Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 172 of 185
Found at i:52424454 original size:51 final size:51
Alignment explanation
Indices: 52424399--52424499 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
52424389 CGGTAATTCA
* * * *
52424399 GGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGCAACTCG
1 GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTCG
* *
52424450 GGAGCCTTGGGCAACTCTGGCTTGGGCACCTCGGGAACTTTAGGCAACTC
1 GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTC
52424500 TGGCTTTGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (51 bp):
GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTCG
Found at i:52424496 original size:33 final size:34
Alignment explanation
Indices: 52424436--52424523 Score: 99
Period size: 33 Copynumber: 2.6 Consensus size: 34
52424426 ACCTCAGGAA
* * * * *
52424436 CTTTTGGCAACTCGGGAGCCTTGGGCAACTCTGG
1 CTTTGGGCACCTCGGGAACTTTAGGCAACTCTGG
52424470 C-TTGGGCACCTCGGGAACTTTAGGCAACTCTGG
1 CTTTGGGCACCTCGGGAACTTTAGGCAACTCTGG
**
52424503 CTTTGGTAACC-CGGGAACTTT
1 CTTTGGGCACCTCGGGAACTTT
52424524 TGGTGCTTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
33 38 0.83
34 8 0.17
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.27
Consensus pattern (34 bp):
CTTTGGGCACCTCGGGAACTTTAGGCAACTCTGG
Found at i:52424667 original size:51 final size:51
Alignment explanation
Indices: 52424612--52424760 Score: 217
Period size: 51 Copynumber: 2.9 Consensus size: 51
52424602 AGGTTTTTTC
* *
52424612 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGCACTTTTGGA
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
* * * *
52424663 AACTCAGGAACCTTAGGTAGTTCAGGTTTTGGCAATTCTGGCACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
* * *
52424714 AACTCGGGAACCTTAGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTT
52424761 AGGCAATTCG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (51 bp):
AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
Found at i:52424795 original size:33 final size:33
Alignment explanation
Indices: 52424714--52424811 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 33
52424704 CACTTTCGGA
* * *
52424714 AACTCGGGAACCTTAGGCAATTCAGGTTTTGGC
1 AACTCAGGAACTTTAGGCAATTCGGGTTTTGGC
* *
52424747 AACTCCGGAACTTTAGGCAATTCGGGCTTTGGC
1 AACTCAGGAACTTTAGGCAATTCGGGTTTTGGC
* * * *
52424780 AACTCAGGCATTTTAGGTATTTCGGGTTTTGG
1 AACTCAGGAACTTTAGGCAATTCGGGTTTTGG
52424812 GATTTCCGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (33 bp):
AACTCAGGAACTTTAGGCAATTCGGGTTTTGGC
Found at i:52426121 original size:74 final size:74
Alignment explanation
Indices: 52425994--52426140 Score: 226
Period size: 74 Copynumber: 2.0 Consensus size: 74
52425984 CTATTTTGTT
* * * *
52425994 TTTTTAATAAGTGAGTTGCATCTCGAACCTTTTAGACCGAATCAAATGGGATTCGGGTCACACAA
1 TTTTTAACAAGTGAGTTGCATCTCGAACCTTTTAGACCGAATCAAACGAGATTCGAGTCACACAA
52426059 CTCTAACAG
66 CTCTAACAG
52426068 TTTTTAACAAGTGAGTTGCA-CTTCGAA-CTTTTCAGACCGAATCAAACGAGATTCGAGTCACAC
1 TTTTTAACAAGTGAGTTGCATC-TCGAACCTTTT-AGACCGAATCAAACGAGATTCGAGTCACAC
52426131 AACTCTAACA
64 AACTCTAACA
52426141 ATTTATAAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
73 6 0.09
74 61 0.91
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (74 bp):
TTTTTAACAAGTGAGTTGCATCTCGAACCTTTTAGACCGAATCAAACGAGATTCGAGTCACACAA
CTCTAACAG
Found at i:52426933 original size:18 final size:20
Alignment explanation
Indices: 52426902--52426940 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
52426892 ATCCTCATAA
*
52426902 TTTTAGTATTTTTA-AATTT
1 TTTTAGTATATTTATAATTT
52426921 TTTTA-TATATTTATAATTT
1 TTTTAGTATATTTATAATTT
52426940 T
1 T
52426941 CCATACTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTAGTATATTTATAATTT
Found at i:52427346 original size:20 final size:20
Alignment explanation
Indices: 52427298--52427347 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
52427288 TCGTATTTCT
* *
52427298 TCATAATTTTTTTGTATTCTC
1 TCATAA-TTTTTAGTACTCTC
52427319 TCGA-AATTTTTAGTACTCTC
1 TC-ATAATTTTTAGTACTCTC
52427339 TCATAATTT
1 TCATAATTT
52427348 ATGGTGTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 1 0.04
20 19 0.76
21 4 0.16
22 1 0.04
ACGTcount: A:0.24, C:0.16, G:0.06, T:0.54
Consensus pattern (20 bp):
TCATAATTTTTAGTACTCTC
Found at i:52427661 original size:21 final size:21
Alignment explanation
Indices: 52427635--52427683 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
52427625 ATATCTTCAT
**
52427635 ATTTTTTGGTACTTCCTCGGA
1 ATTTTTTGGTACTTCCTCAAA
52427656 A-TTTTTGGTACTTCCTCAAA
1 ATTTTTTGGTACTTCCTCAAA
52427676 ATTTTTTG
1 ATTTTTTG
52427684 TATTCGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.51
Consensus pattern (21 bp):
ATTTTTTGGTACTTCCTCAAA
Found at i:52427990 original size:22 final size:21
Alignment explanation
Indices: 52427965--52428011 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
52427955 TCCCTCTTTT
52427965 TTTTTTCTATATTTCCTCAAAA
1 TTTTTT-TATATTTCCTCAAAA
* *
52427987 -TTTTTTGTATTTCCTCATAA
1 TTTTTTTATATTTCCTCAAAA
52428007 TTTTT
1 TTTTT
52428012 AGTACTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.21, C:0.15, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTTTATATTTCCTCAAAA
Found at i:52427997 original size:20 final size:20
Alignment explanation
Indices: 52427974--52428011 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
52427964 TTTTTTTCTA
52427974 TATTTCCTCAAAATTTTTTG
1 TATTTCCTCAAAATTTTTTG
*
52427994 TATTTCCTCATAATTTTT
1 TATTTCCTCAAAATTTTT
52428012 AGTACTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.03, T:0.58
Consensus pattern (20 bp):
TATTTCCTCAAAATTTTTTG
Found at i:52429201 original size:3 final size:3
Alignment explanation
Indices: 52429193--52429236 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
52429183 TATTAAAAGA
52429193 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
52429237 AAGAAGAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:52432455 original size:12 final size:12
Alignment explanation
Indices: 52432438--52432476 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
52432428 TGCAAAATAG
52432438 TATTATATATTA
1 TATTATATATTA
* *
52432450 TTTTATATATAA
1 TATTATATATTA
*
52432462 TAATATATATTA
1 TATTATATATTA
52432474 TAT
1 TAT
52432477 GAAAGAGAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATATATTA
Found at i:52432634 original size:7 final size:7
Alignment explanation
Indices: 52432614--52432677 Score: 62
Period size: 7 Copynumber: 8.9 Consensus size: 7
52432604 TTGTTATTTA
52432614 ATATT-T
1 ATATTAT
52432620 ATATTAT
1 ATATTAT
52432627 A-ATATAT
1 ATAT-TAT
52432634 ATAATTTAT
1 AT-A-TTAT
52432643 ATATTAGT
1 ATATTA-T
52432651 ATATTAT
1 ATATTAT
52432658 ATCA-TAT
1 AT-ATTAT
52432665 ATATTAT
1 ATATTAT
52432672 ATATTA
1 ATATTA
52432678 CAAGGTTCTG
Statistics
Matches: 50, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
6 8 0.16
7 26 0.52
8 9 0.18
9 6 0.12
10 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (7 bp):
ATATTAT
Found at i:52432646 original size:29 final size:29
Alignment explanation
Indices: 52432608--52432677 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 29
52432598 ATTATATTGT
52432608 TATTTA-ATATT-TATATTATAAT-ATATA
1 TATTTATATATTATATATTAT-ATCATATA
52432635 TAATTTATATATTAGTATATTATATCATATA
1 T-ATTTATATATTA-TATATTATATCATATA
52432666 TA-TTATATATTA
1 TATTTATATATTA
52432678 CAAGGTTCTG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 1 0.03
28 5 0.13
29 15 0.39
30 3 0.08
31 14 0.37
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (29 bp):
TATTTATATATTATATATTATATCATATA
Found at i:52432654 original size:31 final size:29
Alignment explanation
Indices: 52432619--52432677 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
52432609 ATTTAATATT
52432619 TATATTATAAT-ATATATAATTTATATATTAG
1 TATATTAT-ATCATATAT-A-TTATATATTAG
52432650 TATATTATATCATATATATTATATATTA
1 TATATTATATCATATATATTATATATTA
52432678 CAAGGTTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 10 0.37
30 3 0.11
31 14 0.52
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (29 bp):
TATATTATATCATATATATTATATATTAG
Found at i:52435057 original size:33 final size:32
Alignment explanation
Indices: 52435005--52435258 Score: 168
Period size: 33 Copynumber: 7.7 Consensus size: 32
52434995 GTTAGGCAAT
* * * *
52435005 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAGC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52435038 TCAGGAGTTTTGGGCAATTCTGGTTTCGGTACC
1 TCAGGAATTTT-GGCAATTCAGGTTTTGGTAAC
* * * *
52435071 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAAC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52435104 TCGGGAATTTTAGGTAATTGAGGTTTTGGTAAT
1 TCAGGAATTTT-GGCAATTCAGGTTTTGGTAAC
* * * * * *
52435137 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACC
1 TCAGGA-ATTTTGGCAATTCAGGTTTTGGTAAC
* *
52435170 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAAC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52435203 TCAGTCG-CTTTGGGCAATTCTGGTTTTGGTACC
1 TCAG--GAATTTTGGCAATTCAGGTTTTGGTAAC
52435236 TCAGGAATTTTTGGCAATTCAGG
1 TCAGGAA-TTTTGGCAATTCAGG
52435259 AGCTTTGGGC
Statistics
Matches: 167, Mismatches: 45, Indels: 18
0.73 0.20 0.08
Matches are distributed among these distances:
31 1 0.01
32 6 0.04
33 152 0.91
34 7 0.04
35 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (32 bp):
TCAGGAATTTTGGCAATTCAGGTTTTGGTAAC
Found at i:52435129 original size:66 final size:66
Alignment explanation
Indices: 52435005--52435258 Score: 222
Period size: 66 Copynumber: 3.8 Consensus size: 66
52434995 GTTAGGCAAT
* * * * * * *
52435005 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAGCTCAGGAGTTTTGGGCAATTCTGGTTTCGGTAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
52435070 C
66 C
* ** * * * *
52435071 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
*
52435136 T
66 C
* * * * * * * *
52435137 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTT-GGTAATTCAGGTTTTGGCA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAA-TTTTAGGCAATTCAGGTTTCGGTA
52435201 AC
65 AC
*** * * * *
52435203 TCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTTGGCAATTCAGG
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGG
52435259 AGCTTTGGGC
Statistics
Matches: 152, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
65 4 0.03
66 144 0.95
67 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (66 bp):
TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
C
Found at i:52435204 original size:99 final size:99
Alignment explanation
Indices: 52434999--52435255 Score: 264
Period size: 99 Copynumber: 2.6 Consensus size: 99
52434989 CGGCATGTTA
* * *
52434999 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTTGGCAGCTCAGGAGTTTTGGGCAATTCTGGTTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
* * * *
52435064 CGGTACCTCTGGAACTTTAGGCAATTCTGGTTTT
66 AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
** * * * * *
52435098 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAATTCAGGAGCTTTT-GGCAATTCTGGCT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAG-TTTTGGGCAATTCTGGCT
* *
52435162 TAGGCACCTCAGGAACTTTTGGTAATTCAGGTTTT
65 TAGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
*** * * * * * * *
52435197 GGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTTGGCAATTC
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTC
52435256 AGGAGCTTTG
Statistics
Matches: 126, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
98 4 0.03
99 118 0.94
100 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (99 bp):
GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
Found at i:52435264 original size:51 final size:51
Alignment explanation
Indices: 52435193--52435306 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
52435183 GTAATTCAGG
* ** * * * * *
52435193 TTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAAT
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
*
52435244 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCATGAAC
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
*
52435295 TTTAGGCAATTC
1 TTTTGGCAATTC
52435307 TGATTTTGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (51 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
Found at i:52435273 original size:84 final size:83
Alignment explanation
Indices: 52435170--52435333 Score: 195
Period size: 84 Copynumber: 2.0 Consensus size: 83
52435160 CTTAGGCACC
* * * * * *
52435170 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGTCG-CTTTGGGCAATTCTGGTTTTGGTA
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCA-T-GACTTTAGGCAATTCTGATTTTGGTA
* *
52435234 CCTCAGGAATTTTTGGCAAT
64 ACTCAGGAACTTTTGGCAAT
* * *
52435254 TCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCATGAACTTTAGGCAATTCTGATTTTGGTAA
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCATG-ACTTTAGGCAATTCTGATTTTGGTAA
52435319 CTCAGGAACTTTTGG
65 CTCAGGAACTTTTGG
52435334 TGATTCAAGT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
82 1 0.01
83 1 0.01
84 65 0.97
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.35
Consensus pattern (83 bp):
TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCATGACTTTAGGCAATTCTGATTTTGGTAAC
TCAGGAACTTTTGGCAAT
Found at i:52435346 original size:117 final size:117
Alignment explanation
Indices: 52435127--52435489 Score: 437
Period size: 117 Copynumber: 3.1 Consensus size: 117
52435117 GTAATTGAGG
* * * *
52435127 TTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* *** * ** * * * *
52435192 GTTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAAT
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCAGGAAC
* * *
52435244 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCATGAACTTTAGGCAATTCTG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * * *
52435309 ATTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGC
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCAGGAAC
* * *
52435361 TTTGGGTAATTCA-G-GC-TTGGGCAATTCTGGCTTAGGTAACTCAGGAACTTTAGGCAATTCTG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * *
52435423 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGC
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCAGGAAC
52435475 -TTTGAGTAATTCAGG
1 TTTTG-GTAATTCAGG
52435490 CTTAGGCACT
Statistics
Matches: 212, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
113 3 0.01
114 99 0.47
115 3 0.01
116 1 0.00
117 106 0.50
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (117 bp):
TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCAGGAAC
Found at i:52435347 original size:33 final size:33
Alignment explanation
Indices: 52435244--52435373 Score: 91
Period size: 33 Copynumber: 3.9 Consensus size: 33
52435234 CCTCAGGAAT
* * * **
52435244 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGG
1 TTTTGGCAACTCAGGAACTTTGGGTAATTCAAG
* * * * * * *
52435277 CTTAGGCACCTCATGAACTTTAGGCAATTC-TG
1 TTTTGGCAACTCAGGAACTTTGGGTAATTCAAG
* * *
52435309 ATTTTGGTAACTCAGGAACTTTTGGTGATTCAAG
1 -TTTTGGCAACTCAGGAACTTTGGGTAATTCAAG
* *
52435343 TTTTGGCAACTCGGGAGCTTTGGGTAATTCA
1 TTTTGGCAACTCAGGAACTTTGGGTAATTCA
52435374 GGCTTGGGCA
Statistics
Matches: 73, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
32 1 0.01
33 71 0.97
34 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (33 bp):
TTTTGGCAACTCAGGAACTTTGGGTAATTCAAG
Found at i:52435418 original size:114 final size:117
Alignment explanation
Indices: 52435131--52435489 Score: 454
Period size: 114 Copynumber: 3.1 Consensus size: 117
52435121 TTGAGGTTTT
* * * *
52435131 GGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAGGTTT
1 GGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGTTT
* *** * ** * * * * ** *
52435196 TGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTT
66 TGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTG
* * * *
52435248 GGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCATGAACTTTAGGCAATTCTGATTT
1 GGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGTTT
*
52435313 TGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTTG
66 TGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTG
* * *
52435365 GGTAATTCA-G-GC-TTGGGCAATTCTGGCTTAGGTAACTCAGGAACTTTAGGCAATTCTGGCTT
1 GGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGTTT
52435427 TGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTG
66 TGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTG
*
52435479 AGTAATTCAGG
1 GGTAATTCAGG
52435490 CTTAGGCACT
Statistics
Matches: 209, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
114 103 0.49
115 3 0.01
116 1 0.00
117 102 0.49
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (117 bp):
GGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGGTTT
TGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTG
Found at i:52435422 original size:33 final size:33
Alignment explanation
Indices: 52435380--52435543 Score: 154
Period size: 33 Copynumber: 5.0 Consensus size: 33
52435370 TTCAGGCTTG
*
52435380 GGCAATTCTGGCTTAGGTAACTCAGGAACTTTA
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
*
52435413 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
** * * * * *
52435446 GGTGATTCAGGTTTTGGCAACTCGGGAGCTTT-
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * * *
52435478 GAGTAATTCAGGCTTAGG-CACTTCAGGAACTTTA
1 G-GCAATTCTGGCTTTGGTAAC-TCAGGAACTTTA
*
52435512 GGAAATTCTGGCTTTGGTAACTCCA-GAACTTT
1 GGCAATTCTGGCTTTGGTAACT-CAGGAACTTT
52435544 TGGTGCTTCA
Statistics
Matches: 107, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
32 3 0.03
33 99 0.93
34 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (33 bp):
GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
Found at i:52435429 original size:81 final size:81
Alignment explanation
Indices: 52435299--52435465 Score: 190
Period size: 81 Copynumber: 2.1 Consensus size: 81
52435289 ATGAACTTTA
* * * ** * * *
52435299 GGCAATTCTGATTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGCAACTCGGGAGCTTT
1 GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTT
52435364 GGGTAATTCAGGCTTG
66 GGGTAATTCAGGCTTG
* ** *
52435380 GGCAATTCTGGCTTAGGTAACTCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTT
1 GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTT
* * * *
52435445 TGGTGATTCAGGTTTT
66 GGGTAATTCAGGCTTG
52435461 GGCAA
1 GGCAA
52435466 CTCGGGAGCT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.35
Consensus pattern (81 bp):
GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGCAACTCAGGAACTTT
GGGTAATTCAGGCTTG
Found at i:52435446 original size:99 final size:99
Alignment explanation
Indices: 52435343--52435546 Score: 211
Period size: 99 Copynumber: 2.1 Consensus size: 99
52435333 GTGATTCAAG
* * * *
52435343 TTTTGGCAACTCGGGAGCTTTGGGTAATTC-AG-GC-TTGGGCAATTCTGGCTTAGGTAAC-TCA
1 TTTTGGCAACTC---AGCTTTGGGCAACTCGAGAGCTTTGAGCAATTCAGGCTTAGG-AACTTCA
*
52435404 GGAACTTTAGGCAATTCTGGCTTTGGTAACT-CAGGAAC
62 GGAACTTTAGGAAATTCTGGCTTTGGTAACTCCA-GAAC
** * * * * * *
52435442 TTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTGAGTAATTCAGGCTTAGGCACTTCAGGAA
1 TTTTGGCAACTCAGCTTTGGGCAACTCGAGAGCTTTGAGCAATTCAGGCTTAGGAACTTCAGGAA
52435507 CTTTAGGAAATTCTGGCTTTGGTAACTCCAGAAC
66 CTTTAGGAAATTCTGGCTTTGGTAACTCCAGAAC
52435541 TTTTGG
1 TTTTGG
52435547 TGCTTCAGAT
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
96 11 0.13
97 1 0.01
98 4 0.05
99 69 0.79
100 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (99 bp):
TTTTGGCAACTCAGCTTTGGGCAACTCGAGAGCTTTGAGCAATTCAGGCTTAGGAACTTCAGGAA
CTTTAGGAAATTCTGGCTTTGGTAACTCCAGAAC
Found at i:52435448 original size:18 final size:18
Alignment explanation
Indices: 52435395--52435448 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
52435385 TTCTGGCTTA
*
52435395 GGTAACTCAGGAACTTTA
1 GGTAACTCAGGAACTTTT
* * *
52435413 GGCAATTCTGG--C-TTT
1 GGTAACTCAGGAACTTTT
52435428 GGTAACTCAGGAACTTTT
1 GGTAACTCAGGAACTTTT
52435446 GGT
1 GGT
52435449 GATTCAGGTT
Statistics
Matches: 26, Mismatches: 7, Indels: 6
0.67 0.18 0.15
Matches are distributed among these distances:
15 10 0.38
16 1 0.04
17 1 0.04
18 14 0.54
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (18 bp):
GGTAACTCAGGAACTTTT
Found at i:52435600 original size:99 final size:99
Alignment explanation
Indices: 52435383--52435577 Score: 250
Period size: 99 Copynumber: 2.0 Consensus size: 99
52435373 AGGCTTGGGC
* * *
52435383 AATTCTGGCTTAGGTAAC-TCAGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTG
1 AATTCAGGCTTAGG-CACTTCAGGAACTTTAGGAAATTCTGGCTTTGGTAACTCAGGAACTTTTG
* * * * * *
52435447 GTGATTCAGGTTTTGGCAACTCGGGAGCTTTGAGT
65 GTGATTCAGATTTTGACAACTCAGAAGCATTGAGG
52435482 AATTCAGGCTTAGGCACTTCAGGAACTTTAGGAAATTCTGGCTTTGGTAACTCCA-GAACTTTTG
1 AATTCAGGCTTAGGCACTTCAGGAACTTTAGGAAATTCTGGCTTTGGTAACT-CAGGAACTTTTG
* * *
52435546 GTGCTTCAGATTTTGACAATTTAGAAGCATTG
65 GTGATTCAGATTTTGACAACTCAGAAGCATTG
52435578 GGCATCTCTG
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.02
99 79 0.95
100 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (99 bp):
AATTCAGGCTTAGGCACTTCAGGAACTTTAGGAAATTCTGGCTTTGGTAACTCAGGAACTTTTGG
TGATTCAGATTTTGACAACTCAGAAGCATTGAGG
Found at i:52435746 original size:33 final size:33
Alignment explanation
Indices: 52435679--52435759 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
52435669 CGGGGACCTC
* *
52435679 AGGCAATTCGGGCTTTGGCAACTCCGGAACTTT
1 AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
* * *
52435712 AGGCAATTCAGGTTTTGGCAACTCGGGCATTTT
1 AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
* *
52435745 AGGTATTTCAGGTTT
1 AGGCAATTCAGGTTT
52435760 CGGGATTTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (33 bp):
AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
Found at i:52440936 original size:33 final size:32
Alignment explanation
Indices: 52440884--52441137 Score: 168
Period size: 33 Copynumber: 7.7 Consensus size: 32
52440874 GTTAGGCAAT
* * * *
52440884 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAGC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52440917 TCAGGAGTTTTGGGCAATTCTGGTTTCGGTACC
1 TCAGGAATTTT-GGCAATTCAGGTTTTGGTAAC
* * * *
52440950 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAAC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52440983 TCGGGAATTTTAGGTAATTGAGGTTTTGGTAAT
1 TCAGGAATTTT-GGCAATTCAGGTTTTGGTAAC
* * * * * *
52441016 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACC
1 TCAGGA-ATTTTGGCAATTCAGGTTTTGGTAAC
* *
52441049 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAAC
1 TCAGGAA-TTTTGGCAATTCAGGTTTTGGTAAC
* * * *
