138--50878345 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 80
50878128 TGAATGATAT
* *
50878138 CCGGGCTAAGTCCCAAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGCCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGCCATTTG
*
50878203 TGCGAGTTGCTATAC
66 TGCGAGTTGATATAC
* * *
50878218 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCTGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGCCATTTG
*
50878283 TGCGAGTTGATATAT
66 TGCGAGTTGATATAC
* * * *
50878298 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
50878346 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 6 0.05
80 110 0.95
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGCCATTTG
TGCGAGTTGATATAC
Found at i:50890197 original size:615 final size:619
Alignment explanation
Indices: 50888998--50890299 Score: 1827
Period size: 615 Copynumber: 2.1 Consensus size: 619
50888988 ATTTTCCCCA
* * * * *
50888998 TTTT-AAAAAAATAAATTCAATGATTGAAATGGAATCAATCATAAAAAAAAATTGATAATTTTTT
1 TTTTAAAAAAAATAAATTCAACGATTGAAATGCATTCAATCATACAAAAAAATTGATAATTTTCT
* * *
50889062 TTTTGTGTAAGTTCAAGATGTTTGGAAGTTACATTTAACTTGAGACGCAAGTTACTATCATCTAC
66 TTTGGTGTAAATTCAAGATGTTTGGAAGTTACATTCAACTTGAGACGCAAGTTACTATCATCTAC
* * * * * *
50889127 AAATTTGCCACTTTTTGAAAAACAAAGGTAAGGGGATTGGAGAACTTCCCATTTGTTGATTTTGT
131 AAAATTGCCACTTTTTGAAAAACAAAGGTAAGGCGATTGAAGAACTTCCCATTTCTCGATTCTGT
*
50889192 CGAGACTACAAAATCCATGATTGAAGCAACGATCGACAAAAAAATAGCTTTGATACCATACTAGA
196 CGAGACTACAAAATCCATGATTGAAGCAACGATCGACAAAAAAATAACTTTGATACCATACTAGA
* * * * *
50889257 AATATAGAAGAAGAAGAAGAGTAATTCGTTAATAATTCTATTAGAATATAGGGGCCTTGTGTATT
261 AATATAGAAG-AGAAGAAGAGTAATTCATTAATAATACTATTAAAATACAAGGGCCTTGTGTATT
*
50889322 TATACACTGGAGGCTTAATAGAAGTGATAACAAAAATGATAACAGAAATGGAAACTACTCATAAC
325 TATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGATAACAGAAATGGAAACTACTCATAAC
* * *
50889387 TAGATTTAGTTGAGCCTAACTTATAGAAGTTATCTAGTTACTTCCTTACTATTCCATAGGTATAA
390 TAGATTTAGTTAAGCCTAACTTATAGAAG-TATCTA-TTACCTCCTTACTATTCCATAGGTACAA
* * * * *
50889452 GAACGAGAACCAAGTAGTTAATGTCATGGTTGTCTTTGATGGAAATCTCCCTTTACGCCTTCATG
453 GAACGAGAACCAAGTAGCTAATGGCATGGCTGCCTGTGATGGAAATCTCCCTTTACGCCTTCATG
*
50889517 TTTATTCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGCTTTGCC
518 TTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGCTTTGCC
* * * *
50889582 TAGATTAGTTACTGTGTAATTGTTTTATTTCCCCT-CTT
583 TAGATTAGTTACTATGTAATCGTTCTA--TCCCCTCCCT
*
50889620 TTTTAAAAAAAATAAATTCAACGATTGAAATGCATTCAATCATGCAAAAAAATTGATACATTTTC
1 TTTTAAAAAAAATAAATTCAACGATTGAAATGCATTCAATCATACAAAAAAATTGATA-ATTTTC
* *
50889685 TTTTGGTGTAAATTCAAGATGTTTGGAAGTTACATTCCACTTGAGACGCAAGTTACTATCATTTA
65 TTTTGGTGTAAATTCAAGATGTTTGGAAGTTACATTCAACTTGAGACGCAAGTTACTATCATCTA
* * * *
50889750 CAAGAATTGCCACTTTTTGAGAAGCAAATGTAAGGCGATTGAAGAACTTTCCATTTCTCGATTCT
130 CAA-AATTGCCACTTTTTGAAAAACAAAGGTAAGGCGATTGAAGAACTTCCCATTTCTCGATTCT
* ** *
50889815 GTCGAGATTGTAGAATCCATGATTGAAGCAACGATC-AGCAAAAAAATAACTTTGATACCATACT
194 GTCGAGACTACAAAATCCATGATTGAAGCAACGATCGA-CAAAAAAATAACTTTGATACCATACT
* * *
50889879 AGAAATATAG-AG-TAAGAAGAGTAATTCATTAATCATACTCTTAAAATACAAGGGCCTTGTGTA
258 AGAAATATAGAAGAGAAGAAGAGTAATTCATTAATAATACTATTAAAATACAAGGGCCTTGTGTA
*
50889942 TTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGGATAATAGAAATGGAAACTACTCAT
323 TTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAAT-GATAACAGAAATGGAAACTACTCAT
50890007 AACTAGATTTAGTTAAGCCTAACTTATAGCAA-T-T-T-TT-CCT-C-TACTATTCCATAGGTAC
387 AACTAGATTTAGTTAAGCCTAACTTATAG-AAGTATCTATTACCTCCTTACTATTCCATAGGTAC
* * * * * *
50890065 AAGGAGGGGAACCAAGTAGCTAATGGCATGGCTGCCTGTGTTGGAAATCTCCTTTTATGCCTTCA
451 AAGAACGAGAACCAAGTAGCTAATGGCATGGCTGCCTGTGATGGAAATCTCCCTTTACGCCTTCA
* * * *
50890130 TGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGTTGTATATGATGATTGTAGTATGGTTTTG
516 TGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGCTTTG
50890195 CCTAGATTAGTTACTATGTAATCGTTCTATCCCCTCCCCT
581 CCTAGATTAGTTACTATGTAATCGTTCTATCCCCT-CCCT
* * * * *
50890235 TTTTAAAAAAAATTAAATTCAACGATTGCAATTCAATGCTATCATACAAAAGAATTGATAATTTT
1 TTTTAAAAAAAA-TAAATTCAACGATTGAAATGC-ATTCAATCATACAAAAAAATTGATAATTTT
50890300 TTTCCTCTTC
Statistics
Matches: 605, Mismatches: 65, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
613 6 0.01
615 170 0.28
616 25 0.04
617 23 0.04
618 2 0.00
620 1 0.00
621 1 0.00
622 86 0.14
623 100 0.17
624 73 0.12
625 118 0.20
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (619 bp):
TTTTAAAAAAAATAAATTCAACGATTGAAATGCATTCAATCATACAAAAAAATTGATAATTTTCT
TTTGGTGTAAATTCAAGATGTTTGGAAGTTACATTCAACTTGAGACGCAAGTTACTATCATCTAC
AAAATTGCCACTTTTTGAAAAACAAAGGTAAGGCGATTGAAGAACTTCCCATTTCTCGATTCTGT
CGAGACTACAAAATCCATGATTGAAGCAACGATCGACAAAAAAATAACTTTGATACCATACTAGA
AATATAGAAGAGAAGAAGAGTAATTCATTAATAATACTATTAAAATACAAGGGCCTTGTGTATTT
ATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGATAACAGAAATGGAAACTACTCATAACT
AGATTTAGTTAAGCCTAACTTATAGAAGTATCTATTACCTCCTTACTATTCCATAGGTACAAGAA
CGAGAACCAAGTAGCTAATGGCATGGCTGCCTGTGATGGAAATCTCCCTTTACGCCTTCATGTTT
ATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGGCTTTGCCTAG
ATTAGTTACTATGTAATCGTTCTATCCCCTCCCT
Found at i:50890607 original size:21 final size:20
Alignment explanation
Indices: 50890540--50890607 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
50890530 TATTATAGTA
* *
50890540 TTCCCTTATAATTTTTTATG
1 TTCCCTCATATTTTTTTATG
** *
50890560 CACCCTCATATTTTTTTATAC
1 TTCCCTCATATTTTTTTAT-G
50890581 TT-CCTCATATTTTTTTGATG
1 TTCCCTCATATTTTTTT-ATG
50890601 TTCCCTC
1 TTCCCTC
50890608 GTAATTTCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.18, C:0.24, G:0.04, T:0.54
Consensus pattern (20 bp):
TTCCCTCATATTTTTTTATG
Found at i:50891103 original size:20 final size:20
Alignment explanation
Indices: 50891075--50891123 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
50891065 TATATTAAAA
* * *
50891075 ATATAAAAAAATATTTTTTT
1 ATATCAAAAAATAGTTTTTC
*
50891095 ATATCAAAAATTAGTTTTTC
1 ATATCAAAAAATAGTTTTTC
*
50891115 ATGTCAAAA
1 ATATCAAAA
50891124 TTTAATTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (20 bp):
ATATCAAAAAATAGTTTTTC
Found at i:50894367 original size:24 final size:24
Alignment explanation
Indices: 50894340--50894391 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50894330 TTAGTAAGTC
*
50894340 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
50894364 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
50894388 AAAT
1 AAAT
50894392 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:50897224 original size:26 final size:26
Alignment explanation
Indices: 50897174--50897226 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
50897164 TTATATGATG
*
50897174 AAATAAATAATAAATTATATAATATT
1 AAATAAATAATAAATTAAATAATATT
*
50897200 AAATAAATAAATAAA-TAAATTATATT
1 AAATAAAT-AATAAATTAAATAATATT
50897226 A
1 A
50897227 TATATAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
AAATAAATAATAAATTAAATAATATT
Found at i:50897524 original size:23 final size:24
Alignment explanation
