Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 30 of 185
Found at i:8317578 original size:28 final size:28
Alignment explanation
Indices: 8317534--8317587 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
8317524 ATTATACTAG
8317534 TTTTCTCACTTTGGTACTTAAACTTTTT
1 TTTTCTCACTTTGGTACTTAAACTTTTT
*
8317562 TTTTGCTCA-TTTTGTACTTAAACTTT
1 TTTT-CTCACTTTGGTACTTAAACTTT
8317588 GCACTGTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.19, C:0.17, G:0.07, T:0.57
Consensus pattern (28 bp):
TTTTCTCACTTTGGTACTTAAACTTTTT
Found at i:8317794 original size:20 final size:21
Alignment explanation
Indices: 8317769--8317811 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8317759 TGACCAGTCA
*
8317769 AAAAATCAT-TAAAAATATTT
1 AAAAATCATAAAAAAATATTT
*
8317789 AAAAATTATAAAAAAATATTT
1 AAAAATCATAAAAAAATATTT
8317810 AA
1 AA
8317812 TATTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATCATAAAAAAATATTT
Found at i:8317822 original size:21 final size:21
Alignment explanation
Indices: 8317779--8317845 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
8317769 AAAAATCATT
* * *
8317779 AAAAATATTTAAAAATTATAA
1 AAAAATATTTAATATTTAAAA
8317800 AAAAATATTTAATATTTAAAA
1 AAAAATATTTAATATTTAAAA
* *
8317821 AATATAATTTTTTAATATTTTAAA
1 AA-A-AA-TATTTAATATTTAAAA
8317845 A
1 A
8317846 TTATTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
21 20 0.53
22 1 0.03
23 2 0.05
24 15 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAAATATTTAATATTTAAAA
Found at i:8319957 original size:22 final size:21
Alignment explanation
Indices: 8319907--8319958 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
8319897 TTTCCCTTGC
*
8319907 CCACACGGGTGTATGCCTCAT
1 CCACATGGGTGTATGCCTCAT
* *
8319928 CCACATGGGTGTCTGCCTCCT
1 CCACATGGGTGTATGCCTCAT
8319949 CTCACATGGG
1 C-CACATGGG
8319959 CATTTTGACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
CCACATGGGTGTATGCCTCAT
Found at i:8322851 original size:43 final size:42
Alignment explanation
Indices: 8322801--8323109 Score: 248
Period size: 43 Copynumber: 7.3 Consensus size: 42
8322791 GGGTTACCGA
* * * *
8322801 TATGTGATAACATGTAAGACCATGTCTAGAACATTGGCATCG
1 TATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
* * *
8322843 TACTGTGATTACGTATAAGACCATGTCT-GGACATTTGCATCAT
1 TA-TGTGATTACATATAAGACCATGTCTGGGACATTGGCATC-G
* *** * *
8322886 TATATGATTTTGTATAATATCC-TGTCTGGGACAGTGGCATCG
1 TATGTGATTACATATAAGA-CCATGTCTGGGACATTGGCATCG
* * * *
8322928 ATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTG
1 -TATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
* * *
8322971 TATTGTGATTACGTATAAGACCATGTTTGGGACATTGACAT--
1 TA-TGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
* * * ** *
8323012 TATTATGATTTCATATAAGACCCTGTCTGGGACAGCGGTATCG
1 TA-TGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
* * * *
8323055 ATATGTGATAACATGTAAGACCATGTCTGGGACATTGACATTG
1 -TATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
8323098 TACTGTGATTAC
1 TA-TGTGATTAC
8323110 GTATGTCGAA
Statistics
Matches: 207, Mismatches: 49, Indels: 21
0.75 0.18 0.08
Matches are distributed among these distances:
41 32 0.15
42 37 0.18
43 136 0.66
44 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (42 bp):
TATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG
Found at i:8323088 original size:127 final size:128
Alignment explanation
Indices: 8322798--8323113 Score: 485
Period size: 127 Copynumber: 2.5 Consensus size: 128
8322788 TTAGGGTTAC
* *
8322798 CGATATGTGATAACATGTAAGACCATGTCTAGAACATTGGCATCGTACTGTGATTACGTATAAGA
1 CGATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTGTACTGTGATTACGTATAAGA
** * * *
8322863 CCATGTCTGGACATTTGCATCATTATATGATTTTGTATAATATCCTGTCTGGGACAGTGGCAT
66 CCATGTCTGGACATTTGCATCATTATATGATTTCATATAAGACCCTGTCTGGGACAGCGGCAT
*
8322926 CGATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGTGATTACGTATAAGA
1 CGATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTGTACTGTGATTACGTATAAGA
* *
8322991 CCATGTTTGGGACA-TTG-A-CATTATTATGATTTCATATAAGACCCTGTCTGGGACAGCGGTAT
66 CCATGTCT-GGACATTTGCATCATTA-TATGATTTCATATAAGACCCTGTCTGGGACAGCGGCAT
* *
8323053 CGATATGTGATAACATGTAAGACCATGTCTGGGACATTGACATTGTACTGTGATTACGTAT
1 CGATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTGTACTGTGATTACGTAT
8323114 GTCGAAACCA
Statistics
Matches: 173, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
126 5 0.03
127 91 0.53
128 72 0.42
129 5 0.03
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (128 bp):
CGATATGTGATAACATGTAAGACCATGTCTAGGACATTGGCATTGTACTGTGATTACGTATAAGA
CCATGTCTGGACATTTGCATCATTATATGATTTCATATAAGACCCTGTCTGGGACAGCGGCAT
Found at i:8323683 original size:98 final size:98
Alignment explanation
Indices: 8323514--8323707 Score: 298
Period size: 98 Copynumber: 2.0 Consensus size: 98
8323504 CAATAAAACA
* * * *
8323514 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTCAAGAAATCACACCCAATACGTTAGCGCACAACTCCT
* * * *
8323579 CTAAAATTCCAAACTCGGAATATTTCCTTTACT
66 CCAAAATCCCAAACTCAGAATATTTCATTTACT
* *
8323612 TTAAAAGAACATCCACTTATCCAAGATTCAAGATATCACACCCAATACGTTAGCGCATAACTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTCAAGAAATCACACCCAATACGTTAGCGCACAACTCCT
8323677 CCAAAATCCCAAACTCAGAATATTTCATTTA
66 CCAAAATCCCAAACTCAGAATATTTCATTTA
8323708 TTATTTTTAG
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.27
Consensus pattern (98 bp):
TTAAAAGAACATCCACTTATCCAAGATTCAAGAAATCACACCCAATACGTTAGCGCACAACTCCT
CCAAAATCCCAAACTCAGAATATTTCATTTACT
Found at i:8325434 original size:14 final size:14
Alignment explanation
Indices: 8325415--8325441 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8325405 TCTGTAAATG
8325415 ATTTGGGCCACTGA
1 ATTTGGGCCACTGA
8325429 ATTTGGGCCACTG
1 ATTTGGGCCACTG
8325442 TTTTAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (14 bp):
ATTTGGGCCACTGA
Found at i:8325736 original size:44 final size:43
Alignment explanation
Indices: 8325679--8326273 Score: 315
Period size: 44 Copynumber: 13.8 Consensus size: 43
8325669 CTAGTGCTTC
* * *
8325679 AATCTACTTCACTGCAACTTCAGGGAGATAAGATTTTCTTCCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTT-CTT
* * * * * *
8325723 AGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTAGATAC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTCTT
* * * * * * * *
8325764 GATCTGGT-CTCTGTAACTTTAGAGAGATAAGATCTGAGATT-TT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TGCTTCTT
* * * **
8325807 AATCAGCTCCACTGCAACTTTAGGGAGAT-AGAATTGTCGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CTTC-TT
* *
8325851 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CTTCTT
* * * *
8325895 CAGTCTGC-CTCACTGCCACTTCA-AGAGGATAAGACTTGCTTACTT
1 -AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCTT-CTT
* * * * * *
8325940 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATGC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTCTT
* * ** * *
8325981 GATCTGCT-CTCTGCAACTTCAGAAAGATAAGATCTGAGATT-TT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TGCTTCTT
** * * * * * *
8326024 AATCAACTGCACTGCCACTTCAGGGAGATAAGACTAGATAC--
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTCTT
* * * *
8326065 AATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGATT-TT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TGCTTCTT
* * * * **
8326108 AATCCGCTCCACTGCAACTTCAGGGTGATAGGATTTTCGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTC-TT
* *
8326152 AATCTGCTCCACTGCAACTTCAGGGTGATAAGATTTGTTATCTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-TCTT
* *
8326196 CAATCTGC-CTCACTGCAACTTTA-GGAGGATAAGACTTGCTTACTT
1 -AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCTT-CTT
* *
8326241 AGTCCGCTCCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
8326274 CTAGATGCGA
Statistics
Matches: 420, Mismatches: 96, Indels: 70
0.72 0.16 0.12
Matches are distributed among these distances:
40 60 0.14
41 21 0.05
42 17 0.04
43 24 0.06
44 219 0.52
45 79 0.19
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTCTT
Found at i:8325999 original size:40 final size:41
Alignment explanation
Indices: 8325725--8326346 Score: 215
Period size: 44 Copynumber: 14.5 Consensus size: 41
8325715 TCTTCCTTAG
*
8325725 TCTGCTCCACTGCAACTTCAG-GAAGATAAGACTAGATACGA
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGACTAGATACAA
* * * * **
8325766 TCTGGT-CTCTGTAACTTTAGAGAGATAAGATCTGAGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGA-TACAA
* * * * * *
8325809 TCAGCTCCACTGCAACTTTAGGGAGAT-AGAATTG-TCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGAT--AC---AA
* * * * * *
8325853 TCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAG--A--TACAA
* * * *
8325898 TCTGC-CTCACTGCCACTTCA-AGAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGAGA-GATAAGACTAG-ATAC--AA
* * * *
8325942 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATACAA
* * **
8325983 TCTGCT-CTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGA-TACAA
** * * *
8326026 TCAACTGCACTGCCACTTCAGGGAGATAAGACTAGATACAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATACAA
* **
8326067 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGA-TACAA
* * * * * * * **
8326110 TCCGCTCCACTGCAACTTCAGGGTGATAGGATTTTCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA--CT-AGATACAA
* * * * *
8326154 TCTGCTCCACTGCAACTTCAGGGTGATAAGATTTGTTATCTTCAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAG--A--TACAA
* * * *
8326199 TCTGC-CTCACTGCAACTTTAG-GAGGATAAGACTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGAGA-GATAAGACTAG-ATAC--AA
* * * *
8326243 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATACAA
* **
8326284 TCTGCT-C-TTGCAACTTCAGAGAGATAAGATCTGAGATTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGA-TACAA
* *
8326326 TCCGCCCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
8326347 GAAGATAGGA
Statistics
Matches: 440, Mismatches: 95, Indels: 89
0.71 0.15 0.14
Matches are distributed among these distances:
39 21 0.05
40 63 0.14
41 35 0.08
42 25 0.06
43 30 0.07
44 190 0.43
45 74 0.17
48 1 0.00
50 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (41 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATACAA
Found at i:8326049 original size:84 final size:84
Alignment explanation
Indices: 8325946--8326137 Score: 303
Period size: 84 Copynumber: 2.3 Consensus size: 84
8325936 ACTTAGTCTG
* * *
8325946 CTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAA
8326011 GATCTGAGATTTTAATCAA
66 GATCTGAGATTTTAATCAA
* * *
8326030 CTGCACTGCCACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAA
**
8326095 GATCTGAGATTTTAATCCG
66 GATCTGAGATTTTAATCAA
*
8326114 CTCCACTGCAACTTCAGGGTGATA
1 CTCCACTGCAACTTCAGGGAGATA
8326138 GGATTTTCGG
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 97 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (84 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAAAGATAA
GATCTGAGATTTTAATCAA
Found at i:8326232 original size:301 final size:300
Alignment explanation
Indices: 8325732--8326353 Score: 1001
Period size: 301 Copynumber: 2.1 Consensus size: 300
8325722 TAGTCTGCTC
* * * *
8325732 CACTGCAACTTCAGGAAGATAAGACTAGATACGATCTGGTCTCTGTAACTTTAGAGAGATAAGAT
1 CACTGCAACTTCAGGAAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
*
8325797 CTGAGATTTTAATCAGCTCCACTGCAACTTTAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCA
66 CTGAGATTTTAATCAGCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCA
* *
8325862 CTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCCACTTCAAGAGGATAA
131 CTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTGCAACTTCAAGAGGATAA
* *
8325927 GACTTGCTTACTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTC
196 GACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT-
8325992 TGCAACTTCAGAAAGATAAGATCTGAGATTTTAATCAACTG
260 TGCAACTTCAGAAAGATAAGATCTGAGATTTTAATCAACTG
* *
8326033 CACTGCCACTTCAGGGAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAGGAAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
* * * *
8326098 CTGAGATTTTAATCCGCTCCACTGCAACTTCAGGGTGATAGGATTTTCGGCTTTAATCTGCTCCA
66 CTGAGATTTTAATCAGCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCA
* * ** * *
8326163 CTGCAACTTCAGGGTGATAAGATTTGTTATCTTCAATCTGCCTCACTGCAACTTTAGGAGGATAA
131 CTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTGCAACTTCAAGAGGATAA
8326228 GACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTT
196 GACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTT
* ** **
8326293 GCAACTTCAGAGAGATAAGATCTGAGATTTTAATCCGCCC
261 GCAACTTCAGAAAGATAAGATCTGAGATTTTAATCAACTG
8326333 CACTGCAACTTCAGGAAGATA
1 CACTGCAACTTCAGGAAGATA
8326354 GGATCCCGAC
Statistics
Matches: 293, Mismatches: 28, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
300 55 0.19
301 238 0.81
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (300 bp):
CACTGCAACTTCAGGAAGATAAGACTAGATACAATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
CTGAGATTTTAATCAGCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCA
CTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTGCAACTTCAAGAGGATAA
GACTTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTT
GCAACTTCAGAAAGATAAGATCTGAGATTTTAATCAACTG
Found at i:8337801 original size:98 final size:98
Alignment explanation
Indices: 8337629--8337825 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
8337619 GTGCAATAAA
* * *
8337629 ACTTTAAAAGAACATCCACTTATCCAAGTTTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATG
*
8337694 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCCAAAATCCCAAACTCGGAATATTTCCTTT
8337727 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATG
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATG
8337792 CCTCCAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCCAAAATCCCAAACTCGGAATATTTCCTTT
8337825 A
1 A
8337826 TTATTTTTTG
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATG
CCTCCAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:8341803 original size:41 final size:41
Alignment explanation
Indices: 8341746--8341943 Score: 199
Period size: 41 Copynumber: 4.8 Consensus size: 41
8341736 GAATATAATA
* * *
8341746 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-CT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
*
8341787 CAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
8341828 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
8341869 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
8341910 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
8341944 ATCTGTTTAA
Statistics
Matches: 137, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.02
40 8 0.06
41 124 0.91
42 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:8355350 original size:41 final size:39
Alignment explanation
Indices: 8355287--8355490 Score: 196
Period size: 41 Copynumber: 5.0 Consensus size: 39
8355277 GTGATTGAAT
* * *
8355287 ATAATACAGACGTTACGTCTAGCAGGCTTAATGCCGGTG
1 ATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
*
8355326 AAGTAATTCAGACTTTAAGTCTAGCAGGCTAAATGCCGGTG
1 -A-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
8355367 ATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTG
1 ATA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
8355408 ATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 ATA-A-TTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
* * **
8355449 TACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTG
1 -A-T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
8355490 A
1 A
8355491 ATCTGTTTAA
Statistics
Matches: 144, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 7 0.05
41 129 0.90
42 3 0.02
43 2 0.01
44 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (39 bp):
ATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
Found at i:8355473 original size:82 final size:81
Alignment explanation
Indices: 8355305--8355490 Score: 216
Period size: 82 Copynumber: 2.3 Consensus size: 81
8355295 GACGTTACGT
*
8355305 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTAAATGCCGGTGATA
1 CTAGCAGGCTTAATGCCGGTG-AGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGATA
* * *
8355370 CATTTCAGACTATATGT
65 CATATCAGACTATAAGC
* *
8355387 CTAGCAGGCTTAATGCCGGTGA-TACATTTCAGACTATATGTCTAGCAGGCTAAGTGCCGGTG-T
1 CTAGCAGGCTTAATGCCGGTGAGTA-A-TTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGAT
* *
8355450 AC-TGAATCAGGCTTTAAGC
64 ACAT--ATCAGACTATAAGC
**
8355469 CTAGCAGGCAAAATGCCGGTGA
1 CTAGCAGGCTTAATGCCGGTGA
8355491 ATCTGTTTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
80 3 0.03
81 5 0.06
82 82 0.91
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (81 bp):
CTAGCAGGCTTAATGCCGGTGAGTAATTCAGACTATAAGTCTAGCAGGCTAAATGCCGGTGATAC
ATATCAGACTATAAGC
Found at i:8369786 original size:20 final size:20
Alignment explanation
Indices: 8369758--8369799 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8369748 AAATAAACAC
* *
8369758 ATAATTATTCATTTAATATT
1 ATAACTATTCAATTAATATT
8369778 ATAACTATTCAATTAATATT
1 ATAACTATTCAATTAATATT
8369798 AT
1 AT
8369800 TAAATAGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAACTATTCAATTAATATT
Found at i:8374881 original size:20 final size:20
Alignment explanation
Indices: 8374853--8374894 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8374843 AAATAAACAC
* *
8374853 ATAATTATTCATTTAATATT
1 ATAACTATTCAATTAATATT
8374873 ATAACTATTCAATTAATATT
1 ATAACTATTCAATTAATATT
8374893 AT
1 AT
8374895 TAAATAGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAACTATTCAATTAATATT
Found at i:8375240 original size:3 final size:3
Alignment explanation
Indices: 8375232--8375257 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8375222 ATATATATAT
8375232 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
8375258 CACTAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:8382617 original size:103 final size:103
Alignment explanation
Indices: 8382438--8382645 Score: 382
Period size: 103 Copynumber: 2.0 Consensus size: 103
8382428 ATAAGCAAGG
8382438 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
1 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
* *
8382503 TTTTCAAGATACTTCTTTTTATTTATATACTTTTTTTT
66 TTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
8382541 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCAC-ATAAC
1 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGA-AAC
8382605 ATTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
65 ATTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
8382644 AT
1 AT
8382646 GAGAAAAGAT
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 1 0.01
103 101 0.99
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (103 bp):
ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
TTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
Found at i:8390689 original size:24 final size:23
Alignment explanation
Indices: 8390645--8390689 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8390635 TGCTGCCAAG
*
8390645 ACTGACTTTGAAAACACAAAAAA
1 ACTGACTTTGAAAAAACAAAAAA
*
8390668 ACTGACTTTGAAAAAACTAAAA
1 ACTGACTTTGAAAAAACAAAAA
8390690 CATAAACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.16, G:0.09, T:0.20
Consensus pattern (23 bp):
ACTGACTTTGAAAAAACAAAAAA
Found at i:8392654 original size:29 final size:29
Alignment explanation
Indices: 8392611--8392674 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
8392601 AAATAATTTG
** *
8392611 ATCTTTATCCGGCCAA-TTTCAAATCTTTA
1 ATCTTTATCAAGCCAACTTT-AAATCTTCA
8392640 ATCTTTATCAAGCCAACTTTAAATCTTCA
1 ATCTTTATCAAGCCAACTTTAAATCTTCA
8392669 ATCTTT
1 ATCTTT
8392675 CAATCTACCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 28 0.90
30 3 0.10
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (29 bp):
ATCTTTATCAAGCCAACTTTAAATCTTCA
Found at i:8394083 original size:14 final size:16
Alignment explanation
Indices: 8394043--8394086 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
8394033 TTTTCAACAT
*
8394043 AAATTAAACTGAATTCA
1 AAATTAAA-TAAATTCA
8394060 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
8394075 AAA-TAAATAAAT
1 AAATTAAATAAAT
8394087 ATGGGTTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:8397490 original size:21 final size:21
Alignment explanation
Indices: 8397451--8397494 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8397441 TTTACTTAGG
*
8397451 ATGTGAATTGTATGGAATTGA
1 ATGTGAATTGTATGAAATTGA
* *
8397472 ATGTGAATTGTGTTAAATTGA
1 ATGTGAATTGTATGAAATTGA
8397493 AT
1 AT
8397495 TAAATTTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (21 bp):
ATGTGAATTGTATGAAATTGA
Found at i:8398005 original size:25 final size:24
Alignment explanation
Indices: 8397971--8398023 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
8397961 ACATACCGCA
8397971 GCTCTTTATGAGCATT-CTGATATAG
1 GCTCTTTATGAGC-TTCCTGATAT-G
8397996 GCTCTTTATGAGCTTCCTGATATG
1 GCTCTTTATGAGCTTCCTGATATG
8398020 GCTC
1 GCTC
8398024 GCTTGAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGATATG
Found at i:8400522 original size:29 final size:30
Alignment explanation
Indices: 8400489--8400553 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
8400479 AAATAATTTG
* *
8400489 ATCTTTATCCAGCC-AATTTCAAATCTTTA
1 ATCTTTATCCAGCCAAACTTCAAATCTTCA
8400518 ATCTTTATCCAGCCAAACTTCAAATCTTCA
1 ATCTTTATCCAGCCAAACTTCAAATCTTCA
8400548 ATCTTT
1 ATCTTT
8400554 CAATCTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (30 bp):
ATCTTTATCCAGCCAAACTTCAAATCTTCA
Found at i:8401118 original size:114 final size:114
Alignment explanation
Indices: 8400950--8401201 Score: 370
Period size: 114 Copynumber: 2.2 Consensus size: 114
8400940 AAAATAAGCA
*
8400950 TTAGCGGCGTTTTT-AAGAAAGCGCCACAAAAAACCTAAGCCCAACGACGTCGTTTCT-TGAGCT
1 TTAGCGGCGTTTTTGAAGAAAGCGCCACAAAAAACCTAAGCCCAACGACGCCGTTT-TATGAGCT
** *
8401013 TTCGGGGATTTAACGGCGTTTCTAAGAAAGCGCCGCTAATGCTCCGGGCT
65 TTCGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
*
8401063 TTAGCGGTGTTTTTGCAA-AAA-CGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGC
1 TTAGCGGCGTTTTTG-AAGAAAGCGCCAC-AAAAAACCTAAGCCCAACGACGCCGTTTTATGAGC
* *
8401126 TTTCGGGGATTTAGCGGCGTTTAAAAGGAAGCGCCGCTAATGCTCAGGGCT
64 TTTCGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
*
8401177 TTAGCGGCGTTTTTG-GGAAAGCGCC
1 TTAGCGGCGTTTTTGAAGAAAGCGCC
8401202 GCTAATGCTC
Statistics
Matches: 124, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
113 23 0.19
114 99 0.80
115 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAAGAAAGCGCCACAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTT
TCGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:8401199 original size:41 final size:41
Alignment explanation
Indices: 8401154--8401244 Score: 173
Period size: 41 Copynumber: 2.2 Consensus size: 41
8401144 GTTTAAAAGG
*
8401154 AAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGA
1 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
8401195 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
1 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
8401236 AAGCGCCGC
1 AAGCGCCGC
8401245 AAAAAAACCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (41 bp):
AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
Found at i:8401231 original size:155 final size:154
Alignment explanation
Indices: 8401038--8401357 Score: 505
Period size: 155 Copynumber: 2.1 Consensus size: 154
8401028 GCGTTTCTAA
* * *
8401038 GAAAGCGCCGCTAATGCTCCGGGCTTTAGCGGTGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
1 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
* *
8401103 CCCAACGACGCCGTTTTATGAGCTTTCGGGGATTTAGCGGCGTTTAAAAGGAAGCGCCGCTAATG
66 CCCAACGACGCCGTTTTATGAGCTTT-AGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATG
8401168 CTCAGGGCTTTAGCGGCGTTTTTGG
130 CTCAGGGCTTTAGCGGCGTTTTTGG
** * *
8401193 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAG
1 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
* * **
8401258 CCCCACGACGCCGTTTTCTGAGCTTTAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
66 CCCAACGACGCCGTTTTATGAGCTTTAGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATGC
8401323 TCAGGGCTTTAGCGGCGTTTTTGG
131 TCAGGGCTTTAGCGGCGTTTTTGG
*
8401347 AAAAGCGCCGC
1 GAAAGCGCCGC
8401358 AAAAAAACCT
Statistics
Matches: 151, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
154 69 0.46
155 82 0.54
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (154 bp):
GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
CCCAACGACGCCGTTTTATGAGCTTTAGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATGC
TCAGGGCTTTAGCGGCGTTTTTGG
Found at i:8401957 original size:7 final size:7
Alignment explanation
Indices: 8401945--8402000 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
8401935 GAGTATAGGT
*
8401945 TTAGGGA
1 TTAGGGG
8401952 TTAGGGG
1 TTAGGGG
8401959 TTAGGGG
1 TTAGGGG
**
8401966 TTAGGTT
1 TTAGGGG
* *
8401973 TTAAGGT
1 TTAGGGG
8401980 TTAGGGG
1 TTAGGGG
8401987 TTAGAGGG
1 TTAG-GGG
8401995 TTAGGG
1 TTAGGG
8402001 TTTTGGGATT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
7 34 0.83
8 7 0.17
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (7 bp):
TTAGGGG
Found at i:8401960 original size:15 final size:14
Alignment explanation
Indices: 8401927--8402011 Score: 64
Period size: 14 Copynumber: 5.9 Consensus size: 14
8401917 TATATTTTAA
8401927 GGTTTAGGGAGTATA-
1 GGTTTAGGGA-T-TAG
8401942 GGTTTAGGGATTAG
1 GGTTTAGGGATTAG
* *
8401956 GGGTTAGGGGTTAG
1 GGTTTAGGGATTAG
* * *
8401970 GTTTTAAGGTTTAG
1 GGTTTAGGGATTAG
* *
8401984 GGGTTAGAGGGTTAG
1 GGTTTAG-GGATTAG
*
8401999 GGTTTTGGGATTA
1 GGTTTAGGGATTA
8402012 AAAGTTAGGG
Statistics
Matches: 55, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
13 2 0.04
14 32 0.58
15 21 0.38
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (14 bp):
GGTTTAGGGATTAG
Found at i:8402019 original size:21 final size:20
Alignment explanation
Indices: 8401994--8402047 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
8401984 GGGTTAGAGG
*
8401994 GTTAGGGTTTTGGGATTAAAA