52441082 TCAGTCG-CTTTGGGCAATTCTGGTTTTGGTACC
1 TCAG--GAATTTTGGCAATTCAGGTTTTGGTAAC
52441115 TCAGGAATTTTTGGCAATTCAGG
1 TCAGGAA-TTTTGGCAATTCAGG
52441138 AGCTTTGGGC
Statistics
Matches: 167, Mismatches: 45, Indels: 18
0.73 0.20 0.08
Matches are distributed among these distances:
31 1 0.01
32 6 0.04
33 152 0.91
34 7 0.04
35 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (32 bp):
TCAGGAATTTTGGCAATTCAGGTTTTGGTAAC
Found at i:52441008 original size:66 final size:66
Alignment explanation
Indices: 52440884--52441137 Score: 222
Period size: 66 Copynumber: 3.8 Consensus size: 66
52440874 GTTAGGCAAT
* * * * * * *
52440884 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAGCTCAGGAGTTTTGGGCAATTCTGGTTTCGGTAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
52440949 C
66 C
* ** * * * *
52440950 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
*
52441015 T
66 C
* * * * * * * *
52441016 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTT-GGTAATTCAGGTTTTGGCA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAA-TTTTAGGCAATTCAGGTTTCGGTA
52441080 AC
65 AC
*** * * * *
52441082 TCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTTGGCAATTCAGG
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGG
52441138 AGCTTTGGGC
Statistics
Matches: 152, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
65 4 0.03
66 144 0.95
67 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.37
Consensus pattern (66 bp):
TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
C
Found at i:52441083 original size:99 final size:99
Alignment explanation
Indices: 52440878--52441134 Score: 264
Period size: 99 Copynumber: 2.6 Consensus size: 99
52440868 CGGCATGTTA
* * *
52440878 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTTGGCAGCTCAGGAGTTTTGGGCAATTCTGGTTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
* * * *
52440943 CGGTACCTCTGGAACTTTAGGCAATTCTGGTTTT
66 AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
** * * * * *
52440977 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAATTCAGGAGCTTTT-GGCAATTCTGGCT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAG-TTTTGGGCAATTCTGGCT
* *
52441041 TAGGCACCTCAGGAACTTTTGGTAATTCAGGTTTT
65 TAGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
*** * * * * * * *
52441076 GGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTTGGCAATTC
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTC
52441135 AGGAGCTTTG
Statistics
Matches: 126, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
98 4 0.03
99 118 0.94
100 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (99 bp):
GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
Found at i:52441143 original size:51 final size:51
Alignment explanation
Indices: 52441072--52441185 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 51
52441062 GTAATTCAGG
* ** * * * * *
52441072 TTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAAT
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
52441123 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
*
52441174 TTTAGGCAATTC
1 TTTTGGCAATTC
52441186 TGATTTTGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.33
Consensus pattern (51 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAAC
Found at i:52441152 original size:84 final size:84
Alignment explanation
Indices: 52441049--52441212 Score: 202
Period size: 84 Copynumber: 2.0 Consensus size: 84
52441039 CTTAGGCACC
* * * * *** * * *
52441049 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTAC
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGATTTTGGTAA
*
52441114 CTCAGGAATTTTTGGCAAT
66 CTCAGGAACTTTTGGCAAT
* * *
52441133 TCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGATTTTGGTAA
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGATTTTGGTAA
52441198 CTCAGGAACTTTTGG
66 CTCAGGAACTTTTGG
52441213 TGATTCAAGT
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (84 bp):
TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGATTTTGGTAA
CTCAGGAACTTTTGGCAAT
Found at i:52441225 original size:117 final size:117
Alignment explanation
Indices: 52441006--52441368 Score: 428
Period size: 117 Copynumber: 3.1 Consensus size: 117
52440996 GTAATTGAGG
* * * *
52441006 TTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* *** * ** * * * *
52441071 GTTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAAT
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGAAACTCAGGAAC
* *
52441123 TTTTGGCAATTCAGGAGCTTTGGGCAATTCCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * * *
52441188 ATTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGAAACTCGGGAGC
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGAAACTCAGGAAC
* * * *
52441240 TTTGGGTAATTCA-G-GC-TTGGGCAATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * * *
52441302 GCTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGC
66 GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGAAACTCAGGAAC
52441354 -TTTGAGTAATTCAGG
1 TTTTG-GTAATTCAGG
52441369 CTTGGGCACT
Statistics
Matches: 212, Mismatches: 32, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
113 3 0.01
114 98 0.46
115 3 0.01
116 1 0.00
117 107 0.50
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.34
Consensus pattern (117 bp):
TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
GTTTTGGTAACTCAGGAACTTTTGGTGATTCAGGTTTTGGAAACTCAGGAAC
Found at i:52441226 original size:33 final size:33
Alignment explanation
Indices: 52441165--52441252 Score: 88
Period size: 33 Copynumber: 2.7 Consensus size: 33
52441155 GCTTAGGCAC
* * * *
52441165 CTCAGGAACTTTAGGCAATTC-TGATTTTGGTAA
1 CTCAGGAACTTTGGGTAATTCAAG-TTTTGGAAA
* *
52441198 CTCAGGAACTTTTGGTGATTCAAGTTTTGGAAA
1 CTCAGGAACTTTGGGTAATTCAAGTTTTGGAAA
* *
52441231 CTCGGGAGCTTTGGGTAATTCA
1 CTCAGGAACTTTGGGTAATTCA
52441253 GGCTTGGGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 44 0.98
34 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (33 bp):
CTCAGGAACTTTGGGTAATTCAAGTTTTGGAAA
Found at i:52441296 original size:33 final size:33
Alignment explanation
Indices: 52441259--52441422 Score: 152
Period size: 33 Copynumber: 5.0 Consensus size: 33
52441249 TTCAGGCTTG
* *
52441259 GGCAATTCTGGCTTAGGTAACTCGGGAACTTTA
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
*
52441292 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
** * * * * *
52441325 GGTGATTCAGGTTTTGGCAACTCGGGAGCTTT-
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * **
52441357 GAGTAATTCAGGC-TTGGGCACTTCAGGAACTTTA
1 G-GCAATTCTGGCTTTGGTAAC-TCAGGAACTTTA
* *
52441391 GGAAATTCTGGCTTTGGTAACTCCGGAACTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTT
52441423 TGGTGCTTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
32 7 0.07
33 92 0.87
34 7 0.07
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (33 bp):
GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
Found at i:52441296 original size:114 final size:114
Alignment explanation
Indices: 52441142--52441376 Score: 389
Period size: 114 Copynumber: 2.1 Consensus size: 114
52441132 TTCAGGAGCT
* *
52441142 TTGGGCAATTCCGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGATTTTGGTAACTCAGGAAC
1 TTGGGCAATTCCGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGGTAACTCAGGAAC
*
52441207 TTTTGGTGATTCAAGTTTTGGAAACTCGGGAGCTTTGGGTAATTCAGGC
66 TTTTGGTGATTCAAGTTTTGGAAACTCGGGAGCTTTGAGTAATTCAGGC
* * * *
52441256 TTGGGCAATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAAC
1 TTGGGCAATTCCGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGGTAACTCAGGAAC
* *
52441321 TTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTTGAGTAATTCAGGC
66 TTTTGGTGATTCAAGTTTTGGAAACTCGGGAGCTTTGAGTAATTCAGGC
52441370 TTGGGCA
1 TTGGGCA
52441377 CTTCAGGAAC
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.33
Consensus pattern (114 bp):
TTGGGCAATTCCGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGGTAACTCAGGAAC
TTTTGGTGATTCAAGTTTTGGAAACTCGGGAGCTTTGAGTAATTCAGGC
Found at i:52441314 original size:81 final size:81
Alignment explanation
Indices: 52441178--52441344 Score: 181
Period size: 81 Copynumber: 2.1 Consensus size: 81
52441168 AGGAACTTTA
* * * ** * * *
52441178 GGCAATTCTGATTTTGGTAACTCAGGAACTTTTGGTGATTCAAGTTTTGGAAACTCGGGAGCTTT
1 GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGAAACTCAGGAACTTT
52441243 GGGTAATTCAGGCTTG
66 GGGTAATTCAGGCTTG
* * ** *
52441259 GGCAATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTT
1 GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGAAACTCAGGAACTTT
* * * *
52441324 TGGTGATTCAGGTTTT
66 GGGTAATTCAGGCTTG
52441340 GGCAA
1 GGCAA
52441345 CTCGGGAGCT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (81 bp):
GGCAATTCTGACTTAGGTAACTCAGGAACTTTAGGCAATTCAAGCTTTGGAAACTCAGGAACTTT
GGGTAATTCAGGCTTG
Found at i:52441407 original size:66 final size:66
Alignment explanation
Indices: 52441262--52441422 Score: 173
Period size: 66 Copynumber: 2.4 Consensus size: 66
52441252 AGGCTTGGGC
* * * *
52441262 AATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGG
1 AATTCTGGCTTTGGTAACTCGGGAACTTTAGGCAATTCAGGCTTTGGGAACTCAGGAACTTTAGG
*
52441327 T
66 A
* * * * * * *
52441328 GATTCAGGTTTTGGCAACTCGGGAGCTTT-GAGTAATTCAGGC-TTGGGCACTTCAGGAACTTTA
1 AATTCTGGCTTTGGTAACTCGGGAACTTTAG-GCAATTCAGGCTTTGGGAAC-TCAGGAACTTTA
52441391 GGA
64 GGA
*
52441394 AATTCTGGCTTTGGTAACTCCGGAACTTT
1 AATTCTGGCTTTGGTAACTCGGGAACTTT
52441423 TGGTGCTTCA
Statistics
Matches: 75, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
65 7 0.09
66 68 0.91
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (66 bp):
AATTCTGGCTTTGGTAACTCGGGAACTTTAGGCAATTCAGGCTTTGGGAACTCAGGAACTTTAGG
A
Found at i:52441566 original size:51 final size:51
Alignment explanation
Indices: 52441493--52441641 Score: 181
Period size: 51 Copynumber: 2.9 Consensus size: 51
52441483 GGGTTTTTTC
* *
52441493 AACTCGGGAATCTTAGGAAATTCAGGCTTTGGCAACTCTGGCACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGGA
* * * * *
52441544 AACTCAGGAACCTTGGGTAATTCCGGTTTTGGCAACTCTGGAACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGGA
* * * * * *
52441595 AATTCGGGGACCTCAGGCAATTCGGGCTTTGGCAACTCCGGAACTTT
1 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTT
52441642 AGGCAATTCA
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 82 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (51 bp):
AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGAACTTTCGGA
Found at i:52441676 original size:33 final size:33
Alignment explanation
Indices: 52441609--52441689 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
52441599 CGGGGACCTC
* *
52441609 AGGCAATTCGGGCTTTGGCAACTCCGGAACTTT
1 AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
* * *
52441642 AGGCAATTCAGGTTTTGGCAACTCGGGCATTTT
1 AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
* *
52441675 AGGTATTTCAGGTTT
1 AGGCAATTCAGGTTT
52441690 CGGGATTTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (33 bp):
AGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
Found at i:52446840 original size:33 final size:33
Alignment explanation
Indices: 52446750--52446850 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 33
52446740 ACTCCTATCT
* * * * *
52446750 GATTAACCTGGCTGGTCCGGGTTGGCTCGGGCT
1 GATTAACCTGGCTCGTCCGCGTAGGCTCCGGCC
*
