Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 28 of 185
Found at i:7807891 original size:13 final size:13
Alignment explanation
Indices: 7807873--7807898 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7807863 GATAATCTTC
7807873 AAAATAAATAAAT
1 AAAATAAATAAAT
7807886 AAAATAAATAAAT
1 AAAATAAATAAAT
7807899 TTAATTTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:7815340 original size:81 final size:81
Alignment explanation
Indices: 7815200--7815367 Score: 318
Period size: 81 Copynumber: 2.1 Consensus size: 81
7815190 ATCTTGGCAA
7815200 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTCTCTCAAAGGA
1 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTCTCTCAAAGGA
*
7815265 ATTACATAGATGATTT
66 AATACATAGATGATTT
*
7815281 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
1 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTCTCTCAAAGGA
7815346 AATACATAGATGATTT
66 AATACATAGATGATTT
7815362 ATTGAG
1 ATTGAG
7815368 GAAGGCTCAT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (81 bp):
ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTCTCTCAAAGGA
AATACATAGATGATTT
Found at i:7819219 original size:21 final size:21
Alignment explanation
Indices: 7819193--7819242 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
7819183 TGCCTCATCA
7819193 TAAGTTTTTGAAAATTTACTT
1 TAAGTTTTTGAAAATTTACTT
7819214 TAAGTTTTTGAAAATTTACTT
1 TAAGTTTTTGAAAATTTACTT
*
7819235 TAAATTTT
1 TAAGTTTT
7819243 ACATGTCTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (21 bp):
TAAGTTTTTGAAAATTTACTT
Found at i:7834246 original size:21 final size:21
Alignment explanation
Indices: 7834220--7834269 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
7834210 TACGATTTAG
7834220 GGTTTAGGGGATAAGGGTTGT
1 GGTTTAGGGGATAAGGGTTGT
7834241 GGTTTA-GGGATAAGGGTTGT
1 GGTTTAGGGGATAAGGGTTGT
*
7834261 AGTTTAGGG
1 GGTTTAGGG
7834270 TCTAGGTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (21 bp):
GGTTTAGGGGATAAGGGTTGT
Found at i:7835778 original size:22 final size:22
Alignment explanation
Indices: 7835751--7835797 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7835741 GTCTTTCTAC
7835751 TTAGGTTTAATCAGTATAAAAT
1 TTAGGTTTAATCAGTATAAAAT
7835773 TTAGGTTTAATCAGTATAAAAT
1 TTAGGTTTAATCAGTATAAAAT
7835795 TTA
1 TTA
7835798 AGAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (22 bp):
TTAGGTTTAATCAGTATAAAAT
Found at i:7837023 original size:18 final size:18
Alignment explanation
Indices: 7837000--7837044 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
7836990 AAGCAATTTT
7837000 TAAATTATATAACTTACA
1 TAAATTATATAACTTACA
7837018 TAAATTATATAACTTACA
1 TAAATTATATAACTTACA
*
7837036 TAACTTATA
1 TAAATTATA
7837045 AATATTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAATTATATAACTTACA
Found at i:7837029 original size:9 final size:9
Alignment explanation
Indices: 7837004--7837044 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7836994 AATTTTTAAA
7837004 TTATATAAC
1 TTATATAAC
* *
7837013 TTACATAAA
1 TTATATAAC
7837022 TTATATAAC
1 TTATATAAC
*
7837031 TTACATAAC
1 TTATATAAC
7837040 TTATA
1 TTATA
7837045 AATATTTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (9 bp):
TTATATAAC
Found at i:7837086 original size:17 final size:18
Alignment explanation
Indices: 7837066--7837099 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7837056 ACATTTTTAA
7837066 TATATATTTTT-AAAATC
1 TATATATTTTTCAAAATC
*
7837083 TATATTTTTTTCAAAAT
1 TATATATTTTTCAAAAT
7837100 TTATCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATATTTTTCAAAATC
Found at i:7837169 original size:46 final size:46
Alignment explanation
Indices: 7837116--7837258 Score: 176
Period size: 46 Copynumber: 3.2 Consensus size: 46
7837106 ATCATAGCTT
7837116 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
* * * *
7837162 AACTTACATAA-TACATATCTTA--AAT-A-A-AAT-AC-AATACATA
1 AACTTACATAACT-CAAAT-TTATCAATCATATCATAACTTATATATA
7837202 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
7837248 AACTTACATAA
1 AACTTACATAA
7837259 TACATATCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
39 3 0.04
40 21 0.27
41 6 0.08
42 3 0.04
43 2 0.03
44 3 0.04
45 6 0.08
46 32 0.41
47 3 0.04
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (46 bp):
AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
Found at i:7837216 original size:86 final size:86
Alignment explanation
Indices: 7837116--7837297 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
7837106 ATCATAGCTT
7837116 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
7837181 TTAAATAAAATACAATACATA
66 TTAAATAAAATACAATACATA
7837202 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
*
7837267 TTAAATAACATACAATACATA
66 TTAAATAAAATACAATACATA
7837288 AACTTACATA
1 AACTTACATA
7837298 TAAACTTGCA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 95 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (86 bp):
AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
TTAAATAAAATACAATACATA
Found at i:7837289 original size:40 final size:40
Alignment explanation
Indices: 7837159--7837297 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
7837149 TAACTTATAT
*
7837159 ATAAACTTACATAATACATATCTTAAATAAAATACAATAC
1 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
* * *
7837199 ATAAACTTACATAACT-CAAAT-TTATCAATCATATCATAACTTATAT
1 ATAAACTTACATAA-TACATATCTTA--AAT-A-A-CAT-AC-AATAC
7837245 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
1 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
7837285 ATAAACTTACATA
1 ATAAACTTACATA
7837298 TAAACTTGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
39 3 0.04
40 34 0.41
41 6 0.07
42 4 0.05
43 2 0.02
44 3 0.04
45 6 0.07
46 21 0.26
47 3 0.04
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (40 bp):
ATAAACTTACATAATACATATCTTAAATAACATACAATAC
Found at i:7837356 original size:9 final size:9
Alignment explanation
Indices: 7837326--7837945 Score: 519
Period size: 9 Copynumber: 67.2 Consensus size: 9
7837316 TTTAAATTAT
7837326 ATAACTTAC
1 ATAACTTAC
* *
7837335 ATAAATTAT
1 ATAACTTAC
7837344 ATAACTTAC
1 ATAACTTAC
7837353 ATAACTTAC
1 ATAACTTAC
*
7837362 ATACCTTAC
1 ATAACTTAC
* *
7837371 ATAAATTAA
1 ATAACTTAC
7837380 ATAACTTAC
1 ATAACTTAC
*
7837389 ATAACTTAA
1 ATAACTTAC
7837398 ATAACTTAC
1 ATAACTTAC
7837407 ATAA--TAC
1 ATAACTTAC
*
7837414 ATAACCTAC
1 ATAACTTAC
* *
7837423 CTAACTTAA
1 ATAACTTAC
*
7837432 ATAACTTAT
1 ATAACTTAC
*
7837441 ATAACTTAA
1 ATAACTTAC
7837450 ATAACTTAC
1 ATAACTTAC
7837459 ATAA--TAC
1 ATAACTTAC
*
7837466 ATAACCTAC
1 ATAACTTAC
* *
7837475 CTAACTTAA
1 ATAACTTAC
* *
7837484 ATTATTTAC
1 ATAACTTAC
7837493 ATAA--TAC
1 ATAACTTAC
7837500 ATAACTTAGTAC
1 ATAAC-T--TAC
*
7837512 ATAATTTAC
1 ATAACTTAC
7837521 ATAA--TAC
1 ATAACTTAC
7837528 ATAACTTATAC
1 ATAAC-T-TAC
7837539 ATAACTTAC
1 ATAACTTAC
* *
7837548 ATAATTTTTTC
1 ATAA--CTTAC
7837559 -TAAATTGCTTAC
1 AT-AA---CTTAC
* *
7837571 ATAAATTAT
1 ATAACTTAC
7837580 ATAACTTAC
1 ATAACTTAC
7837589 ATAACTTAC
1 ATAACTTAC
* *
7837598 ATAAATTAA
1 ATAACTTAC
7837607 ATAACTTAC
1 ATAACTTAC
7837616 ATAACTTAC
1 ATAACTTAC
*
7837625 ATAACTTAA
1 ATAACTTAC
*
7837634 ATAACTTAT
1 ATAACTTAC
*
7837643 ATAATTTAC
1 ATAACTTAC
*
7837652 ATAAATTAC
1 ATAACTTAC
7837661 ATAACTTAC
1 ATAACTTAC
7837670 ATAACTTATAC
1 ATAAC-T-TAC
7837681 ATAACTTATAC
1 ATAAC-T-TAC
*
7837692 ATAACTTAA
1 ATAACTTAC
*
7837701 ATAACTTAT
1 ATAACTTAC
*
7837710 ATAATTTAC
1 ATAACTTAC
*
7837719 ATAAATTAC
1 ATAACTTAC
7837728 ATAACTTAC
1 ATAACTTAC
7837737 ATAACTTATAC
1 ATAAC-T-TAC
7837748 ATAACTTATAC
1 ATAAC-T-TAC
7837759 ATAACTTATAC
1 ATAAC-T-TAC
7837770 ATAACTTAC
1 ATAACTTAC
* *
7837779 ATAATTTTTTC
1 ATAA--CTTAC
*
7837790 -TAAATTGCTAAC
1 AT-AA---CTTAC
* *
7837802 ATAAATTAT
1 ATAACTTAC
7837811 ATAACTTAC
1 ATAACTTAC
7837820 ATAACTTAC
1 ATAACTTAC
* *
7837829 ATAAATTAA
1 ATAACTTAC
7837838 ATAACTTAC
1 ATAACTTAC
7837847 ATAACTTAC
1 ATAACTTAC
* *
7837856 ATAGCTTAA
1 ATAACTTAC
7837865 ATAACTTAC
1 ATAACTTAC
7837874 ATAACTTAC
1 ATAACTTAC
*
7837883 ATAAATTAC
1 ATAACTTAC
7837892 ATAACTTAC
1 ATAACTTAC
7837901 ATAACTTAC
1 ATAACTTAC
7837910 ATAACTTAC
1 ATAACTTAC
7837919 ATAA--TAC
1 ATAACTTAC
7837926 ATAACCTT-C
1 ATAA-CTTAC
*
7837935 TTAACTTAC
1 ATAACTTAC
7837944 AT
1 AT
7837946 TATTGTCTAA
Statistics
Matches: 504, Mismatches: 76, Indels: 62
0.79 0.12 0.10
Matches are distributed among these distances:
7 35 0.07
8 3 0.01
9 370 0.73
10 8 0.02
11 68 0.13
12 18 0.04
13 2 0.00
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7842573 original size:42 final size:42
Alignment explanation
Indices: 7842518--7842845 Score: 367
Period size: 42 Copynumber: 7.7 Consensus size: 42
7842508 TTTGTGAAAC
* **
7842518 AAGCGCCGCTAAAGAACACTGCT-TTTAGCGGCGTTTTTGAAC-
1 AAGCGCCGCTAAAGAACA-TGATCTTTAGCGGCGTTTTT-TCCT
* ** *
7842560 AAGCGCCGCTAAAGAACATTA-CTTTTAAAGGCGTTTTATTCCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCCT
7842603 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCCT
* * ** * *
7842646 AAGCGCCGTTAAAGAAGATGAGATTTTGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
*
7842688 AAGCGCCGCTAAAAAACAT-ATTCTTTAGCGGCGTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTTTTCCT
*
7842730 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
* * *
7842772 AAACGCCGCTACAGAACATGATCTTTAGCGGCGTTTATTTCTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCT
* * **
7842815 TAGCGCCGCTAAAGAATATTTTCTTTAGCGG
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGG
7842846 TATTTTTTTG
Statistics
Matches: 242, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.01
42 144 0.60
43 91 0.38
44 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
Found at i:7842820 original size:127 final size:127
Alignment explanation
Indices: 7842521--7842845 Score: 390
Period size: 127 Copynumber: 2.5 Consensus size: 127
7842511 GTGAAACAAG
** * *
7842521 CGCCGCTAAAGAACACTG-CTTTTAGCGGCGTTT-TTGAAC-AAGCGCCGCTAAAGAACATTACT
1 CGCCGCTAAAGAACA-TGAGATTTAGCGGCGTTTATT--TCTAAGCGCCGCTAAAGAACATTTC-
**
7842583 TTTAAAGGCGTTTTATTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCTAA
62 TTTAGCGGCGTTTTATTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCTAA
*
7842648 G
127 A
* * * * *
7842649 CGCCGTTAAAGAAGATGAGATTTTGCGGCGTTTTTTTCTAAGCGCCGCTAAAAAACATATTCTTT
1 CGCCGCTAAAGAACATGAGATTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACAT-TTCTTT
*
7842714 AGCGGCGTTTT-TTCCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAA
65 AGCGGCGTTTTATTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCTAAA
* ** * *
7842775 CGCCGCTACAGAACATGATCTTTAGCGGCGTTTATTTCTTTAGCGCCGCTAAAGAATATTTTCTT
1 CGCCGCTAAAGAACATGAGATTTAGCGGCGTTTATTTC-TAAGCGCCGCTAAAGAACA-TTTCTT
7842840 TAGCGG
64 TAGCGG
7842846 TATTTTTTTG
Statistics
Matches: 169, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
126 35 0.21
127 74 0.44
128 56 0.33
129 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (127 bp):
CGCCGCTAAAGAACATGAGATTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACATTTCTTTA
GCGGCGTTTTATTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCTAAA
Found at i:7844273 original size:14 final size:15
Alignment explanation
Indices: 7844240--7844275 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7844230 AAGTAACATC
7844240 TTTTA-TAAGATACA
1 TTTTACTAAGATACA
7844254 -TTTACTAA-ATACA
1 TTTTACTAAGATACA
7844267 TTTTACTAA
1 TTTTACTAA
7844276 TTGTATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (15 bp):
TTTTACTAAGATACA
Found at i:7845597 original size:40 final size:40
Alignment explanation
Indices: 7845525--7845600 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
7845515 TAAATTGATG
*
7845525 CCACGTCAGCAAATCGCGTCCTAGAGGGCGCGATTTGTGT
1 CCACGTCAGCAAATCGCGTCCTAGAGGACGCGATTTGTGT
* *
7845565 CCACGTCAGCAAATCGCG-CTTACGTGGACGCGATTT
1 CCACGTCAGCAAATCGCGTCCTA-GAGGACGCGATTT
7845601 CCTAGTGCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 3 0.09
40 29 0.91
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (40 bp):