1 GTTAGGGTTTTGGGAGT-AAA
* * **
8402015 GTTAGGGATTTAGGAGTCGA
1 GTTAGGGTTTTGGGAGTAAA
8402035 GTTAGGGTTTTGG
1 GTTAGGGTTTTGG
8402048 ATTTAGATTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.22, C:0.02, G:0.39, T:0.37
Consensus pattern (20 bp):
GTTAGGGTTTTGGGAGTAAA
Found at i:8402019 original size:50 final size:50
Alignment explanation
Indices: 8401921--8402020 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 50
8401911 GGAGTTTATA
* * * ***
8401921 TTTTAAGGTTTAGGGAGTATAGGTTTAGGGATTAGGGGTTAGGGGTTAGG
1 TTTTAAGGTTTAGGGAGTAGAGGGTTAGGGATTAGGGATTAAAAGTTAGG
* *
8401971 TTTTAAGGTTTAGGG-GTTAGAGGGTTAGGGTTTTGGGATTAAAAGTTAGG
1 TTTTAAGGTTTAGGGAG-TAGAGGGTTAGGGATTAGGGATTAAAAGTTAGG
8402021 GATTTAGGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.02
50 40 0.98
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (50 bp):
TTTTAAGGTTTAGGGAGTAGAGGGTTAGGGATTAGGGATTAAAAGTTAGG
Found at i:8402136 original size:267 final size:267
Alignment explanation
Indices: 8401559--8402244 Score: 1126
Period size: 267 Copynumber: 2.6 Consensus size: 267
8401549 ATTATTTAAA
* * *
8401559 ATAATTGTAAATGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
* * *
8401624 AAGATTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGTTTAAGGAGTATGGGTTTAGGGATTATG
66 AAGATTTAAAGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTAT-GGTTTAGGGATTAGG
8401689 GATTAGGGGTTAGGATTTAAGGTTTAAGGGTTAGAGGGTTAGGGGTTTAGGGATTAAAAGTTAGG
130 GATTAGGGGTTAGGATTTAAGGTTTAAGGGTTAGAGGGTTAGGGGTTTAGGGATTAAAAGTTAGG
* *
8401754 GATTCAGGGGTCGAGTTAAGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
195 GATTCAGGAGTCGAGTTAAGGTTTTGGATTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
8401819 GTTCTTAT
260 GTTCTTAT
8401827 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
*
8401892 AAGATTTAAAGCCGGTTTAGGAGTTTATATTTTAAGGTTTAGGGAGTATAGGTTTAGGGATTAGG
66 AAGATTTAAAGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTAT-GGTTTAGGGATTAGG
* * * *
8401957 GGTTAGGGGTTAGGTTTTAAGGTTTAGGGGTTAGAGGGTTA-GGGTTTTGGGATTAAAAGTTAGG
130 GATTAGGGGTTAGGATTTAAGGTTTAAGGGTTAGAGGGTTAGGGGTTTAGGGATTAAAAGTTAGG
* *
8402021 GATTTAGGAGTCGAGTTAGGGTTTTGGATTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
195 GATTCAGGAGTCGAGTTAAGGTTTTGGATTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
8402086 GTTCTTAT
260 GTTCTTAT
*
8402094 ATAATTGTAAAAGAGATAATAATAATTTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
* * *
8402159 TAGATTTAAAGCCGATTTAGGAGTTCATA-TTTAAGGTTTAGGGAGTATGGATTTAGGGATTATG
66 AAGATTTAAAGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGG-TTTAGGGATTAGG
* *
8402223 AATTAGGGATTATGG-TTTAAGG
130 GATTAGGGGTTA-GGATTTAAGG
8402245 GTTGGGATTT
Statistics
Matches: 392, Mismatches: 24, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
265 2 0.01
266 47 0.12
267 183 0.47
268 160 0.41
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (267 bp):
ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
AAGATTTAAAGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGTTTAGGGATTAGGG
ATTAGGGGTTAGGATTTAAGGTTTAAGGGTTAGAGGGTTAGGGGTTTAGGGATTAAAAGTTAGGG
ATTCAGGAGTCGAGTTAAGGTTTTGGATTTAGATTAATTATTTTTTAATTTATATTTTAAATATG
TTCTTAT
Found at i:8402215 original size:15 final size:15
Alignment explanation
Indices: 8402195--8402241 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
8402185 ATATTTAAGG
*
8402195 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
8402210 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
8402224 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
8402238 TTTA
1 TTTA
8402242 AGGGTTGGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:8402274 original size:15 final size:15
Alignment explanation
Indices: 8402256--8402323 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
8402246 TTGGGATTTA
*
8402256 AGGTTTTGGGGTTAG
1 AGGTTTAGGGGTTAG
8402271 AGGTTTAGGGGTTAG
1 AGGTTTAGGGGTTAG
*
8402286 ATG-TTAGGGGTTA-
1 AGGTTTAGGGGTTAG
*
8402299 AGAG-TTAGGGATTTA-
1 AG-GTTTAGGG-GTTAG
8402314 AGGTTTAGGG
1 AGGTTTAGGG
8402324 ATTCAGGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
13 1 0.02
14 18 0.39
15 27 0.59
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (15 bp):
AGGTTTAGGGGTTAG
Found at i:8402326 original size:15 final size:14
Alignment explanation
Indices: 8402236--8402323 Score: 56
Period size: 14 Copynumber: 6.1 Consensus size: 14
8402226 TAGGGATTAT
*
8402236 GGTTTAAGGGTT-G
1 GGTTTAAGGTTTAG
*
8402249 GGATTTAAGGTTTTG
1 GG-TTTAAGGTTTAG
*
8402264 GGGTTAGAGGTTTAG
1 GGTTTA-AGGTTTAG
* *
8402279 GGGTT-AGATGTTAG
1 GGTTTAAGGT-TTAG
*
8402293 GGGTTAAGAG-TTAG
1 GGTTTAAG-GTTTAG
8402307 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
8402322 GG
1 GG
8402324 ATTCAGGGGT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
13 5 0.08
14 28 0.46
15 28 0.46
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Found at i:8402881 original size:147 final size:147
Alignment explanation
Indices: 8402698--8403138 Score: 771
Period size: 147 Copynumber: 3.0 Consensus size: 147
8402688 TTCAAAATGA
*
8402698 AATAGCAGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAT
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAT
* * *
8402763 TTTAGAACAGCAAAACGACGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCATTTTATAAGAAG
66 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAAG
8402828 CGCCGCTAAAGGTAAGC
131 CGCCGCTAAAGGTAAGC
*
8402845 AATAGCGGCGTTTTCTATAAAAACACCGCAAAGAATAAATCAATTTA-TAAAAAAATAAAAAAAA
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAAT-AAAAAAA
8402909 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
65 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
8402974 GCGCCGCTAAAGGTAAGC
130 GCGCCGCTAAAGGTAAGC
*
8402992 AATAGCGGCGTTTTC--TAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAT
* *
8403055 ATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAG
66 TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAAG
*
8403120 TGCCGCTAAAGGTAAGC
131 CGCCGCTAAAGGTAAGC
8403137 AA
1 AA
8403139 ACGCCGCAAA
Statistics
Matches: 282, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
145 117 0.41
146 18 0.06
147 147 0.52
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (147 bp):
AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAT
TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAAG
CGCCGCTAAAGGTAAGC
Found at i:8403234 original size:125 final size:127
Alignment explanation
Indices: 8403010--8403404 Score: 458
Period size: 125 Copynumber: 3.0 Consensus size: 127
8403000 CGTTTTCTAA
8403010 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAAATTAGAATAGCAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAAATTAGAATAGCAAAACGGCG
* * *
8403075 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGTGCCGCTAAAGGTAAGC
66 TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGC
*
8403137 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAAT-AAAAAAAA-TAGAATAGCAAAGCGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAAATTAGAATAGCAAAACGGCG
8403200 TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGC
66 TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGC
* ** *** * *
8403262 AATAGCGGCGTTTTCCAAA-AA-AACGCCGAAAAGAATAAATCAATTTATTAAAAAAAAATTTTA
1 AA-A-CGCCG-----CAAAGAATAA-ATC-AATTTATTAAA--AA---AATAAAAAAAAA--TTA
* * * *
8403325 GAATAGCAAAACGGCATCGTTTTGTTCAAAAT-AAAAAAATTTTGTGGCGTTTTATAAGAAGCGC
50 GAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAAA-TTTGCGGCGTTTTATAAAAAGCGC
8403389 CGCTAAAGGTAAGC
114 CGCTAAAGGTAAGC
8403403 AA
1 AA
8403405 TAGCGGCATT
Statistics
Matches: 232, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
125 78 0.34
126 9 0.04
127 41 0.18
130 2 0.01
131 3 0.01
132 11 0.05
134 2 0.01
137 2 0.01
138 8 0.03
140 7 0.03
141 69 0.30
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (127 bp):
AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAAATTAGAATAGCAAAACGGCG
TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGC
Found at i:8403672 original size:147 final size:148
Alignment explanation
Indices: 8403137--8403671 Score: 761
Period size: 147 Copynumber: 3.7 Consensus size: 148
8403127 AAAGGTAAGC
* *
8403137 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAA--ATAGAATAGCAAAGCGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCG
* * * *
8403200 TCATTTTGTTCAAAATGAAAAAAA-TTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGCAA
66 TCGTTTTGTTCAAAATGAAAAAAATTTTGCAGCATTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
8403264 TAGCGGCGTTTTCCAAAA
131 TAGCGGCGTTTTCCAAAA
* *
8403282 AAACGCCGAAAAGAATAAATCAATTTATT-----AA-AAAAAAATTTTAGAATAGCAAAACGGCA
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCG
** *
8403341 TCGTTTTGTTCAAAAT-AAAAAAATTTTGTGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 TCGTTTTGTTCAAAATGAAAAAAATTTTGCAGCATTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
* *
8403405 TAGCGGCATTTTCCAGAA
131 TAGCGGCGTTTTCCAAAA
* *
8403423 AAACGCCGCAAAGAATAAATCAATTTTTTAAAAAAATAAAAAAATTTTAGAATAACAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCG
* * *
8403488 TCGTTTCGTTCAAAATG-AAAAAATTTTGCAGCATTTTTTAAGAAGCGCCGCTAAAAGTAAGCAA
66 TCGTTTTGTTCAAAATGAAAAAAATTTTGCAGCATTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
* *
8403552 TAGCGGCGTTTTCTATAA
131 TAGCGGCGTTTTCCAAAA
* * * *
8403570 AAACGCAGCAAAGAATAAATCAATTTATAAAAAAAATAAAAAAATTTTAGAATAGCAAAATGACG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCG
*
8403635 TCGTTTTGTTCAAAATGAAAAAAATTTT-CAACATTTT
66 TCGTTTTGTTCAAAATGAAAAAAATTTTGCAGCATTTT
8403672 TGCTATAAAT
Statistics
Matches: 349, Mismatches: 30, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
139 7 0.02
140 9 0.03
141 112 0.32
145 28 0.08
146 2 0.01
147 181 0.52
148 10 0.03
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (148 bp):
AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAATTTTAGAATAGCAAAACGGCG
TCGTTTTGTTCAAAATGAAAAAAATTTTGCAGCATTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
TAGCGGCGTTTTCCAAAA
Found at i:8406060 original size:23 final size:23
Alignment explanation
Indices: 8406030--8406309 Score: 143
Period size: 23 Copynumber: 12.3 Consensus size: 23
8406020 GAAATTTGAT
8406030 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
* **
8406053 AGTGCTGCAAGTTGAAGTACTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* * *
8406075 AGTTGCTGGAAACTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * *
8406099 A-TCGCTG-TAATTGAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
8406121 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
*
8406144 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* *
8406166 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * * *
8406190 A-TCGTTG-TAATTGAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
8406212 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
8406235 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
*
8406258 AGTGCTGCAAATTG-AGATGTTTT
1 AGTGCTGCAAATTGAAG-TGTTTA
* *
8406281 A-TCGCTGTAAATTGAAGTGTTAA
1 AGT-GCTGCAAATTGAAGTGTTTA
8406304 AGTGCT
1 AGTGCT
8406310 ACTTTCCATT
Statistics
Matches: 197, Mismatches: 38, Indels: 44
0.71 0.14 0.16
Matches are distributed among these distances:
22 41 0.21
23 151 0.77
24 5 0.03
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (23 bp):
AGTGCTGCAAATTGAAGTGTTTA
Found at i:8406199 original size:91 final size:91
Alignment explanation
Indices: 8406039--8406304 Score: 421
Period size: 91 Copynumber: 2.9 Consensus size: 91
8406029 TAGTGCTGCA
* * *
8406039 AATTGA-AGTGTTTAAGTGCTGCAAGTTGAAGTACTTAGTTGCTGGAAACTGAGATGTTTTATCG
1 AATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCG
8406103 CTGTAATTGAGGTGTATAAATGTTGTT
65 CTGTAATTGAGGTGTATAAATGTTGTT
*
8406130 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGT
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGC
8406195 TGTAATTGAGGTGTATAAATGTTGTT
66 TGTAATTGAGGTGTATAAATGTTGTT
* *
8406221 AATTGATATGTTTAAGTGCTGCAAATTGAAGTGTTTAAG-TGCTGCAAATTGAGATGTTTTATCG
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTT-AGTTGCTGGAAATTGAGATGTTTTATCG
*
8406285 CTGTAAATTGAAGTGT-TAAA
65 CTGT-AATTGAGGTGTATAAA
8406305 GTGCTACTTT
Statistics
Matches: 164, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
91 151 0.92
92 13 0.08
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.40
Consensus pattern (91 bp):
AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGC
TGTAATTGAGGTGTATAAATGTTGTT
Found at i:8407309 original size:42 final size:43
Alignment explanation
Indices: 8407227--8407490 Score: 338
Period size: 42 Copynumber: 6.2 Consensus size: 43
8407217 GAGAAAGTGT
* * * * * *
8407227 CGCTAAAGGTCTTGTTTTTTTAACGGCGCTTCAGGAAAAAGCGC
1 CGCTAAAGGTCTTG-GTCTTTAGCGGCGTTTGAGGGAAAAGCGC
*
8407271 CGCTAAAGGTCTT-GTTTTTAGCGGCGTTTGAGGGAAAAGCGC
1 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
* **
8407313 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAAAAAAGCGC
1 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
*
8407356 CGCTAAAGGTCTTGGTCTTTAGCGGCG-TTGGGGGAAAAGCGC
1 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
* *
8407398 CGCTAAAGGTCTTGGTCTTTAGCGGCG-TTGGGGGAAAAGCAC
1 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
* * *
8407440 CGTTAAAGGTCATT-GTCTTTAGCAGCGTTTGTGGGAAAAGCGC
1 CGCTAAAGGTC-TTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
8407483 CGCTAAAG
1 CGCTAAAG
8407491 TTAGCGACGA
Statistics
Matches: 199, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
42 112 0.56
43 74 0.37
44 13 0.07
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (43 bp):
CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGAAAAGCGC
Found at i:8407360 original size:85 final size:84
Alignment explanation
Indices: 8407227--8407490 Score: 343
Period size: 85 Copynumber: 3.1 Consensus size: 84
8407217 GAGAAAGTGT
* * * * *
8407227 CGCTAAAGGTCTTGTTTTTTTAACGGCGCTTCAGG-AAAAAGCGCCGCTAAAGGTCTTGTTTTTA
1 CGCTAAAGGTCTTG-GTCTTTAGCGGCG-TT-GGGAAAAAAGCGCCGCTAAAGGTCTTGTCTTTA
8407291 GCGGCGTTTGAGGGAAAAGCGC
63 GCGGCGTTTGAGGGAAAAGCGC
*
8407313 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
1 CGCTAAAGGTCTTGGTCTTTAGCGGCG-TTGGGAAAAAAGCGCCGCTAAAGGTCTT-GTCTTTAG
*
8407378 CGGCG-TTGGGGGAAAAGCGC
64 CGGCGTTTGAGGGAAAAGCGC
** * *
8407398 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTGGGGGAAAAGCACCGTTAAAGGTCATTGTCTTTAGC
1 CGCTAAAGGTCTTGGTCTTTAGCGGCGTTGGGAAAAAAGCGCCGCTAAAGGTC-TTGTCTTTAGC
* *
8407463 AGCGTTTGTGGGAAAAGCGC
65 GGCGTTTGAGGGAAAAGCGC
8407483 CGCTAAAG
1 CGCTAAAG
8407491 TTAGCGACGA
Statistics
Matches: 159, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
84 34 0.21
85 99 0.62
86 26 0.16
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.27
Consensus pattern (84 bp):
CGCTAAAGGTCTTGGTCTTTAGCGGCGTTGGGAAAAAAGCGCCGCTAAAGGTCTTGTCTTTAGCG
GCGTTTGAGGGAAAAGCGC
Found at i:8412219 original size:18 final size:18
Alignment explanation
Indices: 8412196--8412241 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
8412186 TGTACGAAAT
*
8412196 TGATAAAATAATTAAAAA
1 TGATAAAATAATAAAAAA
8412214 TGATAATAAT-ATAAAAAA
1 TGATAA-AATAATAAAAAA
*
8412232 T-AAAAAATAA
1 TGATAAAATAA
8412242 CAATACTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 3 0.12
17 4 0.17
18 14 0.58
19 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (18 bp):
TGATAAAATAATAAAAAA
Found at i:8412246 original size:25 final size:26
Alignment explanation
Indices: 8412198--8412246 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
8412188 TACGAAATTG
* * *
8412198 ATAAAATAATTAAAAATGATAATAAT
1 ATAAAATAATAAAAAATAACAATAAT
8412224 ATAAAA-AATAAAAAATAACAATA
1 ATAAAATAATAAAAAATAACAATA
8412247 CTAATTCTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (26 bp):
ATAAAATAATAAAAAATAACAATAAT
Found at i:8412975 original size:29 final size:28
Alignment explanation
Indices: 8412942--8413004 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
8412932 GATAAAAATC
8412942 AAAATCAATAAAAGC-TATAAAAATTATTA
1 AAAATCAATAAAA-CATATAAAAA-TATTA
* *
8412971 AAAATTAATAAAACAATATAAAAATATTT
1 AAAATCAATAAAAC-ATATAAAAATATTA
8413000 AAAAT
1 AAAAT
8413005 TTATTAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 1 0.03
29 21 0.70
30 8 0.27
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAATCAATAAAACATATAAAAATATTA
Found at i:8413045 original size:51 final size:51
Alignment explanation
Indices: 8412970--8413082 Score: 120
Period size: 51 Copynumber: 2.2 Consensus size: 51
8412960 AAAAATTATT
* * * * * *
8412970 AAAAATTAATAAAACAATATAAAAATATTTAAAATTTAT-TAAATTTAGAAA
1 AAAAATTAA-AAAAAAATATAAAAAAATATAAAATATATAGAAATATAGAAA
* *
8413021 AAAAATTAAAAAAAAATCGTAAAAAAATATAAAATATATAGAAATATAGGAA
1 AAAAATTAAAAAAAAAT-ATAAAAAAATATAAAATATATAGAAATATAGAAA
*
8413073 AAAATTTAAA
1 AAAAATTAAA
8413083 TTTTTGTAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
50 7 0.14
51 26 0.51
52 18 0.35
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.27
Consensus pattern (51 bp):
AAAAATTAAAAAAAAATATAAAAAAATATAAAATATATAGAAATATAGAAA
Found at i:8413111 original size:19 final size:18
Alignment explanation
Indices: 8413089--8413150 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 18
8413079 TAAATTTTTG
8413089 TAAAATCGTAAGAAAATTA
1 TAAAATCGTAA-AAAATTA
8413108 TAAAAAT-GTAAAGAAA-TA
1 T-AAAATCGTAAA-AAATTA
8413126 TAAAATTCGTAAAAGAATTA
1 TAAAA-TCGTAAAA-AATTA
8413146 TAAAA
1 TAAAA
8413151 ATTATCATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
17 4 0.11
18 6 0.16
19 15 0.41
20 12 0.32
ACGTcount: A:0.61, C:0.03, G:0.10, T:0.26
Consensus pattern (18 bp):
TAAAATCGTAAAAAATTA
Found at i:8413121 original size:20 final size:21
Alignment explanation
Indices: 8413090--8413152 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
8413080 AAATTTTTGT
8413090 AAAATCGT-AAGAAAATTATA
1 AAAATCGTAAAGAAAATTATA
8413110 AAAAT-GTAAAG-AAA-TATA
1 AAAATCGTAAAGAAAATTATA
* *
8413128 AAATTCGTAAA-AGAATTATA
1 AAAATCGTAAAGAAAATTATA
8413148 AAAAT
1 AAAAT
8413153 TATCATACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 16 0.44
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (21 bp):
AAAATCGTAAAGAAAATTATA
Found at i:8413376 original size:20 final size:20
Alignment explanation
Indices: 8413331--8413375 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
8413321 AAAAGACTTT
*
8413331 TTTTTATGTATTTTATAATA
1 TTTTTATGTATTTTATAAGA
*
8413351 TTTTTATGATTTTTTATAAGA
1 TTTTTATG-TATTTTATAAGA
8413372 TTTT
1 TTTT
8413376 ACATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTTATGTATTTTATAAGA
Found at i:8413414 original size:21 final size:21
Alignment explanation
Indices: 8413341--8413443 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 21
8413331 TTTTTATGTA
**
8413341 TTTTATA-ATATTTTTATGAT
1 TTTTATATATATTTTTACAAT
*
8413361 TTTT-TATA-AGATTTTAC-AT
1 TTTTATATATA-TTTTTACAAT
*
8413380 TTTTATGGT-T-TTTTTACAAT
1 TTTTAT-ATATATTTTTACAAT
8413400 TTTTATATATATTTTT-CTAAT
1 TTTTATATATATTTTTAC-AAT
* *
8413421 TTTTA-ATATTTTTATTAAAAT
1 TTTTATATATATTT-TTACAAT
8413442 TT
1 TT
8413444 AATAATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
19 16 0.25
20 28 0.43
21 21 0.32
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTATATATATTTTTACAAT
Found at i:8413463 original size:19 final size:19
Alignment explanation
Indices: 8413390--8413481 Score: 71
Period size: 19 Copynumber: 4.8 Consensus size: 19
8413380 TTTTATGGTT
*
8413390 TTTTTACAATTTTTATATATA
1 TTTTTATAATTTTTA-ATA-A
*
8413411 TTTTTCTAATTTTTAAT-A
1 TTTTTATAATTTTTAATAA
**
8413429 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAATTTTTAATAA
* * *
8413449 TTTTTATAACTTTTATTGA
1 TTTTTATAATTTTTAATAA
*
8413468 TTTTT-TATTTTTTA
1 TTTTTATAATTTTTA
8413482 TATTTCTTTG
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
18 13 0.22
19 23 0.40
20 9 0.16
21 13 0.22
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTTTATAATTTTTAATAA
Found at i:8413585 original size:26 final size:26
Alignment explanation
Indices: 8413551--8413607 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
8413541 TTAGGGACAA
*
8413551 TTAACTTTAATTG-TCAACTGTTAAAG
1 TTAACTTTAA-TGATCAACTGCTAAAG
*
8413577 TTAAGTTTAATGATCAACTGCTAAAG
1 TTAACTTTAATGATCAACTGCTAAAG
8413603 TTAAC
1 TTAAC
8413608 GATCAAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (26 bp):
TTAACTTTAATGATCAACTGCTAAAG
Found at i:8414582 original size:9 final size:9
Alignment explanation
Indices: 8414565--8414601 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
8414555 TGAGTTTTCG
8414565 AATTCGAAT
1 AATTCGAAT
*
8414574 AACTCGAAT
1 AATTCGAAT
8414583 AATTCGAAT
1 AATTCGAAT
8414592 AATTCGAAT
1 AATTCGAAT
8414601 A
1 A
8414602 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8414987 original size:17 final size:17
Alignment explanation
Indices: 8414960--8415020 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
8414950 ACTCTCCCTA
8414960 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
*
8414978 TTTA-TTTCCCAAAACTT
1 TTTACTTTCCCCAAAC-T
*
8414995 TTTATTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
8415014 TTTACTT
1 TTTACTT
8415021 CTCACCATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.11
17 11 0.31
18 7 0.19
19 10 0.28
20 4 0.11
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:8418973 original size:22 final size:22
Alignment explanation
Indices: 8418946--8418987 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8418936 TAAATTTACT
* *
8418946 AAAAATAATTTTATTTATAGTA
1 AAAAATAATATTATATATAGTA
8418968 AAAAATAATATTATATATAG
1 AAAAATAATATTATATATAG
8418988 GATTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
AAAAATAATATTATATATAGTA
Found at i:8425757 original size:109 final size:109
Alignment explanation
Indices: 8425470--8425769 Score: 403
Period size: 110 Copynumber: 2.8 Consensus size: 109
8425460 GAAATTCAAG
* * * *
8425470 AGGATATTT-GGTAATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACG-TTCCT
1 AGGATATTTAGCT-ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
* * * *
8425531 TGAATTTCCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTGAA
65 CGAATTT-CCAAACGTAAAACATTACCTTATTTTGAAAATTTTAAA
* * *
8425577 AGGCTATTTAGCTATTTGGTTGAACGAGAAAAAATCGACACCTAGCACCTTAGGGCATGTTTTCT
1 AGGATATTTAGCTATTTGGTTGAACGAG-AAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
8425642 CGAATTTCCAAACGTAAAACATTACCTTATTTT-AAAATTTTTAAA
65 CGAATTTCCAAACGTAAAACATTACCTTATTTTGAAAA-TTTTAAA
*
8425687 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAAGGCACGTTTTCTC
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
8425752 GAATTTTCAAACGCTAAA
66 GAATTTCCAAACG-TAAA
8425770 TATTGCCTCA
Statistics
Matches: 170, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
107 22 0.13
108 2 0.01
109 50 0.29
110 86 0.51
111 10 0.06
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCAAACGTAAAACATTACCTTATTTTGAAAATTTTAAA
Found at i:8425944 original size:12 final size:12
Alignment explanation
Indices: 8425924--8425976 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
8425914 ACAAATAAAC
8425924 TAAAGCATAAAAA
1 TAAA-CATAAAAA
*
8425937 TAAACATATAAA
1 TAAACATAAAAA
8425949 TAAGTACAT--AAA
1 TAA--ACATAAAAA
8425961 TAAACATAAAAA
1 TAAACATAAAAA
8425973 TAAA
1 TAAA
8425977 GGAAAATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
10 4 0.11
12 23 0.66
13 4 0.11
14 4 0.11
ACGTcount: A:0.68, C:0.08, G:0.04, T:0.21
Consensus pattern (12 bp):
TAAACATAAAAA
Found at i:8426338 original size:3 final size:3
Alignment explanation
Indices: 8426264--8426319 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
8426254 AAATGGAAAT
* * * *
8426264 ATA ATG ATA ATA ATA ATA ATA TTG ATA ATA ATA ATA ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8426312 ATA ATA AT
1 ATA ATA AT
8426320 GGTAACATTA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:8427254 original size:22 final size:20
Alignment explanation
Indices: 8427216--8427255 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8427206 ATTTTACAAC
*
8427216 TCTCTCTTTTTGTTTGTTTT
1 TCTCTCTTTTTCTTTGTTTT
8427236 TCTCTCATTTTTCTGTTGTT
1 TCTCTC-TTTTTCT-TTGTT
8427256 GGTACTGCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.03, C:0.17, G:0.10, T:0.70
Consensus pattern (20 bp):
TCTCTCTTTTTCTTTGTTTT
Found at i:8428380 original size:218 final size:218
Alignment explanation
Indices: 8428045--8428446 Score: 585
Period size: 218 Copynumber: 1.8 Consensus size: 218
8428035 TGTATTGGGA
*
8428045 AGATAAGATTTGCAATCTTCGATCTGCCCCACTGCAACTTTAGAGGGATAAGACCTGCTTACTCA
1 AGATAAGATTTGCAATCTTCGATCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTCA
* **
8428110 GTCTGCTCTGCTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
66 GTCTACTCCACTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
* *
8428175 AGATACGATCTACT-ACTTTAATCCGCTCCTCTGCAACTTCAGGGAGATAGGATTATTGGCTTCA
131 AGATAAGATCT-CTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTCA
8428239 ATCTGCTCCACTGCAACCTCAAGG
195 ATCTGCTCCACTGCAACCTCAAGG
* * * *
8428263 AGATAAGGTTTGCCATCTTC-AGTCTGCCCCGCTGCAACTTCAGGGGGATAAGACCTGCTTACTC
1 AGATAAGATTTGCAATCTTCGA-TCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTC
* * ** *
8428327 AGTCTACTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAG
65 AGTCTACTCCACTGCAACTTCAGGGAGATAAAACCT-GATGCGATCCACTCTACTACAACTTCAG
* ** *
8428391 AGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
129 AGAGATAAGATCTCTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
8428447 TATTTCTTTC
Statistics
Matches: 162, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
217 4 0.02
218 158 0.98
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (218 bp):
AGATAAGATTTGCAATCTTCGATCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTCA
GTCTACTCCACTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
AGATAAGATCTCTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTCAA
TCTGCTCCACTGCAACCTCAAGG
Found at i:8428440 original size:44 final size:44
Alignment explanation
Indices: 8428333--8429495 Score: 406
Period size: 44 Copynumber: 26.7 Consensus size: 44
8428323 ACTCAGTCTA
* * * *
8428333 CTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * *
8428374 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * ** *
8428418 CTCCACTGTAACTTCAGGGAGATAGGATTTAT-TTCTTTCGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGT-TTTAATCTG
* * * * *
8428462 CTTCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * *
8428503 CTCTACTGTAACTTCAGAGAAATAAGATATGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * * **
8428547 CTCCACTGCAACTTCAGGAAGATAGGAT-TAAT-TTCTTTCGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGT-TTTAATCTG
* * * *
8428591 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCG-ATCAA-CT-
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
* **
8428634 CT--ACTGTAACTTCAGAGG-GATAAGATCTGTGATTTTAATCCA
1 CTCCACTGTAACTTCAG-GGAGATAAGATCTGTGGTTTTAATCTG
** * * * * ** **
8428676 CTCCACTACAACTTCAGGAATATAGGAT-TAATTTTTTTCGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGTTTTAATCTG
* * * *** ** *
8428720 CTCCACTATAACCTCAGGAAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* *
8428766 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCG-----ATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
* * * ** *
8428807 CTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * * * * * * *
8428851 CTCTACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGTTTTAATCTG
* * * * *
8428895 CTCCGCTATAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * **
8428939 CTCCACTGTAACCTCAGGGAGATAAGAT-AGT-GTCTTGGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGT-TTTAATCTG
* *** ** *
8428982 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* * * *
8429028 CTCCACTGTAACCTCAGGGAGATAAGACCTGATCG-----ATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TGGTTTTAATCTG
** * * *
8429068 CTCTGCTGTAACTTCAGAGAGATAAGATCCT-TGATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * * * *
8429112 CACCACTGTAA-TCTCAGGGAGATAGGATTACTAT--CTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-T-CTGTGGTTTTAATCTG
* * * *
8429156 CTCTACTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
*** ** *
8429200 CTCCACTGTAACCTT-AGGGAGATAAGATCTGAAATTTTTCGGTCTA
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCTG-TGGTTTT-AATCTG
* * * *** ** *
8429246 CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAAATTTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TGGTTTT-AATCTG
* * * *
8429292 CTCCACTGTAACCTCATGGAGATAAGACCTGATGCG-----ATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
** * *
8429333 CTCTGCTGTAACTTCAGAGAGATAAGATCCT-TGATTTTAATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * *
8429377 CTCCACTGTAA-TCTCAGGGAGATAGGATTACTAT--TTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-T-CTGTGGTTTTAATCTG
* * * * *
8429421 CTCCGCTGTAA-TCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
*
8429465 CTCCACTGTAACCTCAGGGAGATAAGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG
8429496 AAATTCTTCG
Statistics
Matches: 839, Mismatches: 208, Indels: 147
0.70 0.17 0.12
Matches are distributed among these distances:
39 1 0.00
40 35 0.04
41 130 0.15
42 17 0.02
43 45 0.05
44 455 0.54
45 20 0.02
46 136 0.16
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
Found at i:8428471 original size:129 final size:129
Alignment explanation
Indices: 8428328--8428746 Score: 606
Period size: 129 Copynumber: 3.2 Consensus size: 129
8428318 TGCTTACTCA
* *
8428328 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTACTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGTAACTTCAGAG
* * *
8428393 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTTATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* *
8428457 GTCTACTTCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGTAACTTCAGAG
1 GTCTACTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGTAACTTCAGAG
* *
8428522 AAATAAGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* * * **
8428586 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCAACTCTACTGTAACTTCAGA
1 GTCTACTCCACTGCAACCTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGTAACTTCAGA
* * * * * *
8428650 GGGATAAGATCTGTGATTTTAATCCACTCCACTACAACTTCAGGAATATAGGATTAATTTTTTTC
65 GAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* ** *
8428715 GTCTGCTCCACTATAACCTCAGGAAGATAAGA
1 GTCTACTCCACTGCAACCTCAGGGAGATAAGA
8428747 TCTGAAATTC
Statistics
Matches: 265, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
129 263 0.99
130 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
GTCTACTCCACTGCAACCTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGTAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
Found at i:8428792 original size:175 final size:173
Alignment explanation
Indices: 8428546--8428880 Score: 460
Period size: 175 Copynumber: 1.9 Consensus size: 173
8428536 GTTTTAATCC
* * * * *
8428546 GCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTCGTCTGCTCCACTGTAACCTCAGGGA
1 GCTCCACTACAACCTCAGGAAGATAAGATTAAATTCTTTCGTCTACTCCACTGTAACCTCAGGGA
*
8428611 GATAAGACCTGATGCGATCAACTCTACTGTAACTTCAGAGGGATAAGAT-CTGTGATTTTAATCC
66 GATAAGACCTGATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCT-TGATTTTAATCC
*
8428675 ACTCCACTACAACTTCAG-GAATATAGGATTAATTTTTTTCGTCT
130 ACTCCACTACAACTTCAGAG-AGATAGGATTAATTTTTTTCGTCT
*
8428719 GCTCCACTATAACCTCAGGAAGATAAGATCTGAAATTC-TTCGGTCTACTCCACTGTAACCTCAG
1 GCTCCACTACAACCTCAGGAAGATAAGAT-T-AAATTCTTTC-GTCTACTCCACTGTAACCTCAG
** * *
8428783 GGAGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAAT
63 GGAGATAAGACCTGATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAAT
* * **
8428848 CCGCTCTACTGTAACTTCAGAGAGATAGGATTA
128 CCACTCCACTACAACTTCAGAGAGATAGGATTA
8428881 CTAGCTTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
173 25 0.18
174 4 0.03
175 109 0.77
176 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (173 bp):
GCTCCACTACAACCTCAGGAAGATAAGATTAAATTCTTTCGTCTACTCCACTGTAACCTCAGGGA
GATAAGACCTGATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCA
CTCCACTACAACTTCAGAGAGATAGGATTAATTTTTTTCGTCT
Found at i:8428961 original size:88 final size:88
Alignment explanation
Indices: 8428845--8429492 Score: 502
Period size: 88 Copynumber: 7.4 Consensus size: 88
8428835 CCTTTATTTT
* * * * * * *
8428845 AATCCGCTCTACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTATAATCTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATCTC
8428910 AGGGAGATAAGATCTCTGGCTTC
66 AGGGAGATAAGATCTCTGGCTTC
* * *
8428933 AATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TAGT-GTCTTGGATCTGCTCCGCTGTAATCT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAG-CTTCGATCTACTCCGCTGTAATCT
* *
8428996 CAGGGAGATAAGATCTGAAAT-TCTTC
65 CAGGGAGATAAGATCT---CTGGCTTC
** * * * *
8429022 GGTCTACTCCACTGTAACCTCAGGGAGATAAGA--CCT-G-ATCGATCTACTCTGCTGTAA-CTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATC-T
* ** *
8429082 CAGAGAGATAAGATC-CTTGATTTT
65 CAGGGAGATAAGATCTC-TGGCTTC
* * * * * * * **
8429106 AATCCGCACCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCTACTGTAATCTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATCTC
8429171 AGGGAGATAAGATCTCTGGCTTC
66 AGGGAGATAAGATCTCTGGCTTC
* * ** * * *
8429194 AATCTGCTCCACTGTAACCTTAGGGAGATAAGATCTGA-AATTTTTCGGTCTACTCCACTGTAAC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-T-ACTA-GCTTCGATCTACTCCGCTGTAAT
* **
8429258 CTCAGGGAGATAAGGT-T-TGAAAATTTTC
63 CTCAGGGAGATAAGATCTCTG----GCTTC
** * * * * * *
8429286 GGTCTACTCCACTGTAACCTCATGGAGATAAGA--CCT-GATGCGATCTACTCTGCTGTAA-CTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATC-T
* ** *
8429347 CAGAGAGATAAGATC-CTTGATTTT
65 CAGGGAGATAAGATCTC-TGGCTTC
* * ** * *
8429371 AATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTATTTTCAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATCTC
*
8429436 AGAGAGATAAGATCTCTGGCTTC
66 AGGGAGATAAGATCTCTGGCTTC
8429459 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
8429493 CTGAAATTCT
Statistics
Matches: 437, Mismatches: 93, Indels: 60
0.74 0.16 0.10
Matches are distributed among these distances:
83 1 0.00
84 28 0.06
85 31 0.07
86 35 0.08
87 70 0.16
88 164 0.38
89 43 0.10
90 34 0.08
92 31 0.07
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATTACTAGCTTCGATCTACTCCGCTGTAATCTC
AGGGAGATAAGATCTCTGGCTTC
Found at i:8429405 original size:265 final size:265
Alignment explanation
Indices: 8428715--8429542 Score: 1294
Period size: 265 Copynumber: 3.1 Consensus size: 265
8428705 AATTTTTTTC
* * *
8428715 GTCTGCTCCACTATAACCTCAGGAAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
* * * *
8428780 CAGGGAGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTT
66 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTT
* * * * *
8428845 AATCCGCTCTACTGTAA-CTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTATAATCT
131 AATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
*
8428909 CAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA--T--AGT
195 CAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
8428970 GTCTT-G
260 -TCTTCG
* * *
8428976 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
1 G-TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
8429041 TCAGGGAGATAAGACCTGAT-CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTT
65 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTT
* **
8429105 TAATCCGCACCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCTACTGTAATCT
130 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
*
8429170 CAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTTAGGGAGATAAGATCTGAAAT
195 CAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
*
8429235 TTTTCG
260 TCTTCG
* *
8429241 GTCTACTCCACTGTAACCTCAGGGAGATAAGGTTTGAAAATT-TTCGGTCTACTCCACTGTAACC
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGATCTG-AAATTCTTCGGTCTACTCCACTGTAACC
*
8429305 TCATGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTT
65 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTT
* *
8429370 TAATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTATTTTCAATCTGCTCCGCTGTAATCT
130 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
*
8429435 CAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
195 CAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
8429500 TCTTCG
260 TCTTCG
** *
8429506 GTCTACTCCACTGTAACCTCAATGAGATAAGACCTGA
1 GTCTACTCCACTGTAACCTCAGGGAGATAAGATCTGA
8429543 TGCGATCTAC
Statistics
Matches: 520, Mismatches: 38, Indels: 15
0.91 0.07 0.03
Matches are distributed among these distances:
261 152 0.29
262 80 0.15
263 1 0.00
264 75 0.14
265 212 0.41
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (265 bp):
GTCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTT
AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
CTTCG
Found at i:8429535 original size:219 final size:218
Alignment explanation
Indices: 8428890--8429670 Score: 752
Period size: 219 Copynumber: 3.6 Consensus size: 218
8428880 ACTAGCTTCA
* * * ** * *
8428890 ATCTACTCCGCTATAA-TCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCTGCTGTAACT-TCAGAGAGATAAGATCCT-TGATTTTAATCTGCTCCACTGTAATCT
* * ** *
8428953 CAGGGAGATAAGA-TAGTGTCTTGGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
64 CAGGGAGATAGGATTACTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT---CT
* ** * * **
8429017 TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG---A---TCGATCTACTCTGCTG
126 GCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAATTTTCGGTCTACTCCACTG
* ***
8429076 TAACTTCA-GAGAGATAAGATCCTTGATTTTA
191 TAACCTCATG-GAGATAAGA-CC-TGA-TGCG
** * ** * * * * *
8429107 ATCCGCACCACTGTAA-TCTCAGGGAGATAGGATTAC-T-ATCTTCAATCTGCTCTACTGTAATC
1 ATCTACTCTGCTGTAACT-TCAGAGAGATAAGA-TCCTTGAT-TTTAATCTGCTCCACTGTAATC
* * * * *
8429169 TCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTTAGGGAGATAAGATCTGAA
63 TCAGGGAGATAGGAT-TACTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT---
* ** ** * *
8429233 ATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGGTTTGAAAATTTTCGGTCTACTCCAC
124 CTGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAATTTTCGGTCTACTCCAC
8429298 TGTAACCTCATGGAGATAAGACCTGATGCG
189 TGTAACCTCATGGAGATAAGACCTGATGCG
8429328 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCTGCTCCACTGTAATCTCA
1 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCTGCTCCACTGTAATCTCA
* * *
8429393 GGGAGATAGGATTACTATTTTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTT
66 GGGAGATAGGATTACTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT-GCTT
*
8429458 CAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG-AAATTCTTCGGTCTACTCCACTGTAA
130 CAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAATT-TTCGGTCTACTCCACTGTAA
8429522 CCTCAAT-GAGATAAGACCTGATGCG
194 CCTC-ATGGAGATAAGACCTGATGCG
* * * * *
8429547 ATCTACTCTGCTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGCAA-CTTT
1 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCTGCTCCACTGTAATC-TC
* *
8429611 AGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
65 AGGGAGATAGGATTACTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
8429671 AATATTCACT
Statistics
Matches: 480, Mismatches: 64, Indels: 39
0.82 0.11 0.07
Matches are distributed among these distances:
217 61 0.13
218 131 0.27
219 148 0.31
220 5 0.01
221 97 0.20
222 6 0.01
223 2 0.00
224 29 0.06
225 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCTGCTCCACTGTAATCTCA
GGGAGATAGGATTACTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGCTTC
AATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAATTTTCGGTCTACTCCACTGTAACC
TCATGGAGATAAGACCTGATGCG
Found at i:8430160 original size:17 final size:17
Alignment explanation
Indices: 8430147--8430197 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
8430137 TCTCTTCTCC
8430147 GAGGTAACCTCTTCCTA
1 GAGGTAACCTCTTCCTA
8430164 GAGGTAACCTCTTCCTA
1 GAGGTAACCTCTTCCTA
8430181 GAGGTAACCTCTTCCTA
1 GAGGTAACCTCTTCCTA
8430198 TTGCCCGATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (17 bp):
GAGGTAACCTCTTCCTA
Found at i:8431851 original size:6 final size:6
Alignment explanation
Indices: 8431792--8431854 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
8431782 TTTTTGTTTT
* * *
8431792 TTTTTA TTTTGA TTTTTGA TTTTTGA -TTT-- TTTTCA TTTTCA TTTTGA
1 TTTTGA TTTTGA -TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
*
8431839 CTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
8431855 TCTTTTTCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 3 0.06
5 3 0.06
6 30 0.61
7 13 0.27
ACGTcount: A:0.14, C:0.05, G:0.10, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:8435367 original size:110 final size:109
Alignment explanation
Indices: 8435222--8435490 Score: 396
Period size: 110 Copynumber: 2.5 Consensus size: 109
8435212 AAATTGAAAT
* * *
8435222 CCAGCACCTTAGGGCACG-TTCCTTGAATTTCCCAAACGCAAAACATTGCCTTATTTTGAAATTT
1 CCAGCACCTTAGGGCACGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTATTTTAAAATTT
* * *
8435286 TTGAAAGGTTATTTAGCTATTTGGTTGAACGAGAAAAAATCGACAC
65 TTAAAAGGATATTTAGCTACTTGGTTGAACGAG-AAAAATCGACAC
* *
8435332 CCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACACAAAACATTGCCTTATTTTAAAATTTT
1 CCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTT
*
8435397 TAAAAGGATATTTAGTTACTTGGTTGAACGAGAAAAATCGACAC
66 TAAAAGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACAC
* * * *
8435441 CCAGCACCTTAAGGCACGTTTTATCGAATTTCCAAACGCTAAATATTGCC
1 CCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
8435491 CCAATTAGAA
Statistics
Matches: 143, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
109 56 0.39
110 77 0.54
111 10 0.07
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (109 bp):
CCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTT
TAAAAGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACAC
Found at i:8435998 original size:15 final size:15
Alignment explanation
Indices: 8435974--8436024 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
8435964 AAATGGAAAT
8435974 ATAATGATAATAATA
1 ATAATGATAATAATA
*
8435989 ATATTGATAATAATA
1 ATAATGATAATAATA
8436004 ATAATGATAATAATA
1 ATAATGATAATAATA
8436019 ATAATG
1 ATAATG
8436025 GGAACATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (15 bp):
ATAATGATAATAATA
Found at i:8436042 original size:3 final size:3
Alignment explanation
Indices: 8435974--8436023 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
8435964 AAATGGAAAT
* * * *
8435974 ATA ATG ATA ATA ATA ATA TTG ATA ATA ATA ATA ATG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8436022 AT
1 AT
8436024 GGGAACATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:8437730 original size:22 final size:20
Alignment explanation
Indices: 8437668--8437731 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
8437658 ATTAACGATA
8437668 ATTTCTTTTTCTTTATTTTTTT
1 ATTTC-TTTTCTTT-TTTTTTT
* *
8437690 ATTTCTTTT-TGGTTGTTTTCT
1 ATTTCTTTTCT--TTTTTTTTT
8437711 ATCTTCTTTTCTTTTTTTTTT
1 AT-TTCTTTTCTTTTTTTTTT
8437732 CGTGGGGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 14 0.41
23 1 0.03
ACGTcount: A:0.06, C:0.11, G:0.05, T:0.78
Consensus pattern (20 bp):
ATTTCTTTTCTTTTTTTTTT
Found at i:8441822 original size:18 final size:18
Alignment explanation
Indices: 8441799--8441858 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
8441789 ATGGACAGTT
8441799 GAACAAGTTGACAATCAA
1 GAACAAGTTGACAATCAA
*
8441817 GAACAAG-T-AC--TCGTTA
1 GAACAAGTTGACAATC--AA
*
8441833 GAACAAGTTGACAATTAA
1 GAACAAGTTGACAATCAA
8441851 GAACAAGT
1 GAACAAGT
8441859 ACCCGTTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
14 2 0.06
16 10 0.30
17 2 0.06
18 18 0.55
20 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
GAACAAGTTGACAATCAA
Found at i:8441842 original size:34 final size:34
Alignment explanation
Indices: 8441799--8441866 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
8441789 ATGGACAGTT
*
8441799 GAACAAGTTGACAATCAAGAACAAGTACTCGTTA
1 GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
*
8441833 GAACAAGTTGACAATTAAGAACAAGTACCCGTTA
1 GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
8441867 CAGAGGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
Found at i:8445525 original size:62 final size:62
Alignment explanation
Indices: 8445428--8445627 Score: 188
Period size: 63 Copynumber: 3.2 Consensus size: 62
8445418 CACGGGCAAC
* * ** * *
8445428 GGACACGGGCATGTGTCTGGGCCATGTAACTCACTGTTTATGGAACAAGACCATACGGCCAG
1 GGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTATGCAAAAAGACCATACGGCCAG
* * * * * * **
8445490 GGACACGGGTGTGTGCCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAAG-TCACACGGGAAG
1 GGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTAT-GCA-AAAAGACCATACGGCCAG
* * * *
8445553 GGACA-GTGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAACCATACGGCCAG
1 GGACACG-GGCGTGTGCCCAGGCCATGTAACTCACTGTTTATGCAAAAAGACCATACGGCCAG
8445615 GGCACACGGGCGT
1 GG-ACACGGGCGT
8445628 ATGACCCGGC
Statistics
Matches: 106, Mismatches: 26, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
61 4 0.04
62 47 0.44
63 50 0.47
64 5 0.05
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (62 bp):
GGACACGGGCGTGTGCCCAGGCCATGTAACTCACTGTTTATGCAAAAAGACCATACGGCCAG
Found at i:8445570 original size:125 final size:127
Alignment explanation
Indices: 8445415--8445642 Score: 347
Period size: 125 Copynumber: 1.8 Consensus size: 127
8445405 AGTGCCGGGT
* * * *
8445415 TCACACGGGCAACGGACACGGGCATGTGTCTGGGCCATGTAACTCACTGTTTATGGAACAAGACC
1 TCACACGGGCAACGGACACGGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAACC
* *
8445480 ATACGGCCAGGG-ACACGGGTGTGTG-CCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAAG
66 ATACGGCCAGGGCACACGGGCGTATGACCC-GGCCGTGTAACTCACTGTTTGTAGTATAAAAG
*
8445541 TCACACGGG-AAGGGACA-GTGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAAC
1 TCACACGGGCAACGGACACG-GGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAAC
8445604 CATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGT
65 CATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGT
8445643 GGCAGATTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
124 1 0.01
125 60 0.65
126 28 0.30
127 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (127 bp):
TCACACGGGCAACGGACACGGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAACC
ATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGTAACTCACTGTTTGTAGTATAAAAG
Found at i:8454014 original size:22 final size:22
Alignment explanation
Indices: 8453979--8454032 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8453969 ATATTTCTTT
8453979 AATTA-ATTTAATTTTAAAATC
1 AATTATATTTAATTTTAAAATC
* *
8454000 AATTATATTTTATTTTGAAATC
1 AATTATATTTAATTTTAAAATC
*
8454022 AATTCTATTTA
1 AATTATATTTA
8454033 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
AATTATATTTAATTTTAAAATC
Found at i:8459890 original size:40 final size:40
Alignment explanation
Indices: 8459839--8459945 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 40
8459829 TTTGGACAAA
* * *
8459839 AAACGCCGCTAAAAATCGAGCATTAGCGGCGCATTTAGGA-
1 AAACGCTGCTAAAAATAGAGCATTAGCGGCAC-TTTAGGAG
* * * **
8459879 AAACGTTGCT-AAAGTAAAGCATTAGCGGCACTTTTTGAG
1 AAACGCTGCTAAAAATAGAGCATTAGCGGCACTTTAGGAG
8459918 AAACGCTGCTAAAAATAGAGCATTAGCG
1 AAACGCTGCTAAAAATAGAGCATTAGCG
8459946 CCGTTTATAA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
38 5 0.09
39 26 0.48
40 23 0.43
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (40 bp):
AAACGCTGCTAAAAATAGAGCATTAGCGGCACTTTAGGAG
Found at i:8460260 original size:7 final size:7
Alignment explanation
Indices: 8460224--8460277 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
8460214 TTGAGTTCAA
*
8460224 GGTTTAT
1 GGTTTAG
*
8460231 GGTGTA-
1 GGTTTAG
8460237 GGTTTAG
1 GGTTTAG
*
8460244 GGCTTAG
1 GGTTTAG
*
8460251 GGTTTGG
1 GGTTTAG
*
8460258 GGTTTAA
1 GGTTTAG
8460265 GGTTTAG
1 GGTTTAG
8460272 GGTTTA
1 GGTTTA
8460278 CGTTTTAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 5 0.13
7 33 0.87
ACGTcount: A:0.15, C:0.02, G:0.41, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:8460263 original size:21 final size:21
Alignment explanation
Indices: 8460237--8460276 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8460227 TTATGGTGTA
*
8460237 GGTTTAGGGCTTAGGGTTTGG
1 GGTTTAAGGCTTAGGGTTTGG
*
8460258 GGTTTAAGGTTTAGGGTTT
1 GGTTTAAGGCTTAGGGTTT
8460277 ACGTTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGCTTAGGGTTTGG
Found at i:8460373 original size:21 final size:21
Alignment explanation
Indices: 8460349--8460389 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8460339 TAGGGCTTGA
* *
8460349 TGTTTATGGTTTACGGTTTAG
1 TGTTAATGGTTTAAGGTTTAG
8460370 TGTTAATGGTTTAAGGTTTA
1 TGTTAATGGTTTAAGGTTTA
8460390 CACAATGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (21 bp):
TGTTAATGGTTTAAGGTTTAG
Found at i:8461854 original size:31 final size:31
Alignment explanation
Indices: 8461813--8461892 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
8461803 TTGGATTTTA
* *
8461813 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACATTCT
*
8461844 ATTGGGTTTTGCTGCTAAGATGGTACATTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACATTCT
*
8461875 ATTGATTTTTGCTGCTAA
1 ATTGGTTTTTGCTGCTAA
8461893 ATCAACCATG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.44
Consensus pattern (31 bp):
ATTGGTTTTTGCTGCTAAGATGGTACATTCT
Found at i:8462738 original size:12 final size:12
Alignment explanation
Indices: 8462721--8462748 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8462711 GCTAGCCTTG
8462721 ATGTTACTATTA
1 ATGTTACTATTA
8462733 ATGTTACTATTA
1 ATGTTACTATTA
8462745 ATGT
1 ATGT
8462749 CCTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (12 bp):
ATGTTACTATTA
Found at i:8464111 original size:43 final size:42
Alignment explanation
Indices: 8464044--8464186 Score: 160
Period size: 43 Copynumber: 3.2 Consensus size: 42
8464034 TTTTTATGAC
*
8464044 CTTTAGCAGCGTTTGTGGTTAAAGCGCCACTAAAGATCATGTT
1 CTTTAGCGGCGTTTGTGG-TAAAGCGCCACTAAAGATCATGTT
* * * *
8464087 CTTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAGATTATGTT
1 CTTTAGCGGCGTTTGTGGT-AAAGCGCCACTAAAGATCATGTT
* *
8464130 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAGCTAAAGAACATGAT
1 CTTTAGCGGCGTTTGT-GGTAAAGCG-C-C-A-CTAAAGATCATGTT
8464177 CTTTAGCGGC
1 CTTTAGCGGC
8464187 ATTTTTTCTC
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 57 0.69
44 3 0.04
45 1 0.01
47 21 0.25
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
CTTTAGCGGCGTTTGTGGTAAAGCGCCACTAAAGATCATGTT
Found at i:8468065 original size:41 final size:42
Alignment explanation
Indices: 8468020--8468139 Score: 118
Period size: 41 Copynumber: 2.9 Consensus size: 42
8468010 GATTTCTTTG
* * *
8468020 AAGCGTCGCTAATATTTGGTCTTTTAGCGGCGTTTTTAT-AT
1 AAGCGACGCTAATATTAGGACTTTTAGCGGCGTTTTTATGAT
* ***
8468061 AAGCGACGCTAA-AGTTAAGACTTTTAGCGGCGTGGCTATGAT
1 AAGCGACGCTAATA-TTAGGACTTTTAGCGGCGTTTTTATGAT
* * **
8468103 AAGCGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTT
1 AAGCGACGCTAATATTAGGACTTTTAGCGGCGTTTTT
8468140 GTTGAAGCGC
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
40 1 0.02
41 30 0.49
42 30 0.49
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.35
Consensus pattern (42 bp):
AAGCGACGCTAATATTAGGACTTTTAGCGGCGTTTTTATGAT
Found at i:8468114 original size:42 final size:41
Alignment explanation
Indices: 8468040--8468135 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 41
8468030 AATATTTGGT
***
8468040 CTTTTAGCGGCGTTTTTATATAAGCGACGCTAAAGTTAAGA
1 CTTTTAGCGGCGTGGCTATATAAGCGACGCTAAAGTTAAGA
* * * *
8468081 CTTTTAGCGGCGTGGCTATGATAAGCGCCGCTAATGTTAGGG
1 CTTTTAGCGGCGTGGCTAT-ATAAGCGACGCTAAAGTTAAGA
*
8468123 GTTTTAGCGGCGT
1 CTTTTAGCGGCGT
8468136 TTTTGTTGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
41 16 0.35
42 30 0.65
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (41 bp):
CTTTTAGCGGCGTGGCTATATAAGCGACGCTAAAGTTAAGA