52446783 GATTAACCTGGCTCGAT-TGCGTAGGCTCCGGCC
1 GATTAACCTGGCTCG-TCCGCGTAGGCTCCGGCC
* * *
52446816 GATTAACCTGGCTTGTCCGTGTAGGCTCTGGCC
1 GATTAACCTGGCTCGTCCGCGTAGGCTCCGGCC
52446849 GA
1 GA
52446851 CTAATGTGGC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
32 1 0.02
33 54 0.96
34 1 0.02
ACGTcount: A:0.13, C:0.27, G:0.34, T:0.27
Consensus pattern (33 bp):
GATTAACCTGGCTCGTCCGCGTAGGCTCCGGCC
Found at i:52447162 original size:48 final size:48
Alignment explanation
Indices: 52447110--52447382 Score: 275
Period size: 48 Copynumber: 5.6 Consensus size: 48
52447100 AACAGCGTTT
*
52447110 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGCTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
*
52447158 GCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGTGCCGGTGGTTGCATAAACA
1 ------GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
* * * * *
52447212 GCGTTTGCGTTTCCTTCGGAGGCGAAGGAGCCGGCGGCTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
* * * * *
52447260 ACGTCTGCGTTTCCTTAGGAGGCGGA---GCCGGCGGTTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
* * * **
52447305 GCGTTTGCGTCTCTTTCGGAGGCGCAGACGGTGGCT-GTTGCATAAACA
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGG-TGGTTGCATAAACA
* * *
52447353 GCGTCTGCGTCTCTTTCGGAGGCGGCGGCG
1 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCG
52447383 GTTGCATAAA
Statistics
Matches: 190, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
45 38 0.20
48 106 0.56
54 46 0.24
ACGTcount: A:0.15, C:0.23, G:0.36, T:0.25
Consensus pattern (48 bp):
GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGTTGCATAAACA
Found at i:52447176 original size:54 final size:54
Alignment explanation
Indices: 52447094--52447271 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 54
52447084 CGGCGGCGAT
*
52447094 TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGC
1 TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGC
* *
52447148 TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGTGCCGGTGGT
1 TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGC
* *
52447202 TGCATAAACAGCGTTTGCGTTT-C----C-TTCGGAGGCGAAGGAGCCGGCGGC
1 TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGC
* *
52447250 TGCATAAACAACGTCTGCGTTT
1 TGCATAAACAGCGTTTGCGTTT
52447272 CCTTAGGAGG
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
48 40 0.34
49 1 0.01
53 1 0.01
54 74 0.64
ACGTcount: A:0.16, C:0.22, G:0.34, T:0.28
Consensus pattern (54 bp):
TGCATAAACAGCGTTTGCGTTTGCGTTTCTTTCGGAGGCGGAGGAGCCGGTGGC
Found at i:52447313 original size:93 final size:93
Alignment explanation
Indices: 52447110--52447392 Score: 313
Period size: 93 Copynumber: 3.0 Consensus size: 93
52447100 AACAGCGTTT
* * *
52447110 GCGTTTGCGTTTCTTTCGGAGGCGGAGGCGCCGGTGGCTGCATAAACAGCGTTTGCGTTTGCGTT
1 GCGTTTGCGTTTCTTTCGGAGGCGAAGGAGCCGGCGGCTGCATAAACAGCG--T-C---TGCGTT
*
52447175 TCTTTCGGAGGCGGAGGTGCCGGTGGTTGCATAAACA
60 TCTTTCGGAGGCGGA---GCCGGCGGTTGCATAAACA
* * * *
52447212 GCGTTTGCGTTTCCTTCGGAGGCGAAGGAGCCGGCGGCTGCATAAACAACGTCTGCGTTTCCTTA
1 GCGTTTGCGTTTCTTTCGGAGGCGAAGGAGCCGGCGGCTGCATAAACAGCGTCTGCGTTTCTTTC
52447277 GGAGGCGGAGCCGGCGGTTGCATAAACA
66 GGAGGCGGAGCCGGCGGTTGCATAAACA
* * ** * * *
52447305 GCGTTTGCGTCTCTTTCGGAGGCGCA-GACGGTGGCTGTTGCATAAACAGCGTCTGCGTCTCTTT
1 GCGTTTGCGTTTCTTTCGGAGGCGAAGGA-GCCGGCGGCTGCATAAACAGCGTCTGCGTTTCTTT
52447369 CGGAGGC-G-G-CGGCGGTTGCATAAA
65 CGGAGGCGGAGCCGGCGGTTGCATAAA
52447393 AAACGCCTGT
Statistics
Matches: 161, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
90 15 0.09
91 1 0.01
92 3 0.02
93 75 0.47
96 19 0.12
99 1 0.01
100 1 0.01
102 46 0.29
ACGTcount: A:0.16, C:0.23, G:0.36, T:0.25
Consensus pattern (93 bp):
GCGTTTGCGTTTCTTTCGGAGGCGAAGGAGCCGGCGGCTGCATAAACAGCGTCTGCGTTTCTTTC
GGAGGCGGAGCCGGCGGTTGCATAAACA
Found at i:52455465 original size:21 final size:20
Alignment explanation
Indices: 52455428--52455474 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
52455418 TTTTATTTAA
** *
52455428 TTTATAAATAATTTAAATTT
1 TTTATAAATAAAATAAATAT
52455448 TTTATAATATAAAATAAATAT
1 TTTATAA-ATAAAATAAATAT
52455469 TTTATA
1 TTTATA
52455475 TTTAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTATAAATAAAATAAATAT
Found at i:52461675 original size:22 final size:22
Alignment explanation
Indices: 52461647--52461693 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
52461637 TTTTGTACTT
52461647 GCTTTCTTGTTTAATATTTATA
1 GCTTTCTTGTTTAATATTTATA
52461669 GCTTTCTTGTTTAATATTTATA
1 GCTTTCTTGTTTAATATTTATA
52461691 GCT
1 GCT
52461694 GTTCAATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (22 bp):
GCTTTCTTGTTTAATATTTATA
Found at i:52462003 original size:18 final size:19
Alignment explanation
Indices: 52461975--52462011 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
52461965 TAATGGCAAC
52461975 TTTCATTGCTTTTGGTGTT
1 TTTCATTGCTTTTGGTGTT
*
52461994 TTTC-TTGCTTTTTGTGTT
1 TTTCATTGCTTTTGGTGTT
52462012 GGGCACTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.03, C:0.11, G:0.19, T:0.68
Consensus pattern (19 bp):
TTTCATTGCTTTTGGTGTT
Found at i:52471177 original size:24 final size:24
Alignment explanation
Indices: 52471150--52471195 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
52471140 CTTTTAAGGG
52471150 TATTTTATTTACGAATTTTATTAT
1 TATTTTATTTACGAATTTTATTAT
* **
52471174 TATTTTTTTTTGGAATTTTATT
1 TATTTTATTTACGAATTTTATT
52471196 TGATGGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (24 bp):
TATTTTATTTACGAATTTTATTAT
Found at i:52476143 original size:5 final size:5
Alignment explanation
Indices: 52476133--52476158 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
52476123 GAACAAATAT
52476133 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
52476159 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:52476258 original size:5 final size:5
Alignment explanation
Indices: 52476248--52476273 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
52476238 CTCGAAAATT
52476248 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
52476274 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:52483696 original size:24 final size:24
Alignment explanation
Indices: 52483666--52483734 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
52483656 TATTTTATTT
52483666 AATTAATAAATATTTTATATTTAA
1 AATTAATAAATATTTTATATTTAA
**
52483690 AATTAATCTA-ATTTTATTATTTAA
1 AATTAATAAATATTTTA-TATTTAA
* **
52483714 TATTTGTAAATATTTCTATAT
1 AATTAATAAATATTT-TATAT
52483735 ACATATATCA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 6 0.17
24 20 0.57
25 7 0.20
26 2 0.06
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (24 bp):
AATTAATAAATATTTTATATTTAA
Found at i:52485380 original size:16 final size:16
Alignment explanation
Indices: 52485360--52485428 Score: 111
Period size: 16 Copynumber: 4.3 Consensus size: 16
52485350 TTGGTTCGCT
*
52485360 GTAATGGAATAGAGGT
1 GTAATGGAATAGAGGC
*
52485376 GTAATGGAATCGAGGC
1 GTAATGGAATAGAGGC
*
52485392 GTAATGGAATAGATGC
1 GTAATGGAATAGAGGC
52485408 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
52485424 GTAAT
1 GTAAT
52485429 AGGTAATTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:52485689 original size:15 final size:17
Alignment explanation
Indices: 52485671--52485705 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
52485661 AAATATAATT
52485671 TAATAAA-ATTCTTA-A
1 TAATAAATATTCTTATA
52485686 TAATAAATATTCTTATA
1 TAATAAATATTCTTATA
52485703 TAA
1 TAA
52485706 ATTTACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.39
16 7 0.39
17 4 0.22
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAAATATTCTTATA
Found at i:52485896 original size:54 final size:54
Alignment explanation
Indices: 52485784--52485896 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
52485774 ATAAAAATAT
* * * *
52485784 ATAATTTAATAAAATTCTTTAGTAATAAATATTCTTATACGAATTTGTATAATT
1 ATAATTTAATAAAATTCTTTACTAATAAATATTCTTATACGAATTTCTAAAATC
* * *
52485838 ATAATTTCATAAAATTC-TTACTAATAAATTTTCTTATATGAATTTACTAAAATC
1 ATAATTTAATAAAATTCTTTACTAATAAATATTCTTATACGAATTT-CTAAAATC
52485892 ATAAT
1 ATAAT
52485897 ATAACTTGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
53 25 0.49
54 26 0.51
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTTACTAATAAATATTCTTATACGAATTTCTAAAATC
Found at i:52486455 original size:42 final size:42
Alignment explanation
Indices: 52486409--52486492 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
52486399 TCGGGTCCGT
52486409 AGCAGAGGACCTAATCCTTCGTCTATAAGTATGTAGGCTAAG
1 AGCAGAGGACCTAATCCTTCGTCTATAAGTATGTAGGCTAAG
52486451 AGCAGAGGACCTAATCCTTCGTCTATAAGTATGTAGGCTAAG
1 AGCAGAGGACCTAATCCTTCGTCTATAAGTATGTAGGCTAAG
52486493 GCTGGCACCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (42 bp):
AGCAGAGGACCTAATCCTTCGTCTATAAGTATGTAGGCTAAG
Found at i:52487527 original size:24 final size:27
Alignment explanation
Indices: 52487476--52487528 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
52487466 TATATGTAAT
*
52487476 ATTATTAAAATAATATTTTTTATTTTA
1 ATTATTAAAATAATATTTTTTATATTA
*
52487503 ATTATTTAAA-AATA-TTTTTA-ATTA
1 ATTATTAAAATAATATTTTTTATATTA
52487527 AT
1 AT
52487529 GTGGTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 4 0.17
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTATTAAAATAATATTTTTTATATTA
Found at i:52499577 original size:18 final size:18
Alignment explanation
Indices: 52499544--52499616 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
52499534 TTTTGTTGAT
* *
52499544 ATATATAAA-AATTTAAC
1 ATATATAAATTATTTAAA
52499561 ATATATAAATTATTTAAA
1 ATATATAAATTATTTAAA
* * *
52499579 AAATAAAAATTTATTAAAA
1 ATATATAAA-TTATTTAAA
* *
52499598 ATATTTTAATTATTTAAA
1 ATATATAAATTATTTAAA
52499616 A
1 A
52499617 AATAAAAAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
17 9 0.20
18 22 0.50
19 13 0.30
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATATAAATTATTTAAA
Found at i:52500326 original size:5 final size:6
Alignment explanation
Indices: 52500312--52500336 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
52500302 CAAGAGTTGG
52500312 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
52500337 TTTGAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:52501614 original size:21 final size:19
Alignment explanation
Indices: 52501580--52501622 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
52501570 GCGGTATTTC
52501580 TTTTTTTAAAACGA-AAGTT
1 TTTTTTTAAAACGAGAA-TT
52501599 TTTTTTTAAAATACGAGAATT
1 TTTTTTT-AAA-ACGAGAATT
52501620 TTT
1 TTT
52501623 GAAAACACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.33
20 3 0.14
21 9 0.43
22 2 0.10
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (19 bp):
TTTTTTTAAAACGAGAATT
Found at i:52501621 original size:16 final size:17
Alignment explanation
Indices: 52501601--52502012 Score: 114
Period size: 17 Copynumber: 23.3 Consensus size: 17
52501591 CGAAAGTTTT
*
52501601 TTTTTAAAATACGAGAA
1 TTTTTAAAACACGAGAA
52501618 TTTTTGAAAACACGAGAA
1 TTTTT-AAAACACGAGAA
*
52501636 TTTGT-AAACAC--GAA
1 TTTTTAAAACACGAGAA
*
52501650 TATTTTAGAAACACGAAAA
1 T-TTTTA-AAACACGAGAA
*
52501669 TTTTTGGAAAAAAACGA-AA
1 TTTTT---AAAACACGAGAA
* *
52501688 TTTTCTTAAAACACGACATTTT
1 -TTT-TTAAAACACGAGA---A
* *
52501710 TTTTTGAAACACGGGAA
1 TTTTTAAAACACGAGAA
* * *
52501727 TTTTTAAAACAAGACATT
1 TTTTTAAAACACGAGA-A
* * ***
52501745 TTTTTGAAACA-AATTTT
