Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 26 of 185
Found at i:7206617 original size:23 final size:23
Alignment explanation
Indices: 7206591--7206676 Score: 68
Period size: 23 Copynumber: 3.6 Consensus size: 23
7206581 ATTCCAATTG
7206591 CTTAATAACTCAAAATAATTAAT
1 CTTAATAACTCAAAATAATTAAT
* *
7206614 CTTAATAACTC-TAATCTATTAAT
1 CTTAATAACTCAAAAT-AATTAAT
* *
7206637 ACATAAT-ACCCAACTTAATTAATTAAT
1 -CTTAATAACTCAA---AA-TAATTAAT
7206664 CTTAATAACTCAA
1 CTTAATAACTCAA
7206677 TCTATTACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
22 3 0.06
23 20 0.43
24 5 0.11
26 5 0.11
27 13 0.28
28 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (23 bp):
CTTAATAACTCAAAATAATTAAT
Found at i:7210969 original size:32 final size:35
Alignment explanation
Indices: 7210908--7210979 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 35
7210898 ATTTTATGAC
* *
7210908 TTTT-TAAATATTATTTAACAAAATTTTAAAGTGT
1 TTTTATAAATATTATTTAACAAAATATTAAAGTAT
*
7210942 TTTTATAAATATT-TTTAA-AAAA-ATTAAATTAT
1 TTTTATAAATATTATTTAACAAAATATTAAAGTAT
7210974 TTTTAT
1 TTTTAT
7210980 TATTTTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 13 0.38
33 4 0.12
34 9 0.26
35 8 0.24
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (35 bp):
TTTTATAAATATTATTTAACAAAATATTAAAGTAT
Found at i:7216282 original size:3 final size:3
Alignment explanation
Indices: 7216274--7216321 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7216264 TGTTAAAGCC
7216274 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7216322 GATTTGAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7216652 original size:26 final size:27
Alignment explanation
Indices: 7216608--7216658 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7216598 TTCTATCCCA
*
7216608 CTTCAATTTAAATAATTAAACATAATT
1 CTTCAATTAAAATAATTAAACATAATT
*
7216635 CTTCAA-TAAAATATTTAAACATAA
1 CTTCAATTAAAATAATTAAACATAA
7216659 AATATATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (27 bp):
CTTCAATTAAAATAATTAAACATAATT
Found at i:7225181 original size:50 final size:50
Alignment explanation
Indices: 7225057--7225305 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
7225047 GATAATAACA
* * ** * *
7225057 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7225108 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7225158 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7225208 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7225263 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7225306 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7225235 original size:100 final size:104
Alignment explanation
Indices: 7225056--7225305 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
7225046 TGATAATAAC
**
7225056 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7225121 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7225158 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7225221 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7225263 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7225306 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7225678 original size:30 final size:30
Alignment explanation
Indices: 7225643--7225700 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7225633 CCTCGACTCT
*
7225643 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7225673 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7225701 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7232480 original size:24 final size:25
Alignment explanation
Indices: 7232426--7232494 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
7232416 ATTGTTATTG
* * *
7232426 TATAAAAGTAAAATGAATTATTACAT
1 TATAAAATTAAAAT-ATTTATAACAT
7232452 T-TAAAATTAAAATATTTATAAC-T
1 TATAAAATTAAAATATTTATAACAT
7232475 TATAAAATTTAAAATTATTT
1 TATAAAA-TTAAAA-TATTT
7232495 GAATCCGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.05
24 12 0.32
25 17 0.46
26 6 0.16
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (25 bp):
TATAAAATTAAAATATTTATAACAT
Found at i:7232858 original size:22 final size:21
Alignment explanation
Indices: 7232832--7232872 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7232822 ATATTTAATC
*
7232832 TTTATGTATATTTAATAAAAAG
1 TTTATATAT-TTTAATAAAAAG
*
7232854 TTTATATATTTTTATAAAA
1 TTTATATATTTTAATAAAA
7232873 GAAAGACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTATATATTTTAATAAAAAG
Found at i:7233631 original size:30 final size:30
Alignment explanation
Indices: 7233596--7233660 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
7233586 GTCTAAACTC
*
7233596 AAAAAAATATTAATCTTATTTGCTCCAAAAT
1 AAAAAAA-AGTAATCTTATTTGCTCCAAAAT
* *
7233627 AAAAAAAAGTAGTCTTATTTGCTTCAAAAT
1 AAAAAAAAGTAATCTTATTTGCTCCAAAAT
7233657 AAAA
1 AAAA
7233661 CAATTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAAAAAAGTAATCTTATTTGCTCCAAAAT
Found at i:7234053 original size:11 final size:10
Alignment explanation
Indices: 7234035--7234073 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
7234025 AACTAAATAC
7234035 AATTTTATAT
1 AATTTTATAT
*
7234045 AATTTTTATAC
1 AA-TTTTATAT
7234056 AATTTTATAT
1 AATTTTATAT
*
7234066 AAATTTAT
1 AATTTTAT
7234074 TTCGAGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (10 bp):
AATTTTATAT
Found at i:7237248 original size:18 final size:18
Alignment explanation
Indices: 7237225--7237259 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7237215 AAAAGTTAAT
7237225 TAATATATATAAT-TAAAA
1 TAATAT-TATAATATAAAA
7237243 TAATATTATAATATAAA
1 TAATATTATAATATAAA
7237260 TTTATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATTATAATATAAAA
Found at i:7237929 original size:27 final size:27
Alignment explanation
Indices: 7237899--7237964 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
7237889 CCTACCTAGT
7237899 AGGCGCCAATGGAGGAGCCTCATGCAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
* *
7237926 AGGCGCCAATGAAGGAGCCTCATGGAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
7237953 AGGCGCCAATGG
1 AGGCGCCAATGG
7237965 TGTCCTCTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.38, T:0.11
Consensus pattern (27 bp):
AGGCGCCAATGGAGGAGCCTCATGCAG
Found at i:7238208 original size:22 final size:21
Alignment explanation
Indices: 7238173--7238247 Score: 95
Period size: 20 Copynumber: 3.7 Consensus size: 21
7238163 TAGATTAGAA
*
7238173 TTTTGTA-GAATATTTTAACTT
1 TTTTGTATGAATATTATAA-TT
7238194 TTTTGTATGAATATTATAATT
1 TTTTGTATGAATATTATAATT
*
7238215 TTTT-TATGAATATTGTAA--
1 TTTTGTATGAATATTATAATT
7238233 TTTTGTATGAATATT
1 TTTTGTATGAATATT
7238248 GCAATCTTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.08
19 10 0.20
20 13 0.26
21 13 0.26
22 10 0.20
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (21 bp):
TTTTGTATGAATATTATAATT
Found at i:7238222 original size:20 final size:20
Alignment explanation
Indices: 7238180--7238247 Score: 84
Period size: 19 Copynumber: 3.4 Consensus size: 20
7238170 GAATTTTGTA
*
7238180 GAATATTTTAACTTTTTTGTAT
1 GAATATTATAA-TTTTTT-TAT
7238202 GAATATTATAATTTTTTTAT
1 GAATATTATAATTTTTTTAT
* *
7238222 GAATATTGTAA-TTTTGTAT
1 GAATATTATAATTTTTTTAT
7238241 GAATATT
1 GAATATT
7238248 GCAATCTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.33
20 13 0.30
21 6 0.14
22 10 0.23
ACGTcount: A:0.32, C:0.01, G:0.10, T:0.56
Consensus pattern (20 bp):
GAATATTATAATTTTTTTAT
Found at i:7241217 original size:27 final size:27
Alignment explanation
Indices: 7241169--7241270 Score: 154
Period size: 27 Copynumber: 3.8 Consensus size: 27
7241159 AAATCACAGT
7241169 ATTGGCGCCTTCCA-ATATGGCACCACC
1 ATTGGCGCCTTCCAGATA-GGCACCACC
7241196 ATTGGCGCC-TCCTAGATAGGCACCACC
1 ATTGGCGCCTTCC-AGATAGGCACCACC
* *
7241223 ATTGGCGCCTCCCAAATAGGCACCACC
1 ATTGGCGCCTTCCAGATAGGCACCACC
7241250 ATTGGCGCCTTCCAGATAGGC
1 ATTGGCGCCTTCCAGATAGGC
7241271 GCTAATACTA
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 3 0.04
27 60 0.88
28 5 0.07
ACGTcount: A:0.23, C:0.36, G:0.22, T:0.20
Consensus pattern (27 bp):
ATTGGCGCCTTCCAGATAGGCACCACC
Found at i:7246522 original size:3 final size:3
Alignment explanation
Indices: 7246514--7246547 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7246504 GAATCACAAT
7246514 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7246548 ATTTTATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7246556 original size:7 final size:7
Alignment explanation
Indices: 7246539--7246569 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
7246529 TTATTATTAT
7246539 TATTATTA
1 TATT-TTA
7246547 TATTTTA
1 TATTTTA
7246554 TATTTTA
1 TATTTTA
7246561 TATTTTA
1 TATTTTA
7246568 TA
1 TA
7246570 GTGAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 19 0.83
8 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TATTTTA
Found at i:7246561 original size:14 final size:15
Alignment explanation
Indices: 7246521--7246569 Score: 64
Period size: 14 Copynumber: 3.1 Consensus size: 15
7246511 AATTTATTAT
7246521 TATTATTATTATTATTA
1 TATTATTA-TATT-TTA
7246538 TTATTATTATATTTTA
1 -TATTATTATATTTTA
7246554 TATT-TTATATTTTA
1 TATTATTATATTTTA
7246568 TA
1 TA
7246570 GTGAAAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 12 0.39
15 4 0.13
16 3 0.10
17 4 0.13
18 8 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTATTATATTTTA
Found at i:7249311 original size:26 final size:25
Alignment explanation
Indices: 7249258--7249326 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
7249248 AGCACTAATT
7249258 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAG-CTTTAATCG
*
7249284 GGAAGCTCACGAAGAGCTATATAA-CG
1 GGAAGCTCACAAAGAGCT-T-TAATCG
* *
7249310 GGATGCTCA-TAAGAGCT
1 GGAAGCTCACAAAGAGCT
7249327 GCGATGTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
25 9 0.24
26 26 0.68
27 3 0.08
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (25 bp):
GGAAGCTCACAAAGAGCTTTAATCG