Indices: 50897498--50897549 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
50897488 ATGATAAAAA
*
50897498 TTTAATAATGAG-AAAATTATTAT
1 TTTAACAATGAGTAAAATTATTAT
* * *
50897521 TTTACCAATGAGTAAAATTGTTGT
1 TTTAACAATGAGTAAAATTATTAT
50897545 TTTAA
1 TTTAA
50897550 AATATATTCC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (24 bp):
TTTAACAATGAGTAAAATTATTAT
Found at i:50897547 original size:24 final size:23
Alignment explanation
Indices: 50897504--50897548 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
50897494 AAAATTTAAT
50897504 AATGAGAAAATTATTATTTTACC
1 AATGAGAAAATTATTATTTTACC
* *
50897527 AATGAGTAAAATTGTTGTTTTA
1 AATGAG-AAAATTATTATTTTA
50897549 AAATATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (23 bp):
AATGAGAAAATTATTATTTTACC
Found at i:50900655 original size:14 final size:15
Alignment explanation
Indices: 50900626--50900681 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
50900616 CAAACACACC
*
50900626 CTTAGTTTTTCAATA
1 CTTAATTTTTCAATA
50900641 CTTAATTTTTC-ATA
1 CTTAATTTTTCAATA
* *
50900655 CTTAAATTTTCAACA
1 CTTAATTTTTCAATA
*
50900670 CTTAATTCTTCA
1 CTTAATTTTTCA
50900682 TTTTATCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 13 0.37
15 22 0.63
ACGTcount: A:0.30, C:0.18, G:0.02, T:0.50
Consensus pattern (15 bp):
CTTAATTTTTCAATA
Found at i:50901674 original size:8 final size:8
Alignment explanation
Indices: 50901661--50901685 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50901651 AATTATTATT
50901661 TTTTAAAA
1 TTTTAAAA
50901669 TTTTAAAA
1 TTTTAAAA
50901677 TTTTAAAA
1 TTTTAAAA
50901685 T
1 T
50901686 ATTGATGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:50907914 original size:22 final size:22
Alignment explanation
Indices: 50907886--50908053 Score: 70
Period size: 22 Copynumber: 7.4 Consensus size: 22
50907876 AAAATTTAAT
50907886 AGCATATATACAACAAATGTGC
1 AGCATATATACAACAAATGTGC
* * * *
50907908 AGCATATACATACCAAATTGAGC
1 AGCATATATACAACAAA-TGTGC
* * ** * *
50907931 AGCATTTTTACGCCAAAATTTAAC
1 AGCATATATACAAC-AAATGT-GC
* *
50907955 AGCATATATACTACAAATGGGC
1 AGCATATATACAACAAATGTGC
* *
50907977 AGCATATACGTAC--CAAATTGAGT
1 AGCATATA--TACAACAAA-TGTGC
* * * * *
50908000 AGCATTTTTACACCAAAATTTAAC
1 AGCATATATACAAC-AAATGT-GC
*
50908024 AGCATATATACAACAAATGGGC
1 AGCATATATACAACAAATGTGC
50908046 AGCATATA
1 AGCATATA
50908054 CATAATACAT
Statistics
Matches: 103, Mismatches: 33, Indels: 20
0.66 0.21 0.13
Matches are distributed among these distances:
21 3 0.03
22 36 0.35
23 33 0.32
24 31 0.30
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (22 bp):
AGCATATATACAACAAATGTGC
Found at i:50907934 original size:69 final size:69
Alignment explanation
Indices: 50907768--50908057 Score: 391
Period size: 69 Copynumber: 4.2 Consensus size: 69
50907758 CTTGTTTGGA
* * * ** * *
50907768 CAGCATTTATATACCAAATTAAACAGCATTTACACACCAAAATTTGGACAGCTTATATACAACAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTT-AACAGCATATATACAACAA
*
50907833 CTGGG
65 ATGGG
* * * * *
50907838 TAGTATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAATAGCATATATACAACAAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
*
50907903 TGTG
66 TGGG
* * *
50907907 CAGCATATACATACCAAATTGAGCAGCATTTTTACGCCAAAATTTAACAGCATATATACTACAAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
50907972 TGGG
66 TGGG
* **
50907976 CAGCATATACGTACCAAATTGAGTAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
1 CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
50908041 TGGG
66 TGGG
50908045 CAGCATATACATA
1 CAGCATATACATA
50908058 ATACATCATA
Statistics
Matches: 193, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
69 156 0.81
70 37 0.19
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (69 bp):
CAGCATATACATACCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAA
TGGG
Found at i:50908035 original size:24 final size:23
Alignment explanation
Indices: 50907841--50908041 Score: 95
Period size: 24 Copynumber: 8.6 Consensus size: 23
50907831 AACTGGGTAG
50907841 TATATACATACCAAATTTAACAGCA
1 TATATAC--ACCAAATTTAACAGCA
* *
50907866 CT-TTTACACCAAAATTTAATAGCA
1 -TATATACACC-AAATTTAACAGCA
* * *
50907890 TATATACAACAAATGT-GCAGCA
1 TATATACACCAAATTTAACAGCA
* * * *
50907912 TATACATACCAAATTGAGCAGCA
1 TATATACACCAAATTTAACAGCA
* * *
50907935 TTTTTACGCCAAAATTTAACAGCA
1 TATATACACC-AAATTTAACAGCA
***
50907959 TATATACTA-CAAA-TGGGCAGCA
1 TATATAC-ACCAAATTTAACAGCA
*** * **
50907981 TATACGTACCAAATTGAGTAGCA
1 TATATACACCAAATTTAACAGCA
* *
50908004 TTTTTACACCAAAATTTAACAGCA
1 TATATACACC-AAATTTAACAGCA
*
50908028 TATATACAACAAAT
1 TATATACACCAAAT
50908042 GGGCAGCATA
Statistics
Matches: 126, Mismatches: 41, Indels: 19
0.68 0.22 0.10
Matches are distributed among these distances:
21 1 0.01
22 29 0.23
23 39 0.31
24 52 0.41
25 4 0.03
26 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.28
Consensus pattern (23 bp):
TATATACACCAAATTTAACAGCA
Found at i:50908692 original size:41 final size:41
Alignment explanation
Indices: 50908647--50908844 Score: 279
Period size: 41 Copynumber: 4.8 Consensus size: 41
50908637 TTGTATAAAA
* * * * * * *
50908647 CACCGGCATAAAGCCTGCTAGGTACAAAGCCCGATACATTT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
* * *
50908688 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATATAATT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
* *
50908729 CACCTGCATAGAGCCTGCTAGGCATAAAGCCTGATATAATT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
*
50908770 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAAAT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
50908811 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGA
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGA
50908845 ACTTACAAAA
Statistics
Matches: 141, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 141 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (41 bp):
CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
Found at i:50915313 original size:23 final size:23
Alignment explanation
Indices: 50915257--50915547 Score: 101
Period size: 23 Copynumber: 12.6 Consensus size: 23
50915247 TGGACAACTC
* * * *
50915257 TTATACATCAATTTGGACATCAT
1 TTATACACCAAATTGAACAGCAT
** *
50915280 TTATATGCCAAATTAAACAGCAT
1 TTATACACCAAATTGAACAGCAT
*
50915303 TTATACACCAAAATTTGGACAGC-T
1 TTATACACC-AAA-TTGAACAGCAT
* **
50915327 TATATACAACAAA-TGGGCAGCAT
1 T-TATACACCAAATTGAACAGCAT
* * * *
50915350 ATACATACCAAATTTAACAGCACT
1 TTATACACCAAATTGAACAGCA-T
*
50915374 TT-TACACCAAAATTTAACAGCAT
1 TTATACACC-AAATTGAACAGCAT
* * ***
50915397 ATATACAACAAA-TGGGTAGCAT
1 TTATACACCAAATTGAACAGCAT
* * * * *
50915419 GTACATACCAAATTGAGCAGTAT
1 TTATACACCAAATTGAACAGCAT
* *
50915442 TTTTACACCAAAATTTAACAGCAT
1 TTATACACC-AAATTGAACAGCAT
* * ** *
50915466 ATATACAACAAA-TGGGCATCA-
1 TTATACACCAAATTGAACAGCAT
**
50915487 -TATACGTACCAAATTGAGTAGCAT
1 TTATAC--ACCAAATTGAACAGCAT
* *
50915511 TTTTACACCAAAATTTAACAGCAT
1 TTATACACC-AAATTGAACAGCAT
* *
50915535 ATATACAACAAAT
1 TTATACACCAAAT
50915548 AGGCAACATA
Statistics
Matches: 191, Mismatches: 61, Indels: 32