1 TTTTTAAAACACGA-GAA
52501762 TTTCTTAAAA-A--A-AA
1 TTT-TTAAAACACGAGAA
** *
52501776 AATTT-AAATACGAGAA
1 TTTTTAAAACACGAGAA
*
52501792 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAGAA
*
52501809 TTTTTAAAACACGGAAATA
1 TTTTTAAAACAC-GAGA-A
52501828 TTTTTTTTTAAAACACGA-AA
1 ----TTTTTAAAACACGAGAA
* *
52501848 TTTTTTTTTGAAAACAAGAAAA
1 ----TTTTT-AAAACACGAGAA
* *
52501870 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAGAA
*
52501887 TTTTGAAAACACGA-AGA
1 TTTTTAAAACACGAGA-A
* *
52501904 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAGAA
*
52501921 TTTTTAAAAGCACGAGGA
1 TTTTTAAAA-CACGAGAA
* *
52501939 TTATTGAAAGCACGA-AGA
1 TT-TTTAAAACACGAGA-A
* *
52501957 TTTATAAAA-ACGACAA
1 TTTTTAAAACACGAGAA
* *
52501973 TTTTTGAAATACGAGAAA
1 TTTTTAAAACACGAG-AA
* * *
52501991 TTTTTTAAACGCGAAAA
1 TTTTTAAAACACGAGAA
52502008 TTTTT
1 TTTTT
52502013 TTCAAACACG
Statistics
Matches: 300, Mismatches: 56, Indels: 78
0.69 0.13 0.18
Matches are distributed among these distances:
12 3 0.01
13 3 0.01
14 5 0.02
15 4 0.01
16 25 0.08
17 106 0.35
18 81 0.27
19 12 0.04
20 30 0.10
21 15 0.05
22 4 0.01
23 12 0.04
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (17 bp):
TTTTTAAAACACGAGAA
Found at i:52501621 original size:18 final size:18
Alignment explanation
Indices: 52501600--52501703 Score: 74
Period size: 18 Copynumber: 5.8 Consensus size: 18
52501590 ACGAAAGTTT
* *
52501600 TTTTTTAAAATACGAGAA
1 TTTTTGAAAACACGAGAA
52501618 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAGAA
*
52501636 --TTTGTAAACACGA-ATA
1 TTTTTGAAAACACGAGA-A
* *
52501652 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAGAA
*
52501669 TTTTTGGAAAAAAACGA-AA
1 TTTTT-G-AAAACACGAGAA
*
52501688 TTTTCTTAAAACACGA
1 TTTT-TGAAAACACGA
52501704 CATTTTTTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
15 1 0.01
16 13 0.19
17 13 0.19
18 29 0.41
19 6 0.09
20 8 0.11
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (18 bp):
TTTTTGAAAACACGAGAA
Found at i:52501825 original size:18 final size:17
Alignment explanation
Indices: 52501785--52502046 Score: 148
Period size: 17 Copynumber: 14.5 Consensus size: 17
52501775 AAATTTAAAT
*
52501785 ACGAGAATTTTTAAAAC
1 ACGAAAATTTTTAAAAC
52501802 ACGAAAATTTTTAAAAC
1 ACGAAAATTTTTAAAAC
52501819 ACGGAAATATTTTTTTTTAAAAC
1 AC-GAAA-A----TTTTTAAAAC
*
52501842 ACGAAATTTTTTTTTGAAAAC
1 ACGAAA---ATTTTT-AAAAC
* *
52501863 AAGAAAATTTTTGAAAC
1 ACGAAAATTTTTAAAAC
* * *
52501880 ACTAGAATTTTGAAAAC
1 ACGAAAATTTTTAAAAC
* *
52501897 ACGAAGATTTTTGAAAC
1 ACGAAAATTTTTAAAAC
* *
52501914 ATGAGAATTTTTAAAAGC
1 ACGAAAATTTTTAAAA-C
** * *
52501932 ACGAGGATTATTGAAAGC
1 ACGAAAATT-TTTAAAAC
* *
52501950 ACGAAGATTTATAAAA-
1 ACGAAAATTTTTAAAAC
* * *
52501966 ACGACAATTTTTGAAAT
1 ACGAAAATTTTTAAAAC
*
52501983 ACGAGAAATTTTTTAAAC
1 ACGA-AAATTTTTAAAAC
* *
52502001 GCGAAAATTTTTTTCAAAC
1 ACGAAAA--TTTTTAAAAC
*
52502020 ACGAAAACTTTTGAAAAC
1 ACGAAAA-TTTTTAAAAC
*
52502038 GCGAAAATT
1 ACGAAAATT
52502047 CGAAAATTTC
Statistics
Matches: 189, Mismatches: 41, Indels: 30
0.73 0.16 0.12
Matches are distributed among these distances:
16 12 0.06
17 71 0.38
18 53 0.28
19 21 0.11
20 5 0.03
21 10 0.05
22 4 0.02
23 12 0.06
24 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (17 bp):
ACGAAAATTTTTAAAAC
Found at i:52501847 original size:22 final size:22
Alignment explanation
Indices: 52501809--52501874 Score: 91
Period size: 21 Copynumber: 3.0 Consensus size: 22
52501799 AACACGAAAA
52501809 TTTTTAAAACACGGAAATATTTT
1 TTTTTAAAACAC-GAAATATTTT
52501832 TTTTTAAAACACGAAAT-TTTT
1 TTTTTAAAACACGAAATATTTT
* *
52501853 TTTTGAAAACAAGAAA-ATTTT
1 TTTTTAAAACACGAAATATTTT
52501874 T
1 T
52501875 GAAACACTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 23 0.57
22 5 0.12
23 12 0.30
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (22 bp):
TTTTTAAAACACGAAATATTTT
Found at i:52502013 original size:19 final size:19
Alignment explanation
Indices: 52501991--52502046 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
52501981 ATACGAGAAA
52501991 TTTTTT-AAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
* *
52502009 TTTTTTCAAACACGAAAA-
1 TTTTTTAAAACGCGAAAAT
* *
52502027 CTTTTGAAAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
52502046 T
1 T
52502047 CGAAAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTTTTAAAACGCGAAAAT
Found at i:52502090 original size:18 final size:17
Alignment explanation
Indices: 52502041--52502091 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
52502031 TGAAAACGCG
52502041 AAAATTCGAAAATTTCT
1 AAAATTCGAAAATTTCT
* * *
52502058 AAAATACGAGTAATTTTT
1 AAAATTCGA-AAATTTCT
52502076 AAAGATTCGAAAATTT
1 AAA-ATTCGAAAATTT
52502092 GAAACAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 14 0.52
19 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (17 bp):
AAAATTCGAAAATTTCT
Found at i:52502602 original size:8 final size:8
Alignment explanation
Indices: 52502584--52502648 Score: 82
Period size: 8 Copynumber: 8.4 Consensus size: 8
52502574 ATTGAACCCC
52502584 CTTTTTCTT
1 CTTTTT-TT
52502593 CTTTTTTT
1 CTTTTTTT
52502601 C-TTTTTT
1 CTTTTTTT
52502608 C-TTTTTT
1 CTTTTTTT
*
52502615 CCTTTTTT
1 CTTTTTTT
52502623 CTTTTTTT
1 CTTTTTTT
52502631 C-TTTTTT
1 CTTTTTTT
*
52502638 CTTCTTTT
1 CTTTTTTT
52502646 CTT
1 CTT
52502649 CCTTTTTTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
7 21 0.40
8 25 0.48
9 6 0.12
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (8 bp):
CTTTTTTT
Found at i:52502611 original size:15 final size:15
Alignment explanation
Indices: 52502586--52502661 Score: 100
Period size: 15 Copynumber: 5.1 Consensus size: 15
52502576 TGAACCCCCT
52502586 TTTTCTTCTTTTTTTC
1 TTTT-TTCTTTTTTTC
*
52502602 TTTTTTCTTTTTTCC
1 TTTTTTCTTTTTTTC
52502617 TTTTTTCTTTTTTTC
1 TTTTTTCTTTTTTTC
*
52502632 TTTTTTCTTCTTTTC
1 TTTTTTCTTTTTTTC
**
52502647 TTCCTT-TTTTTTTC
1 TTTTTTCTTTTTTTC
52502661 T
1 T
52502662 GCTGGGCTGC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
14 8 0.15
15 42 0.78
16 4 0.07
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTCTTTTTTTC
Found at i:52502649 original size:8 final size:7
Alignment explanation
Indices: 52502595--52502661 Score: 82
Period size: 7 Copynumber: 9.1 Consensus size: 7
52502585 TTTTTCTTCT
52502595 TTTTTTC
1 TTTTTTC
52502602 TTTTTTC
1 TTTTTTC
52502609 TTTTTTCC
1 TTTTTT-C
52502617 TTTTTTC
1 TTTTTTC
52502624 TTTTTTTC
1 -TTTTTTC
52502632 TTTTTTC
1 TTTTTTC
52502639 TTCTTTTC
1 TT-TTTTC
*
52502647 TTCCTTT-
1 TT-TTTTC
52502654 TTTTTTC
1 TTTTTTC
52502661 T
1 T
52502662 GCTGGGCTGC
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
6 3 0.06
7 26 0.48
8 25 0.46
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:52502954 original size:3 final size:3
Alignment explanation
Indices: 52502948--52502993 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
52502938 TTTTCTTTCT
*
52502948 TTC TTC TTC CTC TT- TTC TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
52502994 AAAGTCTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:52502977 original size:10 final size:10
Alignment explanation
Indices: 52502962--52502990 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
52502952 TCTTCCTCTT
52502962 TTCTTCTTCC
1 TTCTTCTTCC
52502972 TTCTTCTTCC
1 TTCTTCTTCC
52502982 TTCTTCTTC
1 TTCTTCTTC
52502991 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:52502978 original size:13 final size:13
Alignment explanation
Indices: 52502948--52502993 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
52502938 TTTTCTTTCT
52502948 TTCTTCTTCC-TC
1 TTCTTCTTCCTTC
52502960 TT-TTCTT-CTTCC
1 TTCTTCTTCCTT-C
52502972 TTCTTCTTCCTTC
1 TTCTTCTTCCTTC
52502985 TTCTTCTTC
1 TTCTTCTTC
52502994 AAAGTCTAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.20
12 5 0.17
13 15 0.50
14 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCTTCTTCCTTC
Found at i:52503084 original size:10 final size:10
Alignment explanation
Indices: 52503049--52503098 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
52503039 ACGCCGGTAC
52503049 TCTT-TCTTT
1 TCTTCTCTTT
* *
52503058 TCTTCTCCTC
1 TCTTCTCTTT
52503068 T-TTCTCTTT
1 TCTTCTCTTT
52503077 TCTTCTCTTT
1 TCTTCTCTTT
*
52503087 TCTTCTTTTT
1 TCTTCTCTTT
52503097 TC
1 TC
52503099 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:52503096 original size:19 final size:19
Alignment explanation
Indices: 52503053--52503095 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
52503043 CGGTACTCTT
52503053 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
52503072 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
52503089 TTCTTTT
1 -TCTTTT
52503096 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:52503375 original size:29 final size:29
Alignment explanation
Indices: 52503342--52503458 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
52503332 TGTAATTTTT
*
52503342 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
52503371 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
52503401 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
52503430 GGAAAAGTTTAGGTGTCAAAATGCAATTT
1 AGAAAA-TTTAGG-GTTAAAATGAAATTT
52503459 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 16 0.22
30 54 0.75
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:52503397 original size:30 final size:30
Alignment explanation
Indices: 52503357--52503458 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
52503347 ATTTAGGATT
*
52503357 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
52503387 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* *
52503417 AAAATGAAATTT-AGGAAAAGTTTAGGTGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
52503447 AAAATGCAATTT
1 AAAATGAAATTT
52503459 TTATTTTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:52503481 original size:16 final size:17
Alignment explanation
Indices: 52503456--52503491 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
52503446 CAAAATGCAA
52503456 TTTTTATTTTTT-AAAT
1 TTTTTATTTTTTGAAAT
*
52503472 TTTTTTTTTTTTGAAAT
1 TTTTTATTTTTTGAAAT
52503489 TTT
1 TTT
52503492 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTTGAAAT
Found at i:52503482 original size:17 final size:17
Alignment explanation
Indices: 52503456--52503491 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
52503446 CAAAATGCAA
*
52503456 TTTTTATTTTTTAAATT
1 TTTTTATTTTTGAAATT
*
52503473 TTTTTTTTTTTGAAATT
1 TTTTTATTTTTGAAATT
52503490 TT
1 TT
52503492 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTGAAATT
Found at i:52503864 original size:53 final size:54
Alignment explanation
Indices: 52503733--52503878 Score: 233
Period size: 55 Copynumber: 2.7 Consensus size: 54
52503723 CACGTGAGCC
* *
52503733 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT-CAA
52503788 AAGGCTCAACTCACCTCTCGCAATATGA-TTGATTTTTGAAAAACAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTCAA
*
52503841 AAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
52503879 TTTTTTGAAA
Statistics
Matches: 86, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
53 29 0.34
54 19 0.22
55 38 0.44
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTCAA
Found at i:52503929 original size:13 final size:13
Alignment explanation
Indices: 52503890--52503921 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
