Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 182 of 185
Found at i:55484020 original size:89 final size:89
Alignment explanation
Indices: 55483863--55484054 Score: 205
Period size: 89 Copynumber: 2.1 Consensus size: 89
55483853 CTTTTGGGGC
* * * *
55483863 AAAAGTGTAATTTTAGCAAAAATATGGGCCAAAATGTAATTTCTTGAAAGTTTAGGTGTTAAAGT
1 AAAA-TGTAATTTTAGCAAAAATATGGGCCAAAATGTAATTTCTGGAAAGTTTAAGTGTCAAAAT
*
55483928 GT-AATTTTGAGAAAGGT-TAAGGGTT
65 GTAAATTTT-A-AAAAGTATAAGGGTT
* * * *
55483953 GAAATGTAATTTTAGC-AAAGTTTGGGGTCAAAATGTAAATTT-TGGAAAAGTTTAAG-GTCAAA
1 AAAATGTAATTTTAGCAAAAATAT-GGGCCAAAATGT-AATTTCTGG-AAAGTTTAAGTGTCAAA
*
55484015 ATGTAAATTTTAAAAAGTATAGGGGTT
63 ATGTAAATTTTAAAAAGTATAAGGGTT
55484042 AAAATGTAATTTT
1 AAAATGTAATTTT
55484055 TATTTTTTTG
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
88 10 0.12
89 53 0.62
90 23 0.27
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.35
Consensus pattern (89 bp):
AAAATGTAATTTTAGCAAAAATATGGGCCAAAATGTAATTTCTGGAAAGTTTAAGTGTCAAAATG
TAAATTTTAAAAAGTATAAGGGTT
Found at i:55485786 original size:16 final size:16
Alignment explanation
Indices: 55485762--55485794 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
55485752 TTCGCTGTAT
55485762 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
55485778 TGGATTAGAGGCGTAA
1 TGGAATAGAGGCGTAA
55485794 T
1 T
55485795 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:55485838 original size:45 final size:44
Alignment explanation
Indices: 55485774--55485863 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
55485764 GAATAGAGGC
*
55485774 GTAATGGATTAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAAT
* *
55485819 GTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
55485863 G
1 G
55485864 GAATAGAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.44
45 22 0.54
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
Found at i:55486167 original size:16 final size:17
Alignment explanation
Indices: 55486146--55486188 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
55486136 AATTATTATT
*
55486146 AAATATATTA-TAAATA
1 AAATATATAATTAAATA
*
55486162 AAATATATAATTTAATA
1 AAATATATAATTAAATA
55486179 AAATAT-TAAT
1 AAATATATAAT
55486189 AATCAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATATAATTAAATA
Found at i:55486295 original size:14 final size:15
Alignment explanation
Indices: 55486246--55486297 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
55486236 ATAAAATATA
55486246 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
55486261 TATTAAATATATTAT
1 AATTAAATATATTAT
55486276 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
55486289 AATTTAATA
1 AATTAAATA
55486298 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:55486433 original size:120 final size:119
Alignment explanation
Indices: 55486011--55486423 Score: 693
Period size: 120 Copynumber: 3.5 Consensus size: 119
55486001 ATCATATTTA
*
55486011 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTTTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAA-TTTTAATAATCAA
55486076 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
55486131 AACATAATTATTATTAAATATATTATAAATAAAATATATAATTTAATAAAATATTAATAATCAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTTTAATAATCAAT
*
55486196 ATTCTTATATGAATTTACTCAAATCATACTATATGATACTATAAAATATAAATT
66 ATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
55486250 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT-TTAATAATCAA
* *
55486315 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
65 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * * *
55486370 GAAC-TAATTAATGTTAAATATATTTTAATTAAAATATATGATTTAATAAAATTT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTT
55486424 AAAATAATTA
Statistics
Matches: 277, Mismatches: 14, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
119 118 0.43
120 156 0.56
121 3 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (119 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTTTAATAATCAAT
ATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:55486492 original size:26 final size:28
Alignment explanation
Indices: 55486463--55486523 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
55486453 TATGAATTTG
*
55486463 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
55486489 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
55486517 TAAAATT
1 TATAATT
55486524 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:55486521 original size:47 final size:46
Alignment explanation
Indices: 55486470--55486613 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
55486460 TTGTATAATT
55486470 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
55486517 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
55486561 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
55486608 TAAAAT
1 TAAAAT
55486614 TCTTGATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:55486533 original size:91 final size:91
Alignment explanation
Indices: 55486438--55486650 Score: 372
Period size: 91 Copynumber: 2.3 Consensus size: 91
55486428 TAATTATAAC
* * * * *
55486438 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
55486503 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
55486529 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
55486594 GATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTGA
55486620 TAATAAATTTTCTTATATGAATTTATACAAT
1 TAATAAATTTTCTTATATGAATTTATACAAT
55486651 AGATATTTAA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 116 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTGA
Found at i:55486627 original size:47 final size:47
Alignment explanation
Indices: 55486488--55486627 Score: 139
Period size: 47 Copynumber: 3.0 Consensus size: 47
55486478 TTATTATTAC
*
55486488 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
* * * ** * *
55486535 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTGATAATAA
55486579 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
55486626 AT
1 AT
55486628 TTTCTTATAT
Statistics
Matches: 69, Mismatches: 15, Indels: 18
0.68 0.15 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTGATAATAA
Found at i:55495418 original size:24 final size:29
Alignment explanation
Indices: 55495362--55495421 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 29
55495352 AAGTTATATA
*
55495362 TATATTTCATTGATTTTTTAATAATTTTC
1 TATATTTCATTGATTTATTAATAATTTTC
*
55495391 TATATTTC-TT-ATTTATTAA-AATTTTA
1 TATATTTCATTGATTTATTAATAATTTTC
55495417 TATAT
1 TATAT
55495422 AACCATCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 11 0.38
27 8 0.28
28 2 0.07
29 8 0.28
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (29 bp):
TATATTTCATTGATTTATTAATAATTTTC
Found at i:55499156 original size:32 final size:30
Alignment explanation
Indices: 55499120--55499190 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
55499110 GTTAGCACAG
* *
55499120 AGGTACCAACCTAAGTGACGAAATACAAGTTC
1 AGGTACCAACCTAAGT-ACGAAA-AAAAGTTA
* *
55499152 AGGTACCAA-CTAGGTTCGAAAAAAAGTTA
1 AGGTACCAACCTAAGTACGAAAAAAAGTTA
55499181 AGGTACCAAC
1 AGGTACCAAC
55499191 TAGGTACTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 15 0.44
30 5 0.15
31 5 0.15
32 9 0.26
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (30 bp):
AGGTACCAACCTAAGTACGAAAAAAAGTTA
Found at i:55499748 original size:29 final size:29
Alignment explanation
Indices: 55499699--55499755 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
55499689 CTCTTTATAC
55499699 ATTTAGAATTTAGCCCCTTTA-TTTTTAT
1 ATTTAGAATTTAGCCCCTTTACTTTTTAT
* **
55499727 ATTTAGGAATTTAGTCTTTTTACTTTTTA
1 ATTTA-GAATTTAGCCCCTTTACTTTTTA
55499756 AATATCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.56
Consensus pattern (29 bp):
ATTTAGAATTTAGCCCCTTTACTTTTTAT
Found at i:55504328 original size:89 final size:89
Alignment explanation
Indices: 55504177--55504738 Score: 836
Period size: 89 Copynumber: 6.3 Consensus size: 89
55504167 AAATGTGTAT
* * *
55504177 GTATGGGGAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGT
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
*
55504242 TTTCTTCGATCTACTCCACCACCA
66 TTTCTTCGATCTACTTCACCACCA
* * *
55504266 GTATGGGGAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGT
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
*
55504331 TTTCTTCGATCTACTCCACCACCA
66 TTTCTTCGATCTACTTCACCACCA
* * * *
55504355 GTATGGGGAGACAAGATTTGGTATCTTTGATCTACTTCACGCCAGTACGTGAAGACAAGATCTGC
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
* * * *
55504420 TTTCTTTGATCTGCTTCGCCGCCA
66 TTTCTTCGATCTACTTCACCACCA
* * *
55504444 GTATGGGAAGGCAAGATCTGTTATCTTTGATCTACTTCATGCCAGTACATGAAGACAAGATCTAC
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
*
55504509 TTTCTTCGATCTGCTTCACCACCA
66 TTTCTTCGATCTACTTCACCACCA
* * *
55504533 GTATGGGAAGGCAATATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTAC
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
* * **
55504598 TTTCTTTGATCTGCTTTGCCACCA
66 TTTCTTCGATCTACTTCACCACCA
* *
55504622 GTATAGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
1 GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
*
55504687 TTTCTTCGATCTACTTCACCATCA
66 TTTCTTCGATCTACTTCACCACCA
* *
55504711 GTATGGGCAGGCAAGATCTGTTATCTTT
1 GTATGGGAAGGCAAGATCTGGTATCTTT
55504739 CAACCTACTC
Statistics
Matches: 436, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 436 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (89 bp):
GTATGGGAAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
TTTCTTCGATCTACTTCACCACCA
Found at i:55508484 original size:24 final size:29
Alignment explanation
Indices: 55508428--55508487 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 29
55508418 AAGTTATATA
*
55508428 TATATTTCATTGATTTTTTAATAATTTTC
1 TATATTTCATTGATTTATTAATAATTTTC
*
55508457 TATATTTC-TT-ATTTATTAA-AATTTTA
1 TATATTTCATTGATTTATTAATAATTTTC
55508483 TATAT
1 TATAT
55508488 AACCATCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 11 0.38
27 8 0.28
28 2 0.07
29 8 0.28
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (29 bp):
TATATTTCATTGATTTATTAATAATTTTC
Found at i:55511989 original size:29 final size:29
Alignment explanation
Indices: 55511940--55511996 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
55511930 TTCTTTATAC
55511940 ATTTAGAATTTAGCCCCTTTA-TTTTTAT
1 ATTTAGAATTTAGCCCCTTTACTTTTTAT
* **
55511968 ATTTAGGAATTTAGTCTTTTTACTTTTTA
1 ATTTA-GAATTTAGCCCCTTTACTTTTTA
55511997 AATATCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.56
Consensus pattern (29 bp):
ATTTAGAATTTAGCCCCTTTACTTTTTAT
Found at i:55537705 original size:12 final size:12
Alignment explanation
Indices: 55537688--55537713 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
55537678 TTTTGAAATT
55537688 TAAATATATATA
1 TAAATATATATA
55537700 TAAATATATATA
1 TAAATATATATA
55537712 TA
1 TA
55537714 GTCATTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TAAATATATATA
Found at i:55538756 original size:12 final size:12
Alignment explanation
Indices: 55538734--55538764 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
55538724 TTTCATTAAA
55538734 TAAAA-AAATAT
1 TAAAACAAATAT
55538745 TAAAACAAATAT
1 TAAAACAAATAT
55538757 TAAAACAA
1 TAAAACAA
55538765 CAAACGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (12 bp):
TAAAACAAATAT
Found at i:55539582 original size:16 final size:17
Alignment explanation
Indices: 55539558--55539595 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
55539548 TGTTTTAATC
*
55539558 TTTTAATTTTCTCT-GT
1 TTTTGATTTTCTCTAGT
*
55539574 TTTTGATTTTCTTTAGT
1 TTTTGATTTTCTCTAGT
55539591 TTTTG
1 TTTTG
55539596 TTTGAAGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.11, C:0.08, G:0.11, T:0.71
Consensus pattern (17 bp):
TTTTGATTTTCTCTAGT
Found at i:55540814 original size:223 final size:223
Alignment explanation
Indices: 55540426--55540878 Score: 897
Period size: 223 Copynumber: 2.0 Consensus size: 223
55540416 TTTGAATTTT
*
55540426 GAGTTGAATTCAAACTTATTAGAATTTAAATTCAACTTAGCTCGATTATAGTTTTAGTACGTCAA
1 GAGTTGAATTCAAACTTATTAGAACTTAAATTCAACTTAGCTCGATTATAGTTTTAGTACGTCAA
55540491 ATCAAGCTTGAACTTAAAATCAACATAATTTTCAGATTAAAATTGAGCTCAAACAATTGAGTTTG
66 ATCAAGCTTGAACTTAAAATCAACATAATTTTCAGATTAAAATTGAGCTCAAACAATTGAGTTTG
55540556 AGGTTGAGTTTGAGAATCGAGCTTACTTTAATCGGATAAACAAGTCTAATCAAATGAGCTTGAGT
131 AGGTTGAGTTTGAGAATCGAGCTTACTTTAATCGGATAAACAAGTCTAATCAAATGAGCTTGAGT
55540621 AGTTTGATCTTTATTTTGAATTGAGCTC
196 AGTTTGATCTTTATTTTGAATTGAGCTC
55540649 GAGTTGAATTCAAACTTATTAGAACTTAAATTCAACTTAGCTCGATTATAGTTTTAGTACGTCAA
1 GAGTTGAATTCAAACTTATTAGAACTTAAATTCAACTTAGCTCGATTATAGTTTTAGTACGTCAA
55540714 ATCAAGCTTGAACTTAAAATCAACATAATTTTCAGATTAAAATTGAGCTCAAACAATTGAGTTTG
66 ATCAAGCTTGAACTTAAAATCAACATAATTTTCAGATTAAAATTGAGCTCAAACAATTGAGTTTG
55540779 AGGTTGAGTTTGAGAATCGAGCTTACTTTAATCGGATAAACAAGTCTAATCAAATGAGCTTGAGT
131 AGGTTGAGTTTGAGAATCGAGCTTACTTTAATCGGATAAACAAGTCTAATCAAATGAGCTTGAGT
55540844 AGTTTGATCTTTATTTTGAATTGAGCTC
196 AGTTTGATCTTTATTTTGAATTGAGCTC
55540872 GAGTTGA
1 GAGTTGA
55540879 GTTTCAAGCT
Statistics
Matches: 229, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
223 229 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (223 bp):
GAGTTGAATTCAAACTTATTAGAACTTAAATTCAACTTAGCTCGATTATAGTTTTAGTACGTCAA
ATCAAGCTTGAACTTAAAATCAACATAATTTTCAGATTAAAATTGAGCTCAAACAATTGAGTTTG
AGGTTGAGTTTGAGAATCGAGCTTACTTTAATCGGATAAACAAGTCTAATCAAATGAGCTTGAGT
AGTTTGATCTTTATTTTGAATTGAGCTC
Found at i:55548205 original size:19 final size:19
Alignment explanation
Indices: 55548183--55548222 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
55548173 ATTTTCAACA
55548183 TAAAATTAAATA-AAATAAT
1 TAAAATTAAATATAAA-AAT
*
55548202 TAAAATTGAATATAAAAAT
1 TAAAATTAAATATAAAAAT
55548221 TA
1 TA
55548223 CACTAACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAATTAAATATAAAAAT
Found at i:55549654 original size:22 final size:22
Alignment explanation
Indices: 55549609--55549657 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
55549599 ATTATCCATA
*
55549609 ATATTACATTTATTTCTGTTAG
1 ATATTACATTTATTTCTGTAAG
*
55549631 ATATTACTTTTATTT-TGATAAG
1 ATATTACATTTATTTCTG-TAAG
55549653 ATATT
1 ATATT
55549658 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.55
Consensus pattern (22 bp):
ATATTACATTTATTTCTGTAAG
Found at i:55555970 original size:124 final size:124
Alignment explanation
Indices: 55555811--55556038 Score: 429
Period size: 124 Copynumber: 1.8 Consensus size: 124
55555801 CCTTCATATA
*
55555811 TATATATATATATGAAGGAAACGCCAGAAGATTGGAATAAATTCAAAGAAGAAAAAAGAGCAAAA
1 TATATATATATATGAAGGAAACGCCAAAAGATTGGAATAAATTCAAAGAAGAAAAAAGAGCAAAA
*
55555876 CAAGAGGATCGGAGATGGCGTGCAGAGCGGCATTGCGTTAATTTAACGAACAAAGCCTT
66 CAAGAGGATCGGAGATGGCGTGCAGAGCGGCATTACGTTAATTTAACGAACAAAGCCTT
55555935 TATATATATATATGAAGGAAACGCCAAAAGATTGGAATAAATTCAAAGAAGAAAAAAGAGCAAAA
1 TATATATATATATGAAGGAAACGCCAAAAGATTGGAATAAATTCAAAGAAGAAAAAAGAGCAAAA
*
55556000 CAAGAGGATCGGAGATGGCGTGCAGAGCGGTATTACGTT
66 CAAGAGGATCGGAGATGGCGTGCAGAGCGGCATTACGTT
55556039 CCATTTTCAT
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 101 1.00
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (124 bp):
TATATATATATATGAAGGAAACGCCAAAAGATTGGAATAAATTCAAAGAAGAAAAAAGAGCAAAA
CAAGAGGATCGGAGATGGCGTGCAGAGCGGCATTACGTTAATTTAACGAACAAAGCCTT
Found at i:55556802 original size:21 final size:22
Alignment explanation
Indices: 55556747--55556802 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
55556737 AAATAGACTT
55556747 AATATTAATTTTGCTAAATAGTA
1 AATATTAATTTT-CTAAATAGTA
* *
55556770 GATGA-T-ATTTTTTAAATAGTA
1 AAT-ATTAATTTTCTAAATAGTA
55556791 AATATTAATTTT
1 AATATTAATTTT
55556803 ATTCCAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.04
21 12 0.44
22 10 0.37
23 3 0.11
24 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (22 bp):
AATATTAATTTTCTAAATAGTA
Found at i:55562147 original size:31 final size:31
Alignment explanation
Indices: 55562094--55562168 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
55562084 TATAACATTA
* * *
55562094 GGTACTTGAACTTGATATTTTTTCTTAAATT
1 GGTACTTAAACTTGACACTTTTTCTTAAATT
*
55562125 GGTACTTAAATTTGACACTTTTTCTTAAATT
1 GGTACTTAAACTTGACACTTTTTCTTAAATT
55562156 GGTACTTAAACTT
1 GGTACTTAAACTT
55562169 ACTTTTTGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (31 bp):
GGTACTTAAACTTGACACTTTTTCTTAAATT
Found at i:55565729 original size:30 final size:30
Alignment explanation
Indices: 55565695--55565761 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
55565685 ATAAGTTACA
* * *
55565695 ATTTAGTCATTGAATTATTCGAAA-GTTTTC