0.67 0.21 0.11
Matches are distributed among these distances:
20 5 0.03
22 39 0.20
23 67 0.35
24 62 0.32
25 18 0.09
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.28
Consensus pattern (23 bp):
TTATACACCAAATTGAACAGCAT
Found at i:50915316 original size:24 final size:24
Alignment explanation
Indices: 50915289--50915546 Score: 83
Period size: 24 Copynumber: 11.1 Consensus size: 24
50915279 TTTATATGCC
*
50915289 AAATTAAACAGCATTTATACACCA
1 AAATTGAACAGCATTTATACACCA
* *
50915313 AAATTTGGACAGC-TTATATACAAC-
1 AAA-TTGAACAGCATT-TATACACCA
** * * *
50915337 AAA-TGGGCAGCATATACATACC-
1 AAATTGAACAGCATTTATACACCA
*
50915359 AAATTTAACAGCACTTT-TACACCA
1 AAATTGAACAGCA-TTTATACACCA
* * *
50915383 AAATTTAACAGCATATATACAAC-
1 AAATTGAACAGCATTTATACACCA
*** * * *
50915406 AAA-TGGGTAGCATGTACATACC-
1 AAATTGAACAGCATTTATACACCA
* * *
50915428 AAATTGAGCAGTATTTTTACACCA
1 AAATTGAACAGCATTTATACACCA
* * *
50915452 AAATTTAACAGCATATATACAAC-
1 AAATTGAACAGCATTTATACACCA
** *
50915475 AAA-TGGGCATCA--TATACGTACC-
1 AAATTGAACAGCATTTATAC--ACCA
** *
50915497 AAATTGAGTAGCATTTTTACACCA
1 AAATTGAACAGCATTTATACACCA
* * *
50915521 AAATTTAACAGCATATATACAACA
1 AAATTGAACAGCATTTATACACCA
50915545 AA
1 AA
50915547 TAGGCAACAT
Statistics
Matches: 167, Mismatches: 52, Indels: 30
0.67 0.21 0.12
Matches are distributed among these distances:
20 5 0.03
22 39 0.23
23 40 0.24
24 65 0.39
25 18 0.11
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (24 bp):
AAATTGAACAGCATTTATACACCA
Found at i:50915418 original size:69 final size:69
Alignment explanation
Indices: 50915287--50915563 Score: 401
Period size: 69 Copynumber: 4.0 Consensus size: 69
50915277 CATTTATATG
* * * *
50915287 CCAAATTAAACAGCATTTATACACCAAAATTTGGACAGCTTATATACAACAAATGGGCAGCATAT
1 CCAAATTGAACAGCATTTTTACACCAAAATTT-AACAGCATATATACAACAAATGGGCAGCATAT
50915352 ACATA
65 ACATA
* * * *
50915357 CCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGTAGCATGTA
1 CCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGCAGCATATA
50915422 CATA
66 CATA
* * *
50915426 CCAAATTGAGCAGTATTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGCATCATATA
1 CCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGCAGCATATA
*
50915491 CGTA
66 CATA
** * *
50915495 CCAAATTGAGTAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAACATATA
1 CCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGCAGCATATA
50915560 CATA
66 CATA
50915564 ATACATCATA
Statistics
Matches: 187, Mismatches: 20, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
69 158 0.84
70 29 0.16
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (69 bp):
CCAAATTGAACAGCATTTTTACACCAAAATTTAACAGCATATATACAACAAATGGGCAGCATATA
CATA
Found at i:50916416 original size:41 final size:41
Alignment explanation
Indices: 50916371--50916568 Score: 288
Period size: 41 Copynumber: 4.8 Consensus size: 41
50916361 TTGTATAAAA
* * * * * *
50916371 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCGATACATTT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
* * *
50916412 CACCGGCACAAAGCCTGCTAGACATAAAGTCTGATATAATT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
* *
50916453 CACCGGCATAGAGCCTGCTAGGCATAAAGCCTGTTATAATT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
50916494 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
*
50916535 CACCGGCACAGAGCCTTCTAGGCATAAAGCCTGA
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGA
50916569 ACTTACAAAA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 142 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (41 bp):
CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
Found at i:50920309 original size:57 final size:59
Alignment explanation
Indices: 50920192--50920339 Score: 176
Period size: 57 Copynumber: 2.5 Consensus size: 59
50920182 ATTGACAGTA
*
50920192 AAAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCTCGAAGAATATGTGTG
1 AAAAA-GATCTAGCCCGGACGGGTGATCC-AT-CTGATATAGCCCTCCCGAAGAATATGTG-G
* *
50920255 AAAAAGATCTAGCCCGGATGGGTGAT-C-T-TGATATAGGCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGGGTGATCCATCTGATATAGCCCTCCCGAAGAATATGTGG
* * *
50920311 AAAATGGATTTAGCCCGGACGGGTAATCC
1 AAAA-AGATCTAGCCCGGACGGGTGATCC
50920340 GAATTAGGGT
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
56 5 0.07
57 43 0.57
58 1 0.01
59 1 0.01
61 1 0.01
62 20 0.26
63 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (59 bp):
AAAAAGATCTAGCCCGGACGGGTGATCCATCTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:50927289 original size:41 final size:41
Alignment explanation
Indices: 50927244--50927334 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
50927234 GCTTAGAGCT
*
50927244 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
50927285 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
50927326 TAGCAGGCT
1 TAGCAGGCT
50927335 AAGTGCCAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:50929096 original size:88 final size:88
Alignment explanation
Indices: 50928959--50929700 Score: 1119
Period size: 88 Copynumber: 8.4 Consensus size: 88
50928949 TGGAACCGCA
*
50928959 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCGGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
*
50929024 CAGCGAAGTAGATCGAAGATACC
66 CAGCGAAGTAGATCGAAGACACC
* * *
50929047 AGCCTTATTTCCCTGAGCAGCAGTAGAGTAGGTTGAAAATAGCAAATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
50929112 CAGCGAAGTAGATCGAAGACACC
66 CAGCGAAGTAGATCGAAGACACC
* * * *
50929135 AGCCTTATCTCCCTAAGTAGCAATGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
*
50929200 CAGCGACGTAGATCGAAGACACC
66 CAGCGAAGTAGATCGAAGACACC
* **
50929223 AGCCTTATCTCCCTGAGCAGCAGTGGAGTTGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTAA
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
*
50929288 CAGCGAAGTAGATCGAAGATACC
66 CAGCGAAGTAGATCGAAGACACC
* * * * * * **
50929311 AACCTTATCTCCCTGAGCAGCTGTGGAGTAGGTTAAAAATAGCAAATCTTGTTTTCTTGTATTAA
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
50929376 CAGCGAAGTAGATCGAAGACACC
66 CAGCGAAGTAGATCGAAGACACC
* *
50929399 AGACTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
50929464 CAGCGAAGTAGATCGAAGACACC
66 CAGCGAAGTAGATCGAAGACACC
* * *
50929487 AGCCTTATCTCCCTGAGCAGCAGTGGAGTTGGTTGAAAATAGCAGATATTGTCTTCCTATATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
50929552 CAGCGAAGTAGATCGAAGACACC
66 CAGCGAAGTAGATCGAAGACACC
* *
50929575 AGCCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
* * * *
50929640 CAACGAAGTAGGTTGAAG-CAACA
66 CAGCGAAGTAGATCGAAGAC-ACC
* **
50929663 AGTCTTATCTCCCTGAAGTTGCAAG-GGAGTAGGTTGAA
1 AGCCTTATCTCCCTG-AGCAGC-AGTGGAGTAGGTTGAA
50929701 GCAACAAGTC
Statistics
Matches: 592, Mismatches: 59, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
87 1 0.00
88 572 0.97
89 17 0.03
90 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (88 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
CAGCGAAGTAGATCGAAGACACC
Found at i:50933957 original size:19 final size:22
Alignment explanation
Indices: 50933924--50933967 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
50933914 ATTTTAATAA
50933924 TAAAATTTATCAATAATATT-T
1 TAAAATTTATCAATAATATTAT
50933945 TAAAATTT-T-AATAATATTAT
1 TAAAATTTATCAATAATATTAT
50933965 TAA
1 TAA
50933968 TATATTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 5 0.23
21 8 0.36
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAATTTATCAATAATATTAT
Found at i:50933974 original size:11 final size:12
Alignment explanation
Indices: 50933952--50934007 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
50933942 TTTTAAAATT
50933952 TTAATAATATTA
1 TTAATAATATTA
50933964 TTAAT-ATATTA
1 TTAATAATATTA
*
50933975 TTGAAAAATATT-
1 TT-AATAATATTA
*
50933987 TATATTAATATT-
1 T-TAATAATATTA
50933999 TTAATAATA
1 TTAATAATA
50934008 AATATATGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
11 15 0.41
12 16 0.43
13 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (12 bp):
TTAATAATATTA
Found at i:50934010 original size:27 final size:27
Alignment explanation
Indices: 50933913--50934012 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
50933903 ATTAAAATTT
*
50933913 TATTTTAATAATAAA-ATTTATCAATAA
1 TATTTTAATAATAAATATTTAT-ATTAA
* *
50933940 TATTTTAA-AATTTTAATA-ATATTATTAA
1 TATTTTAATAA--TAAATATTTA-TATTAA
* *
50933968 TATATTATTGAA-AAATATTTATATTAA
1 TATTTTAAT-AATAAATATTTATATTAA
50933995 TATTTTAATAATAAATAT
1 TATTTTAATAATAAATAT
50934013 ATGTTAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
26 4 0.07
27 31 0.55
28 17 0.30
29 2 0.04
30 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (27 bp):
TATTTTAATAATAAATATTTATATTAA
Found at i:50934303 original size:25 final size:25
Alignment explanation
Indices: 50934269--50934317 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
50934259 GATTCAGCCC
50934269 AGCTGAAGGAGAAGAAGAAGAAGAG
1 AGCTGAAGGAGAAGAAGAAGAAGAG
50934294 AGCTGAAGGAGAAGAAGAAGAAGA
1 AGCTGAAGGAGAAGAAGAAGAAGA
50934318 AGGTGGTGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.53, C:0.04, G:0.39, T:0.04
Consensus pattern (25 bp):
AGCTGAAGGAGAAGAAGAAGAAGAG
Found at i:50934444 original size:13 final size:13
Alignment explanation
Indices: 50934428--50934471 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
50934418 TGTATAATTT
*
50934428 TTATTATTTTTTG
1 TTATTATTTTTAG
*
50934441 TTATTA-GTTTAG
1 TTATTATTTTTAG
*
50934453 TTATTATTGTTAG
1 TTATTATTTTTAG
50934466 TTATTA
1 TTATTA
50934472 AGATTAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (13 bp):
TTATTATTTTTAG
Found at i:50934602 original size:41 final size:40
Alignment explanation
Indices: 50934541--50934748 Score: 134
Period size: 40 Copynumber: 5.3 Consensus size: 40
50934531 ATTTAGTTAT
* *
50934541 TAATAATTATTGTTACTTAGTATTATTGTTAGTAAAAA-AC
1 TAATTATTATT-TTAGTTAGTATTATTGTTAGTAAAAACAC
* * *
50934581 TAA-TATTTTTATTATGGTTAGTTATTA-GGATTAGTAAAAACCC
1 TAATTATTATT-TTA--GTTAG-TATTATTG-TTAGTAAAAACAC
* ****
50934624 TAATTATTATTTTAGTTAGTATGATTGTTAGTTTTTACA-
1 TAATTATTATTTTAGTTAGTATTATTGTTAGTAAAAACAC
* * *
50934663 TTA-TATTA--TT-GTTAGTTATTATTTTTAGT-AAAACCC
1 TAATTATTATTTTAGTTAG-TATTATTGTTAGTAAAAACAC
50934699 TAATTATTATTGTTAGTTAGTATTATT-TTGAGTAAAAA-AC
1 TAATTATTATT-TTAGTTAGTATTATTGTT-AGTAAAAACAC
50934739 T-ATTATTATT
1 TAATTATTATT
50934749 GTTATTGTGT
Statistics
Matches: 129, Mismatches: 23, Indels: 33
0.70 0.12 0.18
Matches are distributed among these distances:
35 7 0.05
36 15 0.12
37 5 0.04
38 5 0.04
39 21 0.16
40 28 0.22
41 20 0.16
42 15 0.12
43 7 0.05
44 6 0.05
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (40 bp):
TAATTATTATTTTAGTTAGTATTATTGTTAGTAAAAACAC
Found at i:50934746 original size:76 final size:77
Alignment explanation
Indices: 50934541--50934752 Score: 216
Period size: 76 Copynumber: 2.7 Consensus size: 77
50934531 ATTTAGTTAT
* * *
50934541 TAATAATTATTGTTACTTAGTATTATTGTTAGTAAAAAACTAATATTTTTATTATGGTTAGTTAT
1 TAATTATTATTGTTAGTTAGTATTATTGTTAGTAAAAAAC---TA---TTATTATTGTTAGTTAT
50934606 TAGGATTAGTAAAAACCC
60 TAGGATTAGTAAAAACCC
* *** * * ***
50934624 TAATTATTATT-TTAGTTAGTATGATTGTTAGTTTTTACATTA-TATTATTGTTAGTTATTATTT
1 TAATTATTATTGTTAGTTAGTATTATTGTTAG-TAAAAAACTATTATTATTGTTAGTTATTAGGA
50934687 TTAGT-AAAACCC
65 TTAGTAAAAACCC
50934699 TAATTATTATTGTTAGTTAGTATTATT-TTGAGTAAAAAACTATTATTATTGTTA
1 TAATTATTATTGTTAGTTAGTATTATTGTT-AGTAAAAAACTATTATTATTGTTA
50934753 TTGTGTTAGT
Statistics
Matches: 107, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
75 25 0.23
76 49 0.46
80 2 0.02
82 18 0.17
83 13 0.12
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (77 bp):
TAATTATTATTGTTAGTTAGTATTATTGTTAGTAAAAAACTATTATTATTGTTAGTTATTAGGAT
TAGTAAAAACCC
Found at i:50934867 original size:14 final size:14
Alignment explanation
Indices: 50934848--50934875 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50934838 TTGCATATTG
50934848 AAACATTAATTTTT
1 AAACATTAATTTTT
50934862 AAACATTAATTTTT
1 AAACATTAATTTTT
50934876 TTATTTAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
AAACATTAATTTTT
Found at i:50938739 original size:51 final size:49
Alignment explanation
Indices: 50938604--50938790 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 49
50938594 AGTGAAAGTG
* * * *
50938604 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGAATA
* * *
50938653 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GAATA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGAATA
* * *
50938702 ATTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGTA
1 A--T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGA--ATA
*
50938756 ATGGTCACATGTGTAGTACTATGTACAGGCTACTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
50938791 TGTGAACCGA
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 6 0.05
50 36 0.31
51 67 0.58
52 3 0.03
54 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (49 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGAATA
Found at i:50938794 original size:26 final size:26
Alignment explanation
Indices: 50938714--50938794 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
50938704 TTCGATCACG
*
50938714 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTACAGGCTACTA
* *
50938740 CGTGTA-T-CAGATGGTA-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTACA-GGCT-ACTA
50938765 TGTGTAGTACTATGTACAGGCTACTA
1 TGTGTAGTACTATGTACAGGCTACTA
50938791 TGTG
1 TGTG
50938795 AACCGAACAT
Statistics
Matches: 41, Mismatches: 5, Indels: 18
0.64 0.08 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.44
26 21 0.51
27 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTACAGGCTACTA
Found at i:50938852 original size:45 final size:45
Alignment explanation
Indices: 50938796--50938890 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
50938786 TACTATGTGA
* *
50938796 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCT
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGATTCT
* * *
50938841 ACCGGACATCATTGATTAATAAGGTGGTTGCTATATGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGATTCT
50938886 ACCGA
1 ACCGA
50938891 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATATGCTGATTCT
Found at i:50938957 original size:23 final size:22
Alignment explanation
Indices: 50938931--50938977 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
50938921 GGAAATTGAC
50938931 TAGGTGT-AATTGAATAATGAATA
1 TAGGTGTGAATTGAAT--TGAATA
50938954 TAGGTGTGGAATTGAATTGAATA
1 TAGGTGT-GAATTGAATTGAATA
50938977 T
1 T
50938978 CGACTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 14 0.64
25 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (22 bp):
TAGGTGTGAATTGAATTGAATA
Found at i:50944160 original size:158 final size:156
Alignment explanation
Indices: 50943251--50944583 Score: 1996
Period size: 156 Copynumber: 8.6 Consensus size: 156
50943241 GTAAAAAACT
* * *
50943251 CTTATTTCGGCCATTTGTTCGTATTTTTTCCTTG-ATTTTATTAC-TT--A-AAAAA-ATACTAT
1 CTTATTTCGGCCCTTTGTTCGTATTTTTTCC-CGAATTTTATTACTTTCAATAAAAATATATTAT
* * *
50943310 TTTCTAATTTTCTAATTTTACATTATTTTTAGTTCATTATGTTTGAAATGTATTAATTTAGTGTG
65 TTTCTAATTTTATTATTTTACATTA-TTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
* *
50943375 TTTCTTAAATAAA-TT-ACAAA--AACC
129 TTTTTTAAATAAATTTCAAAAATTAACC
* * *
50943399 CTTATTTCGGCCCTTTGTTTGTATTTTTTTCCTGAATTTTATTACTTTCAGTAAAAATATATTAT
1 CTTATTTCGGCCCTTTGTTCGTA-TTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTAT
* *
50943464 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGCATTAACTTAGTGTGT
65 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
* *
50943529 TTTTTAAATAAATTTTAATAATTAACC
130 TTTTTAAATAAATTTCAAAAATTAACC
50943556 CTTATTTCGGCCCTTTGTTCGTATTTTTTCCCCG-ATTTTATTACTTTCAATAAAAATATATTAT
1 CTTATTTCGGCCCTTTGTTCGTATTTTTT-CCCGAATTTTATTACTTTCAATAAAAATATATTAT
* *
50943620 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTATTGCG-
65 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
50943684 TTTTTAAATAAATTTCAAAAATTAACC
130 TTTTTAAATAAATTTCAAAAATTAACC
* *
50943711 CTTATTTCAGCCCTTTGTTCGTATTTTTCTTCTCGAATTTTATTACTTTCAATAAAAATATATTA
1 CTTATTTCGGCCCTTTGTTCGTA-TTTT-TTCCCGAATTTTATTACTTTCAATAAAAATATATTA
50943776 TTTT-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
64 TTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
*
50943840 TTTTTTAAATAAATTTCAAAAGTTAACC
129 TTTTTTAAATAAATTTCAAAAATTAACC
50943868 CTTATTTCGGCCCTTTGTTCGTATTTTTTCCC-AGATTTTATTACTTTCAATAAAAATATATTAT
1 CTTATTTCGGCCCTTTGTTCGTATTTTTTCCCGA-ATTTTATTACTTTCAATAAAAATATATTAT
50943932 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
65 TTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGT
*
50943997 TTTTTAAATAAATTTCAATAATTAACC
130 TTTTTAAATAAATTTCAAAAATTAACC
* * * *
50944024 CTTATTTCAGCCATTTGTTCGTATGTTTCTTCCCAAATTTTATTACTTTCAATAAAAACATATTA
1 CTTATTTCGGCCCTTTGTTCGTAT-TTT-TTCCCGAATTTTATTACTTTCAATAAAAATATATTA
* *
50944089 TTTTTTAATTTTATTATTTTACATTGTTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
64 TTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
50944154 TTTTTTAAATAAATTTCAAAAATTAACC
129 TTTTTTAAATAAATTTCAAAAATTAACC
* * *
50944182 ATTATTTCGGCCCTTTATTCGTATTTTTCTTCCCGAATTTTATTACTTTCAATAAAACTATATTA
1 CTTATTTCGGCCCTTTGTTCGTA-TTTT-TTCCCGAATTTTATTACTTTCAATAAAAATATATTA
*
50944247 TTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTAATTTAGTGTG
64 TTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
50944312 TTTTTTAAATAAATTTCAAAAATTAACC
129 TTTTTTAAATAAATTTCAAAAATTAACC
* *
50944340 CTTATTTTGGCCCTTTGTTCGTATTTTTTTCTCGAATTTTATTACTTTCAATAAAAATATATTAT
1 CTTATTTCGGCCCTTTGTTCGTA-TTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTAT
50944405 TTTCGT-ATTTTATTATTTTACATTATTTTAGTACATTATGTTTG-AATGTATTAATTTAGTGTG
65 TTTC-TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTG
50944468 TTTTTTAAATAAATTT-AGTAAAA--AACC
129 TTTTTTAAATAAATTTCA--AAAATTAACC
* * * *
50944495 CTTATTTCGGCCCTTTATTTGTATTTTTT-CAG-ATTTTATTACTTT-TA-AAAAATAGT-TTAT
1 CTTATTTCGGCCCTTTGTTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAATA-TATTAT
*
50944555 TTTCGT-ATTTTATTATTTTACATTCTTTT
65 TTTC-TAATTTTATTATTTTACATTATTTT
50944584 CATATTTTAT
Statistics
Matches: 1100, Mismatches: 59, Indels: 50
0.91 0.05 0.04
Matches are distributed among these distances:
148 23 0.02
149 18 0.02
150 41 0.04
151 2 0.00
152 13 0.01
153 54 0.05
154 38 0.03
155 112 0.10
156 307 0.28
157 195 0.18
158 295 0.27
159 2 0.00
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (156 bp):
CTTATTTCGGCCCTTTGTTCGTATTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATT
TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTT
TTTTAAATAAATTTCAAAAATTAACC
Found at i:50944782 original size:26 final size:27
Alignment explanation
Indices: 50944728--50944782 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
50944718 GGGTTTTTTC
* * * *
50944728 ATGCTAAATAAATTTCATAAAATATAT
1 ATGCTAAATAAATATAATAAAACACAT
50944755 ATGCTAAATAAA-ATAATAAAACACAT
1 ATGCTAAATAAATATAATAAAACACAT
50944781 AT
1 AT
50944783 AATGTACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (27 bp):
ATGCTAAATAAATATAATAAAACACAT
Found at i:50944899 original size:5 final size:5
Alignment explanation
Indices: 50944889--50945017 Score: 63
Period size: 5 Copynumber: 26.4 Consensus size: 5
50944879 TTTCTTCTTC
* * * * *
50944889 TCCTT TCCTT TTCTT TCTTT TTCTT T-CTT TCTTTT TCC-T TCC-T TCCCT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TC-CTT TCCTT TCCTT TCCTT
* * * * * *
50944937 CCCTT TTC-T T-CTT CTCCTT TCCTT TTCTT TCTTT TTCTT T-ATT CTCCTT
1 TCCTT TCCTT TCCTT -TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT -TCCTT
* * *
50944986 TCCTT TCCTT TCCTT TTCTT TCTTT TTCTT TC
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TC
50945018 TTCTCCTTCT
Statistics
Matches: 92, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
3 1 0.01
4 17 0.18
5 65 0.71
6 9 0.10
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.67
Consensus pattern (5 bp):
TCCTT
Found at i:50944910 original size:10 final size:10
Alignment explanation
Indices: 50944878--50945019 Score: 83
Period size: 10 Copynumber: 14.1 Consensus size: 10
50944868 CTTCCCTCCC
50944878 TTTTC-TTCT
1 TTTTCTTTCT
* * *
50944887 TCTCCTTTCC
1 TTTTCTTTCT
50944897 TTTTCTTTCT
1 TTTTCTTTCT
50944907 TTTTCTTTCT
1 TTTTCTTTCT
50944917 TTCTT-TTTCCT
1 TT-TTCTTT-CT
* * * *
50944928 TCCTTCCCTCCC
1 T--TTTCTTTCT
50944940 TTTTC-TTCT
1 TTTTCTTTCT
* * *
50944949 TCTCCTTTCC
1 TTTTCTTTCT
50944959 TTTTCTTTCT
1 TTTTCTTTCT
*
50944969 TTTTCTTTAT
1 TTTTCTTTCT
* * *
50944979 TCTCCTTTCC
1 TTTTCTTTCT
* *
50944989 TTTCCTTTCC
1 TTTTCTTTCT
50944999 TTTTCTTTCT
1 TTTTCTTTCT
50945009 TTTTCTTTCT
1 TTTTCTTTCT
50945019 T
1 T
50945020 CTCCTTCTTT
Statistics
Matches: 99, Mismatches: 27, Indels: 13
0.71 0.19 0.09
Matches are distributed among these distances:
9 8 0.08
10 81 0.82
11 5 0.05
12 3 0.03
13 2 0.02
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:50944910 original size:62 final size:62
Alignment explanation
Indices: 50944844--50944976 Score: 257
Period size: 62 Copynumber: 2.1 Consensus size: 62
50944834 TTACTTATTT
50944844 TTTTTCTTTCTTTCTTTTTCATTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 TTTTTCTTTCTTTCTTTTTCATTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
*
50944906 TTTTTCTTTCTTTCTTTTTCCTTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 TTTTTCTTTCTTTCTTTTTCATTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
50944968 TTTTTCTTT
1 TTTTTCTTT
50944977 ATTCTCCTTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (62 bp):
TTTTTCTTTCTTTCTTTTTCATTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
Found at i:50944988 original size:62 final size:62
Alignment explanation
Indices: 50944844--50944995 Score: 234
Period size: 62 Copynumber: 2.4 Consensus size: 62
50944834 TTACTTATTT
* * *
50944844 TTTTTCTTTCTTTCTTTTTCATTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 TTTTTCTTTATTTCTCTTTCCTTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
* *
50944906 TTTTTCTTTCTTTCTTTTTCCTTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 TTTTTCTTTATTTCTCTTTCCTTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
50944968 TTTTTCTTTA-TTCTCCTTTCCTTTCCTT
1 TTTTTCTTTATTTCT-CTTTCC-TTCCTT
50944996 TCCTTTTCTT
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
61 4 0.05
62 75 0.88
63 6 0.07
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (62 bp):
TTTTTCTTTATTTCTCTTTCCTTCCTTCCCTCCCTTTTCTTCTTCTCCTTTCCTTTTCTTTC
Found at i:50945027 original size:13 final size:13
Alignment explanation
Indices: 50945011--50945035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50945001 TTCTTTCTTT
50945011 TTCTTTCTTCTCC
1 TTCTTTCTTCTCC
50945024 TTCTTTCTTCTC
1 TTCTTTCTTCTC
50945036 TCCAGCTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (13 bp):
TTCTTTCTTCTCC
Found at i:50953795 original size:38 final size:38
Alignment explanation
Indices: 50953732--50953822 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 38
50953722 TGGTCTCACT
* * * * *
50953732 CGTGTGGCTCACATGGCTTGGCCCATTGCCCACACGCC
1 CGTGTGGCCCACACGGCCTGACCCATTACCCACACGCC
* * *
50953770 TGTGTGGCCCACACGGCCTGACCCATTATCCATACGCC
1 CGTGTGGCCCACACGGCCTGACCCATTACCCACACGCC
*
50953808 CATGTGGCCCACACG
1 CGTGTGGCCCACACG
50953823 CTCAAACTTG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (38 bp):
CGTGTGGCCCACACGGCCTGACCCATTACCCACACGCC
Found at i:50959811 original size:25 final size:25
Alignment explanation
Indices: 50959751--50959811 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
50959741 CATTACATAG
50959751 CTCACATGAGCCTCTCGTTATATGA
1 CTCACATGAGCCTCTCGTTATATGA
* *
50959776 CTCGA-AAGAGCTTCTCGTTTATAT-A
1 CTC-ACATGAGCCTCTCG-TTATATGA
50959801 CTCACATGAGC
1 CTCACATGAGC
50959812 ATTCCCAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 1 0.03
25 22 0.73
26 7 0.23
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (25 bp):
CTCACATGAGCCTCTCGTTATATGA
Found at i:50960237 original size:16 final size:16
Alignment explanation
Indices: 50960216--50960254 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
50960206 ATAGTACTTC
50960216 GGAAGCTCATTGGGTT
1 GGAAGCTCATTGGGTT
*
50960232 GGAAGCTCGTTGGGTT
1 GGAAGCTCATTGGGTT
50960248 GGAAGCT
1 GGAAGCT
50960255 TGGCGAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.18, C:0.13, G:0.41, T:0.28
Consensus pattern (16 bp):
GGAAGCTCATTGGGTT
Found at i:50964193 original size:37 final size:37
Alignment explanation
Indices: 50964140--50964227 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
50964130 TATGTGACAC
**
50964140 AAGTTTAGCTCAGACGAGTAACTTAATGTTGTTTTAT
1 AAGTTTAGCTCAGACGAGTAACTTAATGTCATTTTAT
** *
50964177 AAGTTTAGCTTGGACGAGTAACTTGATGTCATTTTAT
1 AAGTTTAGCTCAGACGAGTAACTTAATGTCATTTTAT
50964214 AAGTTTAGCTCAGA
1 AAGTTTAGCTCAGA
50964228 TGGCTACCCT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (37 bp):
AAGTTTAGCTCAGACGAGTAACTTAATGTCATTTTAT
Found at i:50965133 original size:24 final size:24
Alignment explanation
Indices: 50965106--50965157 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50965096 TACCCATGAT
*
50965106 ATTCAAAATATATTAAATTCTTTA
1 ATTCAAAATATATTAAATTCCTTA
**
50965130 ATTCCCAATATATTAAATTCCTTA
1 ATTCAAAATATATTAAATTCCTTA
50965154 ATTC
1 ATTC
50965158 CCAATTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTCAAAATATATTAAATTCCTTA
Found at i:50965158 original size:24 final size:24
Alignment explanation
Indices: 50965112--50965162 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
50965102 TGATATTCAA
*
50965112 AATATATTAAATTCTTTAATTCCC
1 AATATATTAAATTCCTTAATTCCC
50965136 AATATATTAAATTCCTTAATTCCC
1 AATATATTAAATTCCTTAATTCCC
50965160 AAT
1 AAT
50965163 TTCTTATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (24 bp):
AATATATTAAATTCCTTAATTCCC
Found at i:50966335 original size:14 final size:15
Alignment explanation
Indices: 50966316--50966347 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
50966306 AGGGATTTTA
50966316 TTTTTCTTTTCA-AT
1 TTTTTCTTTTCATAT
50966330 TTTTTCTTTTCATAT
1 TTTTTCTTTTCATAT
50966345 TTT
1 TTT
50966348 CTGTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTCTTTTCATAT
Found at i:50967168 original size:18 final size:17
Alignment explanation
Indices: 50967136--50967170 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50967126 TCTTTTATTT
50967136 TATTTTTTGTATATATG
1 TATTTTTTGTATATATG
*
50967153 TATTTGTTTTTATATATG
1 TATTT-TTTGTATATATG
50967171 ATTAACTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (17 bp):
TATTTTTTGTATATATG
Found at i:50975004 original size:11 final size:11
Alignment explanation
Indices: 50974988--50975018 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
50974978 CATAAATTTA
50974988 TATATTCTTGG
1 TATATTCTTGG
50974999 TATATTCTTGG
1 TATATTCTTGG
50975010 TATATTCTT
1 TATATTCTT
50975019 TGATATGCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.10, G:0.13, T:0.58
Consensus pattern (11 bp):
TATATTCTTGG
Found at i:50979823 original size:87 final size:87
Alignment explanation
Indices: 50979700--50980114 Score: 499
Period size: 87 Copynumber: 4.8 Consensus size: 87
50979690 TCATGTGTCT
*
50979700 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTCAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
50979765 ATTAATTCTATCTCCCTAAGTC-
66 ATTAATTCTATCTCCCTAAG-CA
* * * * *
50979787 ATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGGAGTAGGGAAACAAATTTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
* ** * *
50979852 ACTGGTTTTATCTCTCTAAGCA
66 ATTAATTCTATCTCCCTAAGCA
* * * * *
50979874 ATAGTAAAGCAGATCGAAGACAGTGAATCTTATCTTCCCCAAGAGTAGGGAAATAGATCTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
*
50979939 ATTAATTCTATCTCCCTAATCA
66 ATTAATTCTATCTCCCTAAGCA
* * * * * * ** * *
50979961 ATAGTTGAGCGGACCAAAGATGGCAAATCCCATTTTCCCCAGGAGTAGGGAAACAGATTTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
* **
50980026 ACTGGTTCTATCTCCCTAAGCA
66 ATTAATTCTATCTCCCTAAGCA
* * * * *
50980048 ATAGTGGAGCAGATCCAAGACGGCGAACCTTATCTTCCCTAAGAATAGGGAAACAGATTTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
50980113 AT
66 AT
50980115 AAATACTACC
Statistics
Matches: 267, Mismatches: 60, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