CCACGTCAGCAAATCGCGTCCTAGAGGACGCGATTTGTGT
Found at i:7847912 original size:43 final size:43
Alignment explanation
Indices: 7847859--7847984 Score: 234
Period size: 43 Copynumber: 2.9 Consensus size: 43
7847849 CGCTCTAGTG
7847859 GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGA
1 GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGA
7847902 GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGA
1 GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGA
*
7847945 GAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTT
1 GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCG-TTTTT
7847985 CCACAAACGC
Statistics
Matches: 81, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
43 76 0.94
44 5 0.06
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (43 bp):
GAAGCACCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTTGCGA
Found at i:7847996 original size:43 final size:43
Alignment explanation
Indices: 7847865--7848174 Score: 200
Period size: 43 Copynumber: 7.2 Consensus size: 43
7847855 AGTGGAAGCA
* * * *
7847865 CCGCTAAAGATCAGGGTCTTTAGCGGCG-TTTTTGCGAGAAGCA
1 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTT-CCACAAACG
* * *
7847908 CCGCTAAAGATCAGGGTCTTTAGCGGCG-TTTTTGCGAGAAGCG
1 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTT-CCACAAACG
7847951 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTTCCACAAACG
1 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTTCCACAAACG
* * ** * ***
7847994 CCGCAAAAGACCCTGATCTGTT-GCGGCGCTTCGACCACAAACG
1 CCGCTAAAGATCAGGGTCT-TTAGCGGCGCTTTTTCCACAAACG
* * * ** * *
7848037 CCACTAAATAACCA-AATTTTTAGCGGCGC-TTTCCCTACAAACG
1 CCGCTAAA-GATCAGGGTCTTTAGCGGCGCTTTTTCC-ACAAACG
* * *** * *
7848080 CCACTAAAGGTGTTGGCCTTTAGTGGCGCTTTTTCCACAAACG
1 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTTCCACAAACG
* **** * *
7848123 CCGCTAAAGACCCTTATCTTTAGCGGTGCTTTTAT-CAAAAACG
1 CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTT-TCCACAAACG
7848166 CCGCTAAAG
1 CCGCTAAAG
7848175 GCCAACACCT
Statistics
Matches: 216, Mismatches: 43, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
42 5 0.02
43 195 0.90
44 16 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (43 bp):
CCGCTAAAGATCAGGGTCTTTAGCGGCGCTTTTTCCACAAACG
Found at i:7848187 original size:43 final size:43
Alignment explanation
Indices: 7848096--7848188 Score: 98
Period size: 43 Copynumber: 2.2 Consensus size: 43
7848086 AAGGTGTTGG
* * ***
7848096 CCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 CCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGACCAACA
* * *
7848139 TCTTTAGCGGTGCTTTTAT-CAAAAACGCCGCTAAAGGCCAACA
1 CCTTTAGCGGCGCTTTT-TCCAAAAACGCCGCTAAAGACCAACA
7848182 CCTTTAG
1 CCTTTAG
7848189 TGGCATTTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
43 39 0.98
44 1 0.03
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (43 bp):
CCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGACCAACA
Found at i:7848551 original size:21 final size:21
Alignment explanation
Indices: 7848522--7848634 Score: 109
Period size: 21 Copynumber: 5.4 Consensus size: 21
7848512 TTTGACGCTG
7848522 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCCCTTGCTGCAGC
* **
7848543 CTCTACTTCCCTTGCTATAGC
1 CTCTGCTTCCCTTGCTGCAGC
* *
7848564 CTCTGCTTCCCTTGTTGTAGC
1 CTCTGCTTCCCTTGCTGCAGC
* * * * *
7848585 CTATACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTTGCTGCAGC
* *
7848606 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTTGCTGCAGC
*
7848627 ATCTGCTT
1 CTCTGCTT
7848635 TAAGTTGCTG
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.07, C:0.39, G:0.16, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTTGCTGCAGC
Found at i:7848569 original size:42 final size:42
Alignment explanation
Indices: 7848522--7848623 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
7848512 TTTGACGCTG
* * *
7848522 CTCTGCTTCCCTTGCTGCAGCCTCTACTTCCCTTGCTATAGC
1 CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
* * * * *
7848564 CTCTGCTTCCCTTGTTGTAGCCTATACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
*
7848606 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTTGCTGC
7848624 CGCATCTGCT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.07, C:0.39, G:0.16, T:0.38
Consensus pattern (42 bp):
CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
Found at i:7848698 original size:66 final size:66
Alignment explanation
Indices: 7848605--7848751 Score: 208
Period size: 66 Copynumber: 2.2 Consensus size: 66
7848595 CTCGCTGCCG
* * * *
7848605 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGTTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTACCGCATCTGCTTTAAGTTG-TAGCTAGAGTTCTTCATATCTTT-GTT
7848668 GAA
64 GAA
* *
7848671 CCTCAGCTTCTCTCGCTACTGCATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTACCGCATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTTGTTGA
7848736 A
66 A
7848737 CCTCAGCTTCTCTCG
1 CCTCAGCTTCTCTCG
7848752 ATGTTGCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
65 1 0.01
66 68 0.93
67 4 0.05
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTACCGCATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTTGTTGA
A
Found at i:7848767 original size:66 final size:65
Alignment explanation
Indices: 7848625--7848775 Score: 196
Period size: 66 Copynumber: 2.3 Consensus size: 65
7848615 TCTTGCTGCC
* * *
7848625 GCATCTGCTTTAAGTTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTAC
1 GCATCCGCTTTAAGTTG-TGCTAGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATAC
7848690 T
65 T
* * *
7848691 GCATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGATG
1 GCATCCGCTTTAAGTTGT-GCTAGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATA
*
7848755 TT
64 CT
*
7848757 GCCTCCGCTTTAAGTTGTG
1 GCATCCGCTTTAAGTTGTG
7848776 TAATTTGCTC
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
65 2 0.03
66 70 0.92
67 4 0.05
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.41
Consensus pattern (65 bp):
GCATCCGCTTTAAGTTGTGCTAGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATACT
Found at i:7854190 original size:9 final size:9
Alignment explanation
Indices: 7854141--7854475 Score: 229
Period size: 9 Copynumber: 39.8 Consensus size: 9
7854131 AATTGCACGG
7854141 GTAAGTTAT
1 GTAAGTTAT
7854150 GT-A-TTAT
1 GTAAGTTAT
*
7854157 GTAAGCTAT
1 GTAAGTTAT
*
7854166 GTAAGTTGT
1 GTAAGTTAT
7854175 GT-A-TTAT
1 GTAAGTTAT
7854182 GTAAGTTAT
1 GTAAGTTAT
7854191 -T-A-TTAT
1 GTAAGTTAT
7854197 GTAAGTTAT
1 GTAAGTTAT
*
7854206 GTAAGTAAT
1 GTAAGTTAT
7854215 GT-A-TTAT
1 GTAAGTTAT
*
7854222 GTAAGTTGT
1 GTAAGTTAT
*
7854231 GT-A-TAAT
1 GTAAGTTAT
*
7854238 GTTAGTTAT
1 GTAAGTTAT
**
7854247 CAAAGTTAT
1 GTAAGTTAT
7854256 GT-A-TTAT
1 GTAAGTTAT
7854263 GTAAGTTAT
1 GTAAGTTAT
*
7854272 TTAAGTTAT
1 GTAAGTTAT
*
7854281 GTAAGTTGT
1 GTAAGTTAT
7854290 GT-A-TTAT
1 GTAAGTTAT
7854297 GTAAGTTAT
1 GTAAGTTAT
* *
7854306 GTAGGCTAT
1 GTAAGTTAT
* *
7854315 GTATGTTAA
1 GTAAGTTAT
*
7854324 GTAAGTAAT
1 GTAAGTTAT
7854333 GT-A-TTAT
1 GTAAGTTAT
*
7854340 GTAAGTTGT
1 GTAAGTTAT
*
7854349 GT-A-TAAT
1 GTAAGTTAT
*
7854356 GTTAGTTAT
1 GTAAGTTAT
**
7854365 CAAAGTTAT
1 GTAAGTTAT
7854374 GT-A-TTAT
1 GTAAGTTAT
7854381 GTAAGTTAT
1 GTAAGTTAT
*
7854390 TTAAGTTAT
1 GTAAGTTAT
*
7854399 GTAAGTTGT
1 GTAAGTTAT
7854408 GT-A-TTAT
1 GTAAGTTAT
7854415 GTAAGTTAT
1 GTAAGTTAT
7854424 GT-AGTCTAT
1 GTAAGT-TAT
7854433 GT-A-TTAT
1 GTAAGTTAT
7854440 GTAAGTTAT
1 GTAAGTTAT
*
7854449 -TATGTTATTAT
1 GTAAG---TTAT
7854460 GTAAGTTAT
1 GTAAGTTAT
*
7854469 GCAAGTT
1 GTAAGTT
7854476 TATATATAAG
Statistics
Matches: 252, Mismatches: 44, Indels: 60
0.71 0.12 0.17
Matches are distributed among these distances:
6 4 0.02
7 58 0.23
8 30 0.12
9 153 0.61
11 4 0.02
12 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:7854196 original size:15 final size:16
Alignment explanation
Indices: 7854163--7854469 Score: 149
Period size: 16 Copynumber: 18.8 Consensus size: 16
7854153 TTATGTAAGC
*
7854163 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
7854179 TATGTAAGTTAT-TAT
1 TATGTAAGTTATGTAT
7854194 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
7854212 AATGT-A-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
7854228 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
**
7854244 TATCAAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
7854260 TATGTAAGTTATTTAAGT
1 TATGTAAGTTATGT-A-T
*
7854278 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
*
7854294 TATGTAAGTTATGTAGGC
1 TATGTAAGTTATGTA--T
* *
7854312 TATGTATGTTAAGTAAGT
1 TATGTAAGTTATGT-A-T
*
7854330 AATGT-A-TTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
7854346 TGTGT-A-TAATGTTAGT
1 TATGTAAGTTATG-TA-T
**
7854362 TATCAAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
7854378 TATGTAAGTTATTTAAGT
1 TATGTAAGTTATGT-A-T
*
7854396 TATGTAAGTTGTGTAT
1 TATGTAAGTTATGTAT
7854412 TATGTAAGTTATGTAGT
1 TATGTAAGTTATGTA-T
7854429 CTATGT-A-TTATGTA-
1 -TATGTAAGTTATGTAT
*
7854443 -A-GTTA-TTATGTTAT
1 TATGTAAGTTATG-TAT
7854457 TATGTAAGTTATG
1 TATGTAAGTTATG
7854470 CAAGTTTATA
Statistics
Matches: 231, Mismatches: 36, Indels: 47
0.74 0.11 0.15
Matches are distributed among these distances:
11 2 0.01
12 7 0.03
13 2 0.01
15 16 0.07
16 121 0.52
17 21 0.09
18 61 0.26
19 1 0.00
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:7854225 original size:25 final size:25
Alignment explanation
Indices: 7854147--7854475 Score: 152
Period size: 25 Copynumber: 13.0 Consensus size: 25
7854137 ACGGGTAAGT
*
7854147 TATGTATTATGTAAGCTATGTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
7854172 TGTGTATTATGTAAGTTAT-T-A-T
1 TATGTATTATGTAAGTTATGTAAGT
*
7854194 TATGTAAGTTATGTAAGTAATGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
7854219 TATGTAAGTTGTGT-A-TAATGTTAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
**
7854244 TATCAAAGTTATGT-A-TTATGTAAGT
1 TAT-GTA-TTATGTAAGTTATGTAAGT
* *
7854269 TATTTAAGTTATGTAAGTTGTGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
7854294 TATGTAAGTTATGTAGGCTATGTATGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
* *
7854321 TAAGTAAGTAATGT-A-TTATGTAAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * * **
7854346 TGTGTATAATGTTAGTTATCAAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
7854371 TATGTATTATGTAAGTTATTTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
7854396 TATGTAAGTTGTGT-A-TTATGTAAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
7854421 TATGTAGTCTATGT-A-TTATGTAAGTTAT
1 TATGTA-T-TATGTAAGTTATGTAAG---T
*
7854449 TATGTTATTATGTAAGTTATGCAAGT
1 TATG-TATTATGTAAGTTATGTAAGT
7854475 T
1 T
7854476 TATATATAAG
Statistics
Matches: 246, Mismatches: 36, Indels: 43
0.76 0.11 0.13
Matches are distributed among these distances:
22 5 0.02
23 14 0.06
24 20 0.08
25 156 0.63
26 6 0.02
27 28 0.11
28 7 0.03
29 10 0.04
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (25 bp):
TATGTATTATGTAAGTTATGTAAGT
Found at i:7854279 original size:34 final size:34
Alignment explanation
Indices: 7854241--7854305 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
7854231 GTATAATGTT
7854241 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
1 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
** *
7854275 AGTTATGTAAGTTGTGTATTATGTAAGTTAT
1 AGTTATCAAAGTTATGTATTATGTAAGTTAT
7854306 GTAGGCTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (34 bp):
AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
Found at i:7854316 original size:34 final size:33
Alignment explanation
Indices: 7854249--7854435 Score: 136
Period size: 34 Copynumber: 6.0 Consensus size: 33
7854239 TTAGTTATCA
* * *
7854249 AAGTTATGTATTATGTAAGTTATTTAAGTTATGT
1 AAGTTGTGTATTATGTAAGTTATGT-AGCTATGT
7854283 AAGTTGTGTATTATGTAAGTTATGTAGGCTATGT
1 AAGTTGTGTATTATGTAAGTTATGTA-GCTATGT
* *
7854317 -A--TGT-TA--A-GTAAGTAATGTA-TTATGT
1 AAGTTGTGTATTATGTAAGTTATGTAGCTATGT
* *
7854342 AAGTTGTGTATAATGTTAGTTA--T--C-A---
1 AAGTTGTGTATTATGTAAGTTATGTAGCTATGT
* * *
7854367 AAGTTATGTATTATGTAAGTTATTTAAGTTATGT