Found at i:7265237 original size:24 final size:25
Alignment explanation
Indices: 7265184--7265239 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7265174 TCATAGATAA
**
7265184 ATAATTAAAAACAAAAATTTATGTT
1 ATAATTAAAAACAAAAATTTAAATT
7265209 ATAATTAAAAAC-AAAATTTAAAATT
1 ATAATTAAAAACAAAAATTT-AAATT
7265234 -TAATTA
1 ATAATTA
7265240 GTTATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAATTAAAAACAAAAATTTAAATT
Found at i:7269423 original size:21 final size:21
Alignment explanation
Indices: 7269399--7269500 Score: 84
Period size: 21 Copynumber: 4.9 Consensus size: 21
7269389 ACGAGCTTCT
*
7269399 GTTTAACTCATATGAGTTTTC
1 GTTTAACTCTTATGAGTTTTC
*
7269420 GTTTAGCT-TTATTGAGCTTTT-
1 GTTTAACTCTTA-TGAG-TTTTC
* * *
7269441 GTTTAACCCTTATGGGTTTCC
1 GTTTAACTCTTATGAGTTTTC
* *
7269462 GTTCAACTCTTATGAGCTTTC
1 GTTTAACTCTTATGAGTTTTC
* *
7269483 GTTCAAC-CCTATGAGTTT
1 GTTTAACTCTTATGAGTTT
7269501 CTGTTTAGCA
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
20 14 0.22
21 43 0.67
22 7 0.11
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (21 bp):
GTTTAACTCTTATGAGTTTTC
Found at i:7269437 original size:42 final size:40
Alignment explanation
Indices: 7269373--7269528 Score: 109
Period size: 42 Copynumber: 3.8 Consensus size: 40
7269363 TCATGTTTAC
* * *
7269373 TTTTCGTTTAGCGCTCACGAGCTTCTGTTTAACTCATATGAG
1 TTTTCGTTTAGC-TTTATGAGCTTCTGTTTAAC-CATATGAG
* * *
7269415 TTTTCGTTTAGCTTTATTGAGCTTTTGTTTAACCCTTATGGG
1 TTTTCGTTTAGCTTTA-TGAGCTTCTGTTTAA-CCATATGAG
* * * * *
7269457 TTTCCGTTCAACTCTTATGAGCTT-TCGTTCAACCCTATGAG
1 TTTTCGTTTAGCT-TTATGAGCTTCT-GTTTAACCATATGAG
* *
7269498 -TTTCTGTTTAGCACTTATGTGCTTCTGTTTA
1 TTTTC-GTTTAGC-TTTATGAGCTTCTGTTTA
7269529 GCCTTTGGGC
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
40 3 0.03
41 28 0.31
42 54 0.61
43 4 0.04
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (40 bp):
TTTTCGTTTAGCTTTATGAGCTTCTGTTTAACCATATGAG
Found at i:7269542 original size:19 final size:21
Alignment explanation
Indices: 7269499--7269542 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7269489 CCCTATGAGT
*
7269499 TTCTGTTTAGCACTTATGTGC
1 TTCTGTTTAGCACTTATGGGC
7269520 TTCTGTTTAGC-CTT-TGGGC
1 TTCTGTTTAGCACTTATGGGC
7269539 TTCT
1 TTCT
7269543 AGAAATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 11 0.50
ACGTcount: A:0.09, C:0.20, G:0.20, T:0.50
Consensus pattern (21 bp):
TTCTGTTTAGCACTTATGGGC
Found at i:7281483 original size:28 final size:28
Alignment explanation
Indices: 7281443--7281496 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
7281433 TAGATTCAAC
7281443 TAATTATGTTAAATATATTTTATTTATA
1 TAATTATGTTAAATATATTTTATTTATA
*
7281471 TAATTATGTTAAATATATTTTTTTTA
1 TAATTATGTTAAATATATTTTATTTA
7281497 AATCAACTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (28 bp):
TAATTATGTTAAATATATTTTATTTATA
Found at i:7281629 original size:19 final size:18
Alignment explanation
Indices: 7281597--7281648 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
7281587 AATTCTAATA
7281597 TTATAAA-ATCAATTAATTAT
1 TTATAAATAT-AATT-ATT-T
7281617 TT-TAAATATAATTATTT
1 TTATAAATATAATTATTT
7281634 TTAATAAATATAATT
1 TT-ATAAATATAATT
7281649 TTTATATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.10
18 3 0.10
19 19 0.66
20 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TTATAAATATAATTATTT
Found at i:7281630 original size:15 final size:15
Alignment explanation
Indices: 7281610--7281639 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7281600 TAAAATCAAT
7281610 TAATTATTTTAAATA
1 TAATTATTTTAAATA
*
7281625 TAATTATTTTTAATA
1 TAATTATTTTAAATA
7281640 AATATAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATTATTTTAAATA
Found at i:7281789 original size:32 final size:32
Alignment explanation
Indices: 7281722--7281824 Score: 122
Period size: 32 Copynumber: 3.2 Consensus size: 32
7281712 ATCAAATAAT
* * *
7281722 TATTTCAAGTATCATTATTTTTTTATATTTAAAA
1 TATTTCAAATATCATTA--TTTTTATATGTGAAA
*
7281756 TATTTAAAATATCATTATTTTTATATGTGAAA
1 TATTTCAAATATCATTATTTTTATATGTGAAA
*
7281788 TATTTCAAATATCATTA--TGT-TATGTGAAA
1 TATTTCAAATATCATTATTTTTATATGTGAAA
7281817 TATTTCAA
1 TATTTCAA
7281825 TTAATTATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
29 17 0.27
30 2 0.03
32 29 0.46
34 15 0.24
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (32 bp):
TATTTCAAATATCATTATTTTTATATGTGAAA
Found at i:7284982 original size:37 final size:37
Alignment explanation
Indices: 7284940--7285014 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
7284930 ACTTTATTTT
*
7284940 AAAAAAAAAGAAAAAAAAGGA-AAAAAGAAAAAAAAAG
1 AAAAAAAAA-AAAAAAAAGAAGAAAAAGAAAAAAAAAG
* * *
7284977 AAAAAAGAAAAAAAGAAGAAGAAAAAGAAAAGAAAAG
1 AAAAAAAAAAAAAAAAAGAAGAAAAAGAAAAAAAAAG
7285014 A
1 A
7285015 GAAAGGAGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 9 0.27
37 24 0.73
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (37 bp):
AAAAAAAAAAAAAAAAAGAAGAAAAAGAAAAAAAAAG
Found at i:7285008 original size:25 final size:23
Alignment explanation
Indices: 7284940--7285012 Score: 78
Period size: 25 Copynumber: 3.1 Consensus size: 23
7284930 ACTTTATTTT
* *
7284940 AAAAA-AAAAGAAAA-AAAAGGA
1 AAAAAGAAAAAAAAAGAAAAGAA
7284961 AAAAAGAAAAAAAAAGAAAAAAGAA
1 AAAAAGAAAAAAAAAG--AAAAGAA
7284986 AAAAAGAAGAAGAAAAAGAAAAGAA
1 AAAAAGAA-AA-AAAAAGAAAAGAA
7285011 AA
1 AA
7285013 GAGAAAGGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 5 0.11
22 8 0.18
25 23 0.52
26 2 0.05
27 6 0.14
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (23 bp):
AAAAAGAAAAAAAAAGAAAAGAA
Found at i:7285017 original size:18 final size:18
Alignment explanation
Indices: 7284944--7285018 Score: 100
Period size: 17 Copynumber: 4.2 Consensus size: 18
7284934 TATTTTAAAA
*
7284944 AAAAAGAAAAAAAAGGA-
1 AAAAAGAAAAAAAAAGAG
7284961 AAAAAGAAAAAAAAAGA-
1 AAAAAGAAAAAAAAAGAG
7284978 AAAAAGAAAAAAAGAAGAAG
1 AAAAAGAAAAAAA-AAG-AG
*
7284998 AAAAAGAAAAGAAAAGAG
1 AAAAAGAAAAAAAAAGAG
7285016 AAA
1 AAA
7285019 GGAGAGGCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
17 29 0.55
18 8 0.15
19 4 0.08
20 12 0.23
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAGAG
Found at i:7285019 original size:6 final size:5
Alignment explanation
Indices: 7284940--7285019 Score: 60
Period size: 5 Copynumber: 16.0 Consensus size: 5
7284930 ACTTTATTTT
* * * *
7284940 AAAAA AAAAG AAAA- AAAAG -GAA- AAAAG AAAAA AAAAG AAAA- AAGAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG
7284987 AAAAG AAGAAG AAAAAG AAAAG AAAAG AGAAAG
1 AAAAG AA-AAG -AAAAG AAAAG AAAAG A-AAAG
7285020 GAGAGGCCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 15
0.74 0.07 0.18
Matches are distributed among these distances:
4 10 0.16
5 37 0.61
6 12 0.20
7 2 0.03
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7285971 original size:44 final size:44
Alignment explanation
Indices: 7285903--7286747 Score: 425
Period size: 44 Copynumber: 18.7 Consensus size: 44
7285893 TGGCGAATCT
* *
7285903 TCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
7285947 TCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAG-TAACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * **
7285991 TTTCCCTGAAGTTGAAGTTGAAGTAG-AGTAGGTTGAAGATACAAGTCTTA
1 TCTCCCTGAAGTTGCAG-TG--G-AGCAG-A--TTAAAGCTACAAACCTTA
** * * **
7286041 TCTCCCTGAAGTTGCAGTGGAATATATTAAAGCTAACATATTTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * *
7286086 TCTCTCTGAAGTTGTAGTAGAGCAGATCATA--T-CAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
7286127 TCTCCCTAAAGTTGCAGTGGAGCAGATTGAACCTACTAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAACCTTA
* * ** * * * *
7286171 TCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACGATGAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAACCTTA
* * *
7286215 TAC-CTCTGAAGTTGCAGTAGG-TC-GAATTAAATCTACCATAACAAGTCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAG-ATTAAAGCTA-CA-AAC----CTTA
* * * *
7286265 TCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAACCAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * * *
7286310 TCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * * * *
7286354 TCTCTCTGAAGTTGCAATGTAGCAGATTGAAGCTACTAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
7286398 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ATGATGAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-A-CAAACCTTA
* * * * *
7286442 TAC-CTCTGAAGTTGCAATAGG-TCGGATTAAATCTACCATAACAAGTCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA-AAC----CTTA
* *
7286492 TCTCTCTGAAGTTGCAGTGGAGCA-ATTAAAGCTGCAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * * *
7286535 TCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * *
7286579 TCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAACCTTA
** * * * *
7286623 TCTCCCTGAAGTTGTTGTGGAGCGGATTAAA-ATGATGAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-A-CAAACCTTA
* * *
7286667 TAC-CTCTGAAGTTGCAGTAGG-TCAGATTAAATCTATCATAACAAGTCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA-AAC----CTTA
*
7286717 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
7286748 ACCATAAATC
Statistics
Matches: 615, Mismatches: 129, Indels: 108
0.72 0.15 0.13
Matches are distributed among these distances:
41 30 0.05
43 32 0.05
44 324 0.53
45 91 0.15
46 2 0.00
47 8 0.01
48 4 0.01
49 25 0.04
50 96 0.16
51 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
Found at i:7286028 original size:50 final size:50
Alignment explanation
Indices: 7285953--7286054 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 50
7285943 CTTATCTCTC
* *
7285953 TGAAGTTGCAGTAGAGCAGGTTGAAG-TAACAAACCTTATTTCCCTGAAGT
1 TGAAGTTGAAGTAGAGCAGGTTGAAGAT-ACAAACCTTATCTCCCTGAAGT
* **
7286003 TGAAGTTGAAGTAGAGTAGGTTGAAGATACAAGTCTTATCTCCCTGAAGT
1 TGAAGTTGAAGTAGAGCAGGTTGAAGATACAAACCTTATCTCCCTGAAGT
7286053 TG
1 TG