1 ATTTAGTCACTAAACTATTC-AAATGTTTTC
*
55565725 ATTTAAGTCACTAAACTATTCAAATGTTTTT
1 ATTT-AGTCACTAAACTATTCAAATGTTTTC
55565756 ATTTAG
1 ATTTAG
55565762 AAAAAGTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
30 9 0.29
31 22 0.71
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (30 bp):
ATTTAGTCACTAAACTATTCAAATGTTTTC
Found at i:55568308 original size:18 final size:18
Alignment explanation
Indices: 55568275--55568327 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
55568265 ATTCACCTAA
*
55568275 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
55568294 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
55568312 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
55568328 TAATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:55568445 original size:9 final size:9
Alignment explanation
Indices: 55568431--55568531 Score: 139
Period size: 9 Copynumber: 11.2 Consensus size: 9
55568421 GTAATGATTC
55568431 AATTCGGTT
1 AATTCGGTT
*
55568440 AATTCGGGT
1 AATTCGGTT
* *
55568449 AATTTGGGT
1 AATTCGGTT
55568458 AATTCGGTT
1 AATTCGGTT
*
55568467 AATTCGGAT
1 AATTCGGTT
55568476 AATTCGGTT
1 AATTCGGTT
*
55568485 AATTCGGGT
1 AATTCGGTT
*
55568494 ACTTCGGTT
1 AATTCGGTT
*
55568503 AATTAGGTT
1 AATTCGGTT
55568512 AATTCGGTT
1 AATTCGGTT
55568521 AATTCGGTT
1 AATTCGGTT
55568530 AA
1 AA
55568532 CCGACCGAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 80 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:55568747 original size:27 final size:28
Alignment explanation
Indices: 55568710--55568807 Score: 83
Period size: 27 Copynumber: 3.5 Consensus size: 28
55568700 AGGGGTCTAA
* * *
55568710 AATATTATTTTTCAGTTTTTAAGGG-TC
1 AATATTTTTTTTCAGCTTTTAAGGGCCC
*
55568737 AATATTTTTTTTTAGCTTTTAAGGGCCC
1 AATATTTTTTTTCAGCTTTTAAGGGCCC
* * *
55568765 AA-ATTTTTTTTACCAACTTTTAAATGGCCT
1 AATATTTTTTTT--CAGCTTTT-AAGGGCCC
*
55568795 AAAATTTTTTTTC
1 AATATTTTTTTTC
55568808 TCAAACTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
27 31 0.53
28 3 0.05
29 7 0.12
30 8 0.14
31 9 0.16
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (28 bp):
AATATTTTTTTTCAGCTTTTAAGGGCCC
Found at i:55569701 original size:22 final size:21
Alignment explanation
Indices: 55569676--55569722 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
55569666 TAAAATTTAT
*
55569676 TTTAT-AAATTAATATTTATATA
1 TTTATAAAATT-ATAATTATA-A
55569698 TTTATAAAATTATAATTATAA
1 TTTATAAAATTATAATTATAA
55569719 TTTA
1 TTTA
55569723 ATTCTATTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 5 0.22
22 13 0.57
23 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTATAAAATTATAATTATAA
Found at i:55572238 original size:5 final size:5
Alignment explanation
Indices: 55572228--55572253 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
55572218 CCTTTTTCAC
55572228 TAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA T
55572254 TTTAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:55580424 original size:20 final size:21
Alignment explanation
Indices: 55580399--55580438 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
55580389 GTCATAACTT
*
55580399 AATAAAAATATT-TTTTTATG
1 AATAAAAAAATTATTTTTATG
55580419 AATAAAAAAATTATTTTTAT
1 AATAAAAAAATTATTTTTAT
55580439 AGTATATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
AATAAAAAAATTATTTTTATG
Found at i:55593519 original size:20 final size:22
Alignment explanation
Indices: 55593496--55593536 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
55593486 ATTTGATTAT
55593496 TTAAAAATAA-A-ATATTTTTA
1 TTAAAAATAATATATATTTTTA
*
55593516 TTAAAATTAATATATATTTTT
1 TTAAAAATAATATATATTTTT
55593537 TATAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 1 0.06
22 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAAAATAATATATATTTTTA
Found at i:55593543 original size:20 final size:20
Alignment explanation
Indices: 55593496--55593545 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
55593486 ATTTGATTAT
* *
55593496 TTAAAAATAAAATATTTTTA
1 TTAAAATTAATATATTTTTA
55593516 TTAAAATTAATATATATTTT-
1 TTAAAATTAATATAT-TTTTA
*
55593536 TTATAATTAA
1 TTAAAATTAA
55593546 ATTTGCAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAAAATTAATATATTTTTA
Found at i:55603154 original size:20 final size:20
Alignment explanation
Indices: 55603122--55603159 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
55603112 ATCTTGATTC
55603122 TTAAAAAATTAAAATAAAACT
1 TTAAAAAATTAAAA-AAAACT
55603143 TTAAAAAA-TAAAAAAAA
1 TTAAAAAATTAAAAAAAA
55603160 TTAAATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (20 bp):
TTAAAAAATTAAAAAAAACT
Found at i:55609502 original size:25 final size:25
Alignment explanation
Indices: 55609474--55609528 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
55609464 TGCCTGGCCC
55609474 AATAAATAC-CAAAAAAGCAAATAAA
1 AATAAA-ACACAAAAAAGCAAATAAA
* *
55609499 AATAAAACTATAAAAAATCAAATAAA
1 AATAAAAC-ACAAAAAAGCAAATAAA
55609525 AATA
1 AATA
55609529 GTAAATAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 6 0.23
26 18 0.69
ACGTcount: A:0.73, C:0.09, G:0.02, T:0.16
Consensus pattern (25 bp):
AATAAAACACAAAAAAGCAAATAAA
Found at i:55610076 original size:18 final size:18
Alignment explanation
Indices: 55610053--55610088 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
55610043 GTGATTTGAA
55610053 TTTTTTCTTTTTCCTTTC
1 TTTTTTCTTTTTCCTTTC
* *
55610071 TTTTTTGTTTTTTCTTTC
1 TTTTTTCTTTTTCCTTTC
55610089 GGTTCTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.81
Consensus pattern (18 bp):
TTTTTTCTTTTTCCTTTC
Found at i:55610838 original size:23 final size:23
Alignment explanation
Indices: 55610812--55610867 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
55610802 TTATAAATTC
55610812 TTTTATTTTATTATATAGTATTA
1 TTTTATTTTATTATATAGTATTA
* *
55610835 TTTTATGTTT-TTGTATATTATTA
1 TTTTAT-TTTATTATATAGTATTA
* *
55610858 CTTAATTTTA
1 TTTTATTTTA
55610868 CAAATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
22 3 0.11
23 21 0.78
24 3 0.11
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTATTTTATTATATAGTATTA
Found at i:55616551 original size:23 final size:24
Alignment explanation
Indices: 55616505--55616551 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
55616495 GCATTCTTTT
* *
55616505 TAAAAGTGAAAATTAAAAATCAAG
1 TAAAAGTGAAAATGAAAAAACAAG
*
55616529 TAAAATTGAAAA-GAAAAAACAAG
1 TAAAAGTGAAAATGAAAAAACAAG
55616552 CGAATGATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.66, C:0.04, G:0.13, T:0.17
Consensus pattern (24 bp):
TAAAAGTGAAAATGAAAAAACAAG
Found at i:55618532 original size:23 final size:23
Alignment explanation
Indices: 55618506--55618595 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 23
55618496 GAAAAGTTAA
55618506 AAGAGTGAAGAGACTTGAATATG
1 AAGAGTGAAGAGACTTGAATATG
*
55618529 AAGAGTGAAGAGACTTGAAGATG
1 AAGAGTGAAGAGACTTGAATATG
* * * * * *
55618552 AAAAAT-TATACAC---ATTATG
1 AAGAGTGAAGAGACTTGAATATG
55618571 AAGAGTGAAGAGACTTGAATATG
1 AAGAGTGAAGAGACTTGAATATG
55618594 AA
1 AA
55618596 AAGTTATACA
Statistics
Matches: 49, Mismatches: 14, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
19 8 0.16
20 4 0.08
22 4 0.08
23 33 0.67
ACGTcount: A:0.47, C:0.06, G:0.26, T:0.22
Consensus pattern (23 bp):
AAGAGTGAAGAGACTTGAATATG
Found at i:55618584 original size:42 final size:42
Alignment explanation
Indices: 55618525--55618605 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
55618515 GAGACTTGAA
55618525 TATGAAGAGTGAAGAGACTTGAAGATGAAAAATTATACACAT
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAATTATACACAT
* *
55618567 TATGAAGAGTGAAGAGACTTGAATATGAAAAGTTATACA
1 TATGAAGAGTGAAGAGACTTGAAGATGAAAAATTATACA
55618606 TATGCATGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (42 bp):
TATGAAGAGTGAAGAGACTTGAAGATGAAAAATTATACACAT
Found at i:55620513 original size:27 final size:29
Alignment explanation
Indices: 55620470--55620534 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
55620460 CATTGTAAGC
* **
55620470 ACATAT-ATATTAGTAAACTTTA-AAAAT
1 ACATATAAAATTAGTAAAAATTATAAAAT
55620497 ACATATAAAATTA-TAAAAATTATAAAAT
1 ACATATAAAATTAGTAAAAATTATAAAAT
*
55620525 TCATATAAAA
1 ACATATAAAA
55620535 ATATTTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (29 bp):
ACATATAAAATTAGTAAAAATTATAAAAT
Found at i:55621110 original size:16 final size:16