1 AAGTTGTGTATTATGTAAGTTATGT-AGCTATGT
7854401 AAGTTGTGTATTATGTAAGTTATGTAGTCTATGT
1 AAGTTGTGTATTATGTAAGTTATGTAG-CTATGT
7854435 A
1 A
7854436 TTATGTAAGT
Statistics
Matches: 120, Mismatches: 15, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
25 24 0.20
26 1 0.01
27 12 0.10
28 5 0.04
29 2 0.02
30 3 0.03
31 5 0.04
32 6 0.05
33 4 0.03
34 58 0.48
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (33 bp):
AAGTTGTGTATTATGTAAGTTATGTAGCTATGT
Found at i:7854349 original size:118 final size:116
Alignment explanation
Indices: 7854146--7854466 Score: 499
Period size: 118 Copynumber: 2.7 Consensus size: 116
7854136 CACGGGTAAG
* * *
7854146 TTATGT-A-TTATGTAAGCTATGTAAGTTGTGTATTATGTAAGTTAT-TA-TTATGTAAGTTATG
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGCTATGT-AGTTATG
7854207 TAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
65 TAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
*
7854259 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTA-GCTATGTA-GTTAT
7854324 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
64 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
7854377 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTA-TTATG
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAG-CTATGTAGTTATG
7854441 TAAGTTATTATGTTATTATGTAAGTT
65 TAAG-TA--ATG-TATTATGTAAGTT
7854467 ATGCAAGTTT
Statistics
Matches: 192, Mismatches: 5, Indels: 15
0.91 0.02 0.07
Matches are distributed among these distances:
113 6 0.03
114 1 0.01
115 36 0.19
116 10 0.05
117 4 0.02
118 119 0.62
119 3 0.02
120 13 0.07
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.48
Consensus pattern (116 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGCTATGTAGTTATGT
AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:7854664 original size:121 final size:121
Alignment explanation
Indices: 7854522--7854954 Score: 760
Period size: 121 Copynumber: 3.6 Consensus size: 121
7854512 TATGTATCTT
* * * * *
7854522 ATTTATAATTATTTTTAAAATTATAAAATTCATTT-CTAATAAAATTGAAATGTAGGATATATAT
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTAC-AATAAAATTGAAATATAGGTTATATAT
7854586 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
65 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
* * *
7854643 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
7854708 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
*
7854764 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTACATATC
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
7854829 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
7854885 ATTTACAATTATTTTTAAAATTATAAAAAATAATTTACAATAAAATTGAAATATAGGTTATATAT
1 ATTTACAATTATTTTTAAAATTAT-AAAAATAATTTACAATAAAATTGAAATATAGGTTATATAT
7854950 CCATA
65 CCATA
7854955 TACTTTAATT
Statistics
Matches: 300, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
121 255 0.85
122 45 0.15
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (121 bp):
ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
Found at i:7854802 original size:31 final size:32
Alignment explanation
Indices: 7854744--7854803 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7854734 AAAATATAGG
*
7854744 TTTTAATATTTAAAAATAACATTTACAATTAT
1 TTTTAAAATTTAAAAATAACATTTACAATTAT
7854776 TTTTAAAATTATAAAAAT-A-ATTTACAAT
1 TTTTAAAATT-TAAAAATAACATTTACAAT
7854804 AAAATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.35
32 10 0.38
33 7 0.27
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (32 bp):
TTTTAAAATTTAAAAATAACATTTACAATTAT
Found at i:7854994 original size:13 final size:13
Alignment explanation
Indices: 7854978--7855069 Score: 91
Period size: 13 Copynumber: 6.9 Consensus size: 13
7854968 GTAAGTCATG
7854978 TATTTAAGTAATA
1 TATTTAAGTAATA
7854991 TATTTAAGTAA-A
1 TATTTAAGTAATA
*
7855003 T-TCTAGTAAGTAATG
1 TAT-T--TAAGTAATA
7855018 TATTTAAGTAATA
1 TATTTAAGTAATA
7855031 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
7855043 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
7855058 TATTTAAGTAAT
1 TATTTAAGTAAT
7855070 GTAAGTTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 7 0.11
13 37 0.57
14 13 0.20
15 6 0.09
16 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:7855011 original size:40 final size:40
Alignment explanation
Indices: 7854961--7855069 Score: 182
Period size: 40 Copynumber: 2.7 Consensus size: 40
7854951 CATATACTTT
*
7854961 AATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTA
1 AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
*
7855001 AATTCTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
1 AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
* *
7855041 AATTTTAGTAATTAATATATTTAAGTAAT
1 AATTTTAGTAAGTAATGTATTTAAGTAAT
7855070 GTAAGTTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (40 bp):
AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
Found at i:7855134 original size:11 final size:11
Alignment explanation
Indices: 7855103--7855135 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
7855093 ATATATTAAT
7855103 AATTCATTGAC
1 AATTCATTGAC
7855114 -ATTCATTGAC
1 AATTCATTGAC
*
7855124 AATTCACTGAC
1 AATTCATTGAC
7855135 A
1 A
7855136 GTCAATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (11 bp):
AATTCATTGAC
Found at i:7859129 original size:22 final size:23
Alignment explanation
Indices: 7859104--7859155 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
7859094 TTAATTGACG
7859104 CCCTAAACCCTAAATC-CCTAAC
1 CCCTAAACCCTAAATCTCCTAAC
* *
7859126 CCCTAACCCCTAAATCTCCTAGC
1 CCCTAAACCCTAAATCTCCTAAC
7859149 CCCTAAA
1 CCCTAAA
7859156 TTTCTAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.33, C:0.46, G:0.02, T:0.19
Consensus pattern (23 bp):
CCCTAAACCCTAAATCTCCTAAC
Found at i:7859151 original size:16 final size:16
Alignment explanation
Indices: 7859127--7859184 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
7859117 ATCCCTAACC
7859127 CCTAACCCCTAAATCT
1 CCTAACCCCTAAATCT
*
7859143 CCTAGCCCCTAAAT-T
1 CCTAACCCCTAAATCT
*
7859158 TCTAACCCCT-AA-CT
1 CCTAACCCCTAAATCT
7859172 CCTAACCCCTAAA
1 CCTAACCCCTAAA
7859185 CCTTATATCC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 12 0.33
15 11 0.31
16 13 0.36
ACGTcount: A:0.31, C:0.43, G:0.02, T:0.24
Consensus pattern (16 bp):
CCTAACCCCTAAATCT
Found at i:7860062 original size:41 final size:42
Alignment explanation
Indices: 7860013--7860164 Score: 107
Period size: 41 Copynumber: 3.7 Consensus size: 42
7860003 TCAACAAAAA
7860013 CGCCGCTAAA-ACCCTAACATTAGCGGCGCTTATCATAGAAT
1 CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
* * * * * * * *
7860054 CGCCGCTAAAAATCTTAACTTTAGTGTCGCTTAT-ATAAAAA
1 CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
* * * * *
7860095 CGCCGCTAGAAGA-CCAAATATTCGCGACGC-T-TCAAAGAAAT
1 CGCCGCTA-AAGACCCTAACATTAGCGGCGCTTATCATAG-AAT
* * *
7860136 CGCCGCTAAATACCTTAACTTTAGCGGCG
1 CGCCGCTAAAGACCCTAACATTAGCGGCG
7860165 GTTGATTAAA
Statistics
Matches: 81, Mismatches: 25, Indels: 10
0.70 0.22 0.09
Matches are distributed among these distances:
39 1 0.01
40 6 0.07
41 53 0.65
42 21 0.26
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
Found at i:7860374 original size:39 final size:38
Alignment explanation
Indices: 7860331--7860420 Score: 101
Period size: 39 Copynumber: 2.3 Consensus size: 38
7860321 TTTTGACAGA
*
7860331 AACGCCGCTAATGCATATTTTCAGCGGTGTTTTCTTAGT-
1 AACGCCGCTAATGCATATTTTCAGCGGCGTTTTC-T-GTC
* * * *
7860370 AACGCCGCGAAAGCTTATTTTTAGCGGCGTTTTCTGTC
1 AACGCCGCTAATGCATATTTTCAGCGGCGTTTTCTGTC
7860408 AAGCGCCGCTAAT
1 AA-CGCCGCTAAT
7860421 TCTTGAATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
37 2 0.05
38 3 0.07
39 37 0.88
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.33
Consensus pattern (38 bp):
AACGCCGCTAATGCATATTTTCAGCGGCGTTTTCTGTC
Found at i:7861488 original size:19 final size:18
Alignment explanation
Indices: 7861451--7861490 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7861441 CATAATGATA
* *
7861451 TATATAATATATTTTTAT
1 TATATAATACATATTTAT
7861469 TATATAATTACATATTTAT
1 TATATAA-TACATATTTAT
7861488 TAT
1 TAT
7861491 TTGGTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATAATACATATTTAT
Found at i:7861823 original size:136 final size:135
Alignment explanation
Indices: 7861563--7861824 Score: 328
Period size: 136 Copynumber: 1.9 Consensus size: 135
7861553 TTAATTAAAA
** *
7861563 TAAAAAAAATTTGAAACAACATGAAATAAAAAATAAAAATGTGCTTAGAAGAGGAATCAAACCTA
1 TAAAAAAAATTTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACCGA
* * ** * ** ** *
7861628 GGACTTAAGGATGAAATCATTATTATTTACCCATCTAACCAAAAGAGCTAATGTATTAAAAATAT
66 GGACTCAAGAACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAATAT
7861693 TTAAT
131 TTAAT
* * *
7861698 TAAAAGAAAGTTTGAAACAACATGAAATAAAAAATACAAATGTGAGTAGGAGAGGAATCAAACCC
1 TAAAA-AAAATTTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAA-CC
* * *
7861763 GA-GACTCAAGAACAAAACCACCAACATTTAACCATCTAACCAAAGGAGCTGATGTTTTAAAA
64 GAGGACTCAAGAACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAA
7861825 GAAAACGCGT
Statistics
Matches: 106, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
135 5 0.05
136 98 0.92
137 3 0.03
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (135 bp):
TAAAAAAAATTTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACCGA
GGACTCAAGAACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAATAT
TTAAT
Found at i:7863996 original size:17 final size:19
Alignment explanation
Indices: 7863959--7863998 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
7863949 GTATATTAAC
*
7863959 TTATAATATATTTTAATTA
1 TTATAATATATTCTAATTA
7863978 TTATAATA-ATTCT-ATTA
1 TTATAATATATTCTAATTA
7863995 TTAT
1 TTAT
7863999 TGTTGCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 4 0.20
19 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATAATATATTCTAATTA
Found at i:7864936 original size:19 final size:21
Alignment explanation
Indices: 7864908--7864956 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7864898 GTTTTTTTAC
*
7864908 TAAAATAATA-CAAAAGAA-A
1 TAAAAAAATACCAAAAGAATA
*
7864927 TAAAAAAATACCAAAATAATA
1 TAAAAAAATACCAAAAGAATA
7864948 TAAAAAAAT
1 TAAAAAAAT
7864957 TATTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 9 0.35
20 7 0.27
21 10 0.38
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.18
Consensus pattern (21 bp):
TAAAAAAATACCAAAAGAATA
Found at i:7866184 original size:11 final size:11
Alignment explanation
Indices: 7866165--7866211 Score: 50
Period size: 10 Copynumber: 4.7 Consensus size: 11
7866155 GTAAATAATT
7866165 TTTTA-TATTA
1 TTTTAGTATTA
7866175 TTTTAGTATT-
1 TTTTAGTATTA
*
7866185 TTTTA-T-TTC
1 TTTTAGTATTA
7866194 TTTT-GTATTA
1 TTTTAGTATTA
7866204 TTTTAGTA
1 TTTTAGTA
7866212 AAAAACCCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
8 2 0.06
9 6 0.19
10 16 0.52
11 7 0.23
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (11 bp):
TTTTAGTATTA
Found at i:7866201 original size:18 final size:20
Alignment explanation
Indices: 7866162--7866208 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
7866152 TTGGTAAATA
7866162 ATTTTTTATATTATTTTAGT
1 ATTTTTTATATTATTTTAGT
*
7866182 ATTTTTTAT-TTCTTTT-GT
1 ATTTTTTATATTATTTTAGT
7866200 ATTATTTTA
1 ATT-TTTTA
7866209 GTAAAAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 9 0.36
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (20 bp):
ATTTTTTATATTATTTTAGT
Found at i:7868808 original size:22 final size:22
Alignment explanation
Indices: 7868773--7868814 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7868763 CTTCTTCACT
7868773 TTTCTTCTTCGATTTTTCGCGA
1 TTTCTTCTTCGATTTTTCGCGA
* *
7868795 TTTCTTGTTGGATTTTTCGC
1 TTTCTTCTTCGATTTTTCGC
7868815 AGTCAATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.19, G:0.17, T:0.57
Consensus pattern (22 bp):
TTTCTTCTTCGATTTTTCGCGA
Found at i:7876179 original size:19 final size:19
Alignment explanation
Indices: 7876152--7876188 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7876142 CAGAAGAGGA
*
7876152 GGGAGAGAAAAGAGGGAAC
