Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 33 of 185
Found at i:9090321 original size:28 final size:28
Alignment explanation
Indices: 9090255--9090309 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
9090245 AATATATAGT
* *
9090255 ACTAATAATTATAAATTTTAGTGTTTTC
1 ACTAATATTTTTAAATTTTAGTGTTTTC
9090283 ACTAATATTTTTAAATTTTAGTGTTTT
1 ACTAATATTTTTAAATTTTAGTGTTTT
9090310 TATTTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (28 bp):
ACTAATATTTTTAAATTTTAGTGTTTTC
Found at i:9090339 original size:20 final size:21
Alignment explanation
Indices: 9090291--9090339 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
9090281 TCACTAATAT
*
9090291 TTTTAAATTTTAGTGTTTTTA
1 TTTTAATTTTTAGTGTTTTTA
* *
9090312 -TTTCATTTTTA-TTTTTTTA
1 TTTTAATTTTTAGTGTTTTTA
9090331 TTTTAATTT
1 TTTTAATTT
9090340 AATTCCATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTAATTTTTAGTGTTTTTA
Found at i:9091875 original size:386 final size:380
Alignment explanation
Indices: 9091049--9091970 Score: 1387
Period size: 386 Copynumber: 2.4 Consensus size: 380
9091039 TTGGTGCTCT
* * * *
9091049 CCTAAACCCTAAATTCCTAAGTCTTAACCACTAACATCTAACCCCTAACCCCTAAATCTTAAATC
1 CCTAAACACAAAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAACCCCTAAACCTTAAATC
* *
9091114 TCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTAT
66 CCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTAC
* * *
9091179 TCCCTAAAAATTAAAAAGCATTAATTAATTGTATAAAATTCAAAATCTCAGTTAAACCTTAATCT
131 TCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAAAAGCTCAATTAAACCTTAATCT
* *
9091244 TATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTATTCTATCTATTATATA
196 TATTAAACACGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTACTCTATCTATTATATA
* *
9091309 TCTCTCTCAAGGCATAATTTAAACCCTAATTTATACATCTTTTACAATTACATAAGAACATATTT
261 TCTCTCTCAAGGCATAATTTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATATTT
** * *
9091374 AAAATATAAATAAAAAATTAATCTAAACCCAAAATTGTAACCAGACCCTTGAAAC
326 AAAATATAAATAAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAAAAC
*
9091429 CCTAAACACAAAATCCCTAAGTCTTAACAACTAACATCTAACCCCTAAACCCCTCCCCTAAACCT
1 CCTAAACACAAAATCCCTAAGTCTTAACCACTAACATCTAACCCCT-AA-----CCCCTAAACCT
* *
9091494 TAAATCCCGGCCAACACTTAGTTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATA
60 TAAATCCCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATA
9091559 TAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAAAAGCTCAATTAAACCT
125 TAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAAAAGCTCAATTAAACCT
**
9091624 TAATCTTATTAAACACGCCTAAATTAACCATTGAAGGGATATAAATAATTTTCCGTACTCTATCT
190 TAATCTTATTAAACACGCCTAAATTAACCATTGAAGGGATATAAAT-A-TTTAAGTACTCTATCT
9091689 ATTATATATACCTCTCTCAAGGCATAATTAATTAAACCCTAAATTATACATATTTTACAATTACA
253 ATTATATAT--CTCTCTCAAGGCATAA-T--TTAAACCCTAAATTATACATATTTTACAATTACA
* *
9091754 TAAGAACATATTTAAATTATAAATAAAAAATTAATCTAAA-CCAAAACCGTAACCCGACCCCTAA
313 TAAGAACATATTTAAAATATAAATAAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAA
9091818 AAC
378 AAC
* *
9091821 CCTAAACACAAAATCCCTAAGTCTTAACCACTAACATCTAACTCCTAACCCCTAAGCCTTAAATC
1 CCTAAACACAAAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAACCCCTAAACCTTAAATC
** * * * *
9091886 CCTACCAACCCTTAATTAAGCAAAACCCCTAATCTATAATCCGTATATAAATCCATATATATATA
66 CCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCC----CTAAATCCATATATATATA
*
9091951 GTACTCCCTAAACCTTAAAA
127 GTACTCCCTAAACATTAAAA
9091971 TTATATGAAC
Statistics
Matches: 489, Mismatches: 36, Indels: 24
0.89 0.07 0.04
Matches are distributed among these distances:
380 42 0.09
381 2 0.00
386 229 0.47
387 1 0.00
388 22 0.04
390 53 0.11
391 3 0.01
392 66 0.13
393 71 0.15
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.30
Consensus pattern (380 bp):
CCTAAACACAAAATCCCTAAGTCTTAACCACTAACATCTAACCCCTAACCCCTAAACCTTAAATC
CCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCCTAAATCCATATATATATAGTAC
TCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAAAAGCTCAATTAAACCTTAATCT
TATTAAACACGCCTAAATTAACCATTGAAGGGATATAAATATTTAAGTACTCTATCTATTATATA
TCTCTCTCAAGGCATAATTTAAACCCTAAATTATACATATTTTACAATTACATAAGAACATATTT
AAAATATAAATAAAAAATTAATCTAAACCCAAAACCGTAACCAGACCCCTAAAAC
Found at i:9092746 original size:112 final size:113
Alignment explanation
Indices: 9092510--9092853 Score: 448
Period size: 111 Copynumber: 3.1 Consensus size: 113
9092500 ACTAAACGAC
* * * *
9092510 GTATTTTATTTTTTGCGGCGTTTTTCTAGAAAACGCCACTAAAAA-A-AGACCATTAGCGGCACT
1 GTATTTTATTTTTTGCGGCGTTTTCCT-GAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCA
* * * *
9092573 ATACCAAAAATGCCACT-ACGