Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 29 of 185
Found at i:8038113 original size:15 final size:16
Alignment explanation
Indices: 8038093--8038123 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8038083 TTATTTAAAA
8038093 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
8038108 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
8038124 AAAATAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:8038150 original size:17 final size:19
Alignment explanation
Indices: 8038112--8038157 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
8038102 ATTATTTTTA
8038112 AAATTTAT--TATTAAAAT
1 AAATTTATAATATTAAAAT
*
8038129 AAATTTGTAATATT-AAAT
1 AAATTTATAATATTAAAAT
8038147 -AATTTATAATA
1 AAATTTATAATA
8038158 ATTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 17 0.68
18 4 0.16
19 4 0.16
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
AAATTTATAATATTAAAAT
Found at i:8041198 original size:36 final size:36
Alignment explanation
Indices: 8041158--8041229 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
8041148 TGGTTGGGTG
*
8041158 TAATGGATTAGCCATTACACCTTTATTCTGTGGCCC
1 TAATGGATTAGCCATTACACCTTTATTATGTGGCCC
*
8041194 TAATGGATTAGCCATTATACCTTTATTATGTGGCCC
1 TAATGGATTAGCCATTACACCTTTATTATGTGGCCC
8041230 CACTCAATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (36 bp):
TAATGGATTAGCCATTACACCTTTATTATGTGGCCC
Found at i:8047035 original size:15 final size:15
Alignment explanation
Indices: 8047017--8047045 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8047007 ATCAAGAATT
8047017 TTATGAAATTATATA
1 TTATGAAATTATATA
8047032 TTATGAAATTATAT
1 TTATGAAATTATAT
8047046 TTAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
TTATGAAATTATATA
Found at i:8047057 original size:88 final size:91
Alignment explanation
Indices: 8046892--8047095 Score: 342
Period size: 88 Copynumber: 2.3 Consensus size: 91
8046882 ATGATTTTAG
* * *
8046892 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATGAAATTATA
*
8046957 TTTAATATTAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
8046983 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAA-T-TATAT-ATTATGAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATGAAATTATA
8047045 TTTAATAATAATTATTTTAAATTATA
66 TTTAATAATAATTATTTTAAATTATA
*
8047071 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
8047096 GTAATAATTA
Statistics
Matches: 108, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
88 62 0.57
89 5 0.05
90 1 0.01
91 40 0.37
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATGAAATTATA
TTTAATAATAATTATTTTAAATTATA
Found at i:8047176 original size:59 final size:62
Alignment explanation
Indices: 8047105--8047280 Score: 168
Period size: 59 Copynumber: 2.9 Consensus size: 62
8047095 AGTAATAATT
*
8047105 ATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCA-A
1 ATTAAGAATTTTATTAAATCATATATTTTAATTATAATATATTTAATAATAATTATTTCATA
* * * * * * * * * * *
8047166 ATT-A-TATTTTA-TAGTATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATT
1 ATTAAGAATTTTATTA-AATCATATATTTTAATTATAATATATTTA-ATAATAATTATTTCATA
8047225 ATTAAGAATTTTATTAAATTC-TATATTTTAATTATAATATATTTAATAATAATTAT
1 ATTAAGAATTTTATTAAA-TCATATATTTTAATTATAATATATTTAATAATAATTAT
8047281 GTTAAAATAT
Statistics
Matches: 85, Mismatches: 21, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
58 5 0.06
59 32 0.38
60 14 0.16
61 30 0.35
62 4 0.05
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (62 bp):
ATTAAGAATTTTATTAAATCATATATTTTAATTATAATATATTTAATAATAATTATTTCATA
Found at i:8051578 original size:22 final size:23
Alignment explanation
Indices: 8051550--8051594 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8051540 ATGCAATCTT
8051550 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
8051572 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
8051595 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:8051604 original size:22 final size:23
Alignment explanation
Indices: 8051560--8051604 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8051550 AGATATGATA
*
8051560 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
8051583 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
8051605 ATAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:8055257 original size:31 final size:32
Alignment explanation
Indices: 8055206--8055270 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 32
8055196 TTTTGTACTC
* * *
8055206 TTTATAAATTTAGAATTTAATTATTGTATTTT
1 TTTAAAAATTTAGAAATTAATTATTCTATTTT
*
8055238 TTTAAAAATTTA-AAATTAATTCTTCTATTTT
1 TTTAAAAATTTAGAAATTAATTATTCTATTTT
8055269 TT
1 TT
8055271 AGATTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 18 0.62
32 11 0.38
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (32 bp):
TTTAAAAATTTAGAAATTAATTATTCTATTTT
Found at i:8064256 original size:46 final size:46
Alignment explanation
Indices: 8064186--8064325 Score: 208
Period size: 46 Copynumber: 3.0 Consensus size: 46
8064176 ACAATGCTAT
* * * * *
8064186 AACTTAGTATAGTTTCCTTTACTGAAATACCATACCCACTTTTCAC
1 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
8064232 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * *
8064278 AACTCAGTATGGCTTTATTCACTGAAACACCATACCTACTTTTCAC
1 AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
8064324 AA
1 AA
8064326 TTTTCCATGG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.35
Consensus pattern (46 bp):
AACTTAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:8073790 original size:3 final size:3
Alignment explanation
Indices: 8073782--8073811 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8073772 GTTTTTACAA
8073782 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8073812 CATCATCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8073850 original size:12 final size:12
Alignment explanation
Indices: 8073842--8073874 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8073832 TTTTTTACTG
8073842 TTTTATTTAATA
1 TTTTATTTAATA
*
8073854 TTTCATTTAATA
1 TTTTATTTAATA
8073866 TTTTATTTA
1 TTTTATTTA
8073875 TTTATTTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTATTTAATA
Found at i:8075379 original size:16 final size:16
Alignment explanation
Indices: 8075354--8075387 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8075344 TGTGTTTTGC
*
8075354 TTTGATTGCATGACAT
1 TTTGACTGCATGACAT
*
8075370 TTTGACTGCATGGCAT
1 TTTGACTGCATGACAT
8075386 TT
1 TT
8075388 CATCATAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATGACAT
Found at i:8078678 original size:41 final size:41
Alignment explanation
Indices: 8078612--8078778 Score: 253
Period size: 41 Copynumber: 4.0 Consensus size: 41
8078602 TTATGCAATT
* * *
8078612 TGAATCAGGCTATAAGCCTAACAGGCTAAGTGCCGGTGATC
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* * *
8078653 GGAATCAAGTTATAAAACTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
8078694 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* *
8078735 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAATC
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTG-ATC
8078777 TG
1 TG
8078779 TTAAATTAAG
Statistics
Matches: 114, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 109 0.96
42 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
Found at i:8082167 original size:21 final size:22
Alignment explanation
Indices: 8082143--8082188 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
8082133 GTTCAGATCC
8082143 AATCAAAAAATA-TTTCAAAAA
1 AATCAAAAAATATTTTCAAAAA
8082164 AATCAAAAAATATTTTTCAAAAA
1 AATCAAAAAATA-TTTTCAAAAA
8082187 AA
1 AA
8082189 AGAAAGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 12 0.52
23 11 0.48
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (22 bp):
AATCAAAAAATATTTTCAAAAA
Found at i:8082253 original size:15 final size:16
Alignment explanation
Indices: 8082225--8082266 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8082215 AAATGATGAA
*
8082225 AAAAGGAAAGAAAAA-G
1 AAAA-GAAAAAAAAAGG
*
8082241 AGAAGAAAAAAAAAGG
1 AAAAGAAAAAAAAAGG
8082257 AAAAGAAAAA
1 AAAAGAAAAA
8082267 GGAGAGGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAAAGG
Found at i:8083582 original size:51 final size:49
Alignment explanation
Indices: 8083520--8083801 Score: 266
Period size: 46 Copynumber: 5.9 Consensus size: 49
8083510 AGTCATTATG
8083520 GCGAAT-TTATTT-CCTCGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCA
1 GCGAATCTTATTTCCCT-GGCGTTGCAGT--AACAGATTAAAGCTGAAGGCA
* * * *
8083570 ACGAATCTTATTTCCCTAGCGTTGCATTAGAACAGATTAAAGCTCAAGGCA
1 GCGAATCTTATTTCCCTGGCGTTGCAGT--AACAGATTAAAGCTGAAGGCA
* * ** *
8083621 GCAAATCTTATTTCCCTAGCGTTGC----ACAGGCTAAAGCTAAAGGCA
1 GCGAATCTTATTTCCCTGGCGTTGCAGTAACAGATTAAAGCTGAAGGCA
*
8083666 GC-AAGTCTTATTTCTCTGGCGTTGC---AACAGATTAAAGCTGAAGGCA
1 GCGAA-TCTTATTTCCCTGGCGTTGCAGTAACAGATTAAAGCTGAAGGCA
*
8083712 GCGAGTCTTATTTCCCTGGCGTTGCAGT---AGATTAAAGCTGAAGGCA
1 GCGAATCTTATTTCCCTGGCGTTGCAGTAACAGATTAAAGCTGAAGGCA
* * **
8083758 ACGAATCTTATTTCTCTGGCGTTATAGTGGAACAGATTAAAGCT
1 GCGAATCTTATTTCCCTGGCGTTGCAGT--AACAGATTAAAGCT
8083802 ACAAATCATG
Statistics
Matches: 197, Mismatches: 22, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.01
45 37 0.19
46 79 0.40
47 1 0.01
50 5 0.03
51 70 0.36
52 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (49 bp):
GCGAATCTTATTTCCCTGGCGTTGCAGTAACAGATTAAAGCTGAAGGCA
Found at i:8083719 original size:46 final size:46
Alignment explanation
Indices: 8083549--8083780 Score: 270
Period size: 46 Copynumber: 5.0 Consensus size: 46
8083539 GTTGCAGTGG
* *
8083549 AACAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTAGCGTTGC
1 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGC
* * *
8083595 ATTAGAACAGATTAAAGCTCAAGGCAGCAAATCTTATTTCCCTAGCGTTGC
1 -----AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGC
** * *
8083646 -ACAGGCTAAAGCTAAAGGCAGC-AAGTCTTATTTCTCTGGCGTTGC
1 AACAGATTAAAGCTGAAGGCAGCGAA-TCTTATTTCCCTGGCGTTGC
*
8083691 AACAGATTAAAGCTGAAGGCAGCGAGTCTTATTTCCCTGGCGTTGC
1 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGC
** * *
8083737 AGTAGATTAAAGCTGAAGGCAACGAATCTTATTTCTCTGGCGTT
1 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTT
8083781 ATAGTGGAAC
Statistics
Matches: 160, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
44 2 0.01
45 37 0.23
46 77 0.48
47 1 0.01
51 43 0.27
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (46 bp):
AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGC
Found at i:8083724 original size:91 final size:92
Alignment explanation
Indices: 8083551--8083780 Score: 275
Period size: 91 Copynumber: 2.5 Consensus size: 92
8083541 TGCAGTGGAA
* * * *
8083551 CAGATTAAAGCTGAAGGCAACGAATCTTATTTCCCTAGCGTTGCATTAGAACAGATTAAAGCTCA
1 CAGACTAAAGCTAAAGGCAACGAATCTTATTTCTCTGGCGTTGC-----AACAGATTAAAGCTCA
8083616 AGGCAGCAAATCTTATTTCCCTAGCGTTGCA-
61 AGGCAGCAAATCTTATTTCCCTAGCGTTGCAG
* * *
8083647 CAGGCTAAAGCTAAAGGCAGC-AAGTCTTATTTCTCTGGCGTTGCAACAGATTAAAGCTGAAGGC
1 CAGACTAAAGCTAAAGGCAACGAA-TCTTATTTCTCTGGCGTTGCAACAGATTAAAGCTCAAGGC
* * *
8083711 AGCGAGTCTTATTTCCCTGGCGTTGCAG
65 AGCAAATCTTATTTCCCTAGCGTTGCAG
* * *
8083739 TAGATTAAAGCTGAAGGCAACGAATCTTATTTCTCTGGCGTT
1 CAGACTAAAGCTAAAGGCAACGAATCTTATTTCTCTGGCGTT
8083781 ATAGTGGAAC
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
91 43 0.37
92 34 0.29
93 2 0.02
95 2 0.02
96 35 0.30
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (92 bp):
CAGACTAAAGCTAAAGGCAACGAATCTTATTTCTCTGGCGTTGCAACAGATTAAAGCTCAAGGCA
GCAAATCTTATTTCCCTAGCGTTGCAG
Found at i:8085486 original size:12 final size:12
Alignment explanation
Indices: 8085471--8085499 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8085461 TTACTGTTTT
8085471 ATTTAATATTTC
1 ATTTAATATTTC
8085483 ATTTAATATTTC
1 ATTTAATATTTC
8085495 ATTTA
1 ATTTA
8085500 TTTATTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTAATATTTC
Found at i:8086907 original size:19 final size:19
Alignment explanation
Indices: 8086886--8086923 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8086876 AAAATTTAAA
8086886 ATAAT-TTT-TAAAAT-TC
1 ATAATATTTATAAAATCTC
8086902 ATAATATTTATAAAATCTC
1 ATAATATTTATAAAATCTC
8086921 ATA
1 ATA
8086924 TTCAAGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 3 0.16
18 6 0.32
19 5 0.26
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATATTTATAAAATCTC
Found at i:8090869 original size:9 final size:9
Alignment explanation
Indices: 8090855--8090880 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8090845 CATCATCTTC
8090855 TTCTTGTTG
1 TTCTTGTTG
8090864 TTCTTGTTG
1 TTCTTGTTG
8090873 TTCTTGTT
1 TTCTTGTT
8090881 CTTCCCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.19, T:0.69
Consensus pattern (9 bp):
TTCTTGTTG
Found at i:8093659 original size:17 final size:17
Alignment explanation
Indices: 8093635--8093677 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
8093625 CTTGTTTAGT
* *
8093635 AATATTTTTATTTCGAA
1 AATATTTTTATTCCAAA
*
8093652 AGTATTTTTATTCCAAA
1 AATATTTTTATTCCAAA
8093669 AATATTTTT
1 AATATTTTT
8093678 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (17 bp):
AATATTTTTATTCCAAA
Found at i:8097241 original size:14 final size:15
Alignment explanation
Indices: 8097222--8097260 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
8097212 GAAGTAGAGG
*
8097222 AATTAAATTTA-TAA
1 AATTAAATTTAGAAA
*
8097236 AATTAAAATTAGAAA
1 AATTAAATTTAGAAA
8097251 AATTAAATTT
1 AATTAAATTT
8097261 CAAATTACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AATTAAATTTAGAAA
Found at i:8098233 original size:185 final size:185
Alignment explanation
Indices: 8097894--8098245 Score: 460
Period size: 185 Copynumber: 1.9 Consensus size: 185
8097884 GCCTCAAAAG
8097894 ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
1 ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
* * * * *
8097959 GCCAATTATCAATCTTTAGCGGCGTTTCTCGGTAAGCGCCACAAAAAGACTTCCGCCCCACGACG
66 GCCAATGATCAATCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAGACTTCAGCCCAACGACA
8098024 CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGATGCGCCGCAAACGT
131 CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGATGCGCCGCAAACGT
* * ** ** * *
8098079 ACTTCAGCCTAACGATGCCGTTTT-TGAGCTTTCGGGGGATTTAGTGGCG-TTTTCATGCAATCG
1 ACTTCAGCCCAACGACGCCGTTTTCTGAGC-TGAGAAGGATTTAGTGGCGATTTT-ATGAAAGCG
* * * * * * *
8098142 CCGCGAATGCTCAAGTCTTTAGCGGCGTTTTTGGGAAAGCGCCGC-AAACGTACTTCAGCCGAAC
64 CCGCCAATGATCAA-TCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAG-ACTTCAGCCCAAC
8098206 GACACCGTTTTCTGAGCTTTC-GGGATTTAGTGGCGTTTTT
127 GACACCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTT
8098246 ATTAAAGCGT
Statistics
Matches: 143, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
184 9 0.06
185 78 0.55
186 56 0.39
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.29
Consensus pattern (185 bp):
ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
GCCAATGATCAATCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAGACTTCAGCCCAACGACA
CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGATGCGCCGCAAACGT
Found at i:8098244 original size:113 final size:113
Alignment explanation
Indices: 8098043--8098613 Score: 584
Period size: 113 Copynumber: 5.1 Consensus size: 113
8098033 GAGCTTTCGG
* * * * *
8098043 GGATTTAGTGGCGTTTTTGGG-ATGCGCCGCAAACGTACTTCAGCCTAACGATGCCGTTTT-TGA
1 GGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGA
* * * * *
8098106 GCTTTCGGGGGATTTAGTGGCGTTTTCATGCAATCGCCGCGAATGCTCAA
66 GCTTTC--GGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
** * * *
8098156 GTCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACGTACTTCAGCCGAACGACACCGTTTTCTGA
1 GGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGA
* * *
8098221 GCTTTCGGGATTTAGTGGCGTTTTTATTAAAGCGTCGCTAATACT-TA
66 GCTTTCGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
* * *
8098268 GGATTTAGCGGCGTTTTTGTGAAAGCGCCAC-AACAATACTTCAGCCCAACAACGCCGTTTTCTG
1 GGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAC-ATACTTCAGCCCAACGACGCCGTTTTCTG
* * * * *
8098332 AGCTTTCGAGATTTAGTAGCGTTTTTATTAAAGCGCCGTTAATACTCAG
65 AGCTTTCGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
* * * * *
8098381 GGATTTAACGGCATTTTTGTGAAAGCGCCACAATA-ATACTTCAGCCCAACGACGTCGTTTTCTG
1 GGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAA-ACATACTTCAGCCCAACGACGCCGTTTTCTG
** * * * *
8098445 AGC-TGAGAAGGATTTAGTGGCGTTTTT-TGTATGCGCCACTAATGCTC-A
65 AGCTTTCG--GGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
* * * * *
8098493 GGTCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGTCGTTTTTTT
1 GG-ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTG
* * * * *
8098558 AGCTTTCGGGGATTTGGTGGTGTTTTTATG-AAGCGCCACTAATACTGAG
65 AGCTTTC-GGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
8098607 GGATTTA
1 GGATTTA
8098614 AAATAATTTA
Statistics
Matches: 384, Mismatches: 60, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
111 3 0.01
112 100 0.26
113 213 0.55
114 57 0.15
115 11 0.03
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (113 bp):
GGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGA
GCTTTCGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAA
Found at i:8098858 original size:15 final size:14
Alignment explanation
Indices: 8098838--8098870 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
8098828 TAAGTTTTAT
8098838 AGATTATGGAATTAG
1 AGATTATGG-ATTAG
8098853 AGATTATGGATTAG
1 AGATTATGGATTAG
8098867 -GATT
1 AGATT
8098871 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 5 0.28
15 9 0.50
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (14 bp):
AGATTATGGATTAG
Found at i:8098917 original size:20 final size:20
Alignment explanation
Indices: 8098892--8098952 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
8098882 TTAATGTGAT
*
8098892 TTAAGGTTTATGGGTTAGGG
1 TTAAGGATTATGGGTTAGGG
*
8098912 TTAAGGGTTATGGGTTAGGG
1 TTAAGGATTATGGGTTAGGG
*
8098932 TTAGGGATTA--GGTTAGGG
1 TTAAGGATTATGGGTTAGGG
8098950 TTA
1 TTA
8098953 GATGTTAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
18 11 0.29
20 27 0.71
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (20 bp):
TTAAGGATTATGGGTTAGGG
Found at i:8098921 original size:13 final size:12
Alignment explanation
Indices: 8098903--8098953 Score: 68
Period size: 13 Copynumber: 4.1 Consensus size: 12
8098893 TAAGGTTTAT
8098903 GGGTTAGGGTTAA
1 GGGTTAGGGTT-A
8098916 GGGTTATGGGTTA
1 GGGTTA-GGGTTA
8098929 GGGTTAGGGATTA
1 GGGTTAGGG-TTA
8098942 -GGTTAGGGTTA
1 GGGTTAGGGTTA
8098953 G
1 G
8098954 ATGTTAAGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.09
12 11 0.31
13 16 0.46
14 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (12 bp):
GGGTTAGGGTTA
Found at i:8098942 original size:7 final size:6
Alignment explanation
Indices: 8098903--8098953 Score: 68
Period size: 6 Copynumber: 8.2 Consensus size: 6
8098893 TAAGGTTTAT
8098903 GGGTTA GGGTTAA GGGTTA TGGGTTA GGGTTA GGGATTA -GGTTA GGGTTA
1 GGGTTA GGGTT-A GGGTTA -GGGTTA GGGTTA GGG-TTA GGGTTA GGGTTA
8098953 G
1 G
8098954 ATGTTAAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 3 0.07
6 23 0.56
7 15 0.37
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (6 bp):
GGGTTA
Found at i:8099065 original size:7 final size:6
Alignment explanation
Indices: 8099052--8099109 Score: 53
Period size: 6 Copynumber: 9.0 Consensus size: 6
8099042 TAAATAAGGT
* * *
8099052 TTAGGG TTAGGGG TTAGAGG TCATGGG TTAAGGG TTAAGG TTAAGG TTAGGG
1 TTAGGG TTA-GGG TTAG-GG TTA-GGG TT-AGGG TTAGGG TTAGGG TTAGGG
8099104 TTAGGG
1 TTAGGG
8099110 ATTGGTTATG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 24 0.55
7 18 0.41
8 2 0.05
ACGTcount: A:0.22, C:0.02, G:0.45, T:0.31
Consensus pattern (6 bp):
TTAGGG
Found at i:8099392 original size:20 final size:20
Alignment explanation
Indices: 8099352--8099394 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8099342 ATAATAATTT
**
8099352 AAAATTGTAAAAATTGTAAA
1 AAAATTGTAAAAATTACAAA
*
8099372 AAAATTGTCAAAATTACAAA
1 AAAATTGTAAAAATTACAAA
8099392 AAA
1 AAA
8099395 TAAAATGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAATTGTAAAAATTACAAA
Found at i:8099410 original size:11 final size:10
Alignment explanation
Indices: 8099390--8099429 Score: 53
Period size: 11 Copynumber: 3.7 Consensus size: 10
8099380 CAAAATTACA
8099390 AAAAATAAAAT
1 AAAAA-AAAAT
8099401 GAAAAAAAAAT
1 -AAAAAAAAAT
8099412 AAAAAAGAAAT
1 AAAAAA-AAAT
8099423 AAAAAAA
1 AAAAAAA
8099430 CTAAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.26
11 15 0.56
12 5 0.19
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:8100165 original size:198 final size:197
Alignment explanation
Indices: 8099908--8100310 Score: 691
Period size: 198 Copynumber: 2.0 Consensus size: 197
8099898 TGTATAAACG
* *
8099908 CCGCAATTTACAGAATTGTTTAGGAAAATGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
1 CCGCAAATTACAGAATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
* *
8099973 AGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAAAATGCCATGA
66 AGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCATGA
* *
8100038 GTTTGAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATATAAA
131 GTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACAAA
8100103 AA
196 AA
*
8100105 CCGCAAATTACAGAAATTGTTTAGGAAAACGGCTTCGTTTTCTTATTT-ACTTTTAGTGGCGCTT
1 CCGCAAATTACAG-AATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAAC-TTTAGTGGCGCTT
8100169 TTAGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCAT
64 TTAGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCAT
*
8100234 GAGTTTCAGTTAACTGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACA
129 GAGTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACA
**
8100299 AACG
194 AAAA
8100303 CCGCAAAT
1 CCGCAAAT
8100311 GGGTTAATTA
Statistics
Matches: 194, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
197 14 0.07
198 180 0.93
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (197 bp):
CCGCAAATTACAGAATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
AGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCATGA
GTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACAAA
AA
Found at i:8101566 original size:18 final size:19
Alignment explanation
Indices: 8101543--8101586 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
8101533 ACAGAATTTC
*
8101543 TGTTTCTCTAGCA-TGTTA
1 TGTTTCTCTACCATTGTTA
* *
8101561 TGTTTCTGTACCATTTTTA
1 TGTTTCTCTACCATTGTTA
8101580 TGTTTCT
1 TGTTTCT
8101587 TTATTTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (19 bp):
TGTTTCTCTACCATTGTTA
Found at i:8102234 original size:24 final size:25
Alignment explanation
Indices: 8102207--8102264 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
8102197 TAAATTTACT
* * *
8102207 CTTAATATATTACTTGAAT-TATTA
1 CTTAATAAATTACTTAAATACATTA
8102231 CTTAATAAATTACTTAAATACATTA
1 CTTAATAAATTACTTAAATACATTA
*
8102256 CTTACTAAA
1 CTTAATAAA
8102265 ATTTCGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (25 bp):
CTTAATAAATTACTTAAATACATTA
Found at i:8102242 original size:12 final size:12
Alignment explanation
Indices: 8102207--8102264 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
8102197 TAAATTTACT
*
8102207 CTTAATATATTA
1 CTTAATAAATTA
*
8102219 CTTGAAT-TATTA
1 CTT-AATAAATTA
8102231 CTTAATAAATTA
1 CTTAATAAATTA
*
8102243 CTTAAATACATTA
1 CTT-AATAAATTA
*
8102256 CTTACTAAA
1 CTTAATAAA
8102265 ATTTCGTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
11 3 0.08
12 22 0.56
13 14 0.36
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (12 bp):
CTTAATAAATTA
Found at i:8102255 original size:13 final size:13
Alignment explanation
Indices: 8102227--8102259 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8102217 TACTTGAATT
8102227 ATTACTT-AATAA
1 ATTACTTAAATAA
*
8102239 ATTACTTAAATAC
1 ATTACTTAAATAA
8102252 ATTACTTA
1 ATTACTTA
8102260 CTAAAATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTACTTAAATAA
Found at i:8102307 original size:52 final size:53
Alignment explanation
Indices: 8102240--8102361 Score: 192
Period size: 52 Copynumber: 2.3 Consensus size: 53
8102230 ACTTAATAAA
*
8102240 TTACTTAAATACATTACTTACTAAAATTTCGTTAAA-TTTTTACTTAAATATG
1 TTACTCAAATACATTACTTACTAAAATTTCGTTAAATTTTTTACTTAAATATG
* *
8102292 TTACTCAGATACATTACTTACTAAAATTTGGTTAAATTTTTTACTTAAATATG
1 TTACTCAAATACATTACTTACTAAAATTTCGTTAAATTTTTTACTTAAATATG
* *
8102345 TTATTTAAATACATTAC
1 TTACTCAAATACATTAC
8102362 CCGCTATAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
52 33 0.52
53 30 0.48
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (53 bp):
TTACTCAAATACATTACTTACTAAAATTTCGTTAAATTTTTTACTTAAATATG
Found at i:8102527 original size:9 final size:9
Alignment explanation
Indices: 8102503--8102751 Score: 173
Period size: 9 Copynumber: 28.8 Consensus size: 9
8102493 TATGTACAAG
8102503 AACTTACAT
1 AACTTACAT
* *
8102512 AATTTACAC
1 AACTTACAT
8102521 AACTTACAT
1 AACTTACAT
*
8102530 AACCTACAT
1 AACTTACAT
8102539 AACTTACAT
1 AACTTACAT
8102548 AA--TACA-
1 AACTTACAT
*
8102554 AAGTTACAT
1 AACTTACAT
* *
8102563 AACTGAAAT
1 AACTTACAT
* *
8102572 AGCTTACAC
1 AACTTACAT
8102581 AACTTACAT
1 AACTTACAT
8102590 AACTTACAT
1 AACTTACAT
*
8102599 AACTTACAG
1 AACTTACAT
* *
8102608 AAGTTATAT
1 AACTTACAT
*
8102617 AATACATA-AT
1 -A-ACTTACAT
8102627 AACTTAC--
1 AACTTACAT
8102634 AACTTACAT
1 AACTTACAT
*
8102643 AACATACAT
1 AACTTACAT
* **
8102652 TACTTTGAT
1 AACTTACAT
8102661 AACTTACAT
1 AACTTACAT
*
8102670 AAGTTACAT
1 AACTTACAT
*
8102679 AA--TACAC
1 AACTTACAT
8102686 AACTTACAT
1 AACTTACAT
** *
8102695 AGTTTACTT
1 AACTTACAT
8102704 AA--TACA-
1 AACTTACAT
8102710 AACTTACAT
1 AACTTACAT
8102719 AACTT--AT
1 AACTTACAT
*
8102726 ACACGTACAT
1 A-ACTTACAT
8102736 AACTTACAT
1 AACTTACAT
*
8102745 AATTTAC
1 AACTTAC
8102752 TTAATACATA
Statistics
Matches: 183, Mismatches: 41, Indels: 32
0.71 0.16 0.12
Matches are distributed among these distances:
6 4 0.02
7 23 0.13
8 15 0.08
9 132 0.72
10 6 0.03
11 3 0.02
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:8107984 original size:23 final size:23
Alignment explanation
Indices: 8107940--8107984 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8107930 GAACTCCATT
* *
8107940 TTCTGTCATATCAATTATTCAAG
1 TTCTGTCATATCAAATAATCAAG
8107963 TTCTGTTCATA-CAAATAATCAA
1 TTCTG-TCATATCAAATAATCAA
8107985 TAAGGAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.40
Consensus pattern (23 bp):
TTCTGTCATATCAAATAATCAAG
Found at i:8117415 original size:23 final size:23
Alignment explanation
Indices: 8117372--8117415 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8117362 ATTATTGACC
* *
8117372 AAATAAAAATAGTTGAGTAATCA
1 AAATAAAAATACTTCAGTAATCA
8117395 AAATAAAAATACTCTCA-TAAT
1 AAATAAAAATACT-TCAGTAAT
8117416 TGAATAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (23 bp):
AAATAAAAATACTTCAGTAATCA
Found at i:8118017 original size:5 final size:5
Alignment explanation
Indices: 8118004--8118054 Score: 75
Period size: 5 Copynumber: 10.2 Consensus size: 5
8117994 TTAATATAAA
* * *
8118004 TTTAT TTCAT TTCAT TTCAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
8118054 T
1 T
8118055 ACTATTTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:8118062 original size:15 final size:15
Alignment explanation
Indices: 8118012--8118061 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8118002 AATTTATTTC
* * *
8118012 ATTTCATTTCATTTT
1 ATTTTATTTTATTCT
*
8118027 ATTTTATTTTATTTT
1 ATTTTATTTTATTCT
8118042 ATTTTATTTTATTACT
1 ATTTTATTTTATT-CT
8118058 ATTT
1 ATTT
8118062 AGGAATTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 26 0.84
16 5 0.16
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTATTTTATTCT
Found at i:8133419 original size:12 final size:12
Alignment explanation
Indices: 8133404--8133432 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
8133394 TTACTGTTTT
8133404 ATTTAATATTTC
1 ATTTAATATTTC
8133416 ATTTAATATTTC
1 ATTTAATATTTC
8133428 ATTTA
1 ATTTA
8133433 TTTTATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTAATATTTC
Found at i:8141325 original size:17 final size:17
Alignment explanation
Indices: 8141301--8141343 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
8141291 CTTGTTTAGT
* *
8141301 AATATTTTTATTTCGAA
1 AATATTTTTATTCCAAA
*
8141318 AGTATTTTTATTCCAAA
1 AATATTTTTATTCCAAA
8141335 AATATTTTT
1 AATATTTTT
8141344 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (17 bp):
AATATTTTTATTCCAAA
Found at i:8144920 original size:14 final size:15
Alignment explanation
Indices: 8144901--8144939 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
8144891 GAAGTAGAGG
*
8144901 AATTAAATTTA-TAA
1 AATTAAATTTAGAAA
*
8144915 AATTAAAATTAGAAA
1 AATTAAATTTAGAAA
8144930 AATTAAATTT
1 AATTAAATTT
8144940 CAAAATTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AATTAAATTTAGAAA
Found at i:8145899 original size:187 final size:186
Alignment explanation
Indices: 8145575--8145928 Score: 471
Period size: 187 Copynumber: 1.9 Consensus size: 186
8145565 GCCTCAAAAG
8145575 ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
1 ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
* * * * *
8145640 GCCAATTATCAATCTTTAGCGGCGTTTCTCGGTAAGCGCCACAAAAAGACTTCCGCCCCACGACG
66 GCCAATGATCAATCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAGACTTCAGCCCAACGACA
8145705 CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGGATGCGCCGCAAACGT
131 CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGGATGCGCCGCAAACGT
* * ** ** * *
8145761 ACTTCAGCCTAACGATGCCGTTTT-TGAGCTTTCGGGGGATTTAGTGGCG-TTTTCATGCAATCG
1 ACTTCAGCCCAACGACGCCGTTTTCTGAGC-TGAGAAGGATTTAGTGGCGATTTT-ATGAAAGCG
* * * * * * *
8145824 CCGCGAATGCTCAAGTCTTTAGCGGCGTTTTTGGGAAAGCGCCGC-AAACGTACTTCAGCCGAAC
64 CCGCCAATGATCAA-TCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAG-ACTTCAGCCCAAC
8145888 GACACCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTT
127 GACACCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTT
8145929 ATTAAAGCGT
Statistics
Matches: 144, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
185 9 0.06
186 59 0.41
187 76 0.53
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (186 bp):
ACTTCAGCCCAACGACGCCGTTTTCTGAGCTGAGAAGGATTTAGTGGCGATTTTATGAAAGCGCC
GCCAATGATCAATCTTTAGCGGCGTTTCTCGGAAAGCGCCACAAAAAGACTTCAGCCCAACGACA
CCGTTTTCTGAGCTTTCGGGGATTTAGTGGCGTTTTTGGGGATGCGCCGCAAACGT
Found at i:8145927 original size:114 final size:114
Alignment explanation
Indices: 8145723--8146299 Score: 633
Period size: 114 Copynumber: 5.1 Consensus size: 114
8145713 TGAGCTTTCG
* * * * * *
8145723 GGGATTTAGTGGCGTTTTTGGGGATGCGCCGCAAACGTACTTCAGCCTAACGATGCCGTTTT-TG
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTG
* * * * *
8145787 AGCTTTCGGGGGATTTAGTGGCGTTTTCATGCAATCGCCGCGAATGCTCA
66 AGCTTTC-GGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
* ** * * *
8145837 AGTCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACGTACTTCAGCCGAACGACACCGTTTTCTG
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTG
* * *
8145902 AGCTTTCGGGGATTTAGTGGCGTTTTTATTAAAGCGTCGCTAATACTTA
66 AGCTTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
* * *
8145951 GGGATTTAGCGGCGTTTTTGTGAAAGCGCCAC-AACAATACTTCAGCCCAACAACGCCGTTTTCT
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAC-ATACTTCAGCCCAACGACGCCGTTTTCT
* * * *
8146015 GAGCTTTCGAGGATTTAGTAGCGTTTTTATTAAAGCGCCGTTAATACTCA
65 GAGCTTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
* * * * *
8146065 GGGATTTAACGGCATTTTTGTGAAAGCGCCACAATA-ATACTTCAGCCCAACGACGTCGTTTTCT
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAA-ACATACTTCAGCCCAACGACGCCGTTTTCT
** * * * * * *
8146129 GAGC-TGAGAAGGATTTAGTGGCGTTTTTTTGTATGCGCCACTAATGCTCA
65 GAGCTTTCG-GGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
** * * * *
8146179 GGTCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGTCGTTTTTTT
1 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTG
* * * *
8146244 AGCTTTCGGGGATTTGGTGGTGTTTTTATG-AAGCGCCACTAATACTGA
66 AGCTTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
8146292 GGGATTTA
1 GGGATTTA
8146300 AAATAATTTA
Statistics
Matches: 392, Mismatches: 64, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
113 27 0.07
114 352 0.90
115 12 0.03
116 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (114 bp):
GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTG
AGCTTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCA
Found at i:8146547 original size:15 final size:14
Alignment explanation
Indices: 8146527--8146560 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8146517 TAAGTTTTAT
8146527 AGATTATGGAATTAG
1 AGATTATGG-ATTAG
8146542 AGATTATGGATTAG
1 AGATTATGGATTAG
*
8146556 GGATT
1 AGATT
8146561 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (14 bp):
AGATTATGGATTAG
Found at i:8146609 original size:21 final size:21
Alignment explanation
Indices: 8146583--8146645 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
8146573 TTAATGTGAT
*
8146583 TTAAGGTTTATGGGTTAGGGG
1 TTAAGGATTATGGGTTAGGGG
*
8146604 TTAAGGGTTATGGGTTA-GGG
1 TTAAGGATTATGGGTTAGGGG
*
8146624 TTAGGGATTA--GGTTAGGGG
1 TTAAGGATTATGGGTTAGGGG
8146643 TTA
1 TTA
8146646 GATGTTAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 5 0.13
19 6 0.16
20 11 0.29
21 16 0.42
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.37
Consensus pattern (21 bp):
TTAAGGATTATGGGTTAGGGG
Found at i:8146610 original size:8 final size:7
Alignment explanation
Indices: 8146594--8146646 Score: 58
Period size: 7 Copynumber: 8.0 Consensus size: 7
8146584 TAAGGTTTAT
8146594 GGGTTAG
1 GGGTTAG
*
8146601 GGGTTAA
1 GGGTTAG
*
8146608 GGGTTAT
1 GGGTTAG
8146615 GGGTTA-
1 GGGTTAG
8146621 GGGTTAG
1 GGGTTAG
*
8146628 GGATTA-
1 GGGTTAG
8146634 -GGTTAG
1 GGGTTAG
8146640 GGGTTAG
1 GGGTTAG
8146647 ATGTTAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 4 0.10
6 6 0.15
7 29 0.74
ACGTcount: A:0.19, C:0.00, G:0.49, T:0.32
Consensus pattern (7 bp):
GGGTTAG
Found at i:8146625 original size:13 final size:13
Alignment explanation
Indices: 8146594--8146646 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
8146584 TAAGGTTTAT
8146594 GGGTTAGGGGTTAA
1 GGGTTAGGGGTT-A
*
8146608 GGGTTATGGGTTA
1 GGGTTAGGGGTTA
*
8146621 GGGTTAGGGATTA
1 GGGTTAGGGGTTA
8146634 -GGTTAGGGGTTA
1 GGGTTAGGGGTTA
8146646 G
1 G
8146647 ATGTTAAGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
12 11 0.32
13 12 0.35
14 11 0.32
ACGTcount: A:0.19, C:0.00, G:0.49, T:0.32
Consensus pattern (13 bp):
GGGTTAGGGGTTA
Found at i:8146758 original size:7 final size:7
Alignment explanation
Indices: 8146746--8146807 Score: 70
Period size: 7 Copynumber: 8.9 Consensus size: 7
8146736 TAAATAAGGT
8146746 TTAGGGG
1 TTAGGGG
8146753 TTAGGGG
1 TTAGGGG
*
8146760 TTAGAGG
1 TTAGGGG
* *
8146767 TCATGGG
1 TTAGGGG
*
8146774 TTAAGGG
1 TTAGGGG
*
8146781 TTAAGGG
1 TTAGGGG
*
8146788 TTAAGGG
1 TTAGGGG
8146795 TTAGGGG
1 TTAGGGG
8146802 TTAGGG
1 TTAGGG
8146808 ATTGGGTTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 48 1.00
ACGTcount: A:0.21, C:0.02, G:0.48, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:8146885 original size:96 final size:96
Alignment explanation
Indices: 8146778--8146962 Score: 228
Period size: 96 Copynumber: 1.9 Consensus size: 96
8146768 CATGGGTTAA
* * * * *
8146778 GGGTTAAGGGTTAAGGGTTAGGGGTTAGGGA-TTGGGTTATGGTTTAAGGTTTAGATTAATTAGT
1 GGGTTAAGGGTTAAGGGTTAGGGATT-GGGAGTCGGGTTAGGGATTAAGATTTAGATTAATTAGT
** * *
8146842 GTTTTTTAATTTATATATTAAATAAAGTTTAG
65 ACTTTTTAATTAACATATTAAATAAAGTTTAG
* * * * *
8146874 GGGTTAGGGGTTAGGGGTTATGGATTTGGAGTCGGGTTAGGGATTAAGATTTGGATTAATTAGTA
1 GGGTTAAGGGTTAAGGGTTAGGGATTGGGAGTCGGGTTAGGGATTAAGATTTAGATTAATTAGTA
8146939 CTTTTTAATTAACATATTAAATAA
66 CTTTTTAATTAACATATTAAATAA
8146963 GTTCTTTATA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
95 3 0.04
96 71 0.96
ACGTcount: A:0.29, C:0.02, G:0.29, T:0.41
Consensus pattern (96 bp):
GGGTTAAGGGTTAAGGGTTAGGGATTGGGAGTCGGGTTAGGGATTAAGATTTAGATTAATTAGTA
CTTTTTAATTAACATATTAAATAAAGTTTAG
Found at i:8147099 original size:20 final size:20
Alignment explanation
Indices: 8147059--8147101 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8147049 ATAATAATTT
**
8147059 AAAATTGTAAAAATTGTAAA
1 AAAATTGTAAAAATTACAAA
*
8147079 AAAATTGTCAAAATTACAAA
1 AAAATTGTAAAAATTACAAA
8147099 AAA
1 AAA
8147102 TAAAATGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (20 bp):
AAAATTGTAAAAATTACAAA
Found at i:8147130 original size:17 final size:17
Alignment explanation
Indices: 8147097--8147135 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
8147087 CAAAATTACA
*
8147097 AAAAATAAAATGAAAAT
1 AAAAATAAAAAGAAAAT
8147114 AAAAATAAAAA-AGAAAT
1 AAAAATAAAAAGA-AAAT
8147131 AAAAA
1 AAAAA
8147136 AACTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAATAAAAAGAAAAT
Found at i:8147971 original size:198 final size:197
Alignment explanation
Indices: 8147620--8148022 Score: 691
Period size: 198 Copynumber: 2.0 Consensus size: 197
8147610 TGTATAAACG
* *
8147620 CCGCAATTTACAGAATTGTTTAGGAAAATGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
1 CCGCAAATTACAGAATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
* *
8147685 AGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATGCCGTTTTCTCTAAAATGCCATGA
66 AGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCATGA
* *
8147750 GTTTGAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATATAAA
131 GTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACAAA
8147815 AA
196 AA
*
8147817 CCGCAAATTACAGAAATTGTTTAGGAAAACGGCTTCGTTTTCTTATTT-ACTTTTAGTGGCGCTT
1 CCGCAAATTACAG-AATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAAC-TTTAGTGGCGCTT
8147881 TTAGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCAT
64 TTAGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCAT
*
8147946 GAGTTTCAGTTAACTGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACA
129 GAGTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACA
**
8148011 AACG
194 AAAA
8148015 CCGCAAAT
1 CCGCAAAT
8148023 GGGTTAATTA
Statistics
Matches: 194, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
197 14 0.07
198 180 0.93
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (197 bp):
CCGCAAATTACAGAATTGTTTAGGAAAACGGCTCCGTTTTCTTATTTAACTTTAGTGGCGCTTTT
AGTAAACGCCGCAAAAATGTTTCAATTTTTATGGAGACGATGCCGTTTTCTCTAAAACGCCATGA
GTTTCAGTTAAATGATCGGGAAACGACAGCGTTTGATCATATTACTAGTGGCGCTGGTATACAAA
AA
Found at i:8149284 original size:18 final size:19
Alignment explanation
Indices: 8149261--8149304 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
8149251 CAGAAATTTC
*
8149261 TGTTTCTCTAGCA-TGTTA
1 TGTTTCTCTACCATTGTTA
* *
8149279 TGTTTCTGTACCATTTTTA
1 TGTTTCTCTACCATTGTTA
8149298 TGTTTCT
1 TGTTTCT
8149305 TTATTTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (19 bp):
TGTTTCTCTACCATTGTTA
Found at i:8149323 original size:7 final size:7
Alignment explanation
Indices: 8149308--8149371 Score: 69
Period size: 7 Copynumber: 9.3 Consensus size: 7
8149298 TGTTTCTTTA
8149308 TTTTCTG
1 TTTTCTG
8149315 TTTT-T-
1 TTTTCTG
*
8149320 TGTTCTG
1 TTTTCTG
8149327 TTTTCTG
1 TTTTCTG
*
8149334 TTTTCTA
1 TTTTCTG
*
8149341 TTTTTTG
1 TTTTCTG
8149348 TTTTCTG
1 TTTTCTG
*
8149355 TTTTGCTA
1 TTTT-CTG
8149363 TTTTCTG
1 TTTTCTG
8149370 TT
1 TT
8149372 GAATGAAGTG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
5 3 0.07
6 2 0.04
7 35 0.76
8 6 0.13
ACGTcount: A:0.03, C:0.11, G:0.12, T:0.73
Consensus pattern (7 bp):
TTTTCTG
Found at i:8149351 original size:21 final size:21
Alignment explanation
Indices: 8149308--8149371 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
8149298 TGTTTCTTTA
*
8149308 TTTTCTGTTTT-T-TGTTCTG
1 TTTTCTGTTTTCTATTTTCTG
*
8149327 TTTTCTGTTTTCTATTTTTTG
1 TTTTCTGTTTTCTATTTTCTG
8149348 TTTTCTGTTTTGCTATTTTCTG
1 TTTTCTGTTTT-CTATTTTCTG
8149370 TT
1 TT
8149372 GAATGAAGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
19 11 0.28
20 1 0.03
21 16 0.41
22 11 0.28
ACGTcount: A:0.03, C:0.11, G:0.12, T:0.73
Consensus pattern (21 bp):
TTTTCTGTTTTCTATTTTCTG
Found at i:8149961 original size:13 final size:13
Alignment explanation
Indices: 8149943--8150097 Score: 82
Period size: 13 Copynumber: 11.8 Consensus size: 13
8149933 TTTTACTCTT
*
8149943 AATATATTACTTG
1 AATATATTACTTA
8149956 AATATATTACTTA
1 AATATATTACTTA
*
8149969 AATAAATTACTTA
1 AATATATTACTTA
*
8149982 AATACATTACTTA
1 AATATATTACTTA
*
8149995 CTAA-A-ATTTCGTTA
1 --AATATATTAC-TTA
* *
8150009 AATTTTTTACTTA
1 AATATATTACTTA
* *
8150022 AATATGTTACTCA
1 AATATATTACTTA
* *
8150035 GATACATTACTTA
1 AATATATTACTTA
* **
8150048 CTAAAAT-TTGGTTA
1 --AATATATTACTTA
* *
8150062 AATTTTTTACTTA
1 AATATATTACTTA
* *
8150075 AATATGTTATTTA
1 AATATATTACTTA
*
8150088 AATACATTAC
1 AATATATTAC
8150098 CCGCTATAAA
Statistics
Matches: 105, Mismatches: 29, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
12 5 0.05
13 84 0.80
14 12 0.11
15 4 0.04
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:8150019 original size:53 final size:53
Alignment explanation
Indices: 8149962--8150097 Score: 218
Period size: 53 Copynumber: 2.6 Consensus size: 53
8149952 CTTGAATATA
**
8149962 TTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
* * *
8150015 TTACTTAAATATGTTACTCAGATACATTACTTACTAAAATTTGGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
*
8150068 TTACTTAAATATGTTATTTAAATACATTAC
1 TTACTTAAATATGTTACTTAAATACATTAC
8150098 CCGCTATAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 75 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (53 bp):
TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
Found at i:8150266 original size:9 final size:9
Alignment explanation
Indices: 8150242--8150492 Score: 175
Period size: 9 Copynumber: 28.8 Consensus size: 9
8150232 TATGTACAAG
8150242 AACTTACAT
1 AACTTACAT
* *
8150251 AATTTACAC
1 AACTTACAT
8150260 AACTTACAT
1 AACTTACAT
*
8150269 AACCTACAT
1 AACTTACAT
8150278 AACTTACAT
1 AACTTACAT
8150287 AA--TACA-
1 AACTTACAT
*
8150293 AAGGTTACAT
1 AA-CTTACAT
* *
8150303 AACTGAAAT
1 AACTTACAT
* *
8150312 AGCTTACAC
1 AACTTACAT
8150321 AACTTACAT
1 AACTTACAT
8150330 AACTTACAT
1 AACTTACAT
*
8150339 AACTTACAG
1 AACTTACAT
* *
8150348 AAGTTATAT
1 AACTTACAT
*
8150357 AATACATA-AT
1 -A-ACTTACAT
8150367 AACTTAC--
1 AACTTACAT
8150374 AACTTACAT
1 AACTTACAT
*
8150383 AACATACAT
1 AACTTACAT
* **
8150392 TACTTTGAT
1 AACTTACAT
8150401 AACTTACAT
1 AACTTACAT
*
8150410 AAGTTACAT
1 AACTTACAT
*
8150419 AA--TACAC
1 AACTTACAT
8150426 AACTTACAT
1 AACTTACAT
** *
8150435 AGTTTACTT
1 AACTTACAT
8150444 AA--TACAT
1 AACTTACAT
8150451 AACTTACAT
1 AACTTACAT
8150460 AACTT--AT
1 AACTTACAT
*
8150467 ACACGTACAT
1 A-ACTTACAT
8150477 AACTTACAT
1 AACTTACAT
*
8150486 AATTTAC
1 AACTTAC
8150493 TTAATACATA
Statistics
Matches: 185, Mismatches: 41, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
6 2 0.01
7 26 0.14
8 7 0.04
9 139 0.75
10 8 0.04
11 3 0.02
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:8150435 original size:25 final size:25
Alignment explanation
Indices: 8150399--8150503 Score: 115
Period size: 25 Copynumber: 4.2 Consensus size: 25
8150389 CATTACTTTG
* *
8150399 ATAACTTACATAAGTTACATAATAC
1 ATAACTTACATAACTTACTTAATAC
* **
8150424 ACAACTTACATAGTTTACTTAATAC
1 ATAACTTACATAACTTACTTAATAC
8150449 ATAACTTACATAACTTA--TACACGTAC
1 ATAACTTACATAACTTACTTA-A--TAC
*
8150475 ATAACTTACATAATTTACTTAATAC
1 ATAACTTACATAACTTACTTAATAC
8150500 ATAA
1 ATAA
8150504 ATATATATCA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.03
24 1 0.01
25 42 0.63
26 19 0.28
27 1 0.01
28 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (25 bp):
ATAACTTACATAACTTACTTAATAC
Found at i:8150492 original size:51 final size:50
Alignment explanation
Indices: 8150399--8150503 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 50
8150389 CATTACTTTG
* * *
8150399 ATAACTTACATAAGTTACATAATACACAACTTACATAGTTTACTTAATAC
1 ATAACTTACATAACTTACACAATACACAACTTACATAATTTACTTAATAC
* * *
8150449 ATAACTTACATAACTTATACACGTACATAACTTACATAATTTACTTAATAC
1 ATAACTTACATAACTTACACA-ATACACAACTTACATAATTTACTTAATAC
8150500 ATAA
1 ATAA
8150504 ATATATATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 18 0.38
51 30 0.62
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.34
Consensus pattern (50 bp):
ATAACTTACATAACTTACACAATACACAACTTACATAATTTACTTAATAC
Found at i:8155905 original size:23 final size:23
Alignment explanation
Indices: 8155861--8155905 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8155851 GAACTCCATT
* *
8155861 TTCTGTCATATCAATTATTCAAG
1 TTCTGTCATATCAAATAATCAAG
8155884 TTCTGTTCATA-CAAATAATCAA
1 TTCTG-TCATATCAAATAATCAA
8155906 TAAGGAGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.40
Consensus pattern (23 bp):
TTCTGTCATATCAAATAATCAAG
Found at i:8157760 original size:14 final size:14
Alignment explanation
Indices: 8157741--8157770 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8157731 AGGTTAAGAT
*
8157741 ATAATTTGTTTTAA
1 ATAATTTATTTTAA
8157755 ATAATTTATTTTAA
1 ATAATTTATTTTAA
8157769 AT
1 AT
8157771 TCTAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (14 bp):
ATAATTTATTTTAA
Found at i:8163698 original size:12 final size:12
Alignment explanation
Indices: 8163681--8163712 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8163671 ATATGAATGG
8163681 AATAATAATAGT
1 AATAATAATAGT
*
8163693 AATAATAATATT
1 AATAATAATAGT
8163705 AATAATAA
1 AATAATAA
8163713 CAATAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:8166094 original size:38 final size:38
Alignment explanation
Indices: 8166030--8166103 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
8166020 TTTAATTGAT
*
8166030 TTTTTAAAATTTAAAAATTCAAAAAAT-ATATAAAAATA
1 TTTTTAAAAATTAAAAATTCAAAAAATGAT-TAAAAATA
* *
8166068 TTTTTAAAAATTACAAA-TCATTAAAATGATTAAAAA
1 TTTTTAAAAATTAAAAATTCA-AAAAATGATTAAAAA
8166104 GTATAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
37 3 0.10
38 26 0.84
39 2 0.06
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (38 bp):
TTTTTAAAAATTAAAAATTCAAAAAATGATTAAAAATA
Found at i:8166359 original size:5 final size:5
Alignment explanation
Indices: 8166346--8166396 Score: 75
Period size: 5 Copynumber: 10.2 Consensus size: 5
8166336 TTAATATAAA
* * *
8166346 TTTAT TTCAT TTCAT TTCAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
8166396 T
1 T
8166397 ACTATTTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:8166404 original size:15 final size:15
Alignment explanation
Indices: 8166354--8166403 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8166344 AATTTATTTC
* * *
8166354 ATTTCATTTCATTTT
1 ATTTTATTTTATTCT
*
8166369 ATTTTATTTTATTTT
1 ATTTTATTTTATTCT
8166384 ATTTTATTTTATTACT
1 ATTTTATTTTATT-CT
8166400 ATTT
1 ATTT
8166404 AGGAATTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 26 0.84
16 5 0.16
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (15 bp):
ATTTTATTTTATTCT
Found at i:8174429 original size:132 final size:133
Alignment explanation
Indices: 8174250--8174530 Score: 467
Period size: 132 Copynumber: 2.1 Consensus size: 133
8174240 ACTGCAACTG
* *
8174250 TAGGGAGATAAGA-CTTACAATCTTCAATCTATTCCGCTGTTGCCCAGGGAAGTAGAATTACTAG
1 TAGGGAGATAAGATCTGACAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTAG
*
8174314 CTTCAATGTACTCCACTATAACCACAGGGATGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
66 CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
8174379 GCT
131 GCT
* * * *
8174382 TAGGGAAATAAGATCTGA-AATCTTCAATCTGTTCCACTGTTGTCCAGGGAAGTAGAATTACTGG
1 TAGGGAGATAAGATCTGACAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTAG
* *
8174446 CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCATTACT
66 CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
8174511 GCT
131 GCT
8174514 TAGGGAGATAAGATCTG
1 TAGGGAGATAAGATCTG
8174531 CTTACTTAGT
Statistics
Matches: 138, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 135 0.98
133 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (133 bp):
TAGGGAGATAAGATCTGACAATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTAG
CTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACT
GCT
Found at i:8175005 original size:44 final size:44
Alignment explanation
Indices: 8174515--8175006 Score: 258
Period size: 44 Copynumber: 11.3 Consensus size: 44
8174505 ATTACTGCTT
* *
8174515 AGGGAGATAAGA-TCTGCTTACTTAGTCTGCTCCACTACAACTTT
1 AGGGAGATAAGACT-TGCTTACTTAGTCTGCTCCACTGCAACTTC
* ** * *
8174559 AGGGAGATAAGACTAG---AC-GCGATCTGCT-CTCTGCAACTTT
1 AGGGAGATAAGACTTGCTTACTTAG-TCTGCTCCACTGCAACTTC
* * * * * *
8174599 AGAGAGATAATATCTGAGATT--TTAATCCGCTCCACTGCAACTTC
1 AGGGAGATAAGA-CT-TGCTTACTTAGTCTGCTCCACTGCAACTTC
* * * *
8174643 AGGGAGAT-AGAATTG-TCAGCTTTAATCTGCTCCACTGTAACTTC
1 AGGGAGATAAGACTTGCTTA-C-TTAGTCTGCTCCACTGCAACTTC
* * *
8174687 AGGGAGATAAGATTTGC-CATCTTCAGTCTGCTTCACTGCAACTTC
1 AGGGAGATAAGACTTGCTTA-CTT-AGTCTGCTCCACTGCAACTTC
8174732 -GGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
1 AGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
* * * * * * *
8174776 AGAGAGATAAGACTAG-ATGC-GA-TATGCT-CTCTGCAACTTC
1 AGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
** * * * ** * *
8174816 AGAAAGATAAGATCTAAGATT--TTAATCCACTCCACCGTAACTTC
1 AGGGAGATAAGA-CT-TGCTTACTTAGTCTGCTCCACTGCAACTTC
* *
8174860 AGGGAGATAGGA-TTGTCGGTT--TTAATCTGCTCCACTGCAACTTC
1 AGGGAGATAAGACTTG-C--TTACTTAGTCTGCTCCACTGCAACTTC
* *
8174904 AGGGAGATAAGATTTG-TCATCTTCAGTCTGC-CTCACTGCAACTTC
1 AGGGAGATAAGACTTGCTTA-CTT-AGTCTGCTC-CACTGCAACTTC
* * *
8174949 A-AGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTT
1 AGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
*
8174993 AGAGAGATAAGACT
1 AGGGAGATAAGACT
8175007 AGATGTGATC
Statistics
Matches: 349, Mismatches: 61, Indels: 76
0.72 0.13 0.16
Matches are distributed among these distances:
40 44 0.13
41 20 0.06
42 8 0.02
43 13 0.04
44 177 0.51
45 84 0.24
46 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTC
Found at i:8175075 original size:44 final size:45
Alignment explanation
Indices: 8174581--8175075 Score: 265
Period size: 44 Copynumber: 11.4 Consensus size: 45
8174571 CTAGACGCGA
* * *
8174581 TCTGCT-CTCTGCAACTTTAGAGAGATAATATCTGAGATTTTAA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
* * *
8174624 TCCGCTCCACTGCAACTTCAGGGAGAT-AGAAT-TGTCAG-CTTTAA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAG-ATCTG--AGATTTTAAG
* * * ** * *
8174668 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
* * * *
8174713 TCTGCTTCACTGCAACTTC-GGGAGGATAAGA-CT-TGCTTACTT-AG
1 TCTGCTCCACTGCAACTTCAGAGA-GATAAGATCTGAGATT--TTAAG
***
8174757 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGA-TGCGA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
* * * *
8174798 TATGCT-CTCTGCAACTTCAGAAAGATAAGATCTAAGATTTTAA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
** * * * * * *
8174841 TCCACTCCACCGTAACTTCAGGGAGATAGGAT-TGTCGGTTTTAA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG-AGATTTTAAG
* * ** * *
8174885 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
* *
8174930 TCTGC-CTCACTGCAACTTCA-AGAGGATAAGA-CT-TGCTTACTT-AG
1 TCTGCTC-CACTGCAACTTCAGAGA-GATAAGATCTGAGATT--TTAAG
* * * *
8174974 TCTGCTCCACTACAACTTTAGAGAGATAAGA-CT-AGA-TGTGA-
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
* * *
8175015 TCTGCT-CTCTGCAACTTCAGCGAGATAAGATCTGAGATTTTAAT
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
8175059 TC-GCTCCACTGCAACTT
1 TCTGCTCCACTGCAACTT
8175076 TAGGGAAATA
Statistics
Matches: 349, Mismatches: 71, Indels: 63
0.72 0.15 0.13
Matches are distributed among these distances:
40 42 0.12
41 16 0.05
42 8 0.02
43 25 0.07
44 190 0.54
45 68 0.19
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAAG
Found at i:8175089 original size:217 final size:217
Alignment explanation
Indices: 8174520--8175089 Score: 899
Period size: 217 Copynumber: 2.6 Consensus size: 217
8174510 TGCTTAGGGA
* *
8174520 GATAAGA-TCTGCTTACTTAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTAGACGCGATCT
1 GATAAGACT-TGCTTACTTAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTAGATGCGATCT
* *
8174584 GCTCTCTGCAACTTTAGAGAGATAATATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAG
65 GCTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAG
* *
8174649 ATAGAATTGTCAGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGT
130 ATAGGATTGTCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGT
* **
8174714 CTGCTTCACTGCAACTTCGGGAG
195 CTGCCTCACTGCAACTTCAAGAG
* * *
8174737 GATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATG
1 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTAGATGCGATCTG
* * * * *
8174802 CTCTCTGCAACTTCAGAAAGATAAGATCTAAGATTTTAATCCACTCCACCGTAACTTCAGGGAGA
66 CTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
* * *
8174867 TAGGATTGTCGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTC
131 TAGGATTGTCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTC
8174932 TGCCTCACTGCAACTTCAAGAG
196 TGCCTCACTGCAACTTCAAGAG
*
8174954 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTAGATGTGATCTG
1 GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTAGATGCGATCTG
* * * *
8175019 CTCTCTGCAACTTCAGCGAGATAAGATCTGAGATTTTAATTCGCTCCACTGCAACTTTAGGGAAA
66 CTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
8175084 TAGGAT
131 TAGGAT
8175090 CCCAGCCACT
Statistics
Matches: 319, Mismatches: 33, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
217 318 1.00
218 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
GATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTTAGAGAGATAAGACTAGATGCGATCTG
CTCTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
TAGGATTGTCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTC
TGCCTCACTGCAACTTCAAGAG
Found at i:8191175 original size:8 final size:9
Alignment explanation
Indices: 8191140--8191174 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
8191130 AAAAAGAGCA
8191140 ATAAAAAAT
1 ATAAAAAAT
*
8191149 ATAGAAAAT
1 ATAAAAAAT
8191158 ATAAAAAAT
1 ATAAAAAAT
8191167 -TAAAAAAT
1 ATAAAAAAT