Alignment explanation
Indices: 55621077--55621110 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
55621067 TGTTCCTGTT
* *
55621077 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
55621093 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
55621109 AA
1 AA
55621111 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:55623936 original size:21 final size:21
Alignment explanation
Indices: 55623910--55623950 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
55623900 AGACGAGCAA
* *
55623910 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
55623931 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
55623951 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:55625889 original size:16 final size:16
Alignment explanation
Indices: 55625856--55625889 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
55625846 GGAGATTGTT
* *
55625856 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
55625872 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
55625888 AA
1 AA
55625890 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:55628628 original size:31 final size:30
Alignment explanation
Indices: 55628593--55628650 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
55628583 TTTTTTAGTT
55628593 AAATTTAG-CAGTCAATCTTTTAAAAAGAGTA
1 AAATTTAGCCA-TCAA-CTTTTAAAAAGAGTA
*
55628624 AAATTTAGCCATCCACTTTTAAAAAGA
1 AAATTTAGCCATCAACTTTTAAAAAGA
55628651 ATTTAATTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 12 0.48
31 11 0.44
32 2 0.08
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (30 bp):
AAATTTAGCCATCAACTTTTAAAAAGAGTA
Found at i:55631739 original size:36 final size:36
Alignment explanation
Indices: 55631687--55631760 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
55631677 CAAAATCTTC
* *
55631687 TCCGTAGTACTTGCATCATTGATTCGGTTTTTGAAT
1 TCCGAAGTACTTGCATCATTGAATCGGTTTTTGAAT
55631723 TCCGAAGTACTTGCATCATTGAATCGGTTTTTGAAT
1 TCCGAAGTACTTGCATCATTGAATCGGTTTTTGAAT
55631759 TC
1 TC
55631761 TTTCCTTACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (36 bp):
TCCGAAGTACTTGCATCATTGAATCGGTTTTTGAAT
Found at i:55631812 original size:21 final size:21
Alignment explanation
Indices: 55631782--55631821 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
55631772 CGATAGAAAG
* *
55631782 AAAAATAAAATCAGATTTTAT
1 AAAAAAAAAACCAGATTTTAT
55631803 AAAAAAAAAACCAGATTTT
1 AAAAAAAAAACCAGATTTT
55631822 GTCGAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (21 bp):
AAAAAAAAAACCAGATTTTAT
Found at i:55638198 original size:25 final size:25
Alignment explanation
Indices: 55638169--55638244 Score: 104
Period size: 25 Copynumber: 3.1 Consensus size: 25
55638159 TTGAGATTTC
55638169 CAATCTATTATATTTGATGTCTCAA
1 CAATCTATTATATTTGATGTCTCAA
*
55638194 CAATCTATTATATTTGA-GCTTTC--
1 CAATCTATTATATTTGATG-TCTCAA
*
55638217 CAACCTATTATATTTGATGTCTCAA
1 CAATCTATTATATTTGATGTCTCAA
55638242 CAA
1 CAA
55638245 CCTCGGCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 19 0.43
24 2 0.05
25 23 0.52
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (25 bp):
CAATCTATTATATTTGATGTCTCAA
Found at i:55638228 original size:23 final size:22
Alignment explanation
Indices: 55638158--55638233 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 22
55638148 GTGAAGTCAT
55638158 TTTGAGATTTCCAATCTATTATA
1 TTTGAG-TTTCCAATCTATTATA
*
55638181 TTTGATGTCTCAACAATCTATTATA
1 TTTGA-GTTTC--CAATCTATTATA
*
55638206 TTTGAGCTTTCCAACCTATTATA
1 TTTGAG-TTTCCAATCTATTATA
55638229 TTTGA
1 TTTGA
55638234 TGTCTCAACA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
23 24 0.52
24 2 0.04
25 20 0.43
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (22 bp):
TTTGAGTTTCCAATCTATTATA
Found at i:55648528 original size:21 final size:21
Alignment explanation
Indices: 55648502--55648544 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
55648492 CCATCTGCTC
* *
55648502 ACACTCCACCTGTTTTGGAGT
1 ACACTCCACCTGCTGTGGAGT
55648523 ACACTCCACCTGCTGTGGAGT
1 ACACTCCACCTGCTGTGGAGT
55648544 A
1 A
55648545 TTGCTCGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (21 bp):
ACACTCCACCTGCTGTGGAGT
Found at i:55653683 original size:42 final size:44
Alignment explanation
Indices: 55653630--55653715 Score: 131
Period size: 42 Copynumber: 2.0 Consensus size: 44
55653620 TTGGGAAAAT
* *
55653630 AATTCTCTTATTCTAATAAACTATTTAAACATAAAA-AAAATAA
1 AATTCTCTTATTCTAATAAACTACTAAAACATAAAATAAAATAA
*
55653673 AATT-TCTTATTCTAATAAACTACTAAAAGATAAAATAAAATAA
1 AATTCTCTTATTCTAATAAACTACTAAAACATAAAATAAAATAA
55653716 TCTTAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 28 0.72
43 11 0.28
ACGTcount: A:0.55, C:0.10, G:0.01, T:0.34
Consensus pattern (44 bp):
AATTCTCTTATTCTAATAAACTACTAAAACATAAAATAAAATAA
Found at i:55654752 original size:22 final size:23
Alignment explanation
Indices: 55654724--55654787 Score: 85
Period size: 22 Copynumber: 2.8 Consensus size: 23
55654714 TTTAGGGTTT
55654724 GGGATTTAAGGTTTAGGGCTA-G
1 GGGATTTAAGGTTTAGGGCTAGG
*
55654746 GGGATTTAAGGTTTAGGGGTTAGG
1 GGGATTTAAGGTTTA-GGGCTAGG
* *
55654770 GGGATTTAGGGGTTAGGG
1 GGGATTTAAGGTTTAGGG
55654788 ATTTGGAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 15 0.41
23 8 0.22
24 14 0.38
ACGTcount: A:0.20, C:0.02, G:0.47, T:0.31
Consensus pattern (23 bp):
GGGATTTAAGGTTTAGGGCTAGG
Found at i:55654790 original size:15 final size:15
Alignment explanation
Indices: 55654701--55654791 Score: 55
Period size: 15 Copynumber: 6.1 Consensus size: 15
55654691 TTTTAAGGAG
* *
55654701 TAGGGGGTATGGATT
1 TAGGGGTTAGGGATT
*
55654716 TA-GGGTTTGGGATT
1 TAGGGGTTAGGGATT
* * *
55654730 TAAGGTTTAGGG--C
1 TAGGGGTTAGGGATT
*
55654743 TAGGGGATTTAAGG-TT
1 TAGGGG--TTAGGGATT
55654759 TAGGGGTTAGGGGGATT
1 TAGGGGTTA--GGGATT
55654776 TAGGGGTTAGGGATT
1 TAGGGGTTAGGGATT
55654791 T
1 T
55654792 GGAGTTTACG
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
13 4 0.07
14 14 0.24
15 21 0.36
16 8 0.14
17 11 0.19
ACGTcount: A:0.20, C:0.01, G:0.44, T:0.35
Consensus pattern (15 bp):
TAGGGGTTAGGGATT
Found at i:55655178 original size:19 final size:19
Alignment explanation
Indices: 55655154--55655195 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
55655144 AAATATAAGA
55655154 AAAAATAAAATAAAAAAAT
1 AAAAATAAAATAAAAAAAT
* *
55655173 AAAAATGAAATAAAAAACT
1 AAAAATAAAATAAAAAAAT
55655192 AAAA
1 AAAA
55655196 TTTATACATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAAATAAAATAAAAAAAT
Found at i:55659567 original size:23 final size:23
Alignment explanation
Indices: 55659541--55659615 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
55659531 ATAAGTGCCA
* *
55659541 CACTGATACGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
55659564 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
55659587 CACTGAAATGTAGCTGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
55659610 CACTGA
1 CACTGA
55659616 CCAATAACAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:55661946 original size:21 final size:21
Alignment explanation
Indices: 55661920--55661969 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
55661910 TTACAACTTA
55661920 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
* * *
55661941 AAGCAGAGGCTGCAGTGAGGG
1 AAGCAGAGGCAGCAGCGAGAG
55661962 AAGCAGAG
1 AAGCAGAG
55661970 CAGAGCAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.44, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCGAGAG
Found at i:55662145 original size:21 final size:20
Alignment explanation
Indices: 55662119--55662159 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
55662109 ATAATATGAA
* *
55662119 TTATATTTTATTTATTTATTT
1 TTATATTATA-TTATTCATTT
55662140 TTATATTATATTATTCATTT
1 TTATATTATATTATTCATTT
55662160 AATTTGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATATTATATTATTCATTT
Found at i:55662532 original size:43 final size:43
Alignment explanation
Indices: 55662322--55662547 Score: 256
Period size: 43 Copynumber: 5.3 Consensus size: 43
55662312 CACCAAACAA
* * * ** *
55662322 TAGCGGCATTTGTGGGAAAAGCACCGCTAAAAGTCATGTTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACATGACCTT
** * * *
55662365 TAGCAACGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACTTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACATGACCTT
* * *