7286055 CAGTGGAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (50 bp):
TGAAGTTGAAGTAGAGCAGGTTGAAGATACAAACCTTATCTCCCTGAAGT
Found at i:7286622 original size:181 final size:182
Alignment explanation
Indices: 7286306--7286636 Score: 436
Period size: 181 Copynumber: 1.8 Consensus size: 182
7286296 GATAACCAAC
* * * * *
7286306 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCTCTGAAGTTGCAA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* * * *
7286371 TGTAGCAGATTGAAGCTACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGA
66 TGGAGCAGATTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGATGA
*
7286436 ATCCTATAC-CTCTGAAGTTGCAATAGGTCGGATTAAATCTACCATAACAAGT
131 ATCCTAT-CTCCCTGAAGTTGCAATAGGTCGGATTAAATCTACCATAACAAGT
* * * * *
7286488 CTTATCTCTCTGAAGTTGCAGTGGAGCA-ATTAAAGCTGCAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* * **
7286552 TGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACT
66 TGGAGCAGATTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATGA-T
7286616 -AATCCTATCTCCCTGAAGTTG
129 GAATCCTATCTCCCTGAAGTTG
7286637 TTGTGGAGCG
Statistics
Matches: 127, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
180 1 0.01
181 96 0.76
182 30 0.24
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (182 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
TGGAGCAGATTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATGATGA
ATCCTATCTCCCTGAAGTTGCAATAGGTCGGATTAAATCTACCATAACAAGT
Found at i:7286645 original size:225 final size:227
Alignment explanation
Indices: 7286031--7286747 Score: 1041
Period size: 225 Copynumber: 3.2 Consensus size: 227
7286021 GGTTGAAGAT
** * * ** *
7286031 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATATATTAAAGCTAACATATTTTATCTCTCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
* * * * * * * * *
7286096 GTTGTAGTAGAGCA-GAT-CATAT-CAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAA
* * * * *
7286158 CCTACTAATCCTATCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACGATGAATCCTATACCTCTG
131 GCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
*
7286223 AAGTTGCAGTAGGTCGAATTAAATCTACCATA
196 AAGTTGCAGTAGGTCGGATTAAATCTACCATA
* * * * *
7286255 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAACCAACCTTATCTCCCTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
* *
7286320 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT-CTCTGAAGTTGCAATGTAGCAGATTGA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGA
*
7286384 AGCTACTAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATACCTCT
130 AGCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATACCTCT
*
7286449 GAAGTTGCAATAGGTCGGATTAAATCTACCATA
195 GAAGTTGCAGTAGGTCGGATTAAATCTACCATA
* *
7286482 ACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-ATTAAAGCT-GCAAACCTTATCTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
7286545 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAA
**
7286610 GCTACTAATCCTATCTCCCTGAAGTTGTTGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
131 GCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
* *
7286675 AAGTTGCAGTAGGTCAGATTAAATCTATCATA
196 AAGTTGCAGTAGGTCGGATTAAATCTACCATA
*
7286707 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
7286748 ACCATAAATC
Statistics
Matches: 439, Mismatches: 48, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
224 65 0.15
225 203 0.46
226 18 0.04
227 153 0.35
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (227 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAA
GCTACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
AAGTTGCAGTAGGTCGGATTAAATCTACCATA
Found at i:7290780 original size:24 final size:24
Alignment explanation
Indices: 7290753--7290804 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7290743 TTAGTAAGTC
*
7290753 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7290777 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7290801 AAAT
1 AAAT
7290805 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7292750 original size:24 final size:24
Alignment explanation
Indices: 7292723--7292774 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7292713 TTAGTAAGTC
*
7292723 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7292747 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7292771 AAAT
1 AAAT
7292775 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7293102 original size:23 final size:23
Alignment explanation
Indices: 7293076--7293119 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7293066 TGAATTATTT
*
7293076 TTACTATTTTA-AATATAAAATAC
1 TTACT-TTTTATAATAAAAAATAC
7293099 TTACTTTTTATAATAAAAAAT
1 TTACTTTTTATAATAAAAAAT
7293120 TAAAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (23 bp):
TTACTTTTTATAATAAAAAATAC
Found at i:7294979 original size:216 final size:216
Alignment explanation
Indices: 7294605--7295041 Score: 847
Period size: 216 Copynumber: 2.0 Consensus size: 216
7294595 AAAGTTCTCC
7294605 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
1 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
* *
7294670 GTGTACTTCAAGAAAAATTAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
66 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
*
7294735 TGGTAATAATGACATTGAGCTGATATGGCTTATGGTATACCATTTAAGGAATAAGAAAGATCAAT
131 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
7294800 GTATGTCCCTGGTGGAATAAA
196 GTATGTCCCTGGTGGAATAAA
7294821 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
1 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
7294886 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
66 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
7294951 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
131 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
7295016 GTATGTCCCTGGTGGAATAAA
196 GTATGTCCCTGGTGGAATAAA
7295037 AATTT
1 AATTT
7295042 TAAGTTACCT
Statistics
Matches: 218, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
216 218 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (216 bp):
AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
GTATGTCCCTGGTGGAATAAA
Found at i:7301328 original size:22 final size:23
Alignment explanation
Indices: 7301272--7301328 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
7301262 TGATTATATA
7301272 AAAAATTA-ATAAATAAAAGTAT
1 AAAAATTATATAAATAAAAGTAT
* **
7301294 AAAAAGTAT-TAAATATTAG-AT
1 AAAAATTATATAAATAAAAGTAT
7301315 AAAAATTATATAAA
1 AAAAATTATATAAA
7301329 AATATTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (23 bp):
AAAAATTATATAAATAAAAGTAT
Found at i:7304486 original size:16 final size:16
Alignment explanation
Indices: 7304465--7304495 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7304455 TGACTTGTAA
7304465 ATATTATTAATATTTG
1 ATATTATTAATATTTG
7304481 ATATTATTAATATTT
1 ATATTATTAATATTT
7304496 ACGAACTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATATTATTAATATTTG
Found at i:7306066 original size:4 final size:4
Alignment explanation
Indices: 7306045--7306101 Score: 84
Period size: 4 Copynumber: 15.0 Consensus size: 4
7306035 TTCGAACTTC
*
7306045 AATT ATTT AATT --TT AATT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT
7306091 AATT AA-T AATT
1 AATT AATT AATT
7306102 CTCAAGTCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 3 0.06
4 43 0.90
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
AATT
Found at i:7308883 original size:21 final size:21
Alignment explanation
Indices: 7308842--7308883 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7308832 ATTAACTTTT
* *
7308842 TATTTTTTTAGAATTTTTTTA
1 TATTTTTTAAGAATTTATTTA
*
7308863 TATTTTTTAATAATTTATTTA
1 TATTTTTTAAGAATTTATTTA
7308884 ATCAAACCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (21 bp):
TATTTTTTAAGAATTTATTTA
Found at i:7310036 original size:20 final size:22
Alignment explanation
Indices: 7309987--7310065 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 22
7309977 TAAAGTTGGG
7309987 TGACTAAAATGAATGTATGTAA
1 TGACTAAAATGAATGTATGTAA
*
7310009 TGAC--AAATTAATG-ATG-AA
1 TGACTAAAATGAATGTATGTAA
*
7310027 TGACTAAAATGATAAATGTAACTGTAG
1 TGACTAAAATG---AATGT-A-TGTAA
7310054 TGACTAAAATGA
1 TGACTAAAATGA
7310066 TAAAAGTATG
Statistics
Matches: 45, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
18 6 0.13
19 3 0.07
20 12 0.27
22 4 0.09
23 4 0.09
24 1 0.02
25 1 0.02
26 2 0.04
27 12 0.27
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (22 bp):
TGACTAAAATGAATGTATGTAA
Found at i:7310037 original size:27 final size:27
Alignment explanation
Indices: 7310007--7310065 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
7309997 GAATGTATGT
7310007 AATGACAAAT-TAA-TGATGAATGACTAA
1 AATGACAAATGTAACTG-T-AATGACTAA
* *
7310034 AATGATAAATGTAACTGTAGTGACTAA
1 AATGACAAATGTAACTGTAATGACTAA
7310061 AATGA
1 AATGA
7310066 TAAAAGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 22 0.79
28 4 0.14
29 2 0.07
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (27 bp):
AATGACAAATGTAACTGTAATGACTAA
Found at i:7311759 original size:16 final size:17
Alignment explanation
Indices: 7311731--7311768 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
7311721 AAAATAAACA
7311731 TTTAAATATTTTTAATT
1 TTTAAATATTTTTAATT
*
7311748 TTTAAA-ATTTTTATTT
1 TTTAAATATTTTTAATT
7311764 TTTAA
1 TTTAA
7311769 GAATAAAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTAAATATTTTTAATT
Found at i:7319363 original size:17 final size:18
Alignment explanation
Indices: 7319325--7319363 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7319315 GATATTTGGT
* *
7319325 TTATAATAAGATAATGTT
1 TTATAATAAGATAATATC
7319343 TTATAATAA-ATAATATC
1 TTATAATAAGATAATATC
7319360 TTAT
1 TTAT
7319364 CTAGACTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATAATAAGATAATATC
Found at i:7320678 original size:42 final size:42
Alignment explanation