8191175 TCAATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:8192284 original size:16 final size:17
Alignment explanation
Indices: 8192249--8192287 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
8192239 AGTGAAAAAT
* *
8192249 GAAAATTTGAAGTGATA
1 GAAAATTAGAAGTCATA
8192266 GAAAATTAGAA-TCATA
1 GAAAATTAGAAGTCATA
8192282 GAAAAT
1 GAAAAT
8192288 ATAATTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.54, C:0.03, G:0.18, T:0.26
Consensus pattern (17 bp):
GAAAATTAGAAGTCATA
Found at i:8196121 original size:22 final size:24
Alignment explanation
Indices: 8196092--8196137 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
8196082 AGTTGATTTG
8196092 GAATTTGTGA-GAAA-ATG-GTTA
1 GAATTTGTGATGAAAGATGTGTTA
8196113 GAATATTGTGATGAAAGATGTGTTA
1 GAAT-TTGTGATGAAAGATGTGTTA
8196138 TCATTATGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 6 0.29
23 4 0.19
24 3 0.14
25 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.28, T:0.35
Consensus pattern (24 bp):
GAATTTGTGATGAAAGATGTGTTA
Found at i:8202590 original size:16 final size:16
Alignment explanation
Indices: 8202569--8202602 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8202559 ACTTATCCCT
8202569 TAAATTTGGTATAAAA
1 TAAATTTGGTATAAAA
8202585 TAAATTTGGTATAAAA
1 TAAATTTGGTATAAAA
8202601 TA
1 TA
8202603 TACTTACCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (16 bp):
TAAATTTGGTATAAAA
Found at i:8202933 original size:13 final size:13
Alignment explanation
Indices: 8202915--8202946 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8202905 TATGAGAAAT
8202915 TAATTAATTACGA
1 TAATTAATTACGA
8202928 TAATTAATTACGA
1 TAATTAATTACGA
*
8202941 TTATTA
1 TAATTA
8202947 TAATGGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (13 bp):
TAATTAATTACGA
Found at i:8204702 original size:37 final size:34
Alignment explanation
Indices: 8204616--8204710 Score: 127
Period size: 34 Copynumber: 2.7 Consensus size: 34
8204606 AATTTTACAA
*
8204616 TTTTTACAAAACAGTCCCTAAAATTTCATCTTTG
1 TTTTTACAAAATAGTCCCTAAAATTTCATCTTTG
*
8204650 TTTTTACAAAATAGTCCCTAAAATTTCATTTTTGTAG
1 TTTTTACAAAATAGTCCCTAAAATTTCA-TCTT-T-G
**
8204687 TTTTTACAATTTAGTCCCTAAAAT
1 TTTTTACAAAATAGTCCCTAAAAT
8204711 CCAAACTTTC
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
34 27 0.50
35 3 0.06
36 1 0.02
37 23 0.43
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (34 bp):
TTTTTACAAAATAGTCCCTAAAATTTCATCTTTG
Found at i:8207518 original size:29 final size:30
Alignment explanation
Indices: 8207470--8207548 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
8207460 AAAATAATAT
* * **
8207470 ATAAATTTAA-ATTTTAAAATAAATTTG-A
1 ATAAATTAAAGATGTTAAAATAAAGCTGAA
* *
8207498 ATAAATTAACGATGTTGAAAT-AAGCTGAA
1 ATAAATTAAAGATGTTAAAATAAAGCTGAA
8207527 ATAAATTAAAGATGTTAAAATA
1 ATAAATTAAAGATGTTAAAATA
8207549 TTTGAAAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 12 0.30
29 28 0.70
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (30 bp):
ATAAATTAAAGATGTTAAAATAAAGCTGAA
Found at i:8209453 original size:50 final size:50
Alignment explanation
Indices: 8209305--8209564 Score: 209
Period size: 50 Copynumber: 5.2 Consensus size: 50
8209295 TAACTCGTAA
** ** * *
8209305 CTTTAATCTGCTTAACTGTGATGTCGGGGAAGTAAGATTCGTCATTGTAG
1 CTTTAATCTTTTTAACTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTAG
* * ** * *** * *
8209355 CTTCAATCTATTCCACTGCACTGCCAAGGAAAGTAAGATTCGTTGTTGTAG
1 CTTTAATCTTTTTAACTGCAATG-TTGGGGAAGTAAGATTCGTCGTTGTAG
* * *
8209406 TTTTAATCTTTTTAATTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTGG
1 CTTTAATCTTTTTAACTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTAG
** ** *
8209456 CTTTAATCTTTTCCACTGCACCGTCT-GGGAAGTAAGATTCG-CTATTGTAG
1 CTTTAATCTTTTTAACTGCAATGT-TGGGGAAGTAAGATTCGTC-GTTGTAG
* * ** * *
8209506 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGCGAGATTCGCCGTTGTGG
1 CTTTAATCTTTTTAACTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTAG
8209556 CTTTAATCT
1 CTTTAATCT
8209565 GTTCCACTAT
Statistics
Matches: 160, Mismatches: 45, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
49 1 0.01
50 120 0.75
51 39 0.24
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (50 bp):
CTTTAATCTTTTTAACTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTAG
Found at i:8209529 original size:100 final size:101
Alignment explanation
Indices: 8209305--8209593 Score: 348
Period size: 100 Copynumber: 2.9 Consensus size: 101
8209295 TAACTCGTAA
** * * * *
8209305 CTTTAATCTGCTTAACTGTGATGTCGGGGAAGTAAGATTCGTCATTGTAGCTTCAATCTATTCCA
1 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGTAAGATTCGTCGTTGTGGCTTTAATCTATTCCA
* * *
8209370 CTGCACTGCCAAGGAAAGTAAGATTCGTTGTTGTAG
66 CTGCACCGCCAAGGAAAGTAAGATTCGCTATTGTAG
* * * * *
8209406 TTTTAATCTTTTTAATTGCAATGTTGGGGAAGTAAGATTCGTCGTTGTGGCTTTAATCTTTTCCA
1 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGTAAGATTCGTCGTTGTGGCTTTAATCTATTCCA
* * *
8209471 CTGCACCGTC-TGGGAAGTAAGATTCGCTATTGTAG
66 CTGCACCGCCAAGGAAAGTAAGATTCGCTATTGTAG
** * *
8209506 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGCGAGATTCGCCGTTGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGTAATGTCGGGGAAGTAAGATTCGTCGTTGTGGCTTTAATCTATTCCA
** *
8209571 CTATACCGCCTA-GAAAGTAAGAT
66 CTGCACCGCCAAGGAAAGTAAGAT
8209594 CTGTAATTCT
Statistics
Matches: 157, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
100 95 0.61
101 62 0.39
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (101 bp):
CTTTAATCTTTTTAACTGTAATGTCGGGGAAGTAAGATTCGTCGTTGTGGCTTTAATCTATTCCA
CTGCACCGCCAAGGAAAGTAAGATTCGCTATTGTAG
Found at i:8209717 original size:46 final size:46
Alignment explanation
Indices: 8209588--8210247 Score: 232
Period size: 46 Copynumber: 15.1 Consensus size: 46
8209578 GCCTAGAAAG
* *
8209588 TAAGATCTGTAATTCTTCGGTCTATTCTACTGTAATCTCAGGGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* * **
8209634 TAAGACCTG--A--CTTCAATCTGGTCCACTGTAA-CTTCAGGGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATC-TCAGGGAGA
*
8209676 TAAGATCTGTAATTCTTCGATTTATTCCACTGTAATCTCAGGGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* * * * * *
8209722 TAATACCTG--A---TGCGATCTACTCTACTGTAA-CTTCAGAGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATC-TCAGGGAGA
* * *** ** *
8209763 TAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAA--TCAGTAAAA
1 TAAGAT-CTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* * ** *
8209805 TAGGA--T-T-ATTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TAAGATCTGTAATT--CTTCGATCTATTCCACTGTAATCTCAGGGAGA
*
8209849 TAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* * * * * *
8209895 TAAGACCTG--A---TGCAATCTACTCTACTGTAA-CTTCAAAGG-GA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATC-TC-AGGGAGA
* * *** *
8209936 TAAGATCCT-TTATT-TT-AATCCGCTCCACTGTAAT-T-AGGGAAA
1 TAAGAT-CTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* * * * ** *
8209978 TAGGA--T-TACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TAAGATCTGTAAT-TCTTCGATCTATTCCACTGTAATCTCAGGGAGA
*
8210022 TAAGATCTGTAATTCTTC-AGTCTATTCCACTGTAATCTCAGAGAGA
1 TAAGATCTGTAATTCTTCGA-TCTATTCCACTGTAATCTCAGGGAGA
* * * * *
8210068 TAAGACCTG--A---TGCGATCTACTCTACTGTAA-CTTCAGAGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATC-TCAGGGAGA
* *** * * *
8210109 TAAGATCCT-TTATT-TT--ACTCCGCTCCACTGTAATCTCAAGAAAA
1 TAAGAT-CTGTAATTCTTCGA-TCTATTCCACTGTAATCTCAGGGAGA
* * * ** *
8210153 TAGGATTACTG---GT-TTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TAAGA-T-CTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
* *
8210197 TAAGATCTGTAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGA
1 TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
8210243 TAAGA
1 TAAGA
8210248 CCTGGTGCGA
Statistics
Matches: 460, Mismatches: 97, Indels: 114
0.69 0.14 0.17
Matches are distributed among these distances:
38 3 0.01
39 5 0.01
40 3 0.01
41 89 0.19
42 92 0.20
43 10 0.02
44 98 0.21
45 10 0.02
46 142 0.31
47 5 0.01
48 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (46 bp):
TAAGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGA
Found at i:8209905 original size:173 final size:174
Alignment explanation
Indices: 8209644--8210377 Score: 1195
Period size: 173 Copynumber: 4.2 Consensus size: 174
8209634 TAAGACCTGA
* * * *
8209644 CTTCAATCTGGTCCACTGTAA-CTTCAGGGAGATAAGATCTGTAATTCTTCGATTTATTCCACTG
1 CTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTG
*
8209708 TAATCTCAGGGAGATAATACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
65 TAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
* *
8209773 TATTTTAATCCGCTCCACTGTAA-TCAGTAAAATAGGATTATTGG
130 TATTTTAATCCGCTCCACTGTAACTCAGGAAAATAGGATTACTGG
8209817 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGT
* * *
8209882 AATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAAAGGGATAAGATCCTTT
66 AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
8209947 ATTTTAATCCGCTCCACTGTAA-TTAGGGAAATAGGATTACTGG
131 ATTTTAATCCGCTCCACTGTAACTCAGGAAAATAGGATTACTGG
*
8209990 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCAGTCTATTCCACTGT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGT
*
8210055 AATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
8210120 ATTTTACTCCGCTCCACTGTAATCTCAAGAAAATAGGATTACTGG
131 ATTTTAATCCGCTCCACTGTAA-CTCAGGAAAATAGGATTACTGG
* *
8210165 TTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTAT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGT
* *
8210230 AATCTCAGGGAGATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
* *
8210295 ATTTTAATCCACTCCACTGTAATCTCAGGGAAATAGGATTACTGG
131 ATTTTAATCCGCTCCACTGTAA-CTCAGGAAAATAGGATTACTGG
* * *
8210340 TTTCAATTTGCTCCGCTGTAATCTCAAGGAGATAAGAT
1 CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
8210378 TTCTCGCTTC
Statistics
Matches: 525, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
173 305 0.58
174 1 0.00
175 219 0.42
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (174 bp):
CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGT
AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCCGCTCCACTGTAACTCAGGAAAATAGGATTACTGG
Found at i:8210272 original size:348 final size:348
Alignment explanation
Indices: 8209616--8210377 Score: 1232
Period size: 348 Copynumber: 2.2 Consensus size: 348
8209606 GGTCTATTCT
* * * * * *
8209616 ACTGTAATCTCAGGGAGATAAGA--CCTGACTTCAATCTGGTCCACTGTAA-CTTCAGGGAGATA
1 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAGATA
* * *
8209678 AGATCTGTAATTCTTCGATTTATTCCACTGTAATCTCAGGGAGATAATACCTGATGCGATCTACT
65 AGATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACT
8209743 CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCAGTAAAATAG
130 CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCAGTAAAATAG
*
8209808 GATTATTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTA
195 GATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTA
* *
8209873 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAAAGGGATA
260 TTCCACTATAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAAAGAGATA
*
8209938 AGATCCTTTATTTTAATCCGCTCC
325 AGATCCTTTATTTTAATCCACTCC
8209962 ACTGTAAT-T-AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
1 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
8210025 GATCTGTAATTCTTC-AGTCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACT
66 GATCTGTAATTCTTCGA-TCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACT
*
8210089 CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTACTCCGCTCCACTGTAATCTCAAG-AAAA
130 CTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA--TC-AGTAAAA
*
8210153 TAGGATTACTGGTTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGT
192 TAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGT
* * * *
8210218 CTATTCCACTATAATCTCAGGGAGATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGAGAG
257 CTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAAAGAG
8210283 ATAAGATCCTTTATTTTAATCCACTCC
322 ATAAGATCCTTTATTTTAATCCACTCC
* * *
8210310 ACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGCTCCGCTGTAATCTCAAGGAGATAA
1 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
8210375 GAT
66 GAT
8210378 TTCTCGCTTC
Statistics
Matches: 385, Mismatches: 22, Indels: 14
0.91 0.05 0.03
Matches are distributed among these distances:
344 10 0.03
345 2 0.01
346 153 0.40
347 1 0.00
348 162 0.42
349 3 0.01
350 54 0.14
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (348 bp):
ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
GATCTGTAATTCTTCGATCTATTCCACTGTAATCTCAGAGAGATAAGACCTGATGCGATCTACTC
TACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCAGTAAAATAGG
ATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGTAATTCTTCGGTCTAT
TCCACTATAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAAAGAGATAA
GATCCTTTATTTTAATCCACTCC
Found at i:8210359 original size:44 final size:44
Alignment explanation
Indices: 8210306--8210403 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
8210296 TTTTAATCCA
* * * * *
8210306 CTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTG
1 CTCCACTGTAATCTCAAGGAAATAAGATTACTCGCTTCAATCTG
* * *
8210350 CTCCGCTGTAATCTCAAGGAGATAAGATTTCTCGCTTCAATCTG
1 CTCCACTGTAATCTCAAGGAAATAAGATTACTCGCTTCAATCTG
8210394 CTCCACTGTA
1 CTCCACTGTA
8210404 CCCTTAGGGA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (44 bp):
CTCCACTGTAATCTCAAGGAAATAAGATTACTCGCTTCAATCTG
Found at i:8212921 original size:38 final size:37
Alignment explanation
Indices: 8212852--8212925 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 37
8212842 TTTTCATAAT
* *
8212852 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
8212889 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAAA
8212926 TCCACACATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.39
38 16 0.48
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:8213080 original size:23 final size:23
Alignment explanation
Indices: 8213054--8213128 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
8213044 ATAAGTGCCA
*
8213054 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
8213077 CACTGAAATGTAGCCAAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
8213100 CACTGAAATGTAGCTGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
8213123 CTCTGA
1 CACTGA
8213129 TCAATAACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:8214183 original size:23 final size:24
Alignment explanation
Indices: 8214156--8214202 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8214146 TTAGCCTCCC
*
8214156 CATTTTTACCTTTTCATT-TTTTT
1 CATTTTCACCTTTTCATTCTTTTT
*
8214179 CATTTTCACTTTTTCATTCTTTTT
1 CATTTTCACCTTTTCATTCTTTTT
8214203 TCATCTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.13, C:0.19, G:0.00, T:0.68
Consensus pattern (24 bp):
CATTTTCACCTTTTCATTCTTTTT
Found at i:8214223 original size:20 final size:19
Alignment explanation
Indices: 8214181--8214222 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8214171 ATTTTTTTCA
*
8214181 TTTTCACTTTTTCATTCTT
1 TTTTCACTTCTTCATTCTT
8214200 TTTTCATCTTCTTC-TTCTT
1 TTTTCA-CTTCTTCATTCTT
8214219 TTTT
1 TTTT
8214223 TTTTGACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTCACTTCTTCATTCTT
Found at i:8219143 original size:29 final size:30
Alignment explanation
Indices: 8219095--8219173 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
8219085 AAAATAATAT
* * **
8219095 ATAAATTTAA-ATTTTAAAATAAATTTG-A
1 ATAAATTAAAGATGTTAAAATAAAGCTGAA
* *
8219123 ATAAATTAACGATGTTGAAAT-AAGCTGAA
1 ATAAATTAAAGATGTTAAAATAAAGCTGAA
8219152 ATAAATTAAAGATGTTAAAATA
1 ATAAATTAAAGATGTTAAAATA
8219174 TTTGAAAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 12 0.30
29 28 0.70
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (30 bp):
ATAAATTAAAGATGTTAAAATAAAGCTGAA
Found at i:8239103 original size:3 final size:3
Alignment explanation
Indices: 8238998--8239091 Score: 84
Period size: 3 Copynumber: 31.3 Consensus size: 3
8238988 GGATATAAAT
* * * * * * *
8238998 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8239046 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8239091 A
1 A
8239092 ACAAAATAAT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.04
3 67 0.92
4 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8240243 original size:15 final size:15
Alignment explanation
Indices: 8240217--8240249 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8240207 TTTGATGATT
8240217 TTGGGCTATTGGGCTG
1 TTGGGCTATTGGG-TG
8240233 TTGGG-TATTGGGTG
1 TTGGGCTATTGGGTG
8240247 TTG
1 TTG
8240250 TAATTGGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.06, C:0.06, G:0.45, T:0.42
Consensus pattern (15 bp):
TTGGGCTATTGGGTG
Found at i:8241170 original size:43 final size:42
Alignment explanation
Indices: 8241121--8241257 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 42
8241111 CAACCGATGG
8241121 AGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACACAGGA
1 AGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAAC-CAGGA
* * * * * * * *
8241164 AGGCAA-GATCTGCTATCTTCAA-CTAGCTCCATCG-CAGCCAATGA
1 AGGCAAGGCTTTG-T-T-TTCAATCT-GCTTCGTTGTTAACC-AGGA
* *
8241208 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGA
1 AGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAA-CCAGGA
8241251 AGGCAAG
1 AGGCAAG
8241258 ATCTGATTCT
Statistics
Matches: 67, Mismatches: 18, Indels: 18
0.65 0.17 0.17
Matches are distributed among these distances:
42 14 0.21
43 22 0.33
44 16 0.24
45 15 0.22
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (42 bp):
AGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACCAGGA
Found at i:8241332 original size:83 final size:86
Alignment explanation
Indices: 8241103--8241452 Score: 370
Period size: 87 Copynumber: 4.1 Consensus size: 86
8241093 CCTCAATCTA
* * *
8241103 CTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACACAGGAAGGC
1 CTCCACTGCAACCAATGAAGGCAAGGC-TTGTTTTCAATCTGCTTCGTTGTTAACGCAGGAAGGC
*
8241168 AAGATCTGCTATCTTCAACTAG
65 AAGATCTGCTATCTTCAACCAG
* * *
8241190 CTCCA-TCGCAGCCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGG
1 CTCCACT-GCAACCAATGAAGGCAAGGC-TTGTTTTCAATCTGCTTCGTTGTTAACGCAGGAAGG
* *
8241254 CAAGATCTGAT-TCTTTAACCAG
64 CAAGATCTGCTATCTTCAACCAG
* *
8241276 CTCCACTGCAACCAATGAAGGCAAGG-AT-TTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCA
1 CTCCACTGCAACCAATGAAGGCAAGGCTTGTTTTCAATCTGCTTCGTTGTTAACGCAGGAAGGCA
*
8241339 AGATCTGCTGTCTTCAACCAG
66 AGATCTGCTATCTTCAACCAG
* * * * * * * * * *
8241360 CTCTA-TCACAACTGAAAG-AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAA
1 CTCCACT-GCAAC-CAATGAAGGCAAGGCTTGT-T-TTCAATCTGCTTCGTTGTTAACGCAGGAA
** *
8241423 GGCAAGATCTTTTGTCTTCAACCAG
62 GGCAAGATCTGCTATCTTCAACCAG
8241448 CTCCA
1 CTCCA
8241453 TCACAACCGA
Statistics
Matches: 226, Mismatches: 28, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
83 41 0.18
84 27 0.12
85 4 0.02
86 34 0.15
87 68 0.30
88 52 0.23
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (86 bp):
CTCCACTGCAACCAATGAAGGCAAGGCTTGTTTTCAATCTGCTTCGTTGTTAACGCAGGAAGGCA
AGATCTGCTATCTTCAACCAG
Found at i:8241340 original size:170 final size:174
Alignment explanation
Indices: 8241103--8241452 Score: 469
Period size: 170 Copynumber: 2.0 Consensus size: 174
8241093 CCTCAATCTA
* * * *
8241103 CTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACACAGGAAGGC
1 CTCCACTGCAACCAATGAAGGCAAGGC-ATGTTTTCAATCTGCTTCGCTGTTAACACAGGAAGGC
* * * *
8241168 AAGATCTGCTATCTTCAACTAGCTCCATCGCAGC-CAATGAAGGCAAGGCTTTGT-T-TTCGATC
65 AAGATCTGCTATCTTCAACCAGCTCCATCACAACTCAAAG-AGGCAAGG-TTTGTGTCTTCGATC
* * * *
8241230 TGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGAT-TCTTTAACCAG
128 TGCTTCGCTGTCAATGCAGAAAGGCAAGATCTGATGTCTTCAACCAG
*
8241276 CTCCACTGCAACCAATGAAGGCAAGG-AT-TTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCA
1 CTCCACTGCAACCAATGAAGGCAAGGCATGTTTTCAATCTGCTTCGCTGTTAACACAGGAAGGCA
* * *
8241339 AGATCTGCTGTCTTCAACCAGCTCTATCACAACTGAAAGAGGCAAGGTTTGTGTCTTCGATCTGC
66 AGATCTGCTATCTTCAACCAGCTCCATCACAACTCAAAGAGGCAAGGTTTGTGTCTTCGATCTGC
**
8241404 TTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTCAACCAG
131 TTCGCTGTCAATGCAGAAAGGCAAGATCTGATGTCTTCAACCAG
8241448 CTCCA
1 CTCCA
8241453 TCACAACCGA
Statistics
Matches: 155, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
169 5 0.03
170 70 0.45
171 41 0.26
172 15 0.10
173 24 0.15
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (174 bp):
CTCCACTGCAACCAATGAAGGCAAGGCATGTTTTCAATCTGCTTCGCTGTTAACACAGGAAGGCA
AGATCTGCTATCTTCAACCAGCTCCATCACAACTCAAAGAGGCAAGGTTTGTGTCTTCGATCTGC
TTCGCTGTCAATGCAGAAAGGCAAGATCTGATGTCTTCAACCAG
Found at i:8241396 original size:43 final size:43
Alignment explanation
Indices: 8241347--8241484 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 43
8241337 CAAGATCTGC
* *
8241347 TGTCTTCAACCAGCTCTATCACAACTGAAAGAGGCAAGGTTTG
1 TGTCTTCAACCAGCTCCATCACAACTGAAAGAGGCAAGGTTTA
* * * ** * *
8241390 TGTCTTCGATCTGCTTCGC-TGTCAA-TGCAGAA-AGGCAAGATCTTT
1 TGTCTTCAACCAGC-TC-CATCACAACTG-A-AAGAGGCAAGGT-TTA
*
8241435 TGTCTTCAACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTA
1 TGTCTTCAACCAGCTCCATCACAACTGAAAGAGGCAAGGTTTA
8241478 TGTCTTC
1 TGTCTTC
8241485 GATCTGCTTC
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
43 25 0.35
44 30 0.42
45 16 0.23
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCCATCACAACTGAAAGAGGCAAGGTTTA
Found at i:8241425 original size:88 final size:85
Alignment explanation
Indices: 8241120--8241520 Score: 432
Period size: 88 Copynumber: 4.6 Consensus size: 85
8241110 GCAACCGATG
* * ** *
8241120 GAGGCAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACACAGGAAGGCAAGATCTGCTATCTTCA