1 GGGAAAGAAAAGAGGGAAC
*
7876171 GGGAAAGAAGAGAGGGAA
1 GGGAAAGAAAAGAGGGAA
7876189 GGGGGAGCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.49, T:0.00
Consensus pattern (19 bp):
GGGAAAGAAAAGAGGGAAC
Found at i:7877705 original size:72 final size:72
Alignment explanation
Indices: 7877511--7877760 Score: 382
Period size: 73 Copynumber: 3.5 Consensus size: 72
7877501 ACATGTGAAC
* *
7877511 TGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
7877575 CAGCGTGTCC
63 CAACGTGTCT
*
7877585 T-AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
7877649 ACGTGTCT
65 ACGTGTCT
7877657 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
7877722 TGTGTCT
66 CGTGTCT
7877729 TG-GGCTCAACT-ATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
7877761 TTCTTTCAAA
Statistics
Matches: 166, Mismatches: 7, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
70 21 0.13
71 17 0.10
72 57 0.34
73 70 0.42
74 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:7877773 original size:72 final size:71
Alignment explanation
Indices: 7877514--7877774 Score: 346
Period size: 72 Copynumber: 3.6 Consensus size: 71
7877504 TGTGAACTGA
* * * *
7877514 GGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 GGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTAAAAACAGAAATTGAAATTACCTCAA
* *
7877578 CGTGTCCTA
63 CGTGTCTTG
* *
7877587 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACG
1 GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT-AAAAACAGAAATTGAAATTACCTCAACG
7877652 TGTCTTG
65 TGTCTTG
* *
7877659 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATG
1 -GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATTGAAATTACCTCAACG
7877724 TGTCTTG
65 TGTCTTG
*
7877731 GGCTCAACT-ATTTCTCGCAATATGAGTTGATTCTTTCAAAAACA
1 GGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTT-AAAAACA
7877775 TAATGACGAA
Statistics
Matches: 169, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
70 22 0.13
71 16 0.09
72 68 0.40
73 63 0.37
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (71 bp):
GGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATTGAAATTACCTCAACGT
GTCTTG
Found at i:7877898 original size:71 final size:71
Alignment explanation
Indices: 7877782--7877921 Score: 208
Period size: 71 Copynumber: 2.0 Consensus size: 71
7877772 ACATAATGAC
* * *
7877782 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
7877847 GATTTT
66 GATTTT
* * * **
7877853 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
7877918 GATT
66 GATT
7877922 CTTTCAAAAC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (71 bp):
GAAAACAGAAATGGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTT
Found at i:7877931 original size:158 final size:158
Alignment explanation
Indices: 7877623--7878800 Score: 1356
Period size: 158 Copynumber: 7.5 Consensus size: 158
7877613 GTTGAATTTT
* * * **
7877623 GAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 GAAAA-CAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
** *
7877688 TGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTG-GGCTCAACT-ATTTCTCGCAA
65 TG-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
7877751 TATGAGTTGATTCTTTCAAAAACATAATGAC
129 TATGAGTTGATTCTTTC-AAAACATAATGAC
* * *
7877782 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7877847 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCATTTCTCGCAATA
66 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
7877912 TGAGTTGATTCTTTCAAAACATAATGAC
131 TGAGTTGATTCTTTCAAAACATAATGAC
* * *
7877940 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7878005 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
66 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
7878070 TGAGTTGATTCTTTCAAAACATAATGAC
131 TGAGTTGATTCTTTCAAAACATAATGAC
* * *
7878098 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
7878163 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66 GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
7878228 TGAGTTGATTCTTTCAAAACATAATGAC
131 TGAGTTGATTCTTTCAAAACATAATGAC
* * * *
7878256 GAAAATAGAAAAGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
7878321 GATTTAGAAAACAGACATAAAAACAAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAAC
66 GATTTTGAAAACAG-----------AAATTGAAA-TTACCTC-A-GCGTG-TCCTGAGGCTCAAC
*
7878384 TCACCTT-TCGCAATAT-AGTTGA-T-TTT-------T--T---
116 TCA-TTTCTCGCAATATGAGTTGATTCTTTCAAAACATAATGAC
** * * *
7878412 GAAAGTAGAAATTGAAAATACCTCGGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
** *
7878476 GATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAA
66 GA-TTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
* *
7878541 TATGAGTTGATT-TTTGAAAAACATAA--ATT
129 TATGAGTTGATTCTTT-CAAAACATAATGA-C
* * * *
7878570 G--AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* ** * **
7878633 GATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGC
66 GA--TT-TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGC
7878698 AATATGAGTTGATT-TTT-------T--TGAC
127 AATATGAGTTGATTCTTTCAAAACATAATGAC
* * *
7878720 ---AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7878782 GATTTTGAAAAACA-AAATT
66 GATTTTG-AAAACAGAAATT
7878801 AAAAGGCTTA
Statistics
Matches: 914, Mismatches: 60, Indels: 104
0.85 0.06 0.10
Matches are distributed among these distances:
143 4 0.00
144 24 0.03
145 14 0.02
146 21 0.02
147 6 0.01
149 59 0.06
151 2 0.00
154 1 0.00
155 34 0.04
156 51 0.06
157 77 0.08
158 468 0.51
159 99 0.11
161 1 0.00
168 3 0.00
169 13 0.01
170 9 0.01
171 25 0.03
172 3 0.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (158 bp):
GAAAACAGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
TGAGTTGATTCTTTCAAAACATAATGAC
Found at i:7878056 original size:71 final size:71
Alignment explanation
Indices: 7877940--7878237 Score: 265
Period size: 71 Copynumber: 4.0 Consensus size: 71
7877930 ACATAATGAC
* *
7877940 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7878005 GATTTT
66 GATTTT
* * * **
7878011 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7878076 GATTCTTT
66 GA-T-TTT
* * ** * *
7878084 CAAAACA-TAATGACGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCT
1 GAAAACAGAAATG--G-----A-AAAT---ACCT--C--AGCGTGACCTGAGGCTCAACTCACCT
7878148 CTCGCAATATGAGTTGATTTT
51 CTCGCAATATGAGTTGATTTT
* * * * **
7878169 GAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
7878234 GATT
66 GATT
7878238 CTTTCAAAAC
Statistics
Matches: 179, Mismatches: 30, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
71 99 0.55
72 4 0.02
73 10 0.06
74 1 0.01
75 2 0.01
78 3 0.02
79 2 0.01
80 3 0.02
83 2 0.01
84 1 0.01
85 10 0.06
86 4 0.02
87 38 0.21
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (71 bp):
GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTT
Found at i:7878628 original size:84 final size:75
Alignment explanation
Indices: 7878570--7878792 Score: 301
Period size: 74 Copynumber: 3.0 Consensus size: 75
7878560 AACATAAATT
* *
7878570 GAACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 GAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
7878635 TTTTCTTGAAAA
66 -TTT-TTGAAAA
* *
7878647 G--CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 GAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
***
7878710 TTTTT-TTGA
66 TTTTTGAAAA
* * * *
7878719 CAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA
1 GAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
7878784 -TTTTGAAAA
66 TTTTTGAAAA
7878793 ACAAAATTAA
Statistics
Matches: 129, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
72 1 0.01
73 6 0.05
74 61 0.47
75 60 0.47
77 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (75 bp):
GAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAA
Found at i:7878763 original size:233 final size:227
Alignment explanation
Indices: 7878269--7878802 Score: 715
Period size: 228 Copynumber: 2.3 Consensus size: 227
7878259 AATAGAAAAG
* * * *
7878269 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTAGAAAACA
1 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAA-A
* *
7878334 GACATAAA--AACAAAATTGAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCTTTCGCAA
64 -ACATAAATTAACAAAATTGAAAATGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAA
* **
7878397 TATAGTTGATTTTTTGAAAGTAGAAATTGAAAATACCTCGGCGTGCCCGAGGCTCAACTCACCTC
128 TATAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGTGCCCGAGGCTCAACTCACCTC
7878462 TCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
193 TCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
* *
7878497 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAA
1 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAA
* * **
7878562 CATAAATTGAACAGGAATTGAAAAT-ACCTC-A-ACGTG-TCTTGAGGCTCAACTCACCTCTCGC
65 CATAAATT-AACA-AAATTGAAAATGA-CTCAACACGTGAGC-CAAGGCTCAACTCACCTCTCGC
* **
7878623 AATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACT
126 AATAT-AGTTGATTTT-TTG-AAAGCAGAAATTGAAAATACCTCAACGTG-CCCGAGGCTCAACT
*
7878688 CACCTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATT
187 CACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT
7878730 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAC
1 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAC
7878795 A-AAATTAA
66 ATAAATTAA
7878803 AAGGCTTAAC
Statistics
Matches: 273, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
226 7 0.03
227 2 0.01
228 82 0.30
229 20 0.07
230 17 0.06
231 30 0.11
232 46 0.17
233 63 0.23
234 6 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (227 bp):
GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAC
ATAAATTAACAAAATTGAAAATGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
AGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACGTGCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAACAGAAATT
Found at i:7878774 original size:74 final size:74
Alignment explanation
Indices: 7878571--7878787 Score: 353
Period size: 75 Copynumber: 2.9 Consensus size: 74
7878561 ACATAAATTG
*
7878571 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
7878636 TTTCTTGAA
66 TTTCTTGAA
*
7878645 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
7878710 TTTTTTTGAC
65 TTTTCTTGAA
* * * *
7878720 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
7878785 TTT
66 TTT
7878788 GAAAAACAAA
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
74 63 0.47
75 70 0.53
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTCTTGAA
Found at i:7878933 original size:55 final size:55
Alignment explanation
Indices: 7878851--7878959 Score: 166
Period size: 55 Copynumber: 2.0 Consensus size: 55
7878841 AACATAAACT
**
7878851 AAAATACCTCGGCGTGCCCGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTA
1 AAAATACCTCAACGTGCCCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGATTA
* *
7878906 AAAATACCTCAACGTGTCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
1 AAAATACCTCAACGTGCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
7878960 TTCCTTGGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 48 0.98
56 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (55 bp):
AAAATACCTCAACGTGCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTA
Found at i:7896684 original size:26 final size:26
Alignment explanation
Indices: 7896620--7896677 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
7896610 ACTTTTTTAA
7896620 ATTTTAAAATAAAAAAACTATAAAAATT
1 ATTTTAAAAT--AAAAACTATAAAAATT
7896648 ATTTTAAAATAAAAACTATAAAAA-T
1 ATTTTAAAATAAAAACTATAAAAATT
7896673 ATTTT
1 ATTTT
7896678 TTAAATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
25 6 0.20
26 14 0.47
28 10 0.33
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (26 bp):
ATTTTAAAATAAAAACTATAAAAATT
Found at i:7898292 original size:24 final size:26
Alignment explanation
Indices: 7898265--7898322 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
7898255 TTTTTCATCT
7898265 CAATTTTA-CT-CAGTAAAATTTTGA
1 CAATTTTACCTCCAGTAAAATTTTGA
*
7898289 CAATTTTACCTCCGGTAAAATTTTGA
1 CAATTTTACCTCCAGTAAAATTTTGA