86 1 0.00
87 266 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (87 bp):
ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAGCC
ATTAATTCTATCTCCCTAAGCA
Found at i:50980001 original size:174 final size:173
Alignment explanation
Indices: 50979700--50980114 Score: 616
Period size: 174 Copynumber: 2.4 Consensus size: 173
50979690 TCATGTGTCT
50979700 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTCAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATT-AAGCC
* * * *
50979765 ATTAATTCTATCTCCCTAAGTCATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAGG
65 ATTAATTCTATCTCCCTAAGTCATAGTGGAGCGGACCAAAGACGGCAAATCCCATCTTCCCCAGG
* *
50979830 AGTAGGGAAACAAATTTAAGCCACTGGTTTTATCTCTCTAAGCA
130 AGTAGGGAAACAAATTTAAGCCACTGGTTCTATCTCCCTAAGCA
* * * *
50979874 ATAGTAAAGCAGATCGAAGACAGTGAATCTTATCTTCCCCAAGAGTAGGGAAATAGATCTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGAT-TAAGCC
* * *
50979939 ATTAATTCTATCTCCCTAA-TCAATAGTTGAGCGGACCAAAGATGGCAAATCCCATTTTCCCCAG
65 ATTAATTCTATCTCCCTAAGTC-ATAGTGGAGCGGACCAAAGACGGCAAATCCCATCTTCCCCAG
*
50980003 GAGTAGGGAAACAGATTTAAGCCACTGGTTCTATCTCCCTAAGCA
129 GAGTAGGGAAACAAATTTAAGCCACTGGTTCTATCTCCCTAAGCA
* * * * *
50980048 ATAGTGGAGCAGATCCAAGACGGCGAACCTTATCTTCCCTAAGAATAGGGAAACAGATTTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGA-TTAAGCC
50980113 AT
65 AT
50980115 AAATACTACC
Statistics
Matches: 215, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
173 2 0.01
174 211 0.98
175 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (173 bp):
ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTAAGCCA
TTAATTCTATCTCCCTAAGTCATAGTGGAGCGGACCAAAGACGGCAAATCCCATCTTCCCCAGGA
GTAGGGAAACAAATTTAAGCCACTGGTTCTATCTCCCTAAGCA
Found at i:50980689 original size:13 final size:14
Alignment explanation
Indices: 50980658--50980691 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
50980648 AGGGATTTTA
50980658 TTTTTCTTTTCGAT
1 TTTTTCTTTTCGAT
50980672 TTTTTCTTTTC-AT
1 TTTTTCTTTTCGAT
50980685 TTTTTCT
1 TTTTTCT
50980692 GTAAAAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTTTCTTTTCGAT
Found at i:50981514 original size:18 final size:18
Alignment explanation
Indices: 50981493--50981528 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
50981483 TCTGTTATTT
50981493 TATTT-TTTTGTATATATG
1 TATTTGTTTT-TATATATG
50981511 TATTTGTTTTTATATATG
1 TATTTGTTTTTATATATG
50981529 ATTAACTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (18 bp):
TATTTGTTTTTATATATG
Found at i:50984378 original size:20 final size:20
Alignment explanation
Indices: 50984355--50984392 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
50984345 ACACATGGAT
*
50984355 GTGTAGACCACCACACGGGC
1 GTGTAAACCACCACACGGGC
*
50984375 GTGTAAACCTCCACACGG
1 GTGTAAACCACCACACGG
50984393 TTGGGGCACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (20 bp):
GTGTAAACCACCACACGGGC
Found at i:50986482 original size:21 final size:21
Alignment explanation
Indices: 50986456--50986495 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50986446 TTTAGTAAAA
50986456 TTGTAATTTAGTCCTAATTAT
1 TTGTAATTTAGTCCTAATTAT
*
50986477 TTGTAATTTGGTCCTAATT
1 TTGTAATTTAGTCCTAATT
50986496 TATCCATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (21 bp):
TTGTAATTTAGTCCTAATTAT
Found at i:50992135 original size:13 final size:13
Alignment explanation
Indices: 50992117--50992144 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50992107 GAATAGAAGT
50992117 GATAACAAAAATG
1 GATAACAAAAATG
50992130 GATAACAAAAATG
1 GATAACAAAAATG
50992143 GA
1 GA
50992145 AATAATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.07, G:0.18, T:0.14
Consensus pattern (13 bp):
GATAACAAAAATG
Found at i:50992950 original size:616 final size:615
Alignment explanation
Indices: 50991266--50993074 Score: 2486
Period size: 618 Copynumber: 2.9 Consensus size: 615
50991256 CAAAAAAAAC
* * * *
50991266 TTACTATCATCTATAAGAATTGCCACTTTTTGAAAAGCAAAGGCAAGGGGTTTGAAGAACTTCCA
1 TTACTATCATCTACAAGAATTGCCACTTTTTGAAAAGCAAA-GTAAGGGGATTGAAGAACTTCCC
* * * * *
50991331 ATTTGTCAATTCTG-CTGAGACTGCAGAACCCATGATTGAAGTAATGATCAACAAAAAAATAACT
65 ATTTTTCGATTCTGTC-GAGACTGCAGAATCCATGATTGAAGCAATGATCAACAAAAAAATAGCT
* *
50991395 TTGATACCATACTAGAAATATAAAAGAAAAAGAGTAATTCATTAATCATACTCTTAGAATATAGG
129 TTGATACCATACTAGAAATAT-AGAGAAGAAGAGTAATTCATTAATCATACTCTTAGAATATAGG
* * *
50991460 GGCC-TGTGTATTTATACACTAGAGGCTTAACAGAAGTTATAACAAAAATGGATAACATAAATGG
193 GGCCTTGTGTATTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGGATAACAAAAATGG
* *
50991524 AAACTACACATAACTAGATTTAGTTGAGCCTAACTTACAACAATTATCTAGTTACTTCCTCTAAT
258 AAACTACTCATAACTAGATTTAGTTGAGCCTAACTT--AAC---TATCTAGTTACTTCCTCTACT
* * * *
50991589 ATTCCATTGGTA-CAGGGAGGGGAACCAAGTAGCTAATAGTATGGTTGCCTTTGTCGGAAATCTC
318 ATTCCATAGGTATTA-GGAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTC
* * *
50991653 CCTTTACGCCTTCATGTTTGTGCATCTCCCTATGACTTTATTTTAAAAGGCTCTATATGATGTTT
382 CCTTTACGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATT
* *
50991718 GTAGCATGGTTTTGCCTAGATTAGTTACTATGTCATTGTTTTATTTTCC--CCATTTTAAAAAAA
447 GTAGCATGGTTTTGCCTAGATTAGTTACTATGTAATTGTTCTATTTTCCTTCCATTTTAAAAAAA
** * *
50991781 ATAAATTCAATTATTGAAATGCAATCAATCATAAAAAAAAATTGATA-ATTTTTTTTGGGTGTAA
512 ATAAATTCAACGATTGAAATGCATTC-ATCATACAAAAAAATTGATACATTTTTTTTGGGTGTAA
*
50991845 ATTCAAGATGTTTGGAAGTTACATTTAACTTGAGACGAAG
576 ATTCAAGATGTTTGGAAGTTACATTCAACTTGAGACGAAG
* * *
50991885 TTACTATCATCTACAAGAATTGCCGCTTTTTGAGAAGCAAAGATAAGGGGATTGGAGAACTTCCC
1 TTACTATCATCTACAAGAATTGCCACTTTTTGAAAAGCAAAG-TAAGGGGATTGAAGAACTTCCC
* * * * *
50991950 ATTTGTT-GATTTTTTTGAGACTGTAGAATCCATGATTGAAGCAATGATCGACAAAAAAATAGCT
65 ATTT-TTCGATTCTGTCGAGACTGCAGAATCCATGATTGAAGCAATGATCAACAAAAAAATAGCT
*
50992014 TTGATACCATACTAGAAATATAGAAGAAGAAGAGTAATTCATTAATAATACTCTTAGAATATAGG
129 TTGATACCATACTAGAAATATAG-AGAAGAAGAGTAATTCATTAATCATACTCTTAGAATATAGG
* *
50992079 GGCCTTGTGTATTTATACACTAGG-GGCTGAATAGAAGTGATAACAAAAATGGATAACAAAAATG
193 GGCCTTGTGTATTTATACACT-GGAGGCTTAACAGAAGTGATAACAAAAATGGATAACAAAAATG
* *
50992143 GAAA-TAAT-ATAACTAGATTTACTTGAGCCTAACTTATAGAACTTATCTAGTTACTTCCTCTAC
257 GAAACTACTCATAACTAGATTTAGTTGAGCCTAAC-T-T--AAC-TATCTAGTTACTTCCTCTAC
* * * *
50992206 TATTCCATAGGT-TTAAGAAGGGGAACCAAGTAGCTAATATCATGGTTGTCTTTGATGGAAATCT
317 TATTCCATAGGTATT-AGGAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCT
* *
50992270 CCCTTTACGCCTTCATGTTTATTCATCTCTCTATGAATTTATTTTAAAAGGCTCTATATGATGAT
381 CCCTTTACGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGAT
* **
50992335 TGTAGCATGGCTTTGCCTAGATTAGTTACTATGTAATTGTTCTATTTTCCTTCTTTTTTAAAAAA
446 TGTAGCATGGTTTTGCCTAGATTAGTTACTATGTAATTGTTCTATTTTCCTTCCATTTTAAAAAA
50992400 AATAAATTCAACGATTGAAATGCATTCAGTCATACAAAAAAATTGATACATTTTCTTTT-GGTGT
511 AATAAATTCAACGATTGAAATGCATTCA-TCATACAAAAAAATTGATACATTTT-TTTTGGGTGT
*
50992464 AAATTCAAGATGTTTGGAAGTTACATTCCACTTGAGACGCAAG
574 AAATTCAAGATGTTTGGAAGTTACATTCAACTTGAGACG-AAG
*
50992507 TTACTATCATTTACAAGAATTGCCACTTTTTGAAAAGCAAATGTAAGGGGATTGAAGAACTTCCC
1 TTACTATCATCTACAAGAATTGCCACTTTTTGAAAAGCAAA-GTAAGGGGATTGAAGAACTTCCC