1 GAGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCA
* * * *
8241185 ACTAGCTCCATCGCAGCCAAT
65 ACCAGCTCCATCACAACCAAA
* * *
8241206 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGAT-TCTTT
1 G-AGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTC
* *
8241270 AACCAGCTCCA-CTGCAACCAAT
64 AACCAGCTCCATC-ACAACCAAA
* * *
8241292 GAAGGCAAGG-AT-TTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTGTCTTCA
1 G-AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCA
* *
8241355 ACCAGCTCTATCACAACTGAAA
65 ACCAGCTCCATCACAAC-CAAA
* * **
8241377 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTC
8241442 AACCAGCTCCATCACAACCGAAA
64 AACCAGCTCCATCACAACC-AAA
* * * *
8241465 GAGGCAAGGTTTATGTCTTCGATCTGCTTCACTATCAATGCAGGAAGGCAAGATCT
1 GAGGCAAGG-TT-TGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCT
8241521 TTAACTTCAT
Statistics
Matches: 273, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
83 40 0.15
84 27 0.10
85 6 0.02
86 34 0.12
87 54 0.20
88 107 0.39
89 2 0.01
90 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (85 bp):
GAGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAA
CCAGCTCCATCACAACCAAA
Found at i:8241514 original size:44 final size:44
Alignment explanation
Indices: 8241378--8241516 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 44
8241368 CAACTGAAAG
* * * *
8241378 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAA
1 AGGCAAGGTTTATGTCTTCGATCTGCTTCACTATCAATGCAGGA
* * * * * * * * *
8241422 AGGCAAGATCTTTTGTCTTCAACCAGCTCCA-TCA-CAACCGAAAG-
1 AGGCAAGGT-TTATGTCTTCGATCTGCTTCACT-ATCAA-TGCAGGA
8241466 AGGCAAGGTTTATGTCTTCGATCTGCTTCACTATCAATGCAGGA
1 AGGCAAGGTTTATGTCTTCGATCTGCTTCACTATCAATGCAGGA
8241510 AGGCAAG
1 AGGCAAG
8241517 ATCTTTAACT
Statistics
Matches: 68, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
43 20 0.29
44 31 0.46
45 17 0.25
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTATGTCTTCGATCTGCTTCACTATCAATGCAGGA
Found at i:8242622 original size:21 final size:21
Alignment explanation
Indices: 8242596--8242642 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8242586 GGTATAGCAG
8242596 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
** *
8242617 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
8242638 GATCA
1 GATCA
8242643 ATATTTGGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.11, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:8245814 original size:19 final size:19
Alignment explanation
Indices: 8245790--8245832 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8245780 GTGAAAATCT
* *
8245790 AATGCATATG-ATGCAATG
1 AATGCAAATGCATGAAATG
8245808 CAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
8245828 AATGC
1 AATGC
8245833 CTAAAGAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:8248234 original size:3 final size:3
Alignment explanation
Indices: 8248129--8248222 Score: 84
Period size: 3 Copynumber: 31.3 Consensus size: 3
8248119 GGATATAAAT
* * * * * * *
8248129 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8248177 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8248222 A
1 A
8248223 ACAAAATAAT
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.04
3 67 0.92
4 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8249417 original size:15 final size:15
Alignment explanation
Indices: 8249391--8249423 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8249381 TTTGATGATT
8249391 TTGGGCTATTGGGCTG
1 TTGGGCTATTGGG-TG
8249407 TTGGG-TATTGGGTG
1 TTGGGCTATTGGGTG
8249421 TTG
1 TTG
8249424 TAATTGGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.06, C:0.06, G:0.45, T:0.42
Consensus pattern (15 bp):
TTGGGCTATTGGGTG
Found at i:8255060 original size:30 final size:30
Alignment explanation
Indices: 8255024--8255086 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
8255014 ACTTAACAAG
8255024 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
8255054 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
8255084 CAA
1 CAA
8255087 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:8255136 original size:14 final size:14
Alignment explanation
Indices: 8255117--8255147 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8255107 ATCCAAACAA
8255117 TAACAACAAAATAG
1 TAACAACAAAATAG
*
8255131 TAACAACATAATAG
1 TAACAACAAAATAG
8255145 TAA
1 TAA
8255148 AATGGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (14 bp):
TAACAACAAAATAG
Found at i:8263667 original size:51 final size:52
Alignment explanation
Indices: 8263593--8263690 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 52
8263583 ATGTTGATAA
* * * *
8263593 TGCAAAAAATTATTTTCAGAATATTTTTAGTTGTGGAAAATCTTCTGAATGT
1 TGCAAAAAATTATTTTCAAAATATTTTCAGTTGAGGAAAATCCTCTGAATGT
*
8263645 TGCAAAAAA-TATTTTCAAAATATTTTCGGTTGAGGAAAATCCTCTG
1 TGCAAAAAATTATTTTCAAAATATTTTCAGTTGAGGAAAATCCTCTG
8263691 CTATTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
51 32 0.78
52 9 0.22
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (52 bp):
TGCAAAAAATTATTTTCAAAATATTTTCAGTTGAGGAAAATCCTCTGAATGT
Found at i:8267101 original size:20 final size:21
Alignment explanation
Indices: 8267078--8267116 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8267068 ATTAATCCAT
8267078 TTGATTAAC-AATTAATTAAA
1 TTGATTAACTAATTAATTAAA
*
8267098 TTGATTAACTAGTTAATTA
1 TTGATTAACTAATTAATTA
8267117 TATATATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (21 bp):
TTGATTAACTAATTAATTAAA
Found at i:8271041 original size:34 final size:34
Alignment explanation
Indices: 8271003--8271080 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
8270993 GCATGAATTG
* * *
8271003 TGCTACTG-AGTTGATCTATTTTAAGCATATTATT
1 TGCTACTGTA-TTGAACTATTATAAGCATATTAAT
*
8271037 TGCTACTGTATTGAACTGTTATAAGCATATTAAT
1 TGCTACTGTATTGAACTATTATAAGCATATTAAT
8271071 TGCTACTGTA
1 TGCTACTGTA
8271081 CTGTCCTGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (34 bp):
TGCTACTGTATTGAACTATTATAAGCATATTAAT
Found at i:8271354 original size:45 final size:45
Alignment explanation
Indices: 8271296--8271395 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
8271286 ATAAATATAT
* * ** * *
8271296 TGTACATCTATAGCCTAGTGGTAGATTTTATCTGTGATATTTTGC
1 TGTACACCCATAGCCTAGTGACAGATTTTATCTGCGATACTTTGC
8271341 TGTACACCCATAGCCTAGTGACAGATTTTATCTGCGATACTTTGC
1 TGTACACCCATAGCCTAGTGACAGATTTTATCTGCGATACTTTGC
* *
8271386 AGTGCACCCA
1 TGTACACCCA
8271396 CATCCCGATG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (45 bp):
TGTACACCCATAGCCTAGTGACAGATTTTATCTGCGATACTTTGC
Found at i:8278353 original size:62 final size:62
Alignment explanation
Indices: 8278275--8278434 Score: 221
Period size: 62 Copynumber: 2.6 Consensus size: 62
8278265 GTAATGTCAC
* * * *
8278275 ATTTGCTACTTGTACTTTTATAAAATGTTCAATGTGATACCTAAACTATTAATTTGTATATT
1 ATTTGGTACTTGTACTTTCATAAAATGTCCAATGTGATACCTAAACTATCAATTTGTATATT
* * * *
8278337 ATTTGGTATTTGTACTTTCATAAAATGTCCAATGTGGTACCTGAACTATCAATTTGTGTATT
1 ATTTGGTACTTGTACTTTCATAAAATGTCCAATGTGATACCTAAACTATCAATTTGTATATT
* * *
8278399 ATTTAGTACTTGTACTTTCATAAATTGTCTAATGTG
1 ATTTGGTACTTGTACTTTCATAAAATGTCCAATGTG
8278435 GTACTTATAC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (62 bp):
ATTTGGTACTTGTACTTTCATAAAATGTCCAATGTGATACCTAAACTATCAATTTGTATATT
Found at i:8279046 original size:29 final size:29
Alignment explanation
Indices: 8278970--8279064 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
8278960 GATAGTTCGG
*
8278970 GTACCACATTAAACATTTTCAAAGTATAA
1 GTACCACATTAAACATTTTCAAAGTAGAA
** **
8278999 GTACCACATTGGATGTTTTCAAAGTAGAA
1 GTACCACATTAAACATTTTCAAAGTAGAA
* * *
8279028 GTACTACATTAAACATTTTATAAAAGTACAA
1 GTACCACATTAAACA-TTT-TCAAAGTAGAA
8279059 GTACCA
1 GTACCA
8279065 AATAATACAC
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
29 34 0.67
30 3 0.06
31 14 0.27
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (29 bp):
GTACCACATTAAACATTTTCAAAGTAGAA
Found at i:8298378 original size:29 final size:29
Alignment explanation
Indices: 8298345--8298402 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
8298335 AATTTAAATA
* *
8298345 AAAAAT-ATAAAAAGATTATTAAAAATTAT
1 AAAAATCACAAAAAAATTA-TAAAAATTAT
*
8298374 AAAAATCGCAAAAAAATTATAAAAATTAT
1 AAAAATCACAAAAAAATTATAAAAATTAT
8298403 CGTACTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (29 bp):
AAAAATCACAAAAAAATTATAAAAATTAT
Found at i:8298379 original size:9 final size:9
Alignment explanation
Indices: 8298315--8298402 Score: 52
Period size: 9 Copynumber: 9.1 Consensus size: 9
8298305 TGATAAAAAG
*
8298315 TAAAATTTA
1 TAAAAATTA
8298324 TAAAAA-TA
1 TAAAAATTA
* *
8298332 TTAAATTTAAA
1 TAAAAATT--A
*
8298343 TAAAAAATA
1 TAAAAATTA
8298352 TAAAAAGATTA
1 T-AAAA-ATTA
8298363 TTAAAAATTA
1 -TAAAAATTA
*
8298373 TAAAAATCGCA
1 TAAAAAT--TA
*
8298384 AAAAAATTA
1 TAAAAATTA
8298393 TAAAAATTA
1 TAAAAATTA
8298402 T
1 T
8298403 CGTACTAAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 6 0.10
9 25 0.42
10 8 0.13
11 20 0.33
12 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:8306115 original size:21 final size:22
Alignment explanation
Indices: 8306073--8306120 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
8306063 TATATTTAAT
8306073 AATA-TTATTTAATATCTAT-A
1 AATATTTATTTAATATCTATAA
*
8306093 AATATTTATTT-ATATCTTCTAA
1 AATATTTATTTAATATC-TATAA
8306115 AATATT
1 AATATT
8306121 AATAAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 9 0.38
21 8 0.33
22 7 0.29
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (22 bp):
AATATTTATTTAATATCTATAA
Found at i:8307800 original size:18 final size:18
Alignment explanation
Indices: 8307779--8307826 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 18
8307769 ATATATTTTT
8307779 TATTTTTAATCAAATATA
1 TATTTTTAATCAAATATA
*
8307797 TATTTTATATATTAAATATA
1 TATTTT-TA-ATCAAATATA
*
8307817 TATATTTAAT
1 TATTTTTAAT
8307827 ATGAGCACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 8 0.31
19 4 0.15
20 14 0.54
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTTTTAATCAAATATA
Found at i:8308031 original size:25 final size:25
Alignment explanation
Indices: 8307986--8308047 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 25
8307976 GGCCCATATT
*
8307986 AAATATATATATTTTTATTTTTAGTC
1 AAATATATAT-TTTTTATTTTTAATC
8308012 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
8308037 AAATATATATT
1 AAATATATATT
8308048 ATATATATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 25 0.71
26 10 0.29
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (25 bp):
AAATATATATTTTTTATTTTTAATC
Found at i:8316542 original size:13 final size:13
Alignment explanation
Indices: 8316524--8316548 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8316514 TTTTTTATTA
8316524 TTTTTAATTAATG
1 TTTTTAATTAATG
8316537 TTTTTAATTAAT
1 TTTTTAATTAAT
8316549 AAATATGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Done.