*
7898315 CGATTTTA
1 CAATTTTA
7898323 TCCCTAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 8 0.27
25 2 0.07
26 20 0.67
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (26 bp):
CAATTTTACCTCCAGTAAAATTTTGA
Found at i:7898333 original size:26 final size:26
Alignment explanation
Indices: 7898265--7898337 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
7898255 TTTTTCATCT
*
7898265 CAATTTTA-CT-CAGTAAAATTTTGA
1 CAATTTTACCTCCAATAAAATTTTGA
**
7898289 CAATTTTACCTCCGGTAAAATTTTGA
1 CAATTTTACCTCCAATAAAATTTTGA
* *
7898315 CGATTTTATCC-CTAATAAAATTT
1 CAATTTTA-CCTCCAATAAAATTT
7898338 CGAGAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 8 0.20
25 2 0.05
26 29 0.71
27 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.41
Consensus pattern (26 bp):
CAATTTTACCTCCAATAAAATTTTGA
Found at i:7900634 original size:19 final size:19
Alignment explanation
Indices: 7900610--7900648 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7900600 GAACCGCTGC
7900610 AATGTATAATAATATGTGA
1 AATGTATAATAATATGTGA
7900629 AATGTATAATAATATGTGA
1 AATGTATAATAATATGTGA
7900648 A
1 A
7900649 TTGACTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (19 bp):
AATGTATAATAATATGTGA
Found at i:7902639 original size:48 final size:48
Alignment explanation
Indices: 7902569--7902661 Score: 132
Period size: 48 Copynumber: 1.9 Consensus size: 48
7902559 GAAGGATTTG
* * *
7902569 AAAGAGTGAGTTAATATAACTCTATATGTGATATATGTTATGTATTGA
1 AAAGAGTAAGTTAATATAACTCTATATATGATATATGTTACGTATTGA
* * *
7902617 AAAGAGTAAGTTAATATGACTCTGTATATGTTATATGTTACGTAT
1 AAAGAGTAAGTTAATATAACTCTATATATGATATATGTTACGTAT
7902662 AATTACTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (48 bp):
AAAGAGTAAGTTAATATAACTCTATATATGATATATGTTACGTATTGA
Found at i:7930680 original size:9 final size:9
Alignment explanation
Indices: 7930666--7930711 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
7930656 TATAGTTTGA
7930666 TATTCGAAT
1 TATTCGAAT
*
7930675 TATTCGAGT
1 TATTCGAAT
*
7930684 TATTTGAAT
1 TATTCGAAT
*
7930693 TATTCGAGT
1 TATTCGAAT
7930702 TATTCGAAT
1 TATTCGAAT
7930711 T
1 T
7930712 CAAAAACTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7930692 original size:18 final size:18
Alignment explanation
Indices: 7930666--7930711 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
7930656 TATAGTTTGA
7930666 TATTCGAATTATTCGAGT
1 TATTCGAATTATTCGAGT
*
7930684 TATTTGAATTATTCGAGT
1 TATTCGAATTATTCGAGT
7930702 TATTCGAATT
1 TATTCGAATT
7930712 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (18 bp):
TATTCGAATTATTCGAGT
Found at i:7933176 original size:42 final size:42
Alignment explanation
Indices: 7933108--7934056 Score: 1036
Period size: 42 Copynumber: 22.6 Consensus size: 42
7933098 TTCAGGTTTA
* * * * *
7933108 TACTTCGGTATATTCGATAATGCACTTATGTGCTAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7933150 TACTTTGGTATATCCGATGATACACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7933192 TACTTCGGTATATCTGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** * *
7933234 TACTTCGGTATGTCTAATTATGCACTTACTTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
** *
7933276 TACTTCGGTATATTTGATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7933318 TACTTCGGTATGTCTGATGATGTATTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
7933360 TACTTTGGTATGTCTGATGATGTATTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * **
7933402 TACTTCGGTATATCCGATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
7933444 TACTTTGGTATATTCGATAATGCACTTATGTGCCAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7933486 TACTTTGGTATATTCGATGATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7933528 TACTTCGGTATGTTCGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** *
7933570 TACTTCGGTATGTCTAATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7933612 TACTTCGGTATGTCCGATGATGCACTTACGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7933654 TACTTCGGTATGTCCGATGATGCATTTATGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * **
7933696 TAATTCGGTTTATCCGATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * ** * * * *
7933738 TACTTCGATATGTTTGATTATGCATTTGCTTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7933780 TACTTCGGTATATTCGATGATGCACTTACCTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * **
7933822 TACTTCGATATGTCCGATGATGCACTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
7933864 TACTTTGGTATATTCAATGATGCACTTGCGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * * **
7933906 TACTTCGGTATGTCTGATAATACATTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7933948 TACTTCGGTATGTCCAATGATACACTTACGTGCCAATATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7933990 TACTTCAGTATATCTGATGATGCACTTACATGCCAGTATAAT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7934032 TGCTTTGGT-TCATCTGATGATGCAC
1 TACTTCGGTAT-ATCCGATGATGCAC
7934057 CTTGTGTGCC
Statistics
Matches: 773, Mismatches: 133, Indels: 2
0.85 0.15 0.00
Matches are distributed among these distances:
41 1 0.00
42 772 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (42 bp):
TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
Found at i:7940373 original size:6 final size:6
Alignment explanation
Indices: 7940359--7940400 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
7940349 TCAACTAGAG
* * *
7940359 ATGGAA ATGGGA ATGGGA ATGGGA ATGGAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
7940401 GTGTTCGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (6 bp):
ATGGAA
Found at i:7940379 original size:12 final size:12
Alignment explanation
Indices: 7940359--7940400 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
7940349 TCAACTAGAG
7940359 ATGGAAATGGGA
1 ATGGAAATGGGA
*
7940371 ATGGGAATGGGA
1 ATGGAAATGGGA
*
7940383 ATGGAAATGGAA
1 ATGGAAATGGGA
7940395 ATGGAA
1 ATGGAA
7940401 GTGTTCGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (12 bp):
ATGGAAATGGGA
Found at i:7945315 original size:29 final size:31
Alignment explanation
Indices: 7945270--7945327 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7945260 AATTTAGGGT
7945270 GTGTTTAATAAATTA-TTTAATATTTTAAAC
1 GTGTTTAATAAATTATTTTAATATTTTAAAC
* *
7945300 GTGTTTGAT-AATTATTTTAATTTTTTAA
1 GTGTTTAATAAATTATTTTAATATTTTAA
7945328 TTTAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (31 bp):
GTGTTTAATAAATTATTTTAATATTTTAAAC
Found at i:7949605 original size:37 final size:38
Alignment explanation
Indices: 7949542--7949616 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
7949532 GCTCCTATTT
**
7949542 AAAAGAAATAAGGATGATGTTGAATCACAGTTTCATAC
1 AAAAGAAATAAGGATGATCATGAATCACAGTTTCATAC
*
7949580 AAAA-AAATAAGGATGA-CATGAAATCACATTTTCATAC
1 AAAAGAAATAAGGATGATCATG-AATCACAGTTTCATAC
7949617 CGTCTCTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 2 0.06
37 27 0.82
38 4 0.12
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (38 bp):
AAAAGAAATAAGGATGATCATGAATCACAGTTTCATAC
Found at i:7950486 original size:17 final size:18
Alignment explanation
Indices: 7950450--7950488 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7950440 ACTCACGTTG
7950450 CTTCTCTTATTTCTTTTT
1 CTTCTCTTATTTCTTTTT
7950468 CTTCTCATT-TTTC-TTTT
1 CTTCTC-TTATTTCTTTTT
7950485 CTTC
1 CTTC
7950489 ATTACAACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 10 0.50
19 2 0.10
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (18 bp):
CTTCTCTTATTTCTTTTT
Found at i:7954875 original size:12 final size:13
Alignment explanation
Indices: 7954858--7954894 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
7954848 GAACCGGACA
7954858 CGAACCGAA-CTC
1 CGAACCGAAGCTC
7954870 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
7954882 CGAACCGTAGCTC
1 CGAACCGAAGCTC
7954895 TGATACCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:7955100 original size:17 final size:18
Alignment explanation
Indices: 7955064--7955102 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7955054 ACTCACGTTG
7955064 CTTCTCTTATTTCTTTTT
1 CTTCTCTTATTTCTTTTT
7955082 CTTCTCATT-TTTC-TTTT
1 CTTCTC-TTATTTCTTTTT
7955099 CTTC
1 CTTC
7955103 ATTACAACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 8 0.40
18 10 0.50
19 2 0.10
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (18 bp):
CTTCTCTTATTTCTTTTT
Found at i:7965402 original size:180 final size:180
Alignment explanation
Indices: 7965098--7965463 Score: 633
Period size: 180 Copynumber: 2.0 Consensus size: 180
7965088 TTTTAGGACT
* *
7965098 CAAAATATGTTAGATTATCATTCAAAAACTTCATATAATGCACGACTATATCCATCTAAGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGACTATATCCATCTAAGAAAGA
7965163 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
*
7965228 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCATTCTATAAC
131 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATAAC
* * *
7965278 CGAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGACTATATCCATCTAAGAAAGA
* * *
7965343 TCATCTCGAGGTACAAAATGATATTAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
* *
7965408 ACAACAAAAATCCATATGGTTCTAAATCTATGTACAAGCCACTCTATTAC
131 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATAAC
7965458 CAAAAT
1 CAAAAT
7965464 CTAAGTTCCA
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
180 174 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (180 bp):
CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGACTATATCCATCTAAGAAAGA
TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATAAC
Found at i:7966259 original size:44 final size:44
Alignment explanation
Indices: 7966161--7966365 Score: 214
Period size: 44 Copynumber: 4.6 Consensus size: 44
7966151 CATCGTGGCG
* * * **
7966161 AATCTTATCCCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAC-
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACT
** * *
7966204 AAGTCAGATCTCCCTGAAGTTGCAGTGGGGCAGATTGAAGATACT
1 AA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACT
* * * * *
7966249 AATCTTATCTCCCTGATGTTACAGTGTAGCAAATTGAAGATACT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACT
* * *
7966293 AATTTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATA-CT
* *
7966338 AATCTCATTTCCCTAAAGTTGCAGTGGA
1 AATCTTATCTCCCTAAAGTTGCAGTGGA
7966366 ACCGATTAAA
Statistics
Matches: 131, Mismatches: 28, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
43 2 0.02
44 102 0.78
45 27 0.21
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATACT
Found at i:7966571 original size:146 final size:147
Alignment explanation
Indices: 7966297--7966665 Score: 467
Period size: 146 Copynumber: 2.5 Consensus size: 147
7966287 GATACTAATT
* * * *
7966297 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTAAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTAATTTCCCTGAAGTTGCAG
* * * **
7966362 TGGAACCGATTAAAGCTACAAGTCACGAATCCTATACCTCTAAAGTTGTAGTAGGTCGAATTAAA
66 TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAGGAGAACGAATTAAA
* *
7966427 TCTACCA-TGACAAATC
131 GCTACAAGTGACAAATC
** * * *
7966443 TTATCTCCCTGAAGTTGCAGTGGAGCATCTTGAAGATAGCAAATCTTATTTCCTTGAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTAATTTCCCTGAAGTTGCAG
* * *
7966508 TAGAACAGATTAAAGCTACAAGTCATAAATCTTATACCTCTAAAGTTGTAGCGA-AAC-AGATTA
66 TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAG-GAGAACGA-ATTA
*
7966571 AAGCTACAAGTTACAAATC
129 AAGCTACAAGTGACAAATC
* * * * *
7966590 TTATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGAT-GCGAGTCTAATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTAATTTCCCTGAAGTTGCAG
7966654 TGGAACAGATTA
66 TGGAACAGATTA
7966666 TAGATGCGAG
Statistics
Matches: 190, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
145 1 0.01
146 147 0.77
147 42 0.22
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (147 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTAATTTCCCTGAAGTTGCAG
TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAGGAGAACGAATTAAA
GCTACAAGTGACAAATC
Found at i:7966619 original size:51 final size:50
Alignment explanation
Indices: 7966297--7966620 Score: 176