Found at i:8468138 original size:83 final size:82
Alignment explanation
Indices: 8467940--8468140 Score: 201
Period size: 82 Copynumber: 2.4 Consensus size: 82
8467930 TTTAGGCTTT
* * * * *
8467940 CGCCGCTAATGGTCAGGGGTTTTAGTGGCATTTTTGATCAACCGTCGCTAAAGTTAAGGTATTTA
1 CGCCGCTAAT-GTTAGGGGTTTTAGCGGCGTTTTTGATCAACCGACGCTAAAGTTAAGCTATTTA
** *
8468005 GCGGCGATTTCTTTGAAG
65 GCGGCGATGGCTATGAAG
* * * ** * *
8468023 CGTCGCTAATATTTGGTCTTTTAGCGGCGTTTTT-ATATAAGCGACGCTAAAGTTAAGACT-TTT
1 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGAT-CAACCGACGCTAAAGTTAAG-CTATTT
8468086 AGCGGCG-TGGCTATGATAAG
64 AGCGGCGATGGCTATG--AAG
8468106 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTG
1 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTG
8468141 TTGAAGCGCC
Statistics
Matches: 93, Mismatches: 20, Indels: 9
0.76 0.16 0.07
Matches are distributed among these distances:
81 7 0.08
82 44 0.47
83 42 0.45
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (82 bp):
CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGATCAACCGACGCTAAAGTTAAGCTATTTAG
CGGCGATGGCTATGAAG
Found at i:8468148 original size:83 final size:81
Alignment explanation
Indices: 8467940--8468148 Score: 197
Period size: 83 Copynumber: 2.5 Consensus size: 81
8467930 TTTAGGCTTT
* * * * * * *
8467940 CGCCGCTAATGGTCAGGGGTTTTAGTGGCATTTTTGATCAACCGTCGCTAAAGTTAAGGTATTTA
1 CGCCGCTAAT-GTTAGGGGTTTTAGCGGCGTTTTTG-TTAAGCGACGCTAAAGTTAAGCTATTTA
** *
8468005 GCGGCGATTTCTTTGAAG
64 GCGGCGATGGCTATGAAG
* * * ** *
8468023 CGTCGCTAATATTTGGTCTTTTAGCGGCGTTTTTATATAAGCGACGCTAAAGTTAAGACT-TTTA
1 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGT-TAAGCGACGCTAAAGTTAAG-CTATTTA
8468087 GCGGCG-TGGCTATGATAAG
64 GCGGCGATGGCTATG--AAG
8468106 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTTGAAGCG
1 CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTT-AAGCG
8468149 CCACAAAAAA
Statistics
Matches: 99, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
81 6 0.06
82 45 0.45
83 48 0.48
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (81 bp):
CGCCGCTAATGTTAGGGGTTTTAGCGGCGTTTTTGTTAAGCGACGCTAAAGTTAAGCTATTTAGC
GGCGATGGCTATGAAG
Found at i:8468372 original size:23 final size:21
Alignment explanation
Indices: 8468346--8468390 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
8468336 AATACTGCTT
8468346 ATTTTTATATTATATATAGTAAA
1 ATTTTTATA-TATA-ATAGTAAA
* *
8468369 ATTTTTTTATATAATCGTAAA
1 ATTTTTATATATAATAGTAAA
8468390 A
1 A
8468391 CAGATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 4 0.20
23 8 0.40
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTTTTATATATAATAGTAAA
Found at i:8469144 original size:15 final size:15
Alignment explanation
Indices: 8469126--8469164 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
8469116 GGTTTAGGGG
8469126 TTAGGGGTTA-GAGAT
1 TTAGGGGTTAGGA-AT
8469141 TTAGGGG-TAGGAAT
1 TTAGGGGTTAGGAAT
8469155 TTAGGGGTTA
1 TTAGGGGTTA
8469165 AGGGTAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.33
Consensus pattern (15 bp):
TTAGGGGTTAGGAAT
Found at i:8469159 original size:36 final size:38
Alignment explanation
Indices: 8469118--8469219 Score: 147
Period size: 36 Copynumber: 2.8 Consensus size: 38
8469108 GGATATAAGG
*
8469118 TTTAGGGGTTAGGGGTTAGAGATTTAGGGG-TAGGA-A
1 TTTAGGGGTTAAGGGTTAGAGATTTAGGGGCTAGGAGA
*
8469154 TTTAGGGGTTAAGGGTAAGA-ATTTAGGGGCTAGGAGA
1 TTTAGGGGTTAAGGGTTAGAGATTTAGGGGCTAGGAGA
* *
8469191 TTTAGGAGTTAAGGGTTAGGGATTTAGGG
1 TTTAGGGGTTAAGGGTTAGAGATTTAGGG
8469220 TTTAGGGCGT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
35 9 0.16
36 23 0.40
37 18 0.31
38 8 0.14
ACGTcount: A:0.26, C:0.01, G:0.42, T:0.30
Consensus pattern (38 bp):
TTTAGGGGTTAAGGGTTAGAGATTTAGGGGCTAGGAGA
Found at i:8471921 original size:13 final size:13
Alignment explanation
Indices: 8471903--8471932 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8471893 AAAGTTGTTA
8471903 AATATTTGGTATT
1 AATATTTGGTATT
8471916 AATATTTGGTATT
1 AATATTTGGTATT
8471929 AATA
1 AATA
8471933 ATGAAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (13 bp):
AATATTTGGTATT
Found at i:8472822 original size:13 final size:13
Alignment explanation
Indices: 8472776--8472867 Score: 91
Period size: 13 Copynumber: 6.9 Consensus size: 13
8472766 TATAACTTAC
8472776 ATTACTTAAATAT
1 ATTACTTAAATAT
* *
8472789 ATTAATTACTAAAAT
1 ATTACTTA--AATAT
8472804 -TTACTTAAATAT
1 ATTACTTAAATAT
*
8472816 ATTACTTAAATAC
1 ATTACTTAAATAT
8472829 ATTACTTACTAGA-AT
1 ATTACTTA--A-ATAT
8472844 -TTACTTAAATAT
1 ATTACTTAAATAT
8472856 ATTACTTAAATA
1 ATTACTTAAATA
8472868 CATGACTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 7 0.11
13 37 0.57
14 13 0.20
15 6 0.09
16 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (13 bp):
ATTACTTAAATAT
Found at i:8472838 original size:40 final size:38
Alignment explanation
Indices: 8472759--8473011 Score: 228
Period size: 40 Copynumber: 6.5 Consensus size: 38
8472749 TATATATTTT
* * * *
8472759 TAAAATTTATAACTTACATTACTTAAATATATTAATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTACTTAC
8472798 TAAAATTTACTTAAATATATTACTTAAATACATTACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
* *
8472838 TAGAATTTACTTAAATATATTACTTAAATACATGACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
**
8472878 TAAAA-TTA-AAGTATATATTACATTACTTACATTACTTAC
1 TAAAATTTATAA--ATATATTAC-TTAAATACATTACTTAC
* * *
8472917 TAAAA--TAT-ATTACATTACTTAAATATATTACTTAC
1 TAAAATTTATAAATATATTACTTAAATACATTACTTAC
* * * *
8472952 AAAAATTTATAACTTACATTACTTAAATATATTACATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTAC-TTAC
*
8472992 TTAAAATTTATATATATATT
1 -TAAAATTTATAAATATATT
8473012 TAAAATATAT
Statistics
Matches: 182, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
35 18 0.10
36 9 0.05
37 3 0.02
38 13 0.07
39 53 0.29
40 73 0.40
41 13 0.07
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (38 bp):
TAAAATTTATAAATATATTACTTAAATACATTACTTAC
Found at i:8472875 original size:13 final size:13
Alignment explanation
Indices: 8472773--8472876 Score: 79
Period size: 13 Copynumber: 7.8 Consensus size: 13
8472763 ATTTATAACT
8472773 TACATTACTTAAA
1 TACATTACTTAAA
* *
8472786 TATATTAATTACTAA
1 TACATTACTTA--AA
8472801 -A-ATTTACTTAAA
1 TACA-TTACTTAAA
*
8472813 TATATTACTTAAA
1 TACATTACTTAAA
*
8472826 TACATTACTT-AC
1 TACATTACTTAAA
*
8472838 TAGAATTTACTTAAA
1 TA-CA-TTACTTAAA
*
8472853 TATATTACTTAAA
1 TACATTACTTAAA
*
8472866 TACATGACTTA
1 TACATTACTTA
8472877 CTAAAATTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
12 5 0.07
13 48 0.66
14 15 0.21
15 5 0.07
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (13 bp):
TACATTACTTAAA
Found at i:8472932 original size:22 final size:21
Alignment explanation
Indices: 8472904--8472994 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 21
8472894 ATTACATTAC
8472904 TTACATTACTTACTAAAATATA
1 TTACATTACTTA-TAAAATATA
8472926 TTACATTAC-T-T-AAATATA
1 TTACATTACTTATAAAATATA
*
8472944 TTAC-TTAC--A-AAAATTTA
1 TTACATTACTTATAAAATATA
* *
8472961 TAAC-TTACATTACTTAAATATA
1 TTACATTAC-TTA-TAAAATATA
8472983 TTACATTACTTA
1 TTACATTACTTA
8472995 AAATTTATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
17 17 0.30
18 11 0.20
19 1 0.02
20 1 0.02
21 1 0.02
22 21 0.38
23 4 0.07
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (21 bp):
TTACATTACTTATAAAATATA
Found at i:8472934 original size:18 final size:18
Alignment explanation
Indices: 8472908--8472998 Score: 96
Period size: 18 Copynumber: 4.9 Consensus size: 18
8472898 CATTACTTAC
8472908 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
*
8472925 ATTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
*
8472943 ATTAC-TTACAAAAATTTAT
1 ATTACATTACTAAAA--TAT
*
8472962 AACTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
8472982 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
8472999 TTATATATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.20
18 25 0.41
19 9 0.15
20 4 0.07
21 4 0.07
22 7 0.11
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:8472957 original size:17 final size:17
Alignment explanation
Indices: 8472908--8472969 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
8472898 CATTACTTAC
*
8472908 ATTACTTACTAAAATAT
1 ATTACTTACAAAAATAT
**
8472925 ATTACATTACTTAAATAT
1 ATTAC-TTACAAAAATAT
*
8472943 ATTACTTACAAAAATTT
1 ATTACTTACAAAAATAT
*
8472960 ATAACTTACA
1 ATTACTTACA
8472970 TTACTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 23 0.59
18 16 0.41
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTACTTACAAAAATAT
Found at i:8473284 original size:9 final size:9
Alignment explanation
Indices: 8473266--8473560 Score: 182
Period size: 9 Copynumber: 34.8 Consensus size: 9
8473256 CTTATATATA
*
8473266 AACTTGCAT
1 AACTTACAT
8473275 AACTTACAT
1 AACTTACAT
*
8473284 AA-TAACATAAT
1 AACTTAC---AT
8473295 AACTTACAT
1 AACTTACAT
8473304 AA--TACAT
1 AACTTACAT
* *
8473311 AGCCTACAT
1 AACTTACAT
8473320 AACTTACAT
1 AACTTACAT
*
8473329 AA--TACAC
1 AACTTACAT
8473336 AACTTACAT
1 AACTTACAT
*
8473345 AACTTAAAT
1 AACTTACAT
8473354 AACTTACAT
1 AACTTACAT
8473363 AA--TACAT
1 AACTTACAT
***
8473370 AACTTTGGT
1 AACTTACAT
*
8473379 AACTAACAT
1 AACTTACAT
* *
8473388 TA--TACAC
1 AACTTACAT
*
8473395 GACTTACAT
1 AACTTACAT
8473404 AA--TACAT
1 AACTTACAT
* *
8473411 TACTTACTT
1 AACTTACAT
*
8473420 AACATACAT
1 AACTTACAT
*
8473429 AACCTACAT
1 AACTTACAT
8473438 AACTTACAT
1 AACTTACAT
*
8473447 AA--TACAC
1 AACTTACAT
8473454 AACTTACAT
1 AACTTACAT
*
8473463 AACTTAAAT
1 AACTTACAT
8473472 AACTTACAT
1 AACTTACAT
8473481 AA--TACAT
1 AACTTACAT
**
8473488 AACTTTGAT
1 AACTTACAT
*
8473497 AACTAACAT
1 AACTTACAT
* *
8473506 TA--TACAC
1 AACTTACAT
8473513 AACTTACAT
1 AACTTACAT
8473522 AA--TACAT
1 AACTTACAT
*
8473529 TACTTACAT
1 AACTTACAT
*
8473538 AGCTTACAT
1 AACTTACAT
8473547 AA--TACAT
1 AACTTACAT
8473554 AACTTAC
1 AACTTAC
8473561 CCGTGCAATT
Statistics
Matches: 214, Mismatches: 48, Indels: 48
0.69 0.15 0.15
Matches are distributed among these distances:
7 59 0.28
8 3 0.01
9 145 0.68
11 4 0.02
12 3 0.01
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:8473298 original size:20 final size:19
Alignment explanation
Indices: 8473273--8473371 Score: 73
Period size: 20 Copynumber: 5.1 Consensus size: 19
8473263 ATAAACTTGC
8473273 ATAACTTACATAATAACATA
1 ATAACTTACATAAT-ACATA
8473293 ATAACTTACATAATACATAGCCTA
1 ATAACTTACATAATAC--A---TA
8473317 CATAACTTACATAATAC---
1 -ATAACTTACATAATACATA
* *
8473334 ACAACTTACAT-A-ACTTAA
1 ATAACTTACATAATACAT-A
8473352 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
8473371 A
1 A
8473372 CTTTGGTAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 25
0.70 0.03 0.27
Matches are distributed among these distances:
14 2 0.03
15 1 0.02
16 10 0.16
18 10 0.16
19 5 0.08
20 17 0.27
21 1 0.02
24 2 0.03
25 16 0.25
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:8473323 original size:25 final size:25
Alignment explanation
Indices: 8473272--8473355 Score: 97
Period size: 25 Copynumber: 3.6 Consensus size: 25
8473262 TATAAACTTG
8473272 CATAACTTACATAATA-AC-A--TA
1 CATAACTTACATAATACACAACCTA
* *
8473293 -ATAACTTACATAATACATAGCCTA
1 CATAACTTACATAATACACAACCTA
*
8473317 CATAACTTACATAATACACAACTTA
1 CATAACTTACATAATACACAACCTA
*
8473342 CATAACTTAAATAA
1 CATAACTTACATAA
8473356 CTTACATAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
20 15 0.29
21 1 0.02
24 2 0.04
25 34 0.65
ACGTcount: A:0.50, C:0.20, G:0.01, T:0.29
Consensus pattern (25 bp):
CATAACTTACATAATACACAACCTA
Found at i:8473356 original size:34 final size:34
Alignment explanation
Indices: 8473318--8473492 Score: 127
Period size: 34 Copynumber: 4.7 Consensus size: 34
8473308 CATAGCCTAC
8473318 ATAACTTACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACACAACTTACATAACTTAA
*
8473352 ATAACTTACATAATACATAACTTTGGTA-ACTAACATTATA
1 ATAACTTACATAATACACAAC--T--TACA-TAAC-TTA-A
** * * *
8473392 CACGACTTACATAATACATTACTTACTTAACATACATAACCTAC
1 -ATAACTTAC---ATA-A-TAC--AC--AACTTACATAACTTAA
8473436 ATAACTTACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACACAACTTACATAACTTAA
*
8473470 ATAACTTACATAATACATAACTT
1 ATAACTTACATAATACACAACTT
8473493 TGATAACTAA
Statistics
Matches: 110, Mismatches: 13, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
34 55 0.50
36 3 0.03
37 1 0.01
38 9 0.08
39 4 0.04
40 4 0.04
41 7 0.06
43 7 0.06
44 3 0.03
45 3 0.03
46 9 0.08
47 1 0.01
48 1 0.01
50 3 0.03
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (34 bp):
ATAACTTACATAATACACAACTTACATAACTTAA
Found at i:8473362 original size:59 final size:59
Alignment explanation
Indices: 8473292--8473523 Score: 288
Period size: 59 Copynumber: 3.9 Consensus size: 59
8473282 ATAATAACAT
* *
8473292 AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* *** * *
8473351 AATAACTTACATAATACATAACTTTGGTAACTAACATTATACACGACTTACATAA--TA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* * * *
8473408 CATTACTTACTTAACATACATAACCTACATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACAT-A-ATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* ** *
8473469 AATAACTTACATAATACATAACTTTGATAACTAACATTATACACAACTTACATAA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAA
8473524 TACATTACTT
Statistics
Matches: 143, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
57 11 0.08
58 1 0.01
59 119 0.83
60 1 0.01
61 11 0.08
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.31
Consensus pattern (59 bp):
AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
Found at i:8473368 original size:25 final size:24
Alignment explanation
Indices: 8473272--8473374 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 24
8473262 TATAAACTTG
*
8473272 CATAACTTACATAATA-AC-A-TA
1 CATAACTTAAATAATACACAACTA
* * *
8473293 -ATAACTTACATAATACATAGCCTA
1 CATAACTTAAATAATACACA-ACTA
*
8473317 CATAACTTACATAATACACAACTTA
1 CATAACTTAAATAATACACAAC-TA
*
8473342 CATAACTTAAATAACTTACATAA-TA
1 CATAACTTAAATAA--TACACAACTA
8473367 CATAACTT
1 CATAACTT
8473375 TGGTAACTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
20 15 0.22
21 1 0.01
24 3 0.04
25 43 0.63
27 6 0.09
ACGTcount: A:0.49, C:0.20, G:0.01, T:0.30
Consensus pattern (24 bp):
CATAACTTAAATAATACACAACTA
Found at i:8473429 original size:25 final size:26
Alignment explanation
Indices: 8473399--8473557 Score: 113
Period size: 25 Copynumber: 6.3 Consensus size: 26
8473389 ATACACGACT
* *
8473399 TACATAA-TACATTACTTACTTAACA
1 TACATAACTACATAACTTACATAACA
8473424 TACATAACCTACATAACTTACAT-A-A
1 TACATAA-CTACATAACTTACATAACA
* * *
8473449 TACACAACTTACATAACTTAAATAACT
1 TACATAAC-TACATAACTTACATAACA
**
8473476 TACATAA-TACATAACTTTGATAAC-
1 TACATAACTACATAACTTACATAACA
* *
8473500 TAACATTA-TACACAACTTACAT-A-A
1 T-ACATAACTACATAACTTACATAACA
* *
8473524 TACATTACTTACATAGCTTACAT-A-A
1 TACATAAC-TACATAACTTACATAACA
8473549 TACATAACT
1 TACATAACT
8473558 TACCCGTGCA
Statistics
Matches: 110, Mismatches: 15, Indels: 19
0.76 0.10 0.13
Matches are distributed among these distances:
23 6 0.05
24 5 0.05
25 79 0.72
26 2 0.02
27 18 0.16
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (26 bp):
TACATAACTACATAACTTACATAACA
Found at i:8473441 original size:118 final size:118
Alignment explanation
Indices: 8473275--8473560 Score: 454
Period size: 118 Copynumber: 2.4 Consensus size: 118
8473265 AAACTTGCAT
*
8473275 AACTTACATAATAACATAATAACTTACAT-A-ATACATAGCCTACATAACTTACATAATACACAA
1 AACTTACATAAT-ACAT--T-ACTTACATAACATACATAACCTACATAACTTACATAATACACAA
*
8473338 CTTACATAACTTAAATAACTTACATAATACATAACTTTGGTAACTAACATTATACAC
62 CTTACATAACTTAAATAACTTACATAATACATAACTTTGATAACTAACATTATACAC
* *
8473395 GACTTACATAATACATTACTTACTTAACATACATAACCTACATAACTTACATAATACACAACTTA
1 AACTTACATAATACATTACTTACATAACATACATAACCTACATAACTTACATAATACACAACTTA
8473460 CATAACTTAAATAACTTACATAATACATAACTTTGATAACTAACATTATACAC
66 CATAACTTAAATAACTTACATAATACATAACTTTGATAACTAACATTATACAC
* *
8473513 AACTTACATAATACATTACTTACATAGCTTACATAA--TACATAACTTAC
1 AACTTACATAATACATTACTTACATAACATACATAACCTACATAACTTAC
8473561 CCGTGCAATT
Statistics
Matches: 156, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
116 19 0.12
117 2 0.01
118 120 0.77
119 4 0.03
120 11 0.07
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (118 bp):
AACTTACATAATACATTACTTACATAACATACATAACCTACATAACTTACATAATACACAACTTA
CATAACTTAAATAACTTACATAATACATAACTTTGATAACTAACATTATACAC
Found at i:8473558 original size:25 final size:25
Alignment explanation
Indices: 8473423--8473560 Score: 131
Period size: 25 Copynumber: 5.5 Consensus size: 25
8473413 CTTACTTAAC
*
8473423 ATACATAACCTACATAACTTACATA
1 ATACATAACTTACATAACTTACATA
* *
8473448 ATACACAACTTACATAACTTAAATA
1 ATACATAACTTACATAACTTACATA
**
8473473 ACTTACATAA--TACATAACTTTGATA
1 A--TACATAACTTACATAACTTACATA
* *
8473498 ACTAACATTA--TACACAACTTACATA
1 A-T-ACATAACTTACATAACTTACATA
* *
8473523 ATACATTACTTACATAGCTTACATA
1 ATACATAACTTACATAACTTACATA
8473548 ATACATAACTTAC
1 ATACATAACTTAC
8473561 CCGTGCAATT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
23 6 0.06
24 2 0.02
25 80 0.85
27 6 0.06
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.31
Consensus pattern (25 bp):
ATACATAACTTACATAACTTACATA
Found at i:8478648 original size:41 final size:41
Alignment explanation
Indices: 8478513--8478719 Score: 220
Period size: 42 Copynumber: 5.0 Consensus size: 41
8478503 GTTTGTGAAA
* *
8478513 TAAGCGCCGCTAAAGAACACT-ACTATTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATTTTTAGCGGCGTTTTT--CC
* * * *
8478556 -AAGCGCCGTTATAGAACATTACTTTTAGCGGCGTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATTTTTAGCGGCG--TTTTTCC
* *
8478598 TAAGCGCCGCTAAAAAACATGATTTTTAGCGGAGTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATTTTTAGCGGCGTTTTTCC
* ** *
8478639 TAAGCGCCGCTAAAGAACATGATTTGTAATGGCGTTTTTTCA
1 TAAGCGCCGCTAAAGAACATGATTTTTAGCGGCG-TTTTTCC
* *
8478681 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTT
1 TAAGCGCCGCTAAAGAACATGATTTTTAGCGGCGTTTTT
8478720 TTCTATAAGC
Statistics
Matches: 139, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
41 42 0.30
42 65 0.47
43 27 0.19
44 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (41 bp):
TAAGCGCCGCTAAAGAACATGATTTTTAGCGGCGTTTTTCC
Found at i:8481938 original size:25 final size:25
Alignment explanation
Indices: 8481910--8481978 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 25
8481900 CCATATATAT
* *
8481910 GGCTCTTCGGAGTTTTCCGATTAAA
1 GGCTCTTCGGAGCTTCCCGATTAAA
* *
8481935 GGCTCTTTCATGAGCTTCCCGATTAAC
1 GGCTC-TTC-GGAGCTTCCCGATTAAA
8481962 GGCTCTTCGGAGCTTCC
1 GGCTCTTCGGAGCTTCC
8481979 TCATATTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 13 0.35
26 6 0.16
27 18 0.49
ACGTcount: A:0.16, C:0.28, G:0.23, T:0.33
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCCGATTAAA
Found at i:8484077 original size:38 final size:41
Alignment explanation
Indices: 8484027--8484115 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 41
8484017 TAAGTGTATT
* *
8484027 TTATTATAAAACTCAAA-GTTAA-AATATATATTATA-ATA
1 TTATAATAAAACTCAAATATTAATAATATATATTATATATA
* *
8484065 TTATAATAAAACTTAAATATTAATTATATATATTATATTATA
1 TTATAATAAAACTCAAATATTAATAATATATATTATA-TATA
*
8484107 TTAAAATAA
1 TTATAATAA
8484116 TTAAGAAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 15 0.36
39 4 0.10
40 12 0.29
42 11 0.26
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (41 bp):
TTATAATAAAACTCAAATATTAATAATATATATTATATATA
Found at i:8484139 original size:12 final size:12
Alignment explanation
Indices: 8484118--8484156 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8484108 TAAAATAATT
*
8484118 AAGAAAGAGAAA
1 AAGAAGGAGAAA
8484130 AAGAAGGAGAAA
1 AAGAAGGAGAAA
*
8484142 AAGAAGGAGAGA
1 AAGAAGGAGAAA
8484154 AAG
1 AAG
8484157 GAAAAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (12 bp):
AAGAAGGAGAAA
Found at i:8484151 original size:24 final size:23
Alignment explanation
Indices: 8484122--8484186 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
8484112 ATAATTAAGA
8484122 AAGAGAAAAAGAAGGAGAAAAAG
1 AAGAGAAAAAGAAGGAGAAAAAG
* *
8484145 AAG-GAGAGA-AAGGA-AAAAA-
1 AAGAGAAAAAGAAGGAGAAAAAG
8484164 AAGAGAAAGAAAGAAGGAGAAAA
1 AAGAG-AA-AAAGAAGGAGAAAA
8484187 GTTAGGGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
19 3 0.09
20 6 0.18
21 6 0.18
22 6 0.18
23 8 0.24
24 4 0.12
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (23 bp):
AAGAGAAAAAGAAGGAGAAAAAG
Found at i:8484174 original size:20 final size:21
Alignment explanation
Indices: 8484121--8484176 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
8484111 AATAATTAAG
*
8484121 AAAGAGAAAAAGAAGGAGAAAA
1 AAAGAGAAAGA-AAGGAGAAAA
*
8484143 AGAAG-GAGAGAAAGGA-AAAA
1 A-AAGAGAAAGAAAGGAGAAAA
8484163 AAAGAGAAAGAAAG
1 AAAGAGAAAGAAAG
8484177 AAGGAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.10
20 13 0.45
21 5 0.17
22 5 0.17
23 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AAAGAGAAAGAAAGGAGAAAA
Found at i:8485088 original size:41 final size:40
Alignment explanation
Indices: 8485037--8485168 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 40
8485027 CTTCGAGTCA
*
8485037 ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAACT-G
* * *
8485078 ATGACG-CACTGGGTGCCAATTTA-T--TTCGGTTTAGCTG
1 ATGA-GACACTGGGTGTCAATTTATTACTTCGGATTAACTG
* *
8485115 ATGAGACACTGGGTTTCAATTTATTACTT-GGAATTATCTG
1 ATGAGACACTGGGTGTCAATTTATTACTTCGG-ATTAACTG
**
8485155 ATGAGGTACTGGGT
1 ATGAGACACTGGGT
8485169 ACCAAACTAG
Statistics
Matches: 75, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
36 1 0.01
37 20 0.27
38 10 0.13
39 2 0.03
40 21 0.28
41 20 0.27
42 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAACTG
Found at i:8485127 original size:37 final size:38
Alignment explanation
Indices: 8485037--8485139 Score: 111
Period size: 37 Copynumber: 2.7 Consensus size: 38
8485027 CTTCGAGTCA
*
8485037 ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAATTTA-T--TTCGGATTAACTCG
* * *
8485078 ATGACG-CACTGGGTGCCAATTTATTTCGGTTTAGCT-G
1 ATGA-GACACTGGGTGTCAATTTATTTCGGATTAACTCG
*
8485115 ATGAGACACTGGGTTTCAATTTATT
1 ATGAGACACTGGGTGTCAATTTATT
8485140 ACTTGGAATT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
36 1 0.02
37 22 0.41
38 9 0.17
40 1 0.02
41 20 0.37
42 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (38 bp):
ATGAGACACTGGGTGTCAATTTATTTCGGATTAACTCG
Found at i:8485359 original size:21 final size:22
Alignment explanation
Indices: 8485334--8485376 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8485324 AGCTATTTGT
*
8485334 ATAGCAAGT-ATGAGATTTGAA
1 ATAGCAAGTGATGAGAATTGAA
8485355 ATAGCAAGTGATGAGAATTGAA
1 ATAGCAAGTGATGAGAATTGAA
8485377 TATGTTATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.44, C:0.05, G:0.26, T:0.26
Consensus pattern (22 bp):
ATAGCAAGTGATGAGAATTGAA
Found at i:8491616 original size:489 final size:489
Alignment explanation
Indices: 8490698--8491674 Score: 1891
Period size: 489 Copynumber: 2.0 Consensus size: 489
8490688 TTCTAACTCC
8490698 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
1 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
*
8490763 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGTGTTAA
66 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
8490828 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
131 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
*
8490893 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAGCAACAATTTATATGCAACCAGCCCGAT
196 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
*
8490958 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
261 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTAA
8491023 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
326 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
8491088 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
391 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
*
8491153 ACTTTTTGTTCAGTCTCTTTAACCAAATCGACCT
456 ACTTTTTGTTCACTCTCTTTAACCAAATCGACCT
*
8491187 CAAGTTGCTTCTTCAACTCTGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
1 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
8491252 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
66 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
*
8491317 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACG
131 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
8491382 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
196 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
8491447 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTAA
261 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTAA
8491512 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
326 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
*
8491577 CTTTTCAAATCCGCATAGGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
391 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
8491642 ACTTTTTGTTCACTCTCTTTAACCAAATCGACC
456 ACTTTTTGTTCACTCTCTTTAACCAAATCGACC
8491675 CCGTGTATCT
Statistics
Matches: 481, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
489 481 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (489 bp):
CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTAA
GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
ACTTTTTGTTCACTCTCTTTAACCAAATCGACCT
Found at i:8497816 original size:43 final size:43
Alignment explanation
Indices: 8497728--8497851 Score: 110
Period size: 43 Copynumber: 2.9 Consensus size: 43
8497718 AGCTCGTACA
* * * * ***
8497728 ATGCCAACGTCCCA-AACGTGGTCTTACATGTAATCACATACCG
1 ATGCCGACGTCCCAGAA-GTGGTCTTACACGAAAACACAGGTCG
* *
8497771 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGTAAACACAGGTCG
1 ATGCCGAC-GTCCCAGA-AGTGGTCTTACACGAAAACACAGGTCG
*
8497814 ATGCCGACGTCCCAGATGTGGTCTTACACGAAAACACA
1 ATGCCGACGTCCCAGAAGTGGTCTTACACGAAAACACA
8497852 TATCGGAGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
42 3 0.04
43 59 0.88
44 4 0.06
45 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (43 bp):
ATGCCGACGTCCCAGAAGTGGTCTTACACGAAAACACAGGTCG
Done.