52503880 TTTTTGAAAC
52503890 ACAGAAATTAAAA
1 ACAGAAATTAAAA
52503903 ACAGAAATTAAAA
1 ACAGAAATTAAAA
52503916 ACAGAA
1 ACAGAA
52503922 TTTGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.12
Consensus pattern (13 bp):
ACAGAAATTAAAA
Found at i:52504047 original size:72 final size:72
Alignment explanation
Indices: 52503913--52505372 Score: 2306
Period size: 72 Copynumber: 20.2 Consensus size: 72
52503903 ACAGAAATTA
* ** * * * ** *
52503913 AAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
52503978 TG-A-TTTG
64 TGAATTTTG
* *
52503985 AAAA-AGTAGAATTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 AAAACAG-A-AA-TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
52504049 TTGAATTTTG
63 TTGAATTTTG
52504059 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504124 AATTTTG
66 AATTTTG
*
52504131 -AGA-AGAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504193 AATTTTG
66 AATTTTG
*
52504200 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504265 AATTTTG
66 AATTTTG
52504272 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504337 AATTTTG
66 AATTTTG
* *
52504344 AGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504409 GAATTTTG
65 GAATTTTG
52504417 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504482 AATTTTG
66 AATTTTG
52504489 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504554 AATTTTG
66 AATTTTG
* *
52504561 AGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504626 GAA-TTTG
65 GAATTTTG
52504633 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504698 AATTTTG
66 AATTTTG
52504705 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504770 AATTTTG
66 AATTTTG
52504777 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504842 AATTTTG
66 AATTTTG
* * * *
52504849 AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTT
1 AAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504914 GAATTTTG
65 GAATTTTG
* *
52504922 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* *
52504987 ATTTTTTT
66 A-ATTTTG
* * * ** *
52504995 AACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AA-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52505060 GAATTTTG
65 GAATTTTG
52505068 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52505133 AATTTTG
66 AATTTTG
* * * *
52505140 AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTT
1 AAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52505205 GAATTTTG
65 GAATTTTG
* *
52505213 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* *
52505278 ATTTTTTTTT
66 A---ATTTTG
* * * ** *
52505288 AACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AA-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52505353 G-ATTTTG
65 GAATTTTG
*
52505360 AAAAACATAAATT
1 -AAAACAGAAATT
52505373 AAAAGGCTTA
Statistics
Matches: 1309, Mismatches: 58, Indels: 42
0.93 0.04 0.03
Matches are distributed among these distances:
69 55 0.04
70 13 0.01
71 79 0.06
72 721 0.55
73 288 0.22
74 86 0.07
75 8 0.01
76 59 0.05
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (72 bp):
AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTG
Found at i:52504406 original size:145 final size:144
Alignment explanation
Indices: 52503913--52505372 Score: 2306
Period size: 145 Copynumber: 10.1 Consensus size: 144
52503903 ACAGAAATTA
* ** * * * ** *
52503913 AAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
52503978 TG-A-TTTGAAAA-AGTAGAATTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCG
64 TGAATTTTGAAAACAG-A-AA-TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
52504040 CAATATGAGTTGAATTTTG
126 CAATATGAGTTGAATTTTG
52504059 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
52504124 AATTTTG-AGA-AGAAATTGAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
52504186 TGAGTTGAATTTTG
131 TGAGTTGAATTTTG
*
52504200 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504265 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
52504330 TGAGTTGAATTTTG
131 TGAGTTGAATTTTG
* *
52504344 AGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504409 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
65 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
52504474 ATGAGTTGAATTTTG
130 ATGAGTTGAATTTTG
52504489 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* *
52504554 AATTTTGAGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
52504619 ATGAGTTGAA-TTTG
130 ATGAGTTGAATTTTG
52504633 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
52504698 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
52504763 TGAGTTGAATTTTG
131 TGAGTTGAATTTTG
52504777 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * *
52504842 AATTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
*
52504907 ATAAGTTGAATTTTG
130 ATGAGTTGAATTTTG
* *
52504922 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * * * * ** *
52504987 ATTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAA
66 A-ATTTTGAA-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
52505052 TATGAGTTGAATTTTG
129 TATGAGTTGAATTTTG
52505068 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * *
52505133 AATTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
*
52505198 ATAAGTTGAATTTTG
130 ATGAGTTGAATTTTG
* *
52505213 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * * * * ** *
52505278 ATTTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGC
66 A---ATTTTGAA-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
52505343 AATATGAGTTG-ATTTTG
127 AATATGAGTTGAATTTTG
*
52505360 AAAAACATAAATT
1 -AAAACAGAAATT
52505373 AAAAGGCTTA
Statistics
Matches: 1240, Mismatches: 57, Indels: 32
0.93 0.04 0.02
Matches are distributed among these distances:
141 125 0.10
142 8 0.01
143 77 0.06
144 316 0.25
145 470 0.38
146 162 0.13
147 8 0.01
148 72 0.06
149 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (144 bp):
AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
TGAGTTGAATTTTG
Found at i:52504463 original size:217 final size:216
Alignment explanation
Indices: 52503913--52505372 Score: 2308
Period size: 217 Copynumber: 6.7 Consensus size: 216
52503903 ACAGAAATTA
* * * * * ** *
52503913 AAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGT
* *
52503978 TG-A-TTTGAAAA-AGTAGAATTTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCG
64 TGAATTTTGAAAACAG-A-AA-TTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
52504040 CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
126 CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
52504105 TTTCTCGCAATATGAGTTGAATTTTG
191 TTTCTCGCAATATGAGTTGAATTTTG
*
52504131 -AGA-AGAAATTG-AAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
*
52504193 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATA
66 AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
52504258 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
131 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
52504323 CGCAATATGAGTTGAATTTTG
196 CGCAATATGAGTTGAATTTTG
*
52504344 AGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504409 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
65 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
52504474 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
130 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
52504539 TCGCAATATGAGTTGAATTTTG
195 TCGCAATATGAGTTGAATTTTG
*
52504561 AGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
52504626 GAA-TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
65 GAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
52504690 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
130 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
52504755 TCGCAATATGAGTTGAATTTTG
195 TCGCAATATGAGTTGAATTTTG
*
52504777 AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * *
52504842 AATTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
66 AATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAAT
* * *
52504907 ATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTC
130 ATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
* *
52504972 TCGCAATATGAGTTGATTTTTTT
195 TCGCAATATGAGTTGA-ATTTTG
* * ** *
52504995 AACAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
1 AA-AACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
52505059 TGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
64 TGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
* * *
52505124 TATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATT
129 TATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATT
*
52505189 TCTCGCAATATAAGTTGAATTTTG
193 TCTCGCAATATGAGTTGAATTTTG
* * *
52505213 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
* * * * * ** *
52505278 ATTTTTTTTTAACAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGC
66 A---ATTTTGAA-AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
*
52505343 AATATGAGTTG-ATTTTGAAAAACATAAATT
127 AATATGAGTTGAATTTTG-AAAACAGAAATT
52505373 AAAAGGCTTA
Statistics
Matches: 1171, Mismatches: 52, Indels: 36
0.93 0.04 0.03
Matches are distributed among these distances:
213 161 0.14
214 3 0.00
215 88 0.08
216 174 0.15
217 455 0.39
218 86 0.07
219 124 0.11
220 19 0.02
221 61 0.05
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (216 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCT
CGCAATATGAGTTGAATTTTG
Found at i:52526689 original size:16 final size:17
Alignment explanation
Indices: 52526669--52527081 Score: 130
Period size: 17 Copynumber: 23.3 Consensus size: 17
52526659 ACGAAAGTTT
*
52526669 TTTTTAAAATACGAGAA
1 TTTTTAAAACACGAGAA
52526686 TTTTTGAAAACACGAGAA
1 TTTTT-AAAACACGAGAA
*
52526704 TTTGT-AAACAC--GAA
1 TTTTTAAAACACGAGAA
*
52526718 TATTTTAGAAACACGAAAA
1 T-TTTTA-AAACACGAGAA
*
52526737 TTTTTGGAAAAAAACGA-AA
1 TTTTT---AAAACACGAGAA
* *
52526756 TTTTCTTAAAACACGACATTTT
1 -TTT-TTAAAACACGAGA---A
* *
52526778 TTTTTGAAACACGGGAA
1 TTTTTAAAACACGAGAA
* * *
52526795 TTTTTAAAACAAGACATT
1 TTTTTAAAACACGAGA-A
* * ***
52526813 TTTTTGAAACA-AATTTT
1 TTTTTAAAACACGA-GAA
*
52526830 TTTCTTAAAA-A--AAAA
1 TTT-TTAAAACACGAGAA
* *
52526845 ATTTT-AAATACGAGAA
1 TTTTTAAAACACGAGAA
*
52526861 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAGAA
*
52526878 TTTTTAAAACACGGAAATA
1 TTTTTAAAACAC-GAGA-A
52526897 TTTTTTTTAAAACACGA-AA
1 ---TTTTTAAAACACGAGAA
* *
52526916 TTTTTTTTTGAAAACAAGAAAA
1 ----TTTTT-AAAACACGAGAA
* *
52526938 TTTTTGAAACACTAGAA
1 TTTTTAAAACACGAGAA
*
52526955 TTTTGAAAACACGA-AGA
1 TTTTTAAAACACGAGA-A
* *
52526972 TTTTTGAAACATGAGAA
1 TTTTTAAAACACGAGAA
*
52526989 TTTTTAAAAGCACGAGGA
1 TTTTTAAAA-CACGAGAA
* *
52527007 TTATTGAAAGCACGA-AGA
1 TT-TTTAAAACACGAGA-A
* * *
52527025 TTTATAAAAAACGACAA
1 TTTTTAAAACACGAGAA
* *
52527042 TTTTTGAAATACGAGAAA
1 TTTTTAAAACACGAG-AA
* * *
52527060 TTTTTTAAACGCGAAAA
1 TTTTTAAAACACGAGAA
52527077 TTTTT
1 TTTTT
52527082 TTCAAACACG
Statistics
Matches: 301, Mismatches: 58, Indels: 74
0.70 0.13 0.17
Matches are distributed among these distances:
13 3 0.01
14 7 0.02
15 5 0.02
16 15 0.05
17 117 0.39
18 82 0.27
19 13 0.04
20 29 0.10
21 16 0.05
22 14 0.05
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.34
Consensus pattern (17 bp):
TTTTTAAAACACGAGAA
Found at i:52526689 original size:18 final size:18