Period size: 51 Copynumber: 6.6 Consensus size: 50
7966287 GATACTAATT
* * * *
7966297 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAG--A-TAG--CAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
* * * * * *
7966342 TCATTTCCCTAAAGTTGCAGTGGAACCGATTAAAGCTACAAGTCACGAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-ACAAATC
* * * * * *
7966393 CTATAC-CTCTAAAGTTGTAGTAGG-TC-GAATTAAATCTACCA-TGACAAATC
1 TTAT-CTCCCTGAAGTTGTAGT-GGAACAG-ATTAAAGCTACAAGT-ACAAATC
* * ** * *
7966443 TTATCTCCCTGAAGTTGCAGTGGAGCATCTTGAAG--A-TAG--CAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
* * * *
7966488 TTATTTCCTTGAAGTTGTAGTAGAACAGATTAAAGCTACAAGTCATAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-ACAAATC
* * * *
7966539 TTATAC-CTCTAAAGTTGTAGCGAAACAGATTAAAGCTACAAGTTACAAATC
1 TTAT-CTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAG-TACAAATC
*
7966590 TTATCTCCCTGAAGTT-TCAGTGGAGCAGATT
1 TTATCTCCCTGAAGTTGT-AGTGGAACAGATT
7966621 GTAGATGCGA
Statistics
Matches: 205, Mismatches: 51, Indels: 40
0.69 0.17 0.14
Matches are distributed among these distances:
45 62 0.30
47 3 0.01
48 5 0.02
49 3 0.01
50 30 0.15
51 99 0.48
52 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (50 bp):
TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
Found at i:7966655 original size:44 final size:44
Alignment explanation
Indices: 7966592--7966707 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
7966582 TACAAATCTT
* *
7966592 ATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGATGCGAGTCTA
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTATAGATGCGAGTCTA
* *
7966636 ATCTCCCTGAAGTTGCAGTGGAACAGATTATAGATGCGAGTCTA
1 ATCTCCCTGAAGTTACAGTGGAGCAGATTATAGATGCGAGTCTA
* ** * *
7966680 GTCTCATTGAAGTTATAGTGGAGTAGAT
1 ATCTCCCTGAAGTTACAGTGGAGCAGAT
7966708 CGAAGCACTA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGAAGTTACAGTGGAGCAGATTATAGATGCGAGTCTA
Found at i:7968986 original size:21 final size:21
Alignment explanation
Indices: 7968962--7969001 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7968952 CGAATATCCT
* *
7968962 TTTAAAATCAAAATAATAAGA
1 TTTAAAATAAAAAAAATAAGA
7968983 TTTAAAATAAAAAAAATAA
1 TTTAAAATAAAAAAAATAA
7969002 AGGCAAGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
TTTAAAATAAAAAAAATAAGA
Found at i:7969627 original size:22 final size:23
Alignment explanation
Indices: 7969602--7969644 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7969592 AGAAATATAC
*
7969602 ATGGGC-AAAGTTAAAATTTTGG
1 ATGGGCTAAAATTAAAATTTTGG
*
7969624 ATGGGCTAAAATTAAATTTTT
1 ATGGGCTAAAATTAAAATTTT
7969645 ATCAAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (23 bp):
ATGGGCTAAAATTAAAATTTTGG
Found at i:7979390 original size:12 final size:14
Alignment explanation
Indices: 7979361--7979392 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7979351 GCGTTTGTTG
7979361 ATATATATTTAAAT
1 ATATATATTTAAAT
*
7979375 ATATATATTTGAAT
1 ATATATATTTAAAT
7979389 ATAT
1 ATAT
7979393 TGGTACTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
ATATATATTTAAAT
Found at i:7981381 original size:18 final size:17
Alignment explanation
Indices: 7981349--7981382 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7981339 GTGCAAAATG
*
7981349 TAATTTTATTTTTATAT
1 TAATTTTAATTTTATAT
7981366 TAATTTATAATTTTATA
1 TAATTT-TAATTTTATA
7981383 ATTTTTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TAATTTTAATTTTATAT
Found at i:7981714 original size:21 final size:21
Alignment explanation
Indices: 7981690--7981729 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7981680 AGGGATATAT
7981690 ATAAT-TAATTCAAGTATTAAA
1 ATAATATAA-TCAAGTATTAAA
*
7981711 ATAATATAATCATGTATTA
1 ATAATATAATCAAGTATTA
7981730 TTACATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
ATAATATAATCAAGTATTAAA
Found at i:7983759 original size:47 final size:47
Alignment explanation
Indices: 7983680--7983850 Score: 236
Period size: 47 Copynumber: 3.6 Consensus size: 47
7983670 AGTTGACAGT
* * *
7983680 TCATTTGCTCGACTTGTGGTTTATCTACAATGTATTCTAGTCGGCAG
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
* * *
7983727 TCATATGCTCGACTAGTGGTTTATCCATAATGTATTCTAATTGGCAG
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
* * * *
7983774 TCATTTGCTCAACTAGTGGTTTATCCACAACGTATTTTAGTCGGCA-
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
7983820 TCCATATGCTCGACTAGTGGTTTATCCACAA
1 T-CATATGCTCGACTAGTGGTTTATCCACAA
7983851 CATATTACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.01
47 107 0.99
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (47 bp):
TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
Found at i:7984581 original size:15 final size:17
Alignment explanation
Indices: 7984561--7984593 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
7984551 AACAGAGCAG
7984561 AAAAGAA-AAA-GGAAA
1 AAAAGAATAAAGGGAAA
7984576 AAAAGAATAAAGGGAAA
1 AAAAGAATAAAGGGAAA
7984593 A
1 A
7984594 TTAGGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAGAATAAAGGGAAA
Found at i:7985647 original size:45 final size:45
Alignment explanation
Indices: 7985575--7985675 Score: 143
Period size: 45 Copynumber: 2.2 Consensus size: 45
7985565 ATATGCCGAC
* *
7985575 TACTGTTACTGTTACCGATTCGACACTTTGTGTGTTGAATATTGT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTTGAATACTGT
*
7985620 TA-TCGTTACTGTTATAGATTC-AGCACTTTGTGTGTTGAATACTGT
1 TACT-GTTACTGTTACAGATTCGA-CACTTTGTGTGTTGAATACTGT
7985665 TACTGTTACTG
1 TACTGTTACTG
7985676 CTACCGTTAC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
44 2 0.04
45 47 0.94
46 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.45
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGACACTTTGTGTGTTGAATACTGT
Found at i:7987501 original size:15 final size:16
Alignment explanation
Indices: 7987481--7987511 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7987471 GTATGAATAT
7987481 ATATATAT-TATAAAA
1 ATATATATGTATAAAA
7987496 ATATATATGTATAAAA
1 ATATATATGTATAAAA
7987512 TGTAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATATATATGTATAAAA
Found at i:7989610 original size:31 final size:32
Alignment explanation
Indices: 7989551--7989618 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
7989541 TACTCCACTA
* *
7989551 CTACTTAGGGAGACAAGGCTGAGGTCTTCGAT
1 CTACTCAGGGAGACAAGGCTGAGATCTTCGAT
7989583 -TACTCAGGGAGACAAGGCTG-GTATCTTCGAT
1 CTACTCAGGGAGACAAGGCTGAG-ATCTTCGAT
7989614 CTACT
1 CTACT
7989619 TCGCTGCCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 1 0.03
31 27 0.84
32 4 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (32 bp):
CTACTCAGGGAGACAAGGCTGAGATCTTCGAT
Found at i:7989642 original size:44 final size:44
Alignment explanation
Indices: 7989587--7989817 Score: 142
Period size: 44 Copynumber: 5.2 Consensus size: 44
7989577 TTCGATTACT
* *
7989587 CAGGGAGACAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATA
1 CAGGAAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCCAATA
* * * * * * *****
7989631 CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCT-
1 CAGGAAGACAAG-GCTGGTATCTTCAATCTACTTCGCTGCCAATA
*
7989675 CAGGGAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCCAATA
1 CAGGAAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCCAATA
* * * * * * * * * ***
7989719 CAAGAAGAAAAGATCTGCTATTTTCAACCTACTCCACTACTGCT-
1 CAGGAAGACAAG-GCTGGTATCTTCAATCTACTTCGCTGCCAATA
* * * * *
7989763 TAGGGAGACAAGGCTGGTATCTTCGATTTACTTCGCTGCCAACA
1 CAGGAAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCCAATA
*
7989807 CAGGAAAACAA
1 CAGGAAGACAA
7989818 AATTTGCTAT
Statistics
Matches: 125, Mismatches: 58, Indels: 8
0.65 0.30 0.04
Matches are distributed among these distances:
43 38 0.30
44 47 0.38
45 40 0.32
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
CAGGAAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCCAATA
Found at i:7989698 original size:119 final size:119
Alignment explanation
Indices: 7989477--7989698 Score: 338
Period size: 119 Copynumber: 1.9 Consensus size: 119
7989467 TCAAGGTGAT
* * * *
7989477 AAGGCTGGTGTCCTCGATCTGCTTCGCTGCCAGTACAGGAAGACAAAATTTGCTATTTTCAACCT
1 AAGGCTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGCTATTTTCAACCT
* *
7989542 ACTCCACTACTACTTAGGGAGACAAGGCTGAGGTCTTCGATTACTCAGGGAGAC
66 ACTCCACTACTACTCAGGGAGACAAGGCTGAGATCTTCGATTACTCAGGGAGAC
* *
7989596 AAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCT
1 AAGGCTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGCTATTTTCAACCT
* *
7989661 ACTCCACTATTGCTCAGGGAGACAAGGCTG-GTATCTTC
66 ACTCCACTACTACTCAGGGAGACAAGGCTGAG-ATCTTC
7989699 AATCTACTTC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
118 1 0.01
119 91 0.99
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (119 bp):
AAGGCTGGTATCCTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGCTATTTTCAACCT
ACTCCACTACTACTCAGGGAGACAAGGCTGAGATCTTCGATTACTCAGGGAGAC
Found at i:7989706 original size:43 final size:43
Alignment explanation
Indices: 7989584--7989786 Score: 127
Period size: 45 Copynumber: 4.6 Consensus size: 43
7989574 GTCTTCGATT
* * * *
7989584 ACTCAGGGAGACAAGGCTGGTATCTTCGATCTACTTCGCTGCC
1 ACTCAGGGAGACAAGGCTGGTATCTTCAATCTACTCCACTACC
* * * * * * **
7989627 AATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTATT
1 ACT-CAGGGAGACAAG-GCTGGTATCTTCAATCTACTCCACTACC
* * * *
7989672 GCTCAGGGAGACAAGGCTGGTATCTTCAATCTACTTCGCTGCC
1 ACTCAGGGAGACAAGGCTGGTATCTTCAATCTACTCCACTACC
* * * * * * * * *
7989715 AATACAAGAAGAAAAGATCTGCTATTTTCAACCTACTCCACTACT
1 ACT-CAGGGAGACAAG-GCTGGTATCTTCAATCTACTCCACTACC
* *
7989760 GCTTAGGGAGACAAGGCTGGTATCTTC
1 ACTCAGGGAGACAAGGCTGGTATCTTC
7989787 GATTTACTTC
Statistics
Matches: 110, Mismatches: 46, Indels: 8
0.67 0.28 0.05
Matches are distributed among these distances:
43 31 0.28
44 39 0.35
45 40 0.36
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ACTCAGGGAGACAAGGCTGGTATCTTCAATCTACTCCACTACC
Found at i:7989734 original size:88 final size:88
Alignment explanation
Indices: 7989587--7990227 Score: 957
Period size: 88 Copynumber: 7.3 Consensus size: 88
7989577 TTCGATTACT
* *
7989587 CAGGGAGACAAGGCTG-GTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
1 CAGGGAGACAAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTA
* *
7989651 TTTTCAACCTACTCCACTATTGCT
65 TTTTCAACCTACTCCACTACTGCC
* * * * *
7989675 CAGGGAGACAAGGCTG-GTATCTTCAATCTACTTCGCTGCCAATACAAGAAGAAAAGATCTGCTA
1 CAGGGAGACAAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTA
*
7989739 TTTTCAACCTACTCCACTACTGCT
65 TTTTCAACCTACTCCACTACTGCC
* * * * * *
7989763 TAGGGAGACAAGGCTG-GTATCTTCGATTTACTTCGCTGCCAACACAGGAAAACAAAATTTGCTA
1 CAGGGAGACAAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTA
7989827 TTTTCAACCTACTCCACTACTGCC
65 TTTTCAACCTACTCCACTACTGCC
* * * *
7989851 TAGGGAGACACGGCTGAGGTCTTTGATCTATTTCGCTGCCAACACAGGAAGACAAGATCTGCTA-
1 CAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTAT
7989915 TTTCAACCTACTCCACTACTGCC
66 TTTCAACCTACTCCACTACTGCC
* *
7989938 TAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGAGAAGATCTGCTAT
1 CAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTAT
7990003 TTTCAACCTACTCCACTACTGCC
66 TTTCAACCTACTCCACTACTGCC
* * * *
7990026 CAGGGAGACAAGGCTGAGGTCTTCAATCTATTTCGCTACCAACACATGAAGACAAGATCTGCTAT
1 CAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTAT
7990091 TTTCAACCTACTCCACTACTGCC
66 TTTCAACCTACTCCACTACTGCC
* *
7990114 CAAGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCTAACACAGGAAGACAAGATCTGCTAT
1 CAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTAT
*
7990179 TTTCAACCTACTCCACTACTACC
66 TTTCAACCTACTCCACTACTGCC
*
7990202 CAGGGAGACAAGGCTGAAGTCTTCGA
1 CAGGGAGACAAGGCTGAGGTCTTCGA
7990228 CTTGTTCTTT
Statistics
Matches: 510, Mismatches: 41, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
87 83 0.16
88 426 0.84
89 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (88 bp):
CAGGGAGACAAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTAT
TTTCAACCTACTCCACTACTGCC
Found at i:7990123 original size:44 final size:44
Alignment explanation