Indices: 7320600--7320679 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
7320590 TGTTTGTTGC
* ** *
7320600 TTGGTTTAAGGTTGTTGATGTAGGAGGCTTAGTGGTTGCTAG
1 TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTGCTAG
* * *
7320642 TTGGTTTGAGGTGGTTGTTGTAGGATGCACAATGGTTG
1 TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTG
7320680 GTGCCAAGTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.16, C:0.05, G:0.39, T:0.40
Consensus pattern (42 bp):
TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTGCTAG
Found at i:7322808 original size:20 final size:21
Alignment explanation
Indices: 7322785--7322830 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
7322775 TTTTTTTTTA
*
7322785 ATTTTTATGAA-CTTTTATAT
1 ATTTTTATGAATATTTTATAT
7322805 ATTTTT-TGAATATTTTATAT
1 ATTTTTATGAATATTTTATAT
7322825 -TTTTTA
1 ATTTTTA
7322831 AATGATGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (21 bp):
ATTTTTATGAATATTTTATAT
Found at i:7322825 original size:18 final size:18
Alignment explanation
Indices: 7322779--7322829 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
7322769 TCATTCTTTT
7322779 TTTTTA-ATTTTTATGAAC
1 TTTTTATATTTTT-TGAAC
7322797 TTTTATATATTTTTTGAA-
1 TTTT-TATATTTTTTGAAC
7322815 TATTTTATATTTTTT
1 T-TTTTATATTTTTT
7322830 AAATGATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 15 0.50
19 9 0.30
20 6 0.20
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (18 bp):
TTTTTATATTTTTTGAAC
Found at i:7325175 original size:98 final size:98
Alignment explanation
Indices: 7325054--7325248 Score: 318
Period size: 98 Copynumber: 2.0 Consensus size: 98
7325044 AAAAATCATA
* *
7325054 AAGGAAATTTTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
7325119 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAACGGATGTTCCTTTAAAGTG
* *
7325152 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
7325217 AAATCTTGGATAAATGGATTTTCCTTTAAAGT
66 AAATCTTGGATAAACGGATGTTCCTTTAAAGT
7325249 TTTTCATTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAACGGATGTTCCTTTAAAGTG
Found at i:7330795 original size:18 final size:18
Alignment explanation
Indices: 7330769--7330803 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7330759 TTATATATTC
7330769 TTTAGAATTTTTTAAAAT
1 TTTAGAATTTTTTAAAAT
*
7330787 TTTATAATTTTTTAAAA
1 TTTAGAATTTTTTAAAA
7330804 AATATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAGAATTTTTTAAAAT
Found at i:7330809 original size:17 final size:19
Alignment explanation
Indices: 7330774--7330815 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
7330764 TATTCTTTAG
**
7330774 AATTTTTTAAAATTTTAT-
1 AATTTTTTAAAATAATATA
7330792 AATTTTTTAAAA-AATATA
1 AATTTTTTAAAATAATATA
7330810 AATTTT
1 AATTTT
7330816 GATTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTTTAAAATAATATA
Found at i:7333064 original size:18 final size:17
Alignment explanation
Indices: 7333023--7333065 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
7333013 GAATATAGGG
*
7333023 ATCAAATTATGTTAAAA
1 ATCAAATTATATTAAAA
* *
7333040 ATTAAATATATATTAAAC
1 ATCAAAT-TATATTAAAA
7333058 ATCAAATT
1 ATCAAATT
7333066 TGAGCATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.37
Consensus pattern (17 bp):
ATCAAATTATATTAAAA
Found at i:7333246 original size:15 final size:14
Alignment explanation
Indices: 7333212--7333268 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 14
7333202 CAAATAACAT
7333212 AAATAA-AATTAGAA
1 AAATAATAATT-GAA
7333226 AAATAATAATTGAA
1 AAATAATAATTGAA
*
7333240 AATATAATATATTCAA
1 AA-ATAATA-ATTGAA
7333256 AAATAATAATTGA
1 AAATAATAATTGA
7333269 GAAAGAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
14 15 0.39
15 16 0.42
16 7 0.18
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (14 bp):
AAATAATAATTGAA
Found at i:7333260 original size:30 final size:29
Alignment explanation
Indices: 7333224--7333285 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
7333214 ATAAAATTAG
*
7333224 AAAAATAATAATTGAAAATATAATATATTC
1 AAAAATAATAATTGAAAA-AGAATATATTC
*
7333254 AAAAATAATAATTGAGAAAGAATATATTC
1 AAAAATAATAATTGAAAAAGAATATATTC
7333283 AAA
1 AAA
7333286 TAATTAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.29
Consensus pattern (29 bp):
AAAAATAATAATTGAAAAAGAATATATTC
Found at i:7333878 original size:40 final size:41
Alignment explanation
Indices: 7333756--7333892 Score: 161
Period size: 41 Copynumber: 3.4 Consensus size: 41
7333746 GGCGCTAACG
* * *
7333756 GAAAAACGCCGCAATAGGTAAAGTAATAGTGGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
* *
7333797 GAAAAACGCCGCAAAAGGTCAAA-CAGTAGCGGTGTTTATGA
1 GAAAAACGCCGCAAAAGGT-AAAGCAATAGCGGCGTTTATGA
* * *
7333838 GGAAAACGCCGTAAAAGGT-AAGCAATAGCGACGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
* *
7333878 GAAAAAAGCTGCAAA
1 GAAAAACGCCGCAAA
7333893 GTACTATTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 26 0.32
41 49 0.61
42 3 0.04
ACGTcount: A:0.42, C:0.15, G:0.26, T:0.18
Consensus pattern (41 bp):
GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
Found at i:7335538 original size:43 final size:43
Alignment explanation
Indices: 7335430--7335538 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 43
7335420 TCTGCTACAG
* * * *
7335430 TTAGTGTCG-TTTTCCCACAAACGCCGCTATAGAACATGACTT
1 TTAGTGGCGCTTTTCCCACAAACGCCGCTAAAAAACATGACTA
* * * * *
7335472 TTAGCGGCGCTTTTACTAAAAACGCCGCTAAAAAATATGA-TCA
1 TTAGTGGCGCTTTTCCCACAAACGCCGCTAAAAAACATGACT-A
7335515 TTAGTGGCGCTTTTCCCACAAACG
1 TTAGTGGCGCTTTTCCCACAAACG
7335539 TTGCTAAAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
42 8 0.15
43 44 0.85
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TTAGTGGCGCTTTTCCCACAAACGCCGCTAAAAAACATGACTA
Found at i:7335561 original size:86 final size:85
Alignment explanation
Indices: 7335430--7335589 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 85
7335420 TCTGCTACAG
* * *
7335430 TTAGTGTCGTTTTCCCACAAACGCCGCTATAGAACATGACTTTTAGCGGCGCTTT-TACTAAAAA
1 TTAGTGGCGTTTTCCCACAAACGCCGCTAAAGAACATGACTTTTAGCAGCG-TTTGTACTAAAAA
7335494 CGCCGCTAAAAAATATGATCA
65 CGCCGCTAAAAAATATGATCA
** * * *
7335515 TTAGTGGCGCTTTTCCCACAAACGTTGCTAAAGATCATG-TTCTTTAGCAGCGTTTGTAGTAAAA
1 TTAGTGGCG-TTTTCCCACAAACGCCGCTAAAGAACATGACT-TTTAGCAGCGTTTGTACTAAAA
*
7335579 GCGCCGCTAAA
64 ACGCCGCTAAA
7335590 GGTCATGTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 12 0.19
86 51 0.81
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (85 bp):
TTAGTGGCGTTTTCCCACAAACGCCGCTAAAGAACATGACTTTTAGCAGCGTTTGTACTAAAAAC
GCCGCTAAAAAATATGATCA
Found at i:7335693 original size:32 final size:32
Alignment explanation
Indices: 7335647--7335720 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
7335637 CATTTTTTTG
*
7335647 CGGCGCTTATCAAAACTTGCAAATTGTTTTAA
1 CGGCGCTTATCAAAACTTGCAAATTATTTTAA
*
7335679 CGGCACTTATCAAAACTTGCAAATTATTTTAA
1 CGGCGCTTATCAAAACTTGCAAATTATTTTAA
7335711 CGGCGCTTAT
1 CGGCGCTTAT
7335721 AAGCGCCGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (32 bp):
CGGCGCTTATCAAAACTTGCAAATTATTTTAA
Found at i:7337500 original size:41 final size:40
Alignment explanation
Indices: 7337437--7337574 Score: 124
Period size: 39 Copynumber: 3.5 Consensus size: 40
7337427 AACTTCGAGT
* * *
7337437 CGATGAGACACTGGATGTCAATTTACTACTTCGAATTAATT
1 CGATGAGACACTGGGTGCCAATTTA-TACTTCGAATTAATC
* *
7337478 CGATGAGGCACTGGGTGCCAA-TT-TACTTC-AGTTTAA-C
1 CGATGAGACACTGGGTGCCAATTTATACTTCGA-ATTAATC
* * * * *
7337515 CAATGAGACATTGTGTGTCAATTTATTCTTCGAATT-ATC
1 CGATGAGACACTGGGTGCCAATTTATACTTCGAATTAATC
*
7337554 CGATGAGGCACTGGGTGCCAA
1 CGATGAGACACTGGGTGCCAA
7337575 ACTGGTGTGT
Statistics
Matches: 75, Mismatches: 17, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
37 17 0.23
38 13 0.17
39 24 0.32
40 3 0.04
41 18 0.24
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTGGGTGCCAATTTATACTTCGAATTAATC
Found at i:7341964 original size:2 final size:2
Alignment explanation
Indices: 7341939--7341981 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
7341929 GTGAGAAAAA
* * * *
7341939 AT AT AA AT AT AA AT AT AC AT AT AT AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7341981 A
1 A
7341982 AAATGAGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:7341966 original size:16 final size:16
Alignment explanation
Indices: 7341945--7341983 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
7341935 AAAAATATAA
7341945 ATATAAATATACATAT
1 ATATAAATATACATAT
*
7341961 ATATAAATATATATAT
1 ATATAAATATACATAT
7341977 ATATAAA
1 ATATAAA
7341984 ATGAGTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAATATACATAT
Found at i:7342119 original size:3 final size:3
Alignment explanation
Indices: 7342111--7342175 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
7342101 AAGTGTAAAT
7342111 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7342159 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
7342176 GAACAAAAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7342862 original size:10 final size:10
Alignment explanation
Indices: 7342847--7342871 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7342837 TCCGAATTCA
7342847 AAAAAAAAAG
1 AAAAAAAAAG
7342857 AAAAAAAAAG
1 AAAAAAAAAG
7342867 AAAAA
1 AAAAA
7342872 GTTAGGGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:7343384 original size:13 final size:13
Alignment explanation
Indices: 7343358--7343390 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7343348 CTTGGGGTAG
*
7343358 TGGGT-TTAGGTT
1 TGGGTATTAGATT
7343370 TGGGTATTAGATT
1 TGGGTATTAGATT
7343383 TGGGTATT
1 TGGGTATT
7343391 TGGTTTGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (13 bp):
TGGGTATTAGATT
Found at i:7343397 original size:13 final size:13
Alignment explanation
Indices: 7343366--7343409 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
7343356 AGTGGGTTTA
*
7343366 GGTTTGGGTATTA
1 GGTTTGGGTATTT
*