* *
50992572 ATTTTTCGATTCTGTCGAGATTGCAGAATCCATGATTGAAGCAACGATCAACAAAAAAAATAGCT
65 ATTTTTCGATTCTGTCGAGACTGCAGAATCCATGATTGAAGCAATGATCAAC-AAAAAAATAGCT
** * * * * * *
50992637 TTGATAATATACTAGAAATATAGAGTAAGAAGAGTAATTGATTAATCGTACTCATAAAATACAAG
129 TTGATACCATACTAGAAATATAGAG-AAGAAGAGTAATTCATTAATCATACTCTTAGAATATAGG
* *
50992702 GGCCTTGTGTATTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGGATAATAGAAATGG
193 GGCCTTGTGTATTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGGATAACAAAAATGG
* *
50992767 AAACTACTCATAACTAGATTTAGTTGAGCCTAACTT-AC-AGC-AGTT-CTTCCTTTACTATTCC
258 AAACTACTCATAACTAGATTTAGTTGAGCCTAACTTAACTATCTAGTTACTTCCTCTACTATTCC
* *
50992828 ATAGGTATTAGGAGGGGAACCAAGTAGCTAATAGCATGGCTG-CTTGTGTTGGAAATCTCCTTTT
323 ATAGGTATTAGGAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTT-TGTTGGAAATCTCCCTTT
*
50992892 ATGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGC
387 ACGCCTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGC
* * *
50992957 ATGGTTTTGCCTAGATTAGTTACTATGTAATCGTTCTA--TTCCTTCCCCCTTTAAAAAAAAATT
452 ATGGTTTTGCCTAGATTAGTTACTATGTAATTGTTCTATTTTCCTT--CCATTTTAAAAAAAA-T
* * ** *
50993020 AAATTCAACGATTGCAATGCAATGCTATCATACAAAAGCATTGATACATATTTTT
514 AAATTCAACGATTGAAATGC-ATTC-ATCATACAAAAAAATTGATACATTTTTTT
50993075 CCTCTTCATT
Statistics
Matches: 1060, Mismatches: 100, Indels: 62
0.87 0.08 0.05
Matches are distributed among these distances:
614 6 0.01
615 3 0.00
616 177 0.17
617 29 0.03
618 233 0.22
619 177 0.17
620 117 0.11
621 50 0.05
622 112 0.11
623 128 0.12
624 4 0.00
625 24 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (615 bp):
TTACTATCATCTACAAGAATTGCCACTTTTTGAAAAGCAAAGTAAGGGGATTGAAGAACTTCCCA
TTTTTCGATTCTGTCGAGACTGCAGAATCCATGATTGAAGCAATGATCAACAAAAAAATAGCTTT
GATACCATACTAGAAATATAGAGAAGAAGAGTAATTCATTAATCATACTCTTAGAATATAGGGGC
CTTGTGTATTTATACACTGGAGGCTTAACAGAAGTGATAACAAAAATGGATAACAAAAATGGAAA
CTACTCATAACTAGATTTAGTTGAGCCTAACTTAACTATCTAGTTACTTCCTCTACTATTCCATA
GGTATTAGGAGGGGAACCAAGTAGCTAATAGCATGGTTGCCTTTGTTGGAAATCTCCCTTTACGC
CTTCATGTTTATGCATCTCTCTATGACTTTATTTTAAAAGGCTCTATATGATGATTGTAGCATGG
TTTTGCCTAGATTAGTTACTATGTAATTGTTCTATTTTCCTTCCATTTTAAAAAAAATAAATTCA
ACGATTGAAATGCATTCATCATACAAAAAAATTGATACATTTTTTTTGGGTGTAAATTCAAGATG
TTTGGAAGTTACATTCAACTTGAGACGAAG
Found at i:50993342 original size:20 final size:20
Alignment explanation
Indices: 50993317--50993385 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
50993307 GTATCCCTTT
*
50993317 ATAATTTTTTATGCATCCTC
1 ATAATTTTTTATGCTTCCTC
*
50993337 ATAATTTTTTATACTTCCTC
1 ATAATTTTTTATGCTTCCTC
*
50993357 ATATTTTTTTGATG-TTCCCTC
1 ATAATTTTTT-ATGCTT-CCTC
50993378 ATAATTTT
1 ATAATTTT
50993386 AAAAGGAGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
20 29 0.69
21 13 0.31
ACGTcount: A:0.23, C:0.17, G:0.04, T:0.55
Consensus pattern (20 bp):
ATAATTTTTTATGCTTCCTC
Found at i:50993863 original size:9 final size:9
Alignment explanation
Indices: 50993846--50993876 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
50993836 TTATTAGTAT
50993846 ATATAAAAA
1 ATATAAAAA
*
50993855 ATATTAAAA
1 ATATAAAAA
50993864 ATATAAAAA
1 ATATAAAAA
50993873 ATAT
1 ATAT
50993877 TTTTATATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
ATATAAAAA
Found at i:50993897 original size:19 final size:20
Alignment explanation
Indices: 50993875--50993918 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50993865 TATAAAAAAT
50993875 ATTTTT-ATATCAAAAATTA
1 ATTTTTCATATCAAAAATTA
* *
50993894 ATTTTTCATGTCAAAATTTA
1 ATTTTTCATATCAAAAATTA
50993914 ATTTT
1 ATTTT
50993919 GAAAGCATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTTCATATCAAAAATTA
Found at i:50993936 original size:20 final size:19
Alignment explanation
Indices: 50993913--50993962 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
50993903 GTCAAAATTT
50993913 AATTTTGAAAGCATACCTAA
1 AATTTTGAAAGCATA-CTAA
*
50993933 AATTTT-AATGGCATACTAA
1 AATTTTGAA-AGCATACTAA
50993952 AATTTATGAAA
1 AATTT-TGAAA
50993963 AAAATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 11 0.44
20 12 0.48
21 2 0.08
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (19 bp):
AATTTTGAAAGCATACTAA
Found at i:50996046 original size:21 final size:21
Alignment explanation
Indices: 50996014--50996054 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
50996004 AGGCTCGAGG
50996014 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
50996035 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
50996055 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:51014583 original size:25 final size:25
Alignment explanation
Indices: 51014536--51014584 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51014526 TAATACAAAT
* *
51014536 AATTACTTTTAAATAAGTTAAATAA
1 AATTACTTTTAAAAAAGTAAAATAA
51014561 AATTACTTTTTAAAAAAG-AAAATA
1 AATTAC-TTTTAAAAAAGTAAAATA
51014585 GAGAGAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (25 bp):
AATTACTTTTAAAAAAGTAAAATAA
Found at i:51018523 original size:16 final size:16
Alignment explanation
Indices: 51018498--51018529 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51018488 TATAATTAAG
*
51018498 AAATTTTTTAAAAAAT
1 AAATTATTTAAAAAAT
51018514 AAATTATTTAAAAAAT
1 AAATTATTTAAAAAAT
51018530 TCAACATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTATTTAAAAAAT
Found at i:51022854 original size:5 final size:5
Alignment explanation
Indices: 51022844--51022870 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
51022834 AGCACTGCCT
51022844 AACCC AACCC AACCC AACCC AACCC AA
1 AACCC AACCC AACCC AACCC AACCC AA
51022871 AGTTAGGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (5 bp):
AACCC
Found at i:51027042 original size:27 final size:26
Alignment explanation
Indices: 51026999--51027049 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
51026989 AGAAAAACAA
51026999 AGAGAAGAAGAAGAAAAGAGAATTTG
1 AGAGAAGAAGAAGAAAAGAGAATTTG
51027025 AGAGAGAGAAG-AGAAAAAGAGAATT
1 AGAGA-AGAAGAAG-AAAAGAGAATT
51027050 CTAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.59, C:0.00, G:0.31, T:0.10
Consensus pattern (26 bp):
AGAGAAGAAGAAGAAAAGAGAATTTG
Found at i:51029422 original size:16 final size:17
Alignment explanation
Indices: 51029393--51029463 Score: 51
Period size: 18 Copynumber: 4.2 Consensus size: 17
51029383 TATAAAATGT
51029393 ATATAAAA-AT-TATAAA
1 ATATAAAATATATAT-AA
51029409 ATATAAAATATATATAA
1 ATATAAAATATATATAA
* * *
51029426 GTATGTACATATATATAA
1 ATAT-AAAATATATATAA
*
51029444 ATAAATAAAT-TATA-AA
1 ATATA-AAATATATATAA
51029460 ATAT
1 ATAT
51029464 GTACGTATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
16 13 0.30
17 11 0.26
18 19 0.44
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (17 bp):
ATATAAAATATATATAA
Found at i:51029557 original size:3 final size:3
Alignment explanation
Indices: 51029549--51029573 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51029539 TATATGAGGA
51029549 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
51029574 GATTTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Done.