Indices: 7989900--7990213 Score: 140
Period size: 43 Copynumber: 7.2 Consensus size: 44
7989890 CAACACAGGA
* *
7989900 AGACAAGATCTGCTA-TTTCAACCTACTCCACTACTGCCTAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
* *** * * * * *
7989943 AGACAAG-GCTGAGGTCTTCGATCTACT--TC-GCTGCCAACACAGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCC--CA-AGG
* *
7989986 AAGAGAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAGGG
1 -AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
* *** * * * * * ** * * *
7990031 AGACAAG-GCTGAGGTCTTCAATCTATTTCGCTACCAACACATGA
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTA-CTGCCCAAGG
7990075 AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
* *** * * * * * * **
7990119 AGACAAG-GCTGAGGTCTTCGATCTACTTCGCTGCT-AACACAGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCA-AGG
* *
7990162 AAGACAAGATCTGCTATTTTCAACCTACTCCACTACTACCCAGGG
1 -AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
7990207 AGACAAG
1 AGACAAG
7990214 GCTGAAGTCT
Statistics
Matches: 180, Mismatches: 76, Indels: 29
0.63 0.27 0.10
Matches are distributed among these distances:
40 5 0.03
41 1 0.01
42 6 0.03
43 56 0.31
44 50 0.28
45 52 0.29
46 4 0.02
47 1 0.01
48 5 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (44 bp):
AGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCCCAAGG
Found at i:7991490 original size:15 final size:15
Alignment explanation
Indices: 7991470--7991514 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
7991460 CCCTAGCCTC
7991470 TCCATTTTT-ACTTTT
1 TCCATTTTTCA-TTTT
7991485 TCCATTTTTCATTTT
1 TCCATTTTTCATTTT
7991500 T-CA-TTTTCATTTT
1 TCCATTTTTCATTTT
7991513 TC
1 TC
7991515 TGTCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 11 0.39
14 2 0.07
15 14 0.50
16 1 0.04
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (15 bp):
TCCATTTTTCATTTT
Found at i:7991492 original size:7 final size:7
Alignment explanation
Indices: 7991472--7991514 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
7991462 CTAGCCTCTC
7991472 CATTTTT
1 CATTTTT
7991479 -ACTTTTT
1 CA-TTTTT
7991486 CCATTTTT
1 -CATTTTT
7991494 CATTTTT
1 CATTTTT
7991501 CA-TTTT
1 CATTTTT
7991507 CATTTTT
1 CATTTTT
7991514 C
1 C
7991515 TGTCATTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
6 7 0.22
7 19 0.59
8 5 0.16
9 1 0.03
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:7991538 original size:13 final size:12
Alignment explanation
Indices: 7991491--7991537 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
7991481 TTTTTCCATT
7991491 TTTCATTTTTCA
1 TTTCATTTTTCA
7991503 TTTTCATTTTTC-
1 -TTTCATTTTTCA
*
7991515 TGTCATTTTTTCA
1 TTTCA-TTTTTCA
7991528 TTTCATTTTT
1 TTTCATTTTT
7991538 TTACGACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 4 0.13
12 11 0.37
13 15 0.50
ACGTcount: A:0.13, C:0.15, G:0.02, T:0.70
Consensus pattern (12 bp):
TTTCATTTTTCA
Found at i:7992127 original size:54 final size:53
Alignment explanation
Indices: 7992012--7992158 Score: 172
Period size: 54 Copynumber: 2.8 Consensus size: 53
7992002 GAGGTTTTTG
* * *
7992012 TTTCTTTTTGTTTTTGGTTTTTGTTCCTATTTTTATTTTTCTCTTTCTTTTCT
1 TTTCTTTTTGTTTTTGTTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
*
7992065 TCTT-TTTTTGTTTTTTGTTTTTTGTTCCTATTTTTCTTTTTCTCTTCCTTTTAT
1 T-TTCTTTTTG-TTTTTGTTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
* * * **
7992119 TTTCTTTTTCCTTTTTATTTTTTTTTTGT-TTTTTATTTTT
1 TTTCTTTTT-GTTTTTGTTTTTTGTTCCTATTTTTATTTTT
7992159 TTGGATTGAA
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
53 19 0.24
54 61 0.76
ACGTcount: A:0.04, C:0.12, G:0.05, T:0.78
Consensus pattern (53 bp):
TTTCTTTTTGTTTTTGTTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
Found at i:7992129 original size:17 final size:17
Alignment explanation
Indices: 7992041--7992160 Score: 68
Period size: 18 Copynumber: 6.8 Consensus size: 17
7992031 TTTGTTCCTA
7992041 TTTTTATTTTTCTCTTT-C
1 TTTTTATTTTT-T-TTTCC
* **
7992059 TTTTCT-TCTTTTTTTGT
1 TTTT-TATTTTTTTTTCC
* *
7992076 TTTTTGTTTTTTGTTCC
1 TTTTTATTTTTTTTTCC
7992093 TATTTT-TCTTTTTCTCTTCC
1 T-TTTTAT-TTTTT-T-TTCC
7992113 -TTTTATTTTCTTTTTCC
1 TTTTTATTTT-TTTTTCC
**
7992130 TTTTTATTTTTTTTTTGT
1 TTTTTA-TTTTTTTTTCC
7992148 TTTTTATTTTTTT
1 TTTTTATTTTTTT
7992161 GGATTGAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 23
0.72 0.08 0.20
Matches are distributed among these distances:
16 4 0.05
17 25 0.30
18 41 0.50
19 8 0.10
20 4 0.05
ACGTcount: A:0.04, C:0.12, G:0.03, T:0.80
Consensus pattern (17 bp):
TTTTTATTTTTTTTTCC
Found at i:7992159 original size:18 final size:18
Alignment explanation
Indices: 7992082--7992160 Score: 72
Period size: 18 Copynumber: 4.3 Consensus size: 18
7992072 TTGTTTTTTG
*
7992082 TTTTTTGTTCCTATTTT-T
1 TTTTTTTTTCCT-TTTTAT
*
7992100 CTTTTTCTCTTCC-TTTTAT
1 -TTTTT-TTTTCCTTTTTAT
*
7992119 TTTCTTTTTCCTTTTTAT
1 TTTTTTTTTCCTTTTTAT
**
7992137 TTTTTTTTTGTTTTTTAT
1 TTTTTTTTTCCTTTTTAT
7992155 TTTTTT
1 TTTTTT
7992161 GGATTGAATC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
17 5 0.10
18 35 0.69
19 6 0.12
20 5 0.10
ACGTcount: A:0.05, C:0.13, G:0.03, T:0.80
Consensus pattern (18 bp):
TTTTTTTTTCCTTTTTAT
Found at i:7996568 original size:17 final size:18
Alignment explanation
Indices: 7996546--7996581 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
7996536 ATGGTGTATG
7996546 AATATATATAT-TATAAA
1 AATATATATATGTATAAA
7996563 AATATATATATGTATAAA
1 AATATATATATGTATAAA
7996581 A
1 A
7996582 TGTAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
AATATATATATGTATAAA
Found at i:7996815 original size:18 final size:17
Alignment explanation
Indices: 7996770--7996817 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
7996760 TAAGTATAAT
7996770 AATAATATAATAACAAC
1 AATAATATAATAACAAC
* *
7996787 AATCATAATAATAATAAC
1 AATAAT-ATAATAACAAC
7996805 AAATAATATAATA
1 -AATAATATAATA
7996818 TAGTAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (17 bp):
AATAATATAATAACAAC
Found at i:7996815 original size:21 final size:21
Alignment explanation
Indices: 7996765--7996817 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7996755 ATATATAAGT
7996765 ATAATAATAAT-ATAATAACA
1 ATAATAATAATAATAATAACA
* *
7996785 ACAATCATAATAATAATAACAA
1 ATAATAATAATAATAATAAC-A
7996807 ATAAT-ATAATA
1 ATAATAATAATA
7996818 TAGTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 14 0.50
22 5 0.18
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAATAATAATAATAATAACA
Found at i:8000459 original size:128 final size:128
Alignment explanation
Indices: 8000266--8000520 Score: 483
Period size: 128 Copynumber: 2.0 Consensus size: 128
8000256 GATATGTGAC
8000266 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTAAAAAAAAATACAAAATCTAAAACTT
1 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTAAAAAAAAATACAAAATCTAAAACTT
8000331 AATAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTTT
66 AATAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTTT
**
8000394 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
1 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTAAAAAAAAATACAAAATCTAAAACTT
*
8000459 ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
66 AATAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
8000521 ATTTATTTAT
Statistics
Matches: 124, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 124 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (128 bp):
AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTAAAAAAAAATACAAAATCTAAAACTT
AATAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTTT
Found at i:8000617 original size:17 final size:19
Alignment explanation
Indices: 8000597--8000634 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8000587 TTTATAAAAT
8000597 TAAAAA-ATTT-ATGTTTA
1 TAAAAACATTTGATGTTTA
*
8000614 TAAAAACATTTGATTTTTA
1 TAAAAACATTTGATGTTTA
8000633 TA
1 TA
8000635 TTTTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAAAACATTTGATGTTTA
Found at i:8000979 original size:7 final size:7
Alignment explanation
Indices: 8000967--8000991 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8000957 TAGTTGTATG
8000967 TATAAAA
1 TATAAAA
8000974 TATAAAA
1 TATAAAA
8000981 TATAAAA
1 TATAAAA
8000988 TATA
1 TATA
8000992 TATTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
TATAAAA
Found at i:8001439 original size:114 final size:113
Alignment explanation
Indices: 8001240--8001608 Score: 526
Period size: 114 Copynumber: 3.2 Consensus size: 113
8001230 GAAATAAGAA
** * *
8001240 TTAGCGGCGTTTTCCAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTACCGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * *
8001304 TCGGGGATTTTGTGGCGTTTTTAAGAAAGCGCCGCTAATTCTCAAGGCT
66 TC-GGGATTTAGTGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
8001353 TTAGCGGCGTTTTTGAGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
8001418 TCGTGGATTTAGCGGTGTTTTTAAGGAAGCGTCGCTAATGCTCAGGGCT
66 TCG-GGATTTAGTGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * *
8001467 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCAATTTT-TGAGTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCC-GTTTTCTGAG-C
* *
8001531 TTTCGGGTGTTTAGTGGTGTTTTTAAGAAAGCGCCTCTAATGCTCAGGGCT
64 TTTCGGG-ATTTAGTGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
8001582 TTAGCGGCGTTTTTGAGAAAGCGCCGC
1 TTAGCGGCGTTTTTGAGAAAGCGCCGC
8001609 TAATGCTCAG
Statistics
Matches: 230, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
113 25 0.11
114 131 0.57
115 74 0.32
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGATTTAGTGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:8001601 original size:41 final size:41
Alignment explanation
Indices: 8001540--8001649 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
8001530 TTTTCGGGTG
* * * * *
8001540 TTTAGTGGTGTTTTTAAGAAAGCGCCTCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
8001581 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
*
8001622 TTTAGCGGCGTTTTTGGGAAAGCGCCGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGC
8001650 AAGAAAAACT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
Found at i:8002027 original size:16 final size:16
Alignment explanation
Indices: 8001999--8002070 Score: 67
Period size: 15 Copynumber: 4.6 Consensus size: 16
8001989 GTTATGCTTT
8001999 AGGGTTAGTGGGATTTA
1 AGGGTTAG-GGGATTTA
* *
8002016 ATGGTTAGGGGATTTG
1 AGGGTTAGGGGATTTA
*
8002032 GGGGTTA-GGGATTTA
1 AGGGTTAGGGGATTTA
* *
8002047 GGGGTTA-GGGTTTTA
1 AGGGTTAGGGGATTTA
*
8002062 ACGGTTAGG
1 AGGGTTAGG
8002071 TTAGAGTTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
15 26 0.57
16 13 0.28
17 7 0.15
ACGTcount: A:0.19, C:0.01, G:0.44, T:0.35
Consensus pattern (16 bp):
AGGGTTAGGGGATTTA
Found at i:8002105 original size:13 final size:14
Alignment explanation
Indices: 8002082--8002117 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8002072 TAGAGTTTAT
8002082 GTTTATATTAATTA
1 GTTTATATTAATTA
8002096 GTTT-TATTAATT-
1 GTTTATATTAATTA
8002108 -TTTATATTAA
1 GTTTATATTAA
8002118 ATATGCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.14
12 6 0.29
13 8 0.38
14 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
GTTTATATTAATTA
Found at i:8002383 original size:36 final size:37
Alignment explanation
Indices: 8002333--8002409 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 37
8002323 TTGTGGTTTA
*
8002333 AGGGTTATGCTTTAGGGGTTAAGGGAATTTAGGGGTT
1 AGGGTTATGCTTTAGGGGTTAAGGGAATTTAAGGGTT
* * **
8002370 AGGGTT-TGTTTTAGGGGTTAGGGGGGTTTAAGGGTT
1 AGGGTTATGCTTTAGGGGTTAAGGGAATTTAAGGGTT
8002406 AGGG
1 AGGG
8002410 GTTTAAGGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
36 29 0.83
37 6 0.17
ACGTcount: A:0.18, C:0.01, G:0.45, T:0.35
Consensus pattern (37 bp):
AGGGTTATGCTTTAGGGGTTAAGGGAATTTAAGGGTT
Found at i:8002421 original size:14 final size:15
Alignment explanation
Indices: 8002392--8002455 Score: 69
Period size: 15 Copynumber: 4.3 Consensus size: 15
8002382 AGGGGTTAGG
8002392 GGGGTTTAAGGGTTA
1 GGGGTTTAAGGGTTA
8002407 GGGGTTTAA-GGTTA
1 GGGGTTTAAGGGTTA
* *
8002421 GGGGGATTCAGGGGTTA
1 -GGGG-TTTAAGGGTTA
*
8002438 TGGGTTT-AGGGTTA
1 GGGGTTTAAGGGTTA
8002452 GGGG
1 GGGG
8002456 GATTTATGGG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
14 14 0.35
15 15 0.38
16 6 0.15
17 5 0.12
ACGTcount: A:0.17, C:0.02, G:0.50, T:0.31
Consensus pattern (15 bp):
GGGGTTTAAGGGTTA
Found at i:8002421 original size:31 final size:31
Alignment explanation
Indices: 8002385--8002461 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
8002375 TTGTTTTAGG
*
8002385 GGTTAGGGGGGTTTAAGGGTTAGGGGTTTAA
1 GGTTAGGGGGATTTAAGGGTTAGGGGTTTAA
* * * *
8002416 GGTTAGGGGGATTCAGGGGTTATGGGTTTAG
1 GGTTAGGGGGATTTAAGGGTTAGGGGTTTAA
8002447 GGTTAGGGGGATTTA
1 GGTTAGGGGGATTTA
8002462 TGGGATATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.18, C:0.01, G:0.48, T:0.32
Consensus pattern (31 bp):
GGTTAGGGGGATTTAAGGGTTAGGGGTTTAA
Found at i:8003014 original size:149 final size:149
Alignment explanation
Indices: 8002841--8003148 Score: 526
Period size: 149 Copynumber: 2.1 Consensus size: 149
8002831 CATTTTTTTA
**
8002841 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTTGTAAAAACGCCACAAAAAATCATTTC
1 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTC
* * *
8002906 ATTTTGAACAAAACGATGTCGTTTTGTTATGTTAAAAATCCTTTATTTTATCTGCTAAAAATTAT
66 ATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
*
8002971 TAGTTTGTGGCGTTTTTCG
131 TAGTTTGCGGCGTTTTTCG
* * *
8002990 TAAAAACGCCGCTATTGCTTACCTTTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTC
1 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTC
*
8003055 ATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCTTTTATTTTATCTGCTAAAAATTAT
66 ATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
8003120 TAGTTTGCGGCGTTTTTCG
131 TAGTTTGCGGCGTTTTTCG
8003139 TAAAAACGCC
1 TAAAAACGCC
8003149 ACAAAAAATC
Statistics
Matches: 149, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (149 bp):
TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTC
ATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
TAGTTTGCGGCGTTTTTCG
Found at i:8003310 original size:108 final size:109
Alignment explanation
Indices: 8003014--8003474 Score: 807
Period size: 109 Copynumber: 4.2 Consensus size: 109
8003004 TTGCTTACCT
* *
8003014 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
8003079 TGTTATGCTAAAAAGCTTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
8003123 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
8003188 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
*
8003232 TTTGCGGCATTTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
8003296 TGTTATGCTAAAAATCCTTTATTTTATTTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
* * * *
8003340 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAATAAAACTACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
8003405 TGTTATACTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
*
8003449 TTTGTGGCGTTTTTCGTAAAAACGCC
1 TTTGCGGCGTTTTTCGTAAAAACGCC
8003475 GCTATTGCTT
Statistics
Matches: 338, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
108 107 0.32
109 231 0.68
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.39
Consensus pattern (109 bp):
TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
Found at i:8003407 original size:217 final size:218
Alignment explanation
Indices: 8003014--8003474 Score: 807
Period size: 217 Copynumber: 2.1 Consensus size: 218
8003004 TTGCTTACCT
* *
8003014 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
8003079 TGTTATGCTAAAAAGCTTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAA
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
*
8003144 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTA
131 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTTA
8003209 TTTTATCTGCTAAAAATTATTAG
196 TTTTATCTGCTAAAAATTATTAG
*
8003232 TTTGCGGCATTTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
8003296 TGTTATGCTAAAAATCCTTTATTTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
* * *
8003361 ACGCCACAAAAAATCATTTTATTTTGAATAAAACTACGTCGTTTTGTTATACTAAAAATCCTTTA
131 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTTA
8003426 TTTTATCTGCTAAAAATTATTAG
196 TTTTATCTGCTAAAAATTATTAG
*
8003449 TTTGTGGCGTTTTTCGTAAAAACGCC
1 TTTGCGGCGTTTTTCGTAAAAACGCC
8003475 GCTATTGCTT
Statistics
Matches: 229, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
217 207 0.90
218 22 0.10
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.39
Consensus pattern (218 bp):
TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTTA
TTTTATCTGCTAAAAATTATTAG
Found at i:8003535 original size:150 final size:149
Alignment explanation
Indices: 8003340--8003624 Score: 471
Period size: 150 Copynumber: 1.9 Consensus size: 149
8003330 AAATTATTAG
* * * * *
8003340 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAATAAAACTACGTCGTTT
1 TTTGCGGCATTTTTCATAAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
8003405 TGTTATACTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGTGGCGTTTTTCGTAAAA
66 TGTTATACTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAA
8003470 ACGCCGCTATTGCTTACCT
131 ACGCCGCTATTGCTTACCT
* *
8003489 TTTGCGGCGTTTTTCATAAAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGTT
1 TTTGCGGCATTTTTCAT-AAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTT
*
8003554 TTGTTATTCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAA
65 TTGTTATACTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAA
8003619 AACGCC
130 AACGCC
8003625 ACAAAAAATC
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
149 15 0.12
150 110 0.88
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (149 bp):
TTTGCGGCATTTTTCATAAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATACTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAA
ACGCCGCTATTGCTTACCT
Found at i:8003642 original size:109 final size:109
Alignment explanation
Indices: 8003489--8003733 Score: 427
Period size: 109 Copynumber: 2.2 Consensus size: 109
8003479 TTGCTTACCT
* * *
8003489 TTTGCGGCGTTTTTCATAAAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGTT
1 TTTGCGGCGTTTTTCGT-AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTT
*
8003554 TTGTTATTCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
65 TTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
*
8003599 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTTGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
8003664 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
8003708 TTTGCGGCGTTTTTCGTAAAAACGCC
1 TTTGCGGCGTTTTTCGTAAAAACGCC
8003734 GCTATTGCTT
Statistics
Matches: 129, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
109 113 0.88
110 16 0.12
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (109 bp):
TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
Found at i:8003719 original size:259 final size:258
Alignment explanation
Indices: 8003232--8003844 Score: 1057
Period size: 259 Copynumber: 2.4 Consensus size: 258
8003222 AAATTATTAG
* *
8003232 TTTGCGGCATTTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
8003296 TGTTATGCTAAAAATCCTTTATTTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
* * *
8003361 ACGCCACAAAAAATCATTTTATTTTGAATAAAACTACGTCGTTTTGTTATACTAAAAATCCTTTA
131 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTTA
*
8003426 TTTTATCTGCTAAAAATTATTAGTTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
196 TTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
* *
8003489 TTTGCGGCGTTTTTCATAAAAAAAGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGTT
1 TTTGCGGCGTTTTTCAT-AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTT
* * *
8003554 TTGTTATTCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAA
65 TTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAA
* *
8003619 AACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTTGTTTTGTTATGCTAAAAATCCTTT
130 AACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTT
8003684 ATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
195 ATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
* *
8003748 TTTGCAGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGGCGTCGTTT
1 TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
8003813 TGTTATGCTAAAAATCTTTTATTTTATCTGCT
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCT
8003845 TAAATGAAAT
Statistics
Matches: 333, Mismatches: 21, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
257 15 0.05
258 74 0.22
259 244 0.73
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (258 bp):
TTTGCGGCGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATACTAAAAATCCTTTA
TTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
Found at i:8004297 original size:26 final size:27
Alignment explanation
Indices: 8004261--8004311 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
8004251 CTTATATTTT
8004261 AGCTAGAAATCGACGATG-CCAGAAGA
1 AGCTAGAAATCGACGATGACCAGAAGA
8004287 AGCTAGAAATCGACGATGACCAGAA
1 AGCTAGAAATCGACGATGACCAGAA
8004312 ACTGTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (27 bp):
AGCTAGAAATCGACGATGACCAGAAGA
Found at i:8006864 original size:43 final size:43
Alignment explanation
Indices: 8006817--8007014 Score: 254
Period size: 43 Copynumber: 4.6 Consensus size: 43
8006807 TCTCTAAACA
* * * *
8006817 CGCCGCTAAAGGTCTTGCTCTTTAGCAGTGTTTTCGGGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAG
*
8006860 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGGAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAG
* **
8006903 CGCCGCTAAAGGTCTTGTTCTTTAACGGCGTTTTTATGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAG
* * *
8006946 CGCCGTTAAAGTTTTTGTTCTTTAGCGGCGTTTTT-GGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAG
* * * *
8006988 TGCCGCTAAAAGTCATGATCTTTAGCG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCG
8007015 ACGCTTATTT
Statistics
Matches: 134, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 26 0.19
43 108 0.81
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.34
Consensus pattern (43 bp):
CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAG
Found at i:8007036 original size:86 final size:86
Alignment explanation
Indices: 8006860--8007037 Score: 207
Period size: 86 Copynumber: 2.1 Consensus size: 86
8006850 TCGGGGAAAG
* * * *
8006860 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGGAAGCGCCGCTAAAGGTCTTGTTCTT
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAAGTCATGATCTT
* * *
8006925 TAACGGCGTTTTTATGGAAAG
66 TAACGACGTTTTTATGAAAAA
* * * *
8006946 CGCCGTTAAAGTTTTTGTTCTTTAGCGGCGTTTTT-GGGAAAGTGCCGCTAAAAGTCATGATCTT
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAAGTCATGATCTT
* *
8007010 TAGCGACGCTTATTTCT-AAAAA
66 TAACGACG-TT-TTTATGAAAAA
8007032 CGCCGC
1 CGCCGC
8007038 AAATGTTAGC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
85 30 0.39
86 42 0.55
87 4 0.05
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (86 bp):
CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAAGTCATGATCTT
TAACGACGTTTTTATGAAAAA
Found at i:8038088 original size:27 final size:26
Alignment explanation
Indices: 8038030--8038082 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8038020 AAATTGCAAC
*
8038030 ATATTTTTATTAAAATATAAACATAA
1 ATATTTTTATTAAAATATAAAAATAA
*
8038056 ATATTTTTCATTAATATATTAAAAATA
1 ATATTTTT-ATTAAAATA-TAAAAATA
8038083 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 8 0.35
27 8 0.35
28 7 0.30
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATTTTTATTAAAATATAAAAATAA
Found at i:8038099 original size:20 final size:21
Alignment explanation
Indices: 8038074--8038118 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
8038064 CATTAATATA
8038074 TTAAAAATATTA-TTTAAAAT
1 TTAAAAATATTATTTTAAAAT
*
8038094 TTAAAATTATTATTTTTAAAAT
1 TTAAAAATATTA-TTTTAAAAT
8038116 TTA
1 TTA
8038119 TTATTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
22 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAAAAATATTATTTTAAAAT
Done.