7343379 GATTTGGGTATTT
1 GGTTTGGGTATTT
*
7343392 GGTTTGGGAATTT
1 GGTTTGGGTATTT
7343405 CGGTT
1 -GGTT
7343410 GCAAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.14, C:0.02, G:0.36, T:0.48
Consensus pattern (13 bp):
GGTTTGGGTATTT
Found at i:7343957 original size:130 final size:130
Alignment explanation
Indices: 7343687--7346052 Score: 3738
Period size: 130 Copynumber: 18.2 Consensus size: 130
7343677 TGTGGTTTTA
* * * * * *
7343687 GTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGATGCGATCTGCTCTTCTGTAACTTCATAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** * * ** *
7343752 ATATATGAT-TCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
7343816 GTCCGCTCCACTGTAACTTCAGGGAGATAAGACTGGGTGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
7343881 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
7343946 GTCTGCTCCACTGTAACTTTAGGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
7344011 AGATAAGATCTTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * *
7344076 GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** *
7344141 AGATAAGAT-TTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
7344205 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
7344270 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
7344335 GTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* **
7344400 AGATAAGATCTTGTGGTTTTAATCCGCTCCGCTGCAACTTCAGATAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * * *
7344465 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* ** *
7344530 AGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
7344594 GTCTGCTCCACTGTAACTTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
7344659 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
7344724 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAAAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
7344789 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * *
7344854 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATCTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** *
7344919 AGATAAGAT-TTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
7344983 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
7345048 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
7345113 GTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* **
7345178 AGATAAGATCTTGTGGTTTTAATCCGCTCCGCTGCAACTTCAGATAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * * *
7345243 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* ** *
7345308 AGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
7345372 GTCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
7345437 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
7345502 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAAAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
7345567 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * * *
7345632 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* ** *
7345697 AGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
7345761 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTTTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * *
7345826 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGAT-GAGATTGATTTCTTC
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG-GATTGGTTTCTTC
7345890 T
130 T
* * * *
7345891 ATCTGCTCCACTGTAACTTCAAGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * *
7345956 AGATAAGATATTGTGGTTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
7346021 GTCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA
7346053 TCTTATGGTT
Statistics
Matches: 2050, Mismatches: 179, Indels: 15
0.91 0.08 0.01
Matches are distributed among these distances:
129 647 0.32
130 1402 0.68
131 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (130 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
Found at i:7344376 original size:389 final size:389
Alignment explanation
Indices: 7343687--7346052 Score: 4101
Period size: 389 Copynumber: 6.1 Consensus size: 389
7343677 TGTGGTTTTA
* * * * * * *
7343687 GTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGATGCGATCTGCTCTTCTGTAACTTCATAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* * * * *
7343752 ATATATGAT-TCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGCTTTT
66 AGATAAGATCT-GTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
* * *
7343816 GTCCGCTCCACTGTAACTTCAGGGAGATAAGACTGGGTGTGATCTGCTCTACTGCAACTTCAGAG
130 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
7343881 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
195 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
7343946 GTCTGCTCCACTGTAACTTTAGGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAG
260 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
7344011 AGATAAGATCTTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
325 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
*
7344076 GTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* *
7344141 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
*
7344206 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
7344271 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
*
7344336 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
7344401 GATAAGATCTTGTGGTTTTAATCCGCTCCGCTGCAACTTC-AGATAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAG-GAGATAGGATTGGTTTCTTCT
* *
7344465 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
7344530 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
* *
7344595 TCTGCTCCACTGTAACTTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
7344660 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
* *
7344725 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAAAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
7344790 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
*
7344854 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATCTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* *
7344919 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
7344984 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
7345049 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
*
7345114 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
7345179 GATAAGATCTTGTGGTTTTAATCCGCTCCGCTGCAACTTC-AGATAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAG-GAGATAGGATTGGTTTCTTCT
* *
7345243 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
7345308 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
*
7345373 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
7345438 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
* *
7345503 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAAAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
7345568 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
* *
7345632 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
7345697 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
*
7345762 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTTTACTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
7345827 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGAT-GAGATTGATTTCTTCT
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG-GATTGGTTTCTTCT
* * * *
7345891 ATCTGCTCCACTGTAACTTCAAGGAGATAAGACTAGATGTGATCTGCTCTACTGCAACTTCAGAG
260 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * * *
7345956 AGATAAGATATTGTGGTTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTCT
325 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
* * *
7346021 GTCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGA
7346053 TCTTATGGTT
Statistics
Matches: 1888, Mismatches: 83, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
388 4 0.00
389 1881 1.00
390 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (389 bp):
GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
Found at i:7346274 original size:129 final size:130
Alignment explanation
Indices: 7346022--7346274 Score: 323
Period size: 129 Copynumber: 2.0 Consensus size: 130
7346012 GTTTCTTCTG
* * *
7346022 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTATGGTTTTAATCCTCTCCACTGTAACCTCA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGATCTTATGGTTTTAATCCGCTCCACTGCAACCTCA
* **** *
7346087 GGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGA
66 AGGAGATAGGATTACCATCTTCTGCCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGA
* * **
7346152 TCTGCTCTACTACAACTTTAGAGAGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAATTTCA
1 TCTGCTCTACTACAACTTCAGAGAGATAAGATCTTATGGTTTTAATCCGCTCCACTGCAACCTCA
** *
7346216 AGGAGATAGGATTTACCATCTTC-GACCTGCTCCACTACTGC-TTAGGGAGATAGGACTGG
66 AGGAGATAGGA-TTACCATCTTCTG-CCTGCTCCACTACAACTTTAGGGAGATAAGACTGG
7346275 TGGCTTAAAT
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
129 54 0.51
130 51 0.49
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (130 bp):
TCTGCTCTACTACAACTTCAGAGAGATAAGATCTTATGGTTTTAATCCGCTCCACTGCAACCTCA
AGGAGATAGGATTACCATCTTCTGCCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGA
Found at i:7346396 original size:46 final size:46
Alignment explanation
Indices: 7346335--7347331 Score: 1368
Period size: 46 Copynumber: 21.7 Consensus size: 46
7346325 CGACCTACTT
* *
7346335 CGCTGCCAAATACAGGAAGACAAGACCTGCTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
7346381 TGCTGCCAAATACAGGAAGACAAGATCTGCTAACTTCGATGCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7346427 TGTTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7346473 CACTGCCAAATACAAGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
7346519 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