55662408 TAGCGGCGCTTGTGGGAAAAGCGCAGCTAAAAGACATGACATT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACATGACCTT
* *
55662451 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACATGACCTT
* * *
55662494 TAGTGGCGTTTGAGGGAAAAACGCCGCT-AAAGAACATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAG-ACATGACCTT
*
55662537 TAGCGACGTTT
1 TAGCGGCGTTT
55662548 ATAGAAATAA
Statistics
Matches: 154, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 4 0.03
43 150 0.97
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACATGACCTT
Found at i:55662684 original size:22 final size:22
Alignment explanation
Indices: 55662641--55662684 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
55662631 TAGTGGCGCT
* **
55662641 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAACCTA
55662663 AAAAAACGCCGCTAAAAACCTA
1 AAAAAACGCCGCTAAAAACCTA
55662685 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:55665350 original size:26 final size:26
Alignment explanation
Indices: 55665310--55665361 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
55665300 CCACAAAATG
55665310 AAAGTAAAGACAAAAAGTTGTTCAAT
1 AAAGTAAAGACAAAAAGTTGTTCAAT
*
55665336 AAAGTAAAGATAAAAAGTTGTTCAAT
1 AAAGTAAAGACAAAAAGTTGTTCAAT
55665362 TTTTGATTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.25
Consensus pattern (26 bp):
AAAGTAAAGACAAAAAGTTGTTCAAT
Found at i:55669286 original size:13 final size:13
Alignment explanation
Indices: 55669268--55669295 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
55669258 TATTTTTAAA
55669268 ATATGTATTTTAT
1 ATATGTATTTTAT
55669281 ATATGTATTTTAT
1 ATATGTATTTTAT
55669294 AT
1 AT
55669296 TTTATGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (13 bp):
ATATGTATTTTAT
Found at i:55670214 original size:110 final size:110
Alignment explanation
Indices: 55670009--55670215 Score: 326
Period size: 110 Copynumber: 1.9 Consensus size: 110
55669999 TTTTGTAAAA
* * *
55670009 AATAAGGCAATGTTTTGCATTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGGTTT
1 AATAAGGCAATATTTTGCATTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGGATT
*
55670074 TCTCGTTCGACCAAATAGCCGAATATCTTTTTAAAAAATTTTCAG
66 TCTCGTTCGACCAAATAGCCAAATATCTTTTTAAAAAATTTTCAG
* * *
55670119 AATAAGGCAATATTTTGCGTTTGGAAATTCAAGGAAACGTGCCCTAATGTGTTGGGTTT-TGATT
1 AATAAGGCAATATTTTGCATTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGGATT
* *
55670183 TCTCGTTGGACCAAATAGCCAAATATCCTTTTA
66 TCTCGTTCGACCAAATAGCCAAATATCTTTTTA
55670216 TATTTTAATC
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
109 33 0.38
110 55 0.62
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (110 bp):
AATAAGGCAATATTTTGCATTTGGAAATTCAAGGAAACGTGCCCTAATGTGCTGGGTTTCGGATT
TCTCGTTCGACCAAATAGCCAAATATCTTTTTAAAAAATTTTCAG
Found at i:55671411 original size:42 final size:41
Alignment explanation
Indices: 55671345--55671488 Score: 139
Period size: 42 Copynumber: 3.4 Consensus size: 41
55671335 TATGTGAGGA
* *
55671345 TCTTTAGCAGCGCTTATATGAGAAACGCCGCTA-AAGTTA-GG
1 TCTTTAGCGGCGCTT-T-TGAGAAACGCCGCTATAAGTAATGG
* *
55671386 ATCTTTAGCGGCGCTTTTGGAAGAAACGCTGCTATAAGTGATGG
1 -TCTTTAGCGGCGCTTTT-G-AGAAACGCCGCTATAAGTAATGG
* * * *
55671430 CCTTTAGTGGCGCTTTTTGATAAACACCGCTATAAGTAATGG
1 TCTTTAGCGGCGC-TTTTGAGAAACGCCGCTATAAGTAATGG
*
55671472 TCTTTAGCGGAGCTTTT
1 TCTTTAGCGGCGCTTTT
55671489 TTACAAATGC
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 6 0.07
42 55 0.65
43 17 0.20
44 6 0.07
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TCTTTAGCGGCGCTTTTGAGAAACGCCGCTATAAGTAATGG
Found at i:55675587 original size:19 final size:20
Alignment explanation
Indices: 55675551--55675597 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
55675541 AATTTTTTTC
*
55675551 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAA
55675572 TATAAAATAC-ATACAAAAA
1 TATAAAATACAATACAAAAA
55675591 TATAAAA
1 TATAAAA
55675598 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (20 bp):
TATAAAATACAATACAAAAA
Found at i:55675600 original size:20 final size:21
Alignment explanation
Indices: 55675551--55675597 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
55675541 AATTTTTTTC
*
55675551 TATAAAATACATATACAAAAT
1 TATAAAATACATACACAAAAT
55675572 TATAAAATACATACA-AAAA-
1 TATAAAATACATACACAAAAT
55675591 TATAAAA
1 TATAAAA
55675598 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
TATAAAATACATACACAAAAT
Found at i:55679132 original size:38 final size:38
Alignment explanation
Indices: 55679081--55679163 Score: 150
Period size: 38 Copynumber: 2.2 Consensus size: 38
55679071 AACGAAGGGT
55679081 AAAAAC-AAAGTTTTGTGTTTGAAAGATGAAAAACAGA
1 AAAAACGAAAGTTTTGTGTTTGAAAGATGAAAAACAGA
*
55679118 AAAAACGATAGTTTTGTGTTTGAAAGATGAAAAACAGA
1 AAAAACGAAAGTTTTGTGTTTGAAAGATGAAAAACAGA
55679156 AAAAACGA
1 AAAAACGA
55679164 GTGCTAGATG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 6 0.14
38 38 0.86
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.23
Consensus pattern (38 bp):
AAAAACGAAAGTTTTGTGTTTGAAAGATGAAAAACAGA
Found at i:55680952 original size:15 final size:15
Alignment explanation
Indices: 55680932--55680960 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
55680922 CGCAGGGCCA
55680932 GTTGCAAGTGAGGTC
1 GTTGCAAGTGAGGTC
55680947 GTTGCAAGTGAGGT
1 GTTGCAAGTGAGGT
55680961 GTCGCGAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.41, T:0.28
Consensus pattern (15 bp):
GTTGCAAGTGAGGTC
Found at i:55684662 original size:43 final size:42
Alignment explanation
Indices: 55684614--55684729 Score: 117
Period size: 42 Copynumber: 2.7 Consensus size: 42
55684604 TATTAGGAAA
* *
55684614 AAACGCCACTATAGGTGA-GGATCTTTAGCAGCGCTTATATGAG
1 AAACGCCACTATAAGTGATGG-CCTTTAGCAGCGCTT-TATGAG
* * * *
55684657 AAACGCCGCTATAAGTGATGGCCTTTAGCGGCGCTTTTTGAT
1 AAACGCCACTATAAGTGATGGCCTTTAGCAGCGCTTTATGAG
** * *
55684699 AAACGCCGTTATAAGTAATGGTCTTTAGCAG
1 AAACGCCACTATAAGTGATGGCCTTTAGCAG
55684730 AGTTTTTTAC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 31 0.50
43 29 0.47
44 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (42 bp):
AAACGCCACTATAAGTGATGGCCTTTAGCAGCGCTTTATGAG
Found at i:55684712 original size:42 final size:43
Alignment explanation
Indices: 55684636--55684729 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 43
55684626 AGGTGAGGAT
*
55684636 CTTTAGCAGCGCTTATATGAGAAACGCCGCTATAAGTGATGGC
1 CTTTAGCAGCGCTTATATGAGAAACGCCGCTATAAGTAATGGC
* * * * *
55684679 CTTTAGCGGCGCTT-TTTGATAAACGCCGTTATAAGTAATGGT
1 CTTTAGCAGCGCTTATATGAGAAACGCCGCTATAAGTAATGGC
55684721 CTTTAGCAG
1 CTTTAGCAG
55684730 AGTTTTTTAC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 31 0.70
43 13 0.30
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
CTTTAGCAGCGCTTATATGAGAAACGCCGCTATAAGTAATGGC
Found at i:55684801 original size:75 final size:75
Alignment explanation
Indices: 55684674--55684819 Score: 222
Period size: 75 Copynumber: 1.9 Consensus size: 75
55684664 GCTATAAGTG
* *
55684674 ATGGCCTTTAGCGGCGCTTTTTGATAAACGCCGTTATAAGTAATGGTCTTTAGCAGAG-TTTTTT
1 ATGGCCTTTAGCGGCGCTTTTTGACAAACGCCGCTATAAGTAATGGTCTTTAGCAGAGCTTTTTT
55684738 ACAAATGCTC
66 ACAAATGCTC
* * *
55684748 ATGGTCTTTAGCGGCGCTTTTTTTACAAACGCCGCTATAAGTCATGGTCTTTAGCAGAGCTTTTT
1 ATGGCCTTTAGCGGCGC-TTTTTGACAAACGCCGCTATAAGTAATGGTCTTTAGCAGAGC-TTTT
55684813 TTACAAA
64 TTACAAA
55684820 AGCCGTTAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
74 16 0.25
75 37 0.58
77 11 0.17
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (75 bp):
ATGGCCTTTAGCGGCGCTTTTTGACAAACGCCGCTATAAGTAATGGTCTTTAGCAGAGCTTTTTT
ACAAATGCTC
Found at i:55687695 original size:16 final size:16
Alignment explanation
Indices: 55687670--55687701 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
55687660 ATCTGTGGGG
55687670 ACGAAAGATTTTTCAA
1 ACGAAAGATTTTTCAA
*
55687686 ACGAAGGATTTTTCAA
1 ACGAAAGATTTTTCAA
55687702 CCCTTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (16 bp):
ACGAAAGATTTTTCAA
Found at i:55688878 original size:19 final size:20
Alignment explanation
Indices: 55688842--55688888 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
55688832 AACTTTTTTC
*
55688842 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAA
55688863 TATAAAATAC-ATACAAAAA
1 TATAAAATACAATACAAAAA
55688882 TATAAAA
1 TATAAAA
55688889 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (20 bp):
TATAAAATACAATACAAAAA