Alignment explanation
Indices: 52526668--52527106 Score: 120
Period size: 18 Copynumber: 24.6 Consensus size: 18
52526658 AACGAAAGTT
* *
52526668 TTTTTTAAAATACGAGAA
1 TTTTTGAAAACACGAGAA
52526686 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAGAA
*
52526704 --TTTGTAAACACGA-ATA
1 TTTTTGAAAACACGAGA-A
* *
52526720 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAGAA
*
52526737 TTTTTGGAAAAAAACGA-AA
1 TTTTT-G-AAAACACGAGAA
* * *
52526756 TTTTCTTAAAACACGACATTTT
1 TTTT-TGAAAACACGAGA---A
*
52526778 TTTTTG-AAACACGGGAA
1 TTTTTGAAAACACGAGAA
* * *
52526795 TTTTT-AAAACAAGACATT
1 TTTTTGAAAACACGAGA-A
* ***
52526813 TTTTTG-AAACA-AATTT
1 TTTTTGAAAACACGAGAA
* *
52526829 TTTTCTTAAAA-A--AAAA
1 TTTT-TGAAAACACGAGAA
* *
52526845 ATTTT--AAATACGAGAA
1 TTTTTGAAAACACGAGAA
*
52526861 TTTTT-AAAACACGAAAA
1 TTTTTGAAAACACGAGAA
*
52526878 TTTTT-AAAACACGGAAATA
1 TTTTTGAAAACAC-GAGA-A
*
52526897 TTTTTTTTAAAACACGA-AA
1 --TTTTTGAAAACACGAGAA
* *
52526916 TTTTTTTTTGAAAACAAGAAAA
1 ----TTTTTGAAAACACGAGAA
*
52526938 TTTTTG-AAACACTAGAA
1 TTTTTGAAAACACGAGAA
52526955 -TTTTGAAAACACGA-AGA
1 TTTTTGAAAACACGAGA-A
*
52526972 TTTTTG-AAACATGAGAA
1 TTTTTGAAAACACGAGAA
*
52526989 TTTTT-AAAAGCACGAGGA
1 TTTTTGAAAA-CACGAGAA
* *
52527007 TTATTGAAAGCACGA-AGA
1 TTTTTGAAAACACGAGA-A
* * *
52527025 TTTAT-AAAAAACGACAA
1 TTTTTGAAAACACGAGAA
*
52527042 TTTTTG-AAATACGAGAAA
1 TTTTTGAAAACACGAG-AA
* * *
52527060 TTTTT-TAAACGCGAAAA
1 TTTTTGAAAACACGAGAA
** *
52527077 TTTTTTTCAAACACGAAAA
1 -TTTTTGAAAACACGAGAA
*
52527096 CTTTTGAAAAC
1 TTTTTGAAAAC
52527107 GCGAAAATTC
Statistics
Matches: 322, Mismatches: 56, Indels: 86
0.69 0.12 0.19
Matches are distributed among these distances:
13 3 0.01
14 1 0.00
15 2 0.01
16 35 0.11
17 102 0.32
18 104 0.32
19 22 0.07
20 17 0.05
21 23 0.07
22 13 0.04
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (18 bp):
TTTTTGAAAACACGAGAA
Found at i:52526879 original size:17 final size:17
Alignment explanation
Indices: 52526841--52527115 Score: 156
Period size: 17 Copynumber: 15.4 Consensus size: 17
52526831 TTCTTAAAAA
* *
52526841 AAAAATTTT-AAATACG
1 AAAATTTTTAAAACACG
*
52526857 AGAATTTTTAAAACACG
1 AAAATTTTTAAAACACG
52526874 AAAATTTTTAAAACACGG
1 AAAATTTTTAAAACAC-G
52526892 AAATATTTTTTTTAAAACACG
1 AAA-A---TTTTTAAAACACG
* *
52526913 AAATTTTTTTTTGAAAACAAG
1 AAA---ATTTTT-AAAACACG
* *
52526934 AAAATTTTTGAAACACT
1 AAAATTTTTAAAACACG
* *
52526951 AGAATTTTGAAAACACG
1 AAAATTTTTAAAACACG
* * *
52526968 AAGATTTTTGAAACATG
1 AAAATTTTTAAAACACG
*
52526985 AGAATTTTTAAAAGCACG
1 AAAATTTTTAAAA-CACG
** * *
52527003 AGGATTATTGAAAGCACG
1 AAAATT-TTTAAAACACG
* * *
52527021 AAGATTTATAAAAAACG
1 AAAATTTTTAAAACACG
* * *
52527038 ACAATTTTTGAAATACG
1 AAAATTTTTAAAACACG
* *
52527055 AGAAATTTTTTAAACGCG
1 A-AAATTTTTAAAACACG
*
52527073 AAAATTTTTTTCAAACACG
1 AAAA--TTTTTAAAACACG
* *
52527092 AAAACTTTTGAAAACGCG
1 AAAA-TTTTTAAAACACG
52527110 AAAATT
1 AAAATT
52527116 CGAAAATTTC
Statistics
Matches: 199, Mismatches: 46, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
16 7 0.04
17 86 0.43
18 53 0.27
19 21 0.11
20 5 0.03
21 14 0.07
22 12 0.06
23 1 0.01
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (17 bp):
AAAATTTTTAAAACACG
Found at i:52526905 original size:22 final size:20
Alignment explanation
Indices: 52526861--52526942 Score: 89
Period size: 22 Copynumber: 4.0 Consensus size: 20
52526851 AATACGAGAA
*
52526861 TTTTTAAAACACGAAA---A
1 TTTTTAAAACACGAAATTTT
52526878 TTTTTAAAACACGGAAATATTT
1 TTTTTAAAACAC-GAAAT-TTT
52526900 TTTTTAAAACACGAAATTTT
1 TTTTTAAAACACGAAATTTT
*
52526920 TTTTTGAAAACAAGAAAATTTT
1 TTTTT-AAAACACG-AAATTTT
52526942 T
1 T
52526943 GAAACACTAG
Statistics
Matches: 56, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
17 12 0.21
18 4 0.07
20 8 0.14
21 12 0.21
22 20 0.36
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (20 bp):
TTTTTAAAACACGAAATTTT
Found at i:52526915 original size:21 final size:20
Alignment explanation
Indices: 52526861--52526942 Score: 98
Period size: 21 Copynumber: 4.1 Consensus size: 20
52526851 AATACGAGAA
52526861 TTTTTAAAACACGAAAA---
1 TTTTTAAAACACGAAAATTT
52526878 TTTTTAAAACACGGAAATATTT
1 TTTTTAAAACAC-GAAA-ATTT
*
52526900 TTTTTAAAACACGAAATTTT
1 TTTTTAAAACACGAAAATTT
*
52526920 TTTTTGAAAACAAGAAAATTT
1 TTTTT-AAAACACGAAAATTT
52526941 TT
1 TT
52526943 GAAACACTAG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
17 12 0.21
18 4 0.07
19 1 0.02
20 8 0.14
21 19 0.34
22 12 0.21
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (20 bp):
TTTTTAAAACACGAAAATTT
Found at i:52527082 original size:19 final size:19
Alignment explanation
Indices: 52527060--52527115 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
52527050 ATACGAGAAA
52527060 TTTTTT-AAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
* *
52527078 TTTTTTCAAACACGAAAA-
1 TTTTTTAAAACGCGAAAAT
* *
52527096 CTTTTGAAAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
52527115 T
1 T
52527116 CGAAAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTTTTAAAACGCGAAAAT
Found at i:52527159 original size:18 final size:17
Alignment explanation
Indices: 52527110--52527160 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
52527100 TGAAAACGCG
52527110 AAAATTCGAAAATTTCT
1 AAAATTCGAAAATTTCT
* * *
52527127 AAAATACGAGTAATTTTT
1 AAAATTCGA-AAATTTCT
52527145 AAAGATTCGAAAATTT
1 AAA-ATTCGAAAATTT
52527161 GAAACAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 14 0.52
19 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (17 bp):
AAAATTCGAAAATTTCT
Found at i:52527675 original size:7 final size:7
Alignment explanation
Indices: 52527663--52527710 Score: 71
Period size: 7 Copynumber: 6.9 Consensus size: 7
52527653 TTTTTCTTCT
52527663 TTTTTTC
1 TTTTTTC
52527670 TTTTTTC
1 TTTTTTC
52527677 -TTTTTC
1 TTTTTTC
*
52527683 CTTTTTC
1 TTTTTTC
52527690 TTTTTTC
1 TTTTTTC
52527697 TTTTTTC
1 TTTTTTC
52527704 TTCTTTT
1 TT-TTTT
52527711 TCTTCCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
6 6 0.16
7 28 0.74
8 4 0.11
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:52527680 original size:6 final size:6
Alignment explanation
Indices: 52527652--52527714 Score: 60
Period size: 6 Copynumber: 10.5 Consensus size: 6
52527642 ATTGAACCCC
*
52527652 CTTTTT CTTCTT -TTTTT CTTTTTT CTTTTT CCTTTTT CTTTTT -TCTTTT
1 CTTTTT CTTTTT CTTTTT C-TTTTT CTTTTT -CTTTTT CTTTTT CT-TTTT
*
52527701 -TTCTT CTTTTT CTT
1 CTTTTT CTTTTT CTT
52527715 CCTTTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 8 0.17
6 28 0.58
7 12 0.25
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:52527689 original size:20 final size:20
Alignment explanation
Indices: 52527664--52527701 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
52527654 TTTTCTTCTT
52527664 TTTTTCTTTTTTCTTTTTCC
1 TTTTTCTTTTTTCTTTTTCC
52527684 TTTTTCTTTTTTCTTTTT
1 TTTTTCTTTTTTCTTTTT
52527702 TCTTCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTTCTTTTTTCTTTTTCC
Found at i:52527719 original size:20 final size:19
Alignment explanation
Indices: 52527652--52527727 Score: 70
Period size: 20 Copynumber: 4.1 Consensus size: 19
52527642 ATTGAACCCC
52527652 CTTTTTCTTC-TTTTT-TT
1 CTTTTTCTTCTTTTTTCTT
*
52527669 C-TTTT-TTCTTTTTCCTT
1 CTTTTTCTTCTTTTTTCTT
* *
52527686 TTTCTTTTTTCTTTTTTCTT
1 CTT-TTTCTTCTTTTTTCTT
*
52527706 CTTTTTCTTCCTTTTTTTTT
1 CTTTTTCTT-CTTTTTTCTT
52527726 CT
1 CT
52527728 GCTGGGCTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
15 3 0.06
16 8 0.17
17 3 0.06
18 1 0.02
19 8 0.17
20 24 0.51
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
CTTTTTCTTCTTTTTTCTT
Found at i:52527724 original size:14 final size:13
Alignment explanation
Indices: 52527653--52527727 Score: 55
Period size: 14 Copynumber: 5.5 Consensus size: 13
52527643 TTGAACCCCC
52527653 TTTTTCTTCTTTTT
1 TTTTTCTTC-TTTT
*
52527667 TTCTTTTTTCTTTT
1 TT-TTTCTTCTTTT
*
52527681 TCCTTT-TTCTTTT
1 T-TTTTCTTCTTTT
* *
52527694 TTCTTTTTTC-TTC
1 TT-TTTCTTCTTTT
52527707 TTTTTCTTCCTTTT
1 TTTTTCTT-CTTTT
52527721 TTTTTCT
1 TTTTTCT
52527728 GCTGGGCTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
12 5 0.10
13 16 0.33
14 22 0.45
15 6 0.12
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTCTTCTTTT
Found at i:52528021 original size:3 final size:3
Alignment explanation
Indices: 52528015--52528060 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
52528005 TTTTCTTTCT
*
52528015 TTC TTC TTC CTC TT- TTC TTC TTCC TTC TTC TTCC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT-C TTC TTC TTC TTC
52528061 AAAGTCTAGC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 6 0.16
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:52528044 original size:10 final size:10
Alignment explanation
Indices: 52528029--52528057 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
52528019 TCTTCCTCTT
52528029 TTCTTCTTCC
1 TTCTTCTTCC
52528039 TTCTTCTTCC
1 TTCTTCTTCC
52528049 TTCTTCTTC
1 TTCTTCTTC
52528058 TTCAAAGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (10 bp):
TTCTTCTTCC
Found at i:52528045 original size:13 final size:13
Alignment explanation
Indices: 52528015--52528060 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
52528005 TTTTCTTTCT
52528015 TTCTTCTTCC-TC
1 TTCTTCTTCCTTC
52528027 TT-TTCTT-CTTCC
1 TTCTTCTTCCTT-C
52528039 TTCTTCTTCCTTC
1 TTCTTCTTCCTTC
52528052 TTCTTCTTC
1 TTCTTCTTC
52528061 AAAGTCTAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 6 0.20
12 5 0.17
13 15 0.50
14 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCTTCTTCCTTC
Found at i:52528151 original size:10 final size:10
Alignment explanation
Indices: 52528116--52528165 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
52528106 ACGCCGGTAC
52528116 TCTT-TCTTT
1 TCTTCTCTTT
* *
52528125 TCTTCTCCTC
1 TCTTCTCTTT
52528135 T-TTCTCTTT
1 TCTTCTCTTT
52528144 TCTTCTCTTT
1 TCTTCTCTTT
*
52528154 TCTTCTTTTT
1 TCTTCTCTTT
52528164 TC
1 TC
52528166 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:52528163 original size:19 final size:19
Alignment explanation
Indices: 52528120--52528162 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
52528110 CGGTACTCTT
52528120 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
52528139 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
52528156 TTCTTTT
1 -TCTTTT
52528163 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:52528443 original size:29 final size:29
Alignment explanation
Indices: 52528410--52528526 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
52528400 TGTAATTTTT
*
52528410 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
52528439 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
52528469 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
52528498 GGAAAAGTTTAGGTGTCAAAATGCAATTT
1 AGAAAA-TTTAGG-GTTAAAATGAAATTT
52528527 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 16 0.22
30 54 0.75
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:52528465 original size:30 final size:30
Alignment explanation
Indices: 52528425--52528526 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
52528415 ATTTAGGATT
*
52528425 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
52528455 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* *
52528485 AAAATGAAATTT-AGGAAAAGTTTAGGTGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
52528515 AAAATGCAATTT
1 AAAATGAAATTT
52528527 TTATTTTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:52528550 original size:17 final size:18
Alignment explanation
Indices: 52528524--52528560 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
52528514 CAAAATGCAA
52528524 TTTTTATTTTTT-AAATT
1 TTTTTATTTTTTGAAATT
*
52528541 TTTTTTTTTTTTGAAATT
1 TTTTTATTTTTTGAAATT
52528559 TT
1 TT
52528561 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTTTGAAATT
Found at i:52528551 original size:18 final size:18
Alignment explanation
Indices: 52528524--52528560 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
52528514 CAAAATGCAA
*
52528524 TTTTTATTTTTTAAATTT
1 TTTTTATTTTTGAAATTT
*
52528542 TTTTTTTTTTTGAAATTT
1 TTTTTATTTTTGAAATTT
52528560 T
1 T
52528561 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTTGAAATTT
Found at i:52532083 original size:26 final size:26
Alignment explanation
Indices: 52532052--52532101 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
52532042 AAATGTGAAG
52532052 GGGGTTGCTAAGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
52532078 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
52532102 GACTCATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:52532122 original size:33 final size:33
Alignment explanation
Indices: 52532080--52532390 Score: 175
Period size: 33 Copynumber: 8.7 Consensus size: 33
52532070 TTCCCCAAGG
52532080 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
52532113 GGTTGCTAAGTGCTGATTCCACCGTATCTTGAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-T---GGT
*
52532155 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * * *
52532188 GGTTGCTAAGTGCTGATCCCACCATACTTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GAC--T-CAT-TG---GT
*
52532230 GGTTGCTAAGTGCTGATT-CCC--C-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
52532257 GGTTGCTATGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * *
52532290 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GA-C--T-CAT-TG---GT
* *
52532333 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
52532366 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
52532391 TAACGGTTAA
Statistics
Matches: 216, Mismatches: 27, Indels: 69
0.69 0.09 0.22
Matches are distributed among these distances:
27 17 0.08
28 4 0.02
31 3 0.01
32 2 0.01
33 81 0.38
34 11 0.05
35 3 0.01
36 4 0.02
37 6 0.03
38 7 0.03
39 5 0.02
40 5 0.02
41 5 0.02
42 42 0.19
43 21 0.10
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:52532201 original size:75 final size:75
Alignment explanation
Indices: 52532076--52532251 Score: 275
Period size: 75 Copynumber: 2.3 Consensus size: 75
52532066 CTGATTCCCC
* *
52532076 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-T
1 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATACT
*
52532140 CTTGAATAT-A
66 -TTAAATATGA
*
52532150 AAGGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATAC
1 AA-GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATAC
*
52532215 TTTAAATGTGA
65 TTTAAATATGA
52532226 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
52532252 CAAGGGGTTG
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
74 2 0.02
75 88 0.94
76 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCATACT
TTAAATATGA
Found at i:52532264 original size:27 final size:27
Alignment explanation
Indices: 52532226--52532278 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
52532216 TTAAATGTGA
52532226 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
*
52532253 AAGGGGTTGCTATGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
52532279 GATTCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:52532277 original size:102 final size:103
Alignment explanation
Indices: 52532153--52532354 Score: 370
Period size: 102 Copynumber: 2.0 Consensus size: 103
52532143 GAATATAAAG
52532153 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATA-CTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
52532217 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
* *
52532255 GGGGTTGCTATGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
*
52532320 TGAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
52532355 GAATCACTGG
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
102 59 0.61
103 37 0.39
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:52539518 original size:5 final size:5
Alignment explanation
Indices: 52539508--52539533 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
52539498 TGAGCATTCG
52539508 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
52539534 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:52540320 original size:31 final size:30
Alignment explanation
Indices: 52540285--52540344 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
52540275 GGAGGTGGGA
*
52540285 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
52540316 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
52540345 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:52540572 original size:9 final size:9
Alignment explanation
Indices: 52540558--52540603 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
52540548 TATAGTTTGA
52540558 TATTCGAAT
1 TATTCGAAT
52540567 TATTCGAAT
1 TATTCGAAT
52540576 TATTCGAAT
1 TATTCGAAT
*
52540585 TATTCGAGT
1 TATTCGAAT
52540594 TATTCGAAT
1 TATTCGAAT
52540603 T
1 T
52540604 CGAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:52542719 original size:30 final size:29
Alignment explanation
Indices: 52542685--52542745 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
52542675 AGAATTGTAT
*
52542685 CAAAATAAAAATTTCATGTATAAAATTGCA
1 CAAAAT-AAAAGTTCATGTATAAAATTGCA
* * *
52542715 CAAAATCAAAGTTCATGTATACAGTTGCA
1 CAAAATAAAAGTTCATGTATAAAATTGCA
52542744 CA
1 CA
52542746 TTAAACCCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.28
Consensus pattern (29 bp):
CAAAATAAAAGTTCATGTATAAAATTGCA
Found at i:52548211 original size:22 final size:21
Alignment explanation
Indices: 52548186--52548238 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
52548176 GTGTTACCAT
52548186 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTAT-GG
* * *
52548208 TTTAGGGGTTATGGTTTATGG
1 TTTAAGGTTTATGGATTATGG
52548229 TTTAAAGGTT
1 TTT-AAGGTT
52548239 AGGGTTTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (21 bp):
TTTAAGGTTTATGGATTATGG
Found at i:52548225 original size:14 final size:14
Alignment explanation
Indices: 52548186--52548318 Score: 85
Period size: 14 Copynumber: 9.3 Consensus size: 14
52548176 GTGTTACCAT
* *
52548186 TTTAAGGTTTATGG
1 TTTATGGTTTAGGG
*
52548200 ATTATGGGTTTAGGG
1 TTTAT-GGTTTAGGG
* *
52548215 GTTATGGTTTATGG
1 TTTATGGTTTAGGG
*
52548229 TTTAAAGG-TTAGGG
1 TTT-ATGGTTTAGGG
**
52548243 TTTAAAGTTTAGAGG
1 TTTATGGTTTAG-GG
*
52548258 -TTATGTGTTAAGGG
1 TTTATG-GTTTAGGG
52548272 TTTATGGTTTTAGGG
1 TTTATGG-TTTAGGG
52548287 TTT-TAGAGTTTA-GG
1 TTTAT-G-GTTTAGGG
*
52548301 TTTATGGTTTATGG
1 TTTATGGTTTAGGG
52548315 TTTA
1 TTTA
52548319 GATTAACTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
13 8 0.08
14 44 0.46
15 42 0.44
16 1 0.01
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (14 bp):
TTTATGGTTTAGGG
Found at i:52548228 original size:7 final size:7
Alignment explanation
Indices: 52548186--52548318 Score: 67
Period size: 7 Copynumber: 18.6 Consensus size: 7
52548176 GTGTTACCAT
*
52548186 TTTAAGG
1 TTTATGG
52548193 TTTATGG
1 TTTATGG
*
52548200 ATTATGGG
1 TTTAT-GG
*
52548208 TTTAGGG
1 TTTATGG
*
52548215 GTTATGG
1 TTTATGG
52548222 TTTATGG
1 TTTATGG
*
52548229 TTTAAAGG
1 TTT-ATGG
*
52548237 -TTAGGG
1 TTTATGG
**
52548243 TTTAAAG
1 TTTATGG
52548250 TTTA-GAG
1 TTTATG-G
*
52548257 GTTATGTG
1 TTTATG-G
* *
52548265 TTAAGGG
1 TTTATGG
52548272 TTTATGG
1 TTTATGG
*
52548279 TTTTAGGG
1 -TTTATGG
52548287 TTT-TAGAG
1 TTTAT-G-G
52548295 TTTA-GG
1 TTTATGG
52548301 TTTATGG
1 TTTATGG
52548308 TTTATGG
1 TTTATGG
52548315 TTTA
1 TTTA
52548319 GATTAACTAT
Statistics
Matches: 95, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
6 8 0.08
7 64 0.67
8 23 0.24
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:52548281 original size:29 final size:29
Alignment explanation
Indices: 52548211--52548324 Score: 78
Period size: 29 Copynumber: 4.0 Consensus size: 29
52548201 TTATGGGTTT
* * *
52548211 AGGGGTTATGGTTTATGGTT-TAAAGGTT-
1 AGGGTTTATGGTTTAGGGTTATAGA-GTTA
** *
52548239 AGGGTTTAAAGTTTAGAGGTTAT-GTGTTA
1 AGGGTTTATGGTTTAG-GGTTATAGAGTTA
* *
52548268 AGGGTTTATGGTTTTAGGGTTTTAGAGTTT
1 AGGGTTTATGG-TTTAGGGTTATAGAGTTA
*
52548298 A-GGTTTATGGTTTATGGTT-TAGA-TTA
1 AGGGTTTATGGTTTAGGGTTATAGAGTTA
52548324 A
1 A
52548325 CTATTGTTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
26 3 0.04
27 4 0.06
28 23 0.34
29 27 0.40
30 11 0.16
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.46
Consensus pattern (29 bp):
AGGGTTTATGGTTTAGGGTTATAGAGTTA
Found at i:52551835 original size:43 final size:42
Alignment explanation
Indices: 52551785--52552032 Score: 246
Period size: 43 Copynumber: 5.8 Consensus size: 42
52551775 AGATTATGTT
* * * *
52551785 TTTAGCGGCGTTTTTGCTAGAAGTGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTTTG-TAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * *
52551828 TATAGCGGCGTTTGTGATAAAAGTGCCACTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTTTG-TAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
52551871 TTTAGCGGCATTTGTAGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTCTTGGTC
* *
52551914 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTC-TGAGTC
1 TTTAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTCTTG-GTC
* * *
52551957 TTTAACGGCGTTTGTGGTAAAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTT-TTGTAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
52552000 TTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAA
1 TTTAGCGGCGTTT-TTGTAAAAGCGCCGCTAAA
52552033 AGCCGGTTTT
Statistics
Matches: 178, Mismatches: 24, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
42 2 0.01
43 173 0.97
44 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTGTAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:52551902 original size:86 final size:87
Alignment explanation
Indices: 52551809--52552032 Score: 296
Period size: 86 Copynumber: 2.6 Consensus size: 87
52551799 TGCTAGAAGT
* * * * *
52551809 GCCGCTAAAGGTCATGATCTATAGCGGCGTTTGTGA-TAAAAGTGCCACTAAAGGTCGTG-GTCT
1 GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGGAAAAGCGCCACTAAAGGTC-TGAGTCT
*
52551872 TTAGCGGCATTTGTAGG-AAAAGC
65 TTAACGGCATTTGT-GGTAAAAGC
*
52551895 GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGT-AGGAAAAGCGCCGCTAAAGGTCTGAGTCTT
1 GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGGAAAAGCGCCACTAAAGGTCTGAGTCTT
*
52551959 TAACGGCGTTTGTGGTAAAAGC
66 TAACGGCATTTGTGGTAAAAGC
* * *
52551981 GCTGCTAAAGGTCTTGGTCTTTAGCAGCGTTTGTG-GGAAAAGCGCCGCTAAA
1 GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGGAAAAGCGCCACTAAA
52552033 AGCCGGTTTT
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
85 5 0.04
86 119 0.96
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (87 bp):
GCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGGAAAAGCGCCACTAAAGGTCTGAGTCTT
TAACGGCATTTGTGGTAAAAGC
Done.