7346565 TGCTGCCAAATACAGGAAGATAAGATCTGTTATCTTTGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7346611 CGCTACCAAATACAGGAAGAAAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7346657 CGCTGCCAAATACAGTAAGACAAGATCTACTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * * *
7346703 TGCTGCCAAATACAGAAAGACAAGATCTACTATCTTTGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * * * * *
7346749 CACTACCAAATACAGGAAGACGAGATCTACTAACTTCGATCTATTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
7346795 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* ** * *
7346841 CACTGTAAAATATAGGAAGACAAGATCTGCTATCTTTGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
7346887 CACTGCCAAATATAGGAAGACAAGATCTGATATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7346933 CGCTGCTAAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
*
7346979 CACTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
7347025 CGCTGCCAAATATAGGAAGATAAGATCTACTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
7347071 CGCTGCCAAATACAGGAAGACAA-AGTCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGA-TCTGCTATCTTCGATCCACTC
* ** * *
7347117 CACTGTAAAATACA-GAGAGACAAGATCTGCTATCTTTGATCTACTC
1 CGCTGCCAAATACAGGA-AGACAAGATCTGCTATCTTCGATCCACTC
** * * * * *
7347163 TACTACGAAATATAGGAAGACAAGATCTGCTCTCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
7347209 CTCTGCTAAATACAGGAAGACAAGATCTGCTACCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
7347255 CGCTGCCAAATACAGGAAGACAAGATCTACTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
7347301 TGCTGCCAAATATAGGAAGATAAGATCTGCT
1 CGCTGCCAAATACAGGAAGACAAGATCTGCT
7347332 GCTTCTAGTC
Statistics
Matches: 848, Mismatches: 99, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
45 3 0.00
46 842 0.99
47 3 0.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (46 bp):
CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
Found at i:7347756 original size:24 final size:24
Alignment explanation
Indices: 7347707--7347758 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7347697 CCCCCTACTC
**
7347707 TAATCTTCAGAGTTCAATCCGTTG
1 TAATCTTCAGAGTTCAATCCACTG
*
7347731 TAATCTTCA-AGGTTCAGTCCACTG
1 TAATCTTCAGA-GTTCAATCCACTG
7347755 TAAT
1 TAAT
7347759 TTTGGGACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (24 bp):
TAATCTTCAGAGTTCAATCCACTG
Found at i:7348372 original size:108 final size:106
Alignment explanation
Indices: 7348224--7348420 Score: 234
Period size: 108 Copynumber: 1.8 Consensus size: 106
7348214 GGAAAATGCT
* * * *
7348224 TGAAAAAGATTATCACAATGGGAAAGGCAAAATCTTATTGAGAGCAGAGCTCTAAACAAAGAAAT
1 TGAAAAAGATTATCACAATGGGAAAGACAAAATCTTATTGAGAACAAAGCTCGAAACAAAGAAA-
*
7348289 TAATCAGGACAGCAAATTTTGCTAAGATTCAAAATGAATAAGA
65 TAATCAAGACAGCAAA-TTTGCTAAGATTCAAAATGAATAAGA
* ** * * * * *
7348332 TGAAAAGGATTATCACAAT-GGACAAGATGAAATTTTATTGATAACAAAGCTCGCAATAAATAAA
1 TGAAAAAGATTATCACAATGGGA-AAGACAAAATCTTATTGAGAACAAAGCTCGAAACAAAGAAA
*
7348396 TAATCAAGATAGCAAATTTGCTAAG
65 TAATCAAGACAGCAAATTTGCTAAG
7348421 TTACTATGAG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
106 9 0.12
107 17 0.23
108 48 0.65
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.24
Consensus pattern (106 bp):
TGAAAAAGATTATCACAATGGGAAAGACAAAATCTTATTGAGAACAAAGCTCGAAACAAAGAAAT
AATCAAGACAGCAAATTTGCTAAGATTCAAAATGAATAAGA
Found at i:7348767 original size:8 final size:9
Alignment explanation
Indices: 7348754--7348802 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 9
7348744 CTCCTTTTTA
7348754 TTTTCTT-C
1 TTTTCTTCC
7348762 TTTTCTTTCC
1 TTTTC-TTCC
7348772 TTTT-TTCC
1 TTTTCTTCC
7348780 TTTTCTTTTCC
1 TTTTC--TTCC
7348791 TTTTCTT-C
1 TTTTCTTCC
7348799 TTTT
1 TTTT
7348803 TTGTTTGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
8 18 0.50
9 4 0.11
10 5 0.14
11 9 0.25
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTCTTCC
Found at i:7348769 original size:19 final size:18
Alignment explanation
Indices: 7348747--7348822 Score: 57
Period size: 20 Copynumber: 4.0 Consensus size: 18
7348737 TAGGCTTCTC
7348747 CTTTTTATTTTCTTCTTTT
1 CTTTTT-TTTTCTTCTTTT
7348766 CTTTCCTTTTTTC--CTTTT
1 CTTT--TTTTTTCTTCTTTT
*
7348784 CTTTTCCTTTTCTTCTTTT
1 CTTTT-TTTTTCTTCTTTT
* *
7348803 TTGTTTGTTTTTTTTCTTTT
1 CT-TTT-TTTTTCTTCTTTT
7348823 GAACATTCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
16 1 0.02
17 5 0.11
18 9 0.20
19 10 0.22
20 19 0.41
21 2 0.04
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (18 bp):
CTTTTTTTTTCTTCTTTT
Found at i:7354570 original size:18 final size:18
Alignment explanation
Indices: 7354543--7354585 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7354533 GTGAGAAAAA
*
7354543 ATATAAATATAAATATAC
1 ATATATATATAAATATAC
*
7354561 ATATATATATAAATATAT
1 ATATATATATAAATATAC
7354579 ATATATA
1 ATATATA
7354586 AAATGAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATATATATAAATATAC
Found at i:7354578 original size:14 final size:14
Alignment explanation
Indices: 7354561--7354587 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7354551 ATAAATATAC
7354561 ATATATATATAAAT
1 ATATATATATAAAT
7354575 ATATATATATAAA
1 ATATATATATAAA
7354588 ATGAGTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATATATATAAAT
Found at i:7354585 original size:6 final size:6
Alignment explanation
Indices: 7354541--7354583 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
7354531 TCGTGAGAAA
* * *
7354541 AAATAT AAATAT AAATAT ACATAT ATATAT AAATAT ATATAT A
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT A
7354584 TAAAATGAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (6 bp):
AAATAT
Found at i:7354733 original size:3 final size:3
Alignment explanation
Indices: 7354715--7354832 Score: 139
Period size: 3 Copynumber: 39.3 Consensus size: 3
7354705 AAGTGTAAAT
* * * * * * **
7354715 ATA ATG ATA GTA ATA ATA ATA TTA GTA ATA ATA CTA ATA ATA GTA ACG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7354763 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7354811 ATA ATA ATGA ACA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA A
7354833 AACTACTGAA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
2 2 0.02
3 93 0.96
4 2 0.02
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7361144 original size:17 final size:17
Alignment explanation
Indices: 7361124--7361197 Score: 76
Period size: 17 Copynumber: 4.4 Consensus size: 17
7361114 AAATTACAAC
*
7361124 TCATGCAAAATAATAGT
1 TCATGCAAAATAACAGT
*** *
7361141 TCATATGAAATATCAGT
1 TCATGCAAAATAACAGT
* **
7361158 TCATACTGAATAACAGT
1 TCATGCAAAATAACAGT
7361175 TCATGCAAAATAACAGT
1 TCATGCAAAATAACAGT
7361192 TCATGC
1 TCATGC
7361198 TCCATCATAA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 45 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (17 bp):
TCATGCAAAATAACAGT
Found at i:7361151 original size:51 final size:51
Alignment explanation
Indices: 7361092--7361195 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
7361082 ACATCTATTT
** * *
7361092 ATATGAAATAACAGTTTTTACCAAATTACAACTCATGCAAAATAATAGTTC
1 ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
* ** **
7361143 ATATGAAATATCAGTTCATACTGAATAACAGTTCATGCAAAATAACAGTTC
1 ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
7361194 AT
1 AT
7361196 GCTCCATCAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (51 bp):
ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
Found at i:7361866 original size:18 final size:18
Alignment explanation
Indices: 7361841--7361891 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7361831 ACAATTTAGA
7361841 AAATTAATACAGTTCACC
1 AAATTAATACAGTTCACC
* * *
7361859 AGATTAATACAGATAACC
1 AAATTAATACAGTTCACC
*
7361877 AAATTAACACAGTTC
1 AAATTAATACAGTTC
7361892 GCCATAATAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.25
Consensus pattern (18 bp):
AAATTAATACAGTTCACC
Found at i:7372512 original size:24 final size:24
Alignment explanation
Indices: 7372485--7372530 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
7372475 CTTGAAACCA
7372485 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
7372509 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
7372531 TCTCTTCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.48, G:0.04, T:0.35
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:7372572 original size:14 final size:14
Alignment explanation
Indices: 7372553--7372582 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7372543 ATCGATTGCA
7372553 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
7372567 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
7372581 GC
1 GC
7372583 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:7372743 original size:18 final size:18
Alignment explanation
Indices: 7372720--7372771 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
7372710 TGTAGTAGAT
7372720 GTGTTTTCTGCAAATGGG
1 GTGTTTTCTGCAAATGGG
7372738 GTGTTTTCTGCAAAT-GG
1 GTGTTTTCTGCAAATGGG
7372755 GTAGTTTTCTGCAAATG
1 GT-GTTTTCTGCAAATG
7372772 TTTTCTGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 4 0.12
18 28 0.88
ACGTcount: A:0.19, C:0.12, G:0.29, T:0.40
Consensus pattern (18 bp):
GTGTTTTCTGCAAATGGG
Found at i:7372792 original size:14 final size:13
Alignment explanation
Indices: 7372758--7372783 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7372748 CAAATGGGTA
7372758 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
7372771 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
7372784 CAGTTTCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTGCAAAT
Found at i:7376604 original size:88 final size:88
Alignment explanation
Indices: 7376486--7377232 Score: 1140
Period size: 88 Copynumber: 8.5 Consensus size: 88
7376476 AAGACTGATG
* * * * *
7376486 TCTTCGATCTGCTTCGCTGCCAGTATAGGAAGGCAAGATCTGCCATTTTCGACCTACTCCACTGC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
7376551 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