Found at i:55688891 original size:20 final size:21
Alignment explanation
Indices: 55688842--55688888 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
55688832 AACTTTTTTC
*
55688842 TATAAAATACATATACAAAAT
1 TATAAAATACATACACAAAAT
55688863 TATAAAATACATACA-AAAA-
1 TATAAAATACATACACAAAAT
55688882 TATAAAA
1 TATAAAA
55688889 ATATTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
TATAAAATACATACACAAAAT
Found at i:55690661 original size:17 final size:18
Alignment explanation
Indices: 55690627--55690672 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
55690617 CCGTTATGTC
55690627 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
55690642 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
55690659 CGCGACCGCGACCG
1 CGCGACCGCGACCG
55690673 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:55692879 original size:18 final size:18
Alignment explanation
Indices: 55692858--55692959 Score: 71
Period size: 18 Copynumber: 5.3 Consensus size: 18
55692848 TATTTTGTTC
55692858 ATTATTTTTAATATTATT
1 ATTATTTTTAATATTATT
*
55692876 ATTATTTTCT-TTATTATT
1 ATTATTTT-TAATATTATT
* *
55692894 ATTATATTTACTATTATT
1 ATTATTTTTAATATTATT
* * *
55692912 ATCATCTTTACTATTGCTATT
1 ATTATTTTTAATA-T--TATT
55692933 AGTATATTTATTAATATTATT
1 A-T-TATTT-TTAATATTATT
*
55692954 GTTATT
1 ATTATT
55692960 ATTGTTATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
17 1 0.01
18 40 0.60
19 6 0.09
20 1 0.01
21 9 0.13
22 1 0.01
23 4 0.06
24 5 0.07
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTATTTTTAATATTATT
Found at i:55692889 original size:15 final size:15
Alignment explanation
Indices: 55692858--55692913 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
55692848 TATTTTGTTC
*
55692858 ATTATTTTTA-ATATT
1 ATTATTATTATAT-TT
* *
55692873 ATTATTATTTTCTTT
1 ATTATTATTATATTT
55692888 ATTATTATTATATTT
1 ATTATTATTATATTT
*
55692903 ACTATTATTAT
1 ATTATTATTAT
55692914 CATCTTTACT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 33 0.97
16 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTATTATTATATTT
Found at i:55693153 original size:34 final size:34
Alignment explanation
Indices: 55693114--55693180 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
55693104 TCTACATATA
* * *
55693114 TATTTTTTATTTAAATATGTATATTATATATTAT
1 TATTTTATATCTAAATATATATATTATATATTAT
* * *
55693148 TATTTTATATCTATATATATATTTTTTATATTA
1 TATTTTATATCTAAATATATATATTATATATTA
55693181 AAATATGTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (34 bp):
TATTTTATATCTAAATATATATATTATATATTAT
Found at i:55693162 original size:21 final size:20
Alignment explanation
Indices: 55693133--55693180 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
55693123 TTTAAATATG
55693133 TATATTATATAT-TATTATTT
1 TATATTATATATATATT-TTT
55693153 TATATCTATATATATATTTTT
1 TATAT-TATATATATATTTTT
55693174 TATATTA
1 TATATTA
55693181 AAATATGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.27
21 15 0.58
22 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TATATTATATATATATTTTT
Found at i:55693170 original size:19 final size:19
Alignment explanation
Indices: 55693101--55693172 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 19
55693091 TTTTATATAC
*
55693101 ATATCTACATATATATTTT
1 ATATCTATATATATATTTT
* * * * *
55693120 TTATTTAAATATGTATATT
1 ATATCTATATATATATTTT
55693139 ATA--TAT-TAT-TATTTT
1 ATATCTATATATATATTTT
55693154 ATATCTATATATATATTTT
1 ATATCTATATATATATTTT
55693173 TTATATTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
15 8 0.20
16 3 0.07
17 5 0.12
18 3 0.07
19 22 0.54
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (19 bp):
ATATCTATATATATATTTT
Found at i:55693186 original size:19 final size:22
Alignment explanation
Indices: 55693133--55693186 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 22
55693123 TTTAAATATG
*
55693133 TATAT-TATATAT-TATTATTT
1 TATATCTATAAATATATTATTT
*
55693153 TATATCTATATATATATT-TTT
1 TATATCTATAAATATATTATTT
55693174 TATAT-TA-AAATAT
1 TATATCTATAAATAT
55693187 GTATATTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 5 0.16
20 7 0.23
21 15 0.48
22 4 0.13
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TATATCTATAAATATATTATTT
Found at i:55693186 original size:21 final size:21
Alignment explanation
Indices: 55693139--55693201 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
55693129 TATGTATATT
*
55693139 ATATATTATTATTTTATATCT-AT
1 ATATA-TATT-TTTTATAT-TAAA
55693162 ATATATATTTTTTATATTAAA
1 ATATATATTTTTTATATTAAA
* * *
55693183 ATATGTATATTATATATTA
1 ATATATATTTTTTATATTA
55693202 TCTTATGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 25 0.71
22 4 0.11
23 5 0.14
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
ATATATATTTTTTATATTAAA
Found at i:55693470 original size:19 final size:19
Alignment explanation
Indices: 55693448--55693485 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
55693438 TTATCTTTTC
*
55693448 TTATTTCAT-TTGTATTATT
1 TTATTT-ATGTTGCATTATT
55693467 TTATTTATGTTGCATTATT
1 TTATTTATGTTGCATTATT
55693486 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.66
Consensus pattern (19 bp):
TTATTTATGTTGCATTATT
Found at i:55713853 original size:29 final size:30
Alignment explanation
Indices: 55713821--55713886 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 30
55713811 ATTTAGGACC
* * *
55713821 AAATTTAGCTC-AAGAAAAGAATAAGGGTT
1 AAATTTAACTCAAAAAAAAGAATAAGGGCT
55713850 AAATTTAACTCAAAAAAAAAAGAATAAGGGCT
1 AAATTTAACTC--AAAAAAAAGAATAAGGGCT
55713882 AAATT
1 AAATT
55713887 GATAAAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 10 0.32
32 21 0.68
ACGTcount: A:0.55, C:0.08, G:0.15, T:0.23
Consensus pattern (30 bp):
AAATTTAACTCAAAAAAAAGAATAAGGGCT
Found at i:55713964 original size:28 final size:29
Alignment explanation
Indices: 55713910--55713968 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
55713900 TATACATAAA
*
55713910 TACTAAGGGCTAATTTTTTTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
55713939 TACTAAGGGCTAA-TTTTGTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
55713967 TA
1 TA
55713969 ATGAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (29 bp):
TACTAAGGGCTAATTTTTGTTATTATGCC
Found at i:55714391 original size:17 final size:17
Alignment explanation
Indices: 55714371--55714403 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
55714361 ATTTAATATA
55714371 TATATTTGATTAAAAAG
1 TATATTTGATTAAAAAG
55714388 TATATTTGATTAAAAA
1 TATATTTGATTAAAAA
55714404 TAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
TATATTTGATTAAAAAG
Found at i:55734938 original size:19 final size:19
Alignment explanation
Indices: 55734914--55734950 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
55734904 TTATTCTAAA
55734914 ATTTATCTACCTAAATAAG
1 ATTTATCTACCTAAATAAG
55734933 ATTTATCTACCTAAATAA
1 ATTTATCTACCTAAATAA
55734951 CTTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTTATCTACCTAAATAAG
Found at i:55737341 original size:20 final size:20
Alignment explanation
Indices: 55737316--55737365 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
55737306 TGGCTTAAAA
55737316 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
55737336 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
55737353 GTGGTAGTGGATT
1 TTGGTAGTGGATT
55737366 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:55741980 original size:20 final size:20
Alignment explanation
Indices: 55741955--55742004 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
55741945 TGGCTTAAAA
55741955 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
55741975 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
55741992 GTGGTAGTGGATT
1 TTGGTAGTGGATT
55742005 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:55743133 original size:72 final size:72
Alignment explanation
Indices: 55743023--55743228 Score: 295
Period size: 72 Copynumber: 2.9 Consensus size: 72
55743013 TAATCAGAGT
* * * *
55743023 TCCAACAACTCGTCCTTAGAAGTAATAAATATTAATATTTTAAATAGATATAGCCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
55743088 AATGAGG
66 AATGAGG
* ** *
55743095 TCCAACAACTTGTGGTTGGAAGTAATAAATATTAATATTTAAAATAAATGTAGCCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
* * *
55743160 ATTTATG
66 AATGAGG
* *
55743167 TCCAACAACTAGTCCTTGGATGTAATAAATATTAATATTTTAAATAAACGTAGCCAAAATAA