7376574 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCGACCTACTCCACTGC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
7376639 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
7376662 TCTTCGATCTGCTTCGT-TGTCAGTACAGGAAGGCAGGATCTGTCATTTTCAACCTACTCCACTA
1 TCTTCGATCTGCTTC-TCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTA
7376726 CTGCCCAGGGAGACAAGGCTGGTA
65 CTGCCCAGGGAGACAAGGCTGGTA
* * * * * * * *
7376750 TCTTTGATTTGCTTCGCTGTCAGTACAGGAAGGTAAGATCTTCTATTTTCAACCTGCTCCGCTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
7376815 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
7376838 TCTTCGATCTGCTTCGT-TGTCAGTACAGGAAGGTAAGATCTGCTATTTTCAACCTACTCCACTA
1 TCTTCGATCTGCTTC-TCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTA
7376902 CTGCCCAGGGAGACAAGGCTGGTA
65 CTGCCCAGGGAGACAAGGCTGGTA
* *
7376926 TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
*
7376991 TGCCCAGGGAGACAAGGCTGATA
66 TGCCCAGGGAGACAAGGCTGGTA
* * * * * * *
7377014 TCTTTGATCTGCTTCGCTGTCAGTAAAGGAAGGTAAGATCTGCTATTTTCAACCTGCTCCGCTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
*
7377079 TGCCCAGGGAGACAAGGCTAGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* * *
7377102 TCTTCGATCTACTTCTCTGTCGGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
*
7377167 TGCCCAAGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
7377190 TCTTCGATCTGCTT-TGCTGTCAGTACAGGAAGGCAAGATCTGC
1 TCTTCGATCTGCTTCT-CTGTCAGTACAGGAAGGCAAGATCTGC
7377233 TATCTTCAGT
Statistics
Matches: 602, Mismatches: 52, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
87 1 0.00
88 600 1.00
89 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCCATTTTCAACCTACTCCACTAC
TGCCCAGGGAGACAAGGCTGGTA
Found at i:7378534 original size:17 final size:16
Alignment explanation
Indices: 7378503--7378549 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
7378493 CCTTAGCCTC
7378503 TCCA-TTTTA-TTTTT
1 TCCATTTTTATTTTTT
7378517 TCCATTTTTCATTTTTT
1 TCCATTTTT-ATTTTTT
**
7378534 TTTATTTTTATTTTTT
1 TCCATTTTTATTTTTT
7378550 CACATCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 4 0.14
15 4 0.14
16 8 0.29
17 12 0.43
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (16 bp):
TCCATTTTTATTTTTT
Found at i:7379089 original size:16 final size:16
Alignment explanation
Indices: 7379054--7379105 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
7379044 GGTAGAGGTT
*
7379054 TTTTTGTTTCTTTTTG
1 TTTTTGTTTCTTTTTC
7379070 TTTTTGTTT-TTTATTC
1 TTTTTGTTTCTTT-TTC
* *
7379086 TTTTT-CTTCTTCTTC
1 TTTTTGTTTCTTTTTC
7379101 TTTTT
1 TTTTT
7379106 TTTTGCATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 13 0.42
16 18 0.58
ACGTcount: A:0.02, C:0.12, G:0.06, T:0.81
Consensus pattern (16 bp):
TTTTTGTTTCTTTTTC
Found at i:7385374 original size:29 final size:30
Alignment explanation
Indices: 7385331--7385389 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
7385321 TTGATACCTA
*
7385331 TACTATTATAAATGTTTAATGCGGTACTTG
1 TACTATGATAAATGTTTAATGCGGTACTTG
*
7385361 TACTATGA-AAATGTTTAATGTGGTACTTG
1 TACTATGATAAATGTTTAATGCGGTACTTG
7385390 AATTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (30 bp):
TACTATGATAAATGTTTAATGCGGTACTTG
Found at i:7391871 original size:33 final size:34
Alignment explanation
Indices: 7391829--7392060 Score: 124
Period size: 33 Copynumber: 6.6 Consensus size: 34
7391819 CAGATGCGGT
7391829 GGAATCAGCACTTAGCAACCACCAAT-GAATAGG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
*
7391862 GGAATCAGCACTTAGCAACC-CC--TCG----GG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
* *
7391889 GGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAACCAC----CA-A--TAGAATA-GG
* **
7391931 TGGGATCAGCACTTAGCAACCACCAAT-GGGTAGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
*
7391965 GGAATCAGCACTTAGCAACCACCTTTTACATTTAAAATACGG
1 GGAATCAGCACTTAGCAACCACC----A-A--TAGAATA-GG
* * *
7392007 TGGGATCAGCACTTAGCAACCACC-ATTGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
**
7392041 GGAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
7392061 CCTTTATATG
Statistics
Matches: 154, Mismatches: 18, Indels: 54
0.68 0.08 0.24
Matches are distributed among these distances:
27 22 0.14
28 1 0.01
30 1 0.01
31 1 0.01
32 3 0.02
33 59 0.38
34 4 0.03
35 6 0.04
36 1 0.01
37 3 0.02
38 2 0.01
39 2 0.01
40 1 0.01
41 2 0.01
42 4 0.03
43 42 0.27
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (34 bp):
GGAATCAGCACTTAGCAACCACCAATAGAATAGG
Found at i:7391894 original size:27 final size:27
Alignment explanation
Indices: 7391860--7391911 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
7391850 CCAATGAATA
7391860 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACTTAGCAACCCCTCG
7391887 GGGGAATCAGCACTTAGCAACCCCT
1 GGGGAATCAGCACTTAGCAACCCCT
7391912 TTTCACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.15
Consensus pattern (27 bp):
GGGGAATCAGCACTTAGCAACCCCTCG
Found at i:7391958 original size:103 final size:101
Alignment explanation
Indices: 7391725--7391984 Score: 380
Period size: 103 Copynumber: 2.6 Consensus size: 101
7391715 TAATCGTTAT
* * ** *
7391725 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCA-GGGAATCAGCACACAGCAA-CCCTTGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAAT-AGGGGAATCAGCACTTAGCAACCCCTCGGG
* * *
7391788 GGAATCAGCACTTAGCAACCCCTTCACATTTCAGATG
65 GGAATCAGCACTTAGCAACCCCTTCACATTTAAAATA
7391825 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
7391890 GAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCC--TTCACATTTAAAATA
* **
7391928 CGGTGGGATCAGCACTTAGCAACCACCAATGGGTAGGGGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACC
7391985 ACCTTTTACA
Statistics
Matches: 145, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
99 1 0.01
100 49 0.34
101 29 0.20
103 66 0.46
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (101 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCTTCACATTTAAAATA
Found at i:7391996 original size:76 final size:76
Alignment explanation
Indices: 7391887--7392065 Score: 288
Period size: 76 Copynumber: 2.4 Consensus size: 76
7391877 CAACCCCTCG
7391887 GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
**
7391952 ACCAATGGGTA
66 ACCAATGAATA
7391963 GGGGAATCAGCACTTAGCAACCACCTTTT-ACATTTAAAATACGGTGGGATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAACC-CCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAAC
* *
7392027 CACCATTGAATC
65 CACCAATGAATA
**
7392039 GGGGAATCAGCACACAGCAACCCCTTT
1 GGGGAATCAGCACTTAGCAACCCCTTT
7392066 ATATGCAATA
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
75 5 0.05
76 85 0.89
77 6 0.06
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
ACCAATGAATA
Found at i:7395421 original size:40 final size:40
Alignment explanation
Indices: 7395376--7395478 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
7395366 AAAAAATGCC
*
7395376 GCTAAAAATCGAGCATTAGCGGCGCTTTACA-TAAAACGCA
1 GCTAAAAATCGAGCATTAGCGGCGCTTTA-AGGAAAACGCA
* * * *
7395416 GCTAAAGATCGAGTATTAGCGGCGCTTTAAGGAAAGCGCT
1 GCTAAAAATCGAGCATTAGCGGCGCTTTAAGGAAAACGCA
*
7395456 GCTAAAAAT-GGGCATTAGCGGCG
1 GCTAAAAATCGAGCATTAGCGGCG
7395479 TTTTTTTTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.20
Consensus pattern (40 bp):
GCTAAAAATCGAGCATTAGCGGCGCTTTAAGGAAAACGCA
Found at i:7395597 original size:41 final size:41
Alignment explanation
Indices: 7395529--7395725 Score: 295
Period size: 41 Copynumber: 4.8 Consensus size: 41
7395519 CTGACTTTTT
* *
7395529 GGGGCTTTAGCGGGGTTTTTGACAAAGCGCCGCTAATGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
* * *
7395570 AGGGCTTTAGCGGCGTTTGTGAGAAAGCGCCGCTAACGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
*
7395611 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTT
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
* * *
7395652 GGGGATTTAGCGACGTTTTTGACAAAGCGACGCTAACGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
* *
7395693 GGGGCTTTAGCGGCATTTTTGACAAAGTGCCGC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGC
7395726 AAAAATATTT
Statistics
Matches: 138, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 138 1.00
ACGTcount: A:0.19, C:0.23, G:0.32, T:0.25
Consensus pattern (41 bp):
GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
Found at i:7395760 original size:20 final size:19
Alignment explanation
Indices: 7395730--7395777 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
7395720 TGCCGCAAAA
*
7395730 ATATTTTATTTGTCTATTT
1 ATATTTAATTTGTCTATTT
*
7395749 ACTATTTAATTTGTTTATTT
1 A-TATTTAATTTGTCTATTT
7395769 ATA-TTAATT
1 ATATTTAATT
7395778 AAAATTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 3 0.12
20 17 0.65
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (19 bp):
ATATTTAATTTGTCTATTT
Found at i:7396081 original size:14 final size:15
Alignment explanation
Indices: 7396053--7396085 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7396043 AAGGTTTATA
7396053 GATTATGGAATTAGG
1 GATTATGGAATTAGG
7396068 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
7396082 GATT
1 GATT
7396086 TTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:7396774 original size:23 final size:24
Alignment explanation
Indices: 7396738--7396832 Score: 113
Period size: 23 Copynumber: 3.9 Consensus size: 24
7396728 TTGATATATT
7396738 TAAATATTAGTTTAAATAAAATTAA
1 TAAATA-TAGTTTAAATAAAATTAA
*
7396763 TAAATA-AGTTTAAATAAAATATATT
1 TAAATATAGTTTAAATAAAAT-TA-A
* *
7396788 TAAATATTAATTTAAATAGAATTAA
1 TAAATA-TAGTTTAAATAAAATTAA
7396813 TAAATATA-TTTAAATAAAAT
1 TAAATATAGTTTAAATAAAAT
7396833 AATTTTTGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
23 25 0.41
24 4 0.07
25 18 0.30
26 2 0.03
27 12 0.20
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (24 bp):
TAAATATAGTTTAAATAAAATTAA
Found at i:7396786 original size:50 final size:50
Alignment explanation