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAA
55743229 AATCCAACAA
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 118 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (72 bp):
TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
AATGAGG
Found at i:55743972 original size:20 final size:20
Alignment explanation
Indices: 55743935--55743974 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
55743925 TTGTTTTCCG
**
55743935 TATTATATAATTTTAATTAA
1 TATTATATAATTAAAATTAA
*
55743955 TATTTTATAATTAAAATTAA
1 TATTATATAATTAAAATTAA
55743975 AAATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATATAATTAAAATTAA
Found at i:55744098 original size:40 final size:40
Alignment explanation
Indices: 55744054--55744135 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
55744044 AAATCTATTT
* * *
55744054 ATAACAACTTAATTTTTTATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
55744094 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
55744134 AT
1 AT
55744136 CTTATAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:55750357 original size:18 final size:18
Alignment explanation
Indices: 55750331--55750376 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
55750321 CAGAAACATG
*
55750331 TACAGATGTAAATACGGA
1 TACAGATGTAAATACAGA
* *
55750349 TACAAATGTAAATATAGA
1 TACAGATGTAAATACAGA
55750367 TACAGATGTA
1 TACAGATGTA
55750377 TTTATCCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (18 bp):
TACAGATGTAAATACAGA
Found at i:55752382 original size:18 final size:18
Alignment explanation
Indices: 55752354--55752397 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
55752344 AACCTATTAT
55752354 AATTGTTTTTTGA-ATTTTG
1 AATT-TTTTTT-ATATTTTG
*
55752373 AATTTTTTTTATTTTTTG
1 AATTTTTTTTATATTTTG
55752391 AATTTTT
1 AATTTTT
55752398 AAATTAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.70
Consensus pattern (18 bp):
AATTTTTTTTATATTTTG
Found at i:55754290 original size:17 final size:17
Alignment explanation
Indices: 55754268--55754301 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55754258 ATCCACTAAT
*
55754268 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
55754285 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
55754302 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:55758928 original size:17 final size:17
Alignment explanation
Indices: 55758906--55758939 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55758896 ATCCACTAAT
*
55758906 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
55758923 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
55758940 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:55764345 original size:73 final size:73
Alignment explanation
Indices: 55764218--55764375 Score: 298
Period size: 73 Copynumber: 2.2 Consensus size: 73
55764208 AAATCACAAT
*
55764218 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTGTAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
55764283 CATATGAA
66 CATATGAA
*
55764291 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTTAAGTATAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
55764356 CATATGAA
66 CATATGAA
55764364 TTCATAAGGAAT
1 TTCATAAGGAAT
55764376 TTAGGGTTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 83 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (73 bp):
TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
CATATGAA
Found at i:55767757 original size:21 final size:21
Alignment explanation
Indices: 55767731--55767771 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
55767721 ATCTGCTCAA
* *
55767731 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
55767752 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
55767772 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:55775207 original size:43 final size:42
Alignment explanation
Indices: 55775140--55775269 Score: 174
Period size: 43 Copynumber: 3.0 Consensus size: 42
55775130 CATAGGATTT
55775140 TCGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCA
**
55775183 TCGACT-TGTGTTTACGTGTAAGACC-CTGTCTGGGACAATGGCA
1 TCGA-TATGTG-TTACGTGTAAGACCAC-GTCTGGGACGTTGGCA
*
55775226 TCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCA
55775269 T
1 T
55775270 TGTACGAGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 69 0.91
44 5 0.07
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:55781492 original size:33 final size:33
Alignment explanation
Indices: 55781454--55781522 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
55781444 AAATATATTG
* *
55781454 ATATTTGTAATAGTTATTTGAAAT-ATTTCACAT
1 ATATTTGAAATAATTATTTGAAATAATTT-ACAT
*
55781487 ATATTTGAAATAATTTTTTGAAATAATTTACAT
1 ATATTTGAAATAATTATTTGAAATAATTTACAT
55781520 ATA
1 ATA
55781523 AAATCAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (33 bp):
ATATTTGAAATAATTATTTGAAATAATTTACAT
Found at i:55781508 original size:13 final size:13
Alignment explanation
Indices: 55781490--55781515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55781480 TTCACATATA
55781490 TTTGAAATAATTT
1 TTTGAAATAATTT
55781503 TTTGAAATAATTT
1 TTTGAAATAATTT
55781516 ACATATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTGAAATAATTT
Found at i:55782021 original size:206 final size:198
Alignment explanation
Indices: 55781709--55782230 Score: 621
Period size: 206 Copynumber: 2.6 Consensus size: 198
55781699 ACAATGCATA
*
55781709 TAAAAAAATATTTGATGTATAAAAATTATATATATAGAAAAATATA--AAAAAATTAGTTGATGT
1 TAAAAAAATATTTGA--TATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATG-
* * * * *
55781772 TTTTTAAAAAATAAAAAATAAATAACACAATGATACTTATGAATATATTTTCACTATATCCACAA
63 TTTTTAAAAAATAAATAAT-ATTAACATAATGATACATATGAATATATTTTCA-TATATCAACAA
* * * * *
55781837 TGCAAGTGAAAAAAAATAATGATATTTGAAATAATTATTTTTATAATATTAAAATTTATGTTACC
126 TGCAAGTG--AAAAAATAAAGAGATTTGAAATAATTAATTTTAT-ATATTAAAATTTACGATACC
55781902 CACAATGTACG
188 CACAATGTACG
* * * *
55781913 TAAAAACATTTTTTTTATATAAAGAATTATTTATAAAGAAAAATATATCAAAAAATTAGTTGATG
1 TAAAAA-A-ATATTTGATATAAA-AATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATG
* * *
55781978 TTTTT-AAAAATACATATAATTTTAACATAATGATACATATGAATATATATTCATCATATCAATA
63 TTTTTAAAAAATA-A-ATAATATTAACATAATGATACATATGAATATATTTTCAT-ATATCAACA
* * *
55782042 ATGTAAGTGAAAAAATAAAGAGATTTGAAATAATTAATTTTATATGTTAGAATTTACGATACCCA
125 ATGCAAGTGAAAAAATAAAGAGATTTGAAATAATTAATTTTATATATTAAAATTTACGATACCCA
55782107 CAATGTACG
190 CAATGTACG
*
55782116 TAAAAAAATATTTGACATAAAAA--ATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTT
1 TAAAAAAATATTTGATATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTT
* *
55782179 TTAAAAAATAAA-ATATATTAACATAAT--TATATATAAAT-TATTTTCATTATAT
66 TTAAAAAATAAATA-ATATTAACATAATGATACATATGAATATATTTTCA-TATAT
55782231 AATTACATAT
Statistics
Matches: 277, Mismatches: 30, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
194 11 0.04
195 10 0.04
196 1 0.00
197 13 0.05
198 42 0.15
199 7 0.03
200 2 0.01
201 10 0.04
202 1 0.00
203 33 0.12
204 43 0.16
205 30 0.11
206 54 0.19
207 20 0.07
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.36
Consensus pattern (198 bp):
TAAAAAAATATTTGATATAAAAATTATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTT
TTAAAAAATAAATAATATTAACATAATGATACATATGAATATATTTTCATATATCAACAATGCAA
GTGAAAAAATAAAGAGATTTGAAATAATTAATTTTATATATTAAAATTTACGATACCCACAATGT
ACG
Found at i:55783900 original size:13 final size:13
Alignment explanation
Indices: 55783884--55783909 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55783874 CTTTGCATAT
55783884 TGTCTTCAACAGG
1 TGTCTTCAACAGG
55783897 TGTCTTCAACAGG
1 TGTCTTCAACAGG
55783910 CTCGCACTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTCTTCAACAGG
Found at i:55788121 original size:25 final size:24
Alignment explanation
Indices: 55788063--55788121 Score: 57
Period size: 25 Copynumber: 2.3 Consensus size: 24
55788053 CAGATGGCCA
**
55788063 AAAGTAAAAAAATCTAGATATTTTT
1 AAAG-AAAAAAATCTAGATATTCCT
55788088 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAG-AAAAAAATCTAGATAT--TCCT
55788115 AAA-AAAA
1 AAAGAAAA
55788122 GGCACCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 25 0.83
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAGAAAAAAATCTAGATATTCCT
Found at i:55788416 original size:17 final size:14
Alignment explanation