Indices: 7396731--7396837 Score: 173
Period size: 50 Copynumber: 2.2 Consensus size: 50
7396721 AAACCATTTG
*
7396731 ATATATTTAAATATTAGTTTAAATAAAATTAATAAATA-AGTTTAAATAAA
1 ATATATTTAAATATTAATTTAAATAAAATTAATAAATATA-TTTAAATAAA
*
7396781 ATATATTTAAATATTAATTTAAATAGAATTAATAAATATATTTAAATAAA
1 ATATATTTAAATATTAATTTAAATAAAATTAATAAATATATTTAAATAAA
7396831 ATA-ATTT
1 ATATATTT
7396838 TTGTTCAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
49 4 0.07
50 49 0.91
51 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (50 bp):
ATATATTTAAATATTAATTTAAATAAAATTAATAAATATATTTAAATAAA
Found at i:7400755 original size:43 final size:43
Alignment explanation
Indices: 7400708--7400790 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
7400698 TTATATCTTT
* * *
7400708 GATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACCAA
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
* *
7400751 GATTTACTTGATTAAGAAAATGCATTGTATGTTTTATTAC
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC
7400791 TTTGCATATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.46
Consensus pattern (43 bp):
GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
Found at i:7401118 original size:43 final size:42
Alignment explanation
Indices: 7401053--7401299 Score: 296
Period size: 43 Copynumber: 5.8 Consensus size: 42
7401043 TATGTTATTG
* *
7401053 GCGGCGTTTTTGTGAAAAGTGTCGCTAAAGGTCTTGATCTATA
1 GCGGCGTTTGTG-GAAAAGCGTCGCTAAAGGTCTTGATCTATA
* * * * * *
7401096 GCGTCGTTTGTGAAAAAAGTGTCACTAAAGGTTTTGAGCTATA
1 GCGGCGTTTGTG-GAAAAGCGTCGCTAAAGGTCTTGATCTATA
* *
7401139 GCGACGTTTGTTGGAAAAGCGTCGCTAAAGATCTTGATCTATA
1 GCGGCGTTTG-TGGAAAAGCGTCGCTAAAGGTCTTGATCTATA
* * *
7401182 GCGGCATTTGTGAGAAAAGCGCCGCTAAAGGTCTTGAGCTATA
1 GCGGCGTTTGTG-GAAAAGCGTCGCTAAAGGTCTTGATCTATA
* * *
7401225 GCGGCGTTTGTGGAGAAGCGCCGCTAAAAGTCTTGATCTATA
1 GCGGCGTTTGTGGAAAAGCGTCGCTAAAGGTCTTGATCTATA
*
7401267 GTGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTC
1 GCGGCGTTTGTGG-AAAAGCGTCGCTAAAGGTC
7401300 GTGGTCTTTA
Statistics
Matches: 174, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
42 41 0.24
43 131 0.75
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (42 bp):
GCGGCGTTTGTGGAAAAGCGTCGCTAAAGGTCTTGATCTATA
Found at i:7404761 original size:9 final size:9
Alignment explanation
Indices: 7404747--7404777 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7404737 GTTAAAAGAA
7404747 TCGAGTTAT
1 TCGAGTTAT
*
7404756 TCGAGTTAA
1 TCGAGTTAT
7404765 TCGAGTTAT
1 TCGAGTTAT
7404774 TCGA
1 TCGA
7404778 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7404848 original size:9 final size:9
Alignment explanation
Indices: 7404831--7404867 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7404821 TGAGTTTTCG
7404831 AATTCGAAT
1 AATTCGAAT
*
7404840 AACTCGAAT
1 AATTCGAAT
*
7404849 AATTCAAAT
1 AATTCGAAT
7404858 AATTCGAAT
1 AATTCGAAT
7404867 A
1 A
7404868 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7405121 original size:30 final size:31
Alignment explanation
Indices: 7405085--7405144 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
7405075 AAACCTTTTA
*
7405085 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
** *
7405115 TTTTCCCTTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
7405145 TCCCACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:7409987 original size:31 final size:29
Alignment explanation
Indices: 7409939--7410005 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
7409929 TTGAAAATTT
* **
7409939 TAAAATTAATTTAAATATAGTTATGTTTAGG
1 TAAAATTAAGTTAAATATA--TACCTTTAGG
7409970 TAAAATTAACGTT-AATATATACCTTTAGG
1 TAAAATTAA-GTTAAATATATACCTTTAGG
7409999 TAAAATT
1 TAAAATT
7410006 TTAAAATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 15 0.47
31 15 0.47
32 2 0.06
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (29 bp):
TAAAATTAAGTTAAATATATACCTTTAGG
Found at i:7414061 original size:31 final size:32
Alignment explanation
Indices: 7414025--7414089 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
7414015 CTTAGATAAT
7414025 TTTAAAGA-GTTTTATTAGGATTCAATTACTC
1 TTTAAAGATGTTTTATTAGGATTCAATTACTC
*
7414056 TTTAAAGATTTTTTATTAGGATTCAATTACTC
1 TTTAAAGATGTTTTATTAGGATTCAATTACTC
7414088 TT
1 TT
7414090 ATAATTTGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 8 0.25
32 24 0.75
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (32 bp):
TTTAAAGATGTTTTATTAGGATTCAATTACTC
Found at i:7416215 original size:27 final size:27
Alignment explanation
Indices: 7416184--7416244 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
7416174 TATACTTTTT
7416184 TGTGTTTAATGTCCCGACAAACTATCCC
1 TGTGTTTAATGTCCCGACAAACTA-CCC
* * *
7416212 -GTG-TTCATGTCTCGACGAACTACCC
1 TGTGTTTAATGTCCCGACAAACTACCC
7416237 TGTGTTTA
1 TGTGTTTA
7416245 CTATCCCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
25 3 0.11
26 19 0.70
27 5 0.19
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (27 bp):
TGTGTTTAATGTCCCGACAAACTACCC
Found at i:7416467 original size:27 final size:27
Alignment explanation
Indices: 7416437--7416521 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
7416427 ATCTACCGTA
*
7416437 TGTCTCGACAGACTACCCCGTGTTTAC
1 TGTCTCGACAGACTACCCCGTATTTAC
* * **
7416464 TGTCTCAACGGACTACCCTATATTTAC
1 TGTCTCGACAGACTACCCCGTATTTAC
*
7416491 TGTCTCGACTA-ACTACACCGTATTTAC
1 TGTCTCGAC-AGACTACCCCGTATTTAC
7416518 TGTC
1 TGTC
7416522 CTGATGAACT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (27 bp):
TGTCTCGACAGACTACCCCGTATTTAC
Found at i:7419033 original size:21 final size:21
Alignment explanation
Indices: 7419009--7419048 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7418999 GTAAAATAAA
7419009 AAAGAA-ACAAACAAACAAAAC
1 AAAGAAGA-AAACAAACAAAAC
*
7419030 AAAGAAGAAAAGAAACAAA
1 AAAGAAGAAAACAAACAAA
7419049 GAGTAATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.78, C:0.12, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAACAAACAAAAC
Found at i:7419501 original size:11 final size:11
Alignment explanation
Indices: 7419485--7419509 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7419475 GAATTTACGG
7419485 TAGAAATTGAA
1 TAGAAATTGAA
7419496 TAGAAATTGAA
1 TAGAAATTGAA
7419507 TAG
1 TAG
7419510 GAAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.28
Consensus pattern (11 bp):
TAGAAATTGAA
Found at i:7424282 original size:20 final size:21
Alignment explanation
Indices: 7424256--7424306 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
7424246 TTGTCTGGAC
* *
7424256 CAAATAAGAAACCAAAAAAAT
1 CAAATAAAAAAACAAAAAAAT
*
7424277 -AAATAAAAAAATAAAAAAAT
1 CAAATAAAAAAACAAAAAAAT
7424297 CAAATAAAAA
1 CAAATAAAAA
7424307 GTCCAAGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.78, C:0.08, G:0.02, T:0.12
Consensus pattern (21 bp):
CAAATAAAAAAACAAAAAAAT
Found at i:7425698 original size:15 final size:16
Alignment explanation
Indices: 7425664--7425704 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7425654 TGTTACTTAT
*
7425664 TTTTTATTATTATGCA
1 TTTTTATTATTATCCA
7425680 TTTTTATT-TTATCC-
1 TTTTTATTATTATCCA
*
7425694 CTTTTATTATT
1 TTTTTATTATT
7425705 GTTGTTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 7 0.32
15 7 0.32
16 8 0.36
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.68
Consensus pattern (16 bp):
TTTTTATTATTATCCA
Found at i:7427227 original size:5 final size:5
Alignment explanation
Indices: 7427217--7427245 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7427207 AATATTATTT
7427217 ATTAA ATTAA ATTAA ATTAA ATT-A ATTAA
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA
7427246 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:7429972 original size:24 final size:24
Alignment explanation
Indices: 7429940--7430007 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
7429930 TTTACCTAAA
7429940 TTTTATAATTTCTT-TATTTTATCT
1 TTTTATAATTT-TTATATTTTATCT
* **
7429964 TTTTGTAATTTTTATATTTTATAA
1 TTTTATAATTTTTATATTTTATCT
*
7429988 TTTTA-ATTCTTTTATATTTT
1 TTTTATAAT-TTTTATATTTT
7430008 TTTAATAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 4 0.11
24 33 0.89
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (24 bp):
TTTTATAATTTTTATATTTTATCT
Found at i:7434904 original size:16 final size:16
Alignment explanation
Indices: 7434883--7434917 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7434873 TTTTTATAAA
7434883 TTATTTTATATAA-ATT
1 TTATTTTAT-TAACATT
7434899 TTATTTTATTAACATT
1 TTATTTTATTAACATT
7434915 TTA
1 TTA
7434918 ATAATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTTATTAACATT
Found at i:7439315 original size:14 final size:14
Alignment explanation
Indices: 7439296--7439322 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7439286 TAATCAACAA
7439296 TTATTTAATTAAAT
1 TTATTTAATTAAAT
7439310 TTATTTAATTAAA
1 TTATTTAATTAAA
7439323 AATTAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATTTAATTAAAT
Found at i:7440859 original size:24 final size:24
Alignment explanation
Indices: 7440810--7440859 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
7440800 TAATTTATTA
* **
7440810 TAATTATTTAATTTTTTTTCTAAT
1 TAATTATTCAATTTTTAATCTAAT
7440834 TAATTATTCAA-TTTTAATCTATAT
1 TAATTATTCAATTTTTAATCTA-AT
7440858 TA
1 TA
7440860 TCTACTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (24 bp):
TAATTATTCAATTTTTAATCTAAT
Found at i:7445978 original size:25 final size:27
Alignment explanation
Indices: 7445933--7445988 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 27
7445923 TGTATTCATA
7445933 TTTATATACATAAAATTTAATAAATATC
1 TTTATATACATAAAATTTAATAAATA-C
7445961 TTTATA-ACA-AAAA-TTAATAAATAC
1 TTTATATACATAAAATTTAATAAATAC
7445985 TTTA
1 TTTA
7445989 GTTGCTACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.18
25 10 0.36
26 4 0.14
27 3 0.11
28 6 0.21
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (27 bp):
TTTATATACATAAAATTTAATAAATAC
Done.