Indices: 55788392--55788439 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
55788382 TTTTTTGTTT
55788392 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
55788406 TGTTGTCTTCTTTGTT-C
1 T-TTG--TTCTTT-TTCC
55788423 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
55788437 TTT
1 TTT
55788440 TTTTGATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 3 0.10
16 3 0.10
17 8 0.28
18 2 0.07
ACGTcount: A:0.00, C:0.19, G:0.10, T:0.71
Consensus pattern (14 bp):
TTTGTTCTTTTTCC
Found at i:55788843 original size:17 final size:18
Alignment explanation
Indices: 55788813--55788858 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
55788803 ATTTAAATTG
55788813 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
55788831 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
55788847 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
55788859 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:55790670 original size:14 final size:14
Alignment explanation
Indices: 55790632--55790674 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
55790622 TAAAATGTAC
55790632 AATATAATTAAA-T
1 AATATAATTAAATT
55790645 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
55790660 AA-ATAATTTAATT
1 AATATAATTAAATT
55790673 AA
1 AA
55790675 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:55793157 original size:3 final size:3
Alignment explanation
Indices: 55793151--55793197 Score: 67
Period size: 3 Copynumber: 15.3 Consensus size: 3
55793141 TAAAAAAATT
**
55793151 TAA TAA TAA TAA TAA TAA TGG TAA TAAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
55793197 T
1 T
55793198 CATGATGATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:55798323 original size:17 final size:20
Alignment explanation
Indices: 55798282--55798326 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
55798272 TTTTTTTTTC
55798282 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAT
55798303 TATAAAATAC-ATA-AAAA-
1 TATAAAATACAATACAAAAT
55798320 TATAAAA
1 TATAAAA
55798327 ATATTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 3 0.12
21 10 0.42
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
TATAAAATACAATACAAAAT
Found at i:55800611 original size:17 final size:17
Alignment explanation
Indices: 55800589--55800622 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55800579 ATCCACTAAT
*
55800589 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
55800606 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
55800623 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:55805250 original size:17 final size:17
Alignment explanation
Indices: 55805228--55805261 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55805218 ATCCACTAAT
*
55805228 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
55805245 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
55805262 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:55808206 original size:27 final size:26
Alignment explanation
Indices: 55808159--55808215 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
55808149 AATATATTAT
* *
55808159 TTTTAATTAATTAAGCATGAAATATGA
1 TTTTAATAAATTAAGCATGAAA-ATCA
*
55808186 TTTTAATAAAATTAAG-TTGAAAATCA
1 TTTTAAT-AAATTAAGCATGAAAATCA
55808212 TTTT
1 TTTT
55808216 TCCATTGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.27
27 12 0.46
28 7 0.27
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
TTTTAATAAATTAAGCATGAAAATCA
Found at i:55812290 original size:21 final size:21
Alignment explanation
Indices: 55812264--55812304 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
55812254 ATCTGCTCAA
* *
55812264 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
55812285 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
55812305 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:55820288 original size:29 final size:29
Alignment explanation
Indices: 55820223--55820289 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
55820213 AAAGATTGGT
* *
55820223 GACCAAATTTAGCTCAAGAAAAGAATAAG
1 GACCAAATTTAACTCAAAAAAAGAATAAG
**
55820252 GATTAAATTTAACTCAAAAAAAGAATAAG
1 GACCAAATTTAACTCAAAAAAAGAATAAG
*
55820281 GGCCAAATT
1 GACCAAATT
55820290 GATAAAAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (29 bp):
GACCAAATTTAACTCAAAAAAAGAATAAG
Found at i:55821977 original size:21 final size:19
Alignment explanation
Indices: 55821953--55822000 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
55821943 AAAGTTTTTT
55821953 TTATAAAATACATATACAAAA
1 TTATAAAATAC--ATACAAAA
*
55821974 TTATAAAATGCATACAAAA
1 TTATAAAATACATACAAAA
*
55821993 ATATAAAA
1 TTATAAAA
55822001 ATATTTATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.27
Consensus pattern (19 bp):
TTATAAAATACATACAAAA
Found at i:55828534 original size:12 final size:12
Alignment explanation
Indices: 55828517--55828541 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55828507 CTTGAAATGC
55828517 CTTCTCTTCACT
1 CTTCTCTTCACT
55828529 CTTCTCTTCACT
1 CTTCTCTTCACT
55828541 C
1 C
55828542 CTTTCTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.44, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTTCACT
Found at i:55829921 original size:18 final size:18
Alignment explanation
Indices: 55829884--55829922 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
55829874 TCACCTTAGC
* * *
55829884 TTTATTTTGTTTTTGCGT
1 TTTATTTTCTTTATGAGT
55829902 TTTATTTTCTTTATGAGT
1 TTTATTTTCTTTATGAGT
55829920 TTT
1 TTT
55829923 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.13, T:0.72
Consensus pattern (18 bp):
TTTATTTTCTTTATGAGT
Found at i:55838584 original size:115 final size:114
Alignment explanation
Indices: 55838270--55838715 Score: 635
Period size: 114 Copynumber: 3.9 Consensus size: 114
55838260 AAAATAAGCA
* ** * * *
55838270 TTAGCAGCGTTTTCCAGAAAGCGCCGC-AAAAAAGCTAAGCCCAACGACGTCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
55838334 TCGGGGATTTAGCCGCTTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * *
55838383 TTAGCGGCGTTTTTGAGAAAGCACCACAAAAAAACCTAAGCCCAACCACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* ** *
55838448 TTGGGGATTTAGCGGCGTTTTT-AGAAAAGCGCCTTTAATGCTTAGGGCT
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCT
*
55838497 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAGAAAAACCTAAGCCCAACGACGCTGTTTTCTGAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAA-AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * * *
55838562 TTCGAGGATATAGCGGCATTTTTAAGAAAGCGCCGCTAATGCCCAGGGCT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
55838612 TTAGCGGCGTTTTTGAGAAAGCGCAGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
55838677 TCGGGGATTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAA
66 TCGGGGATTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAA
55838716 AGGTCTTGTT
Statistics
Matches: 293, Mismatches: 35, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
113 24 0.08
114 154 0.53
115 113 0.39
116 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:55843271 original size:75 final size:75
Alignment explanation
Indices: 55843156--55843370 Score: 358
Period size: 75 Copynumber: 2.9 Consensus size: 75
55843146 TGAATGGATC
*
55843156 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
1 TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
55843221 TAAATGGGTA
66 TAAATGGGTA
* *
55843231 TTTGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTTATAGTATTCCCTCTT
1 TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
55843296 TAAATGGGTA
66 TAAATGGGTA
* * * * *
55843306 TTCGGTTCCTCAAAATGAAGTAGATATTAGTCCAACAAGTACTAACTCTCATAGTATTCCTTCTT
1 TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
55843371 ATTCTGGTGA
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 130 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (75 bp):
TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
TAAATGGGTA
Found at i:55851621 original size:17 final size:17
Alignment explanation
Indices: 55851599--55851632 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55851589 ATCCACTAAT
*
55851599 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
55851616 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
55851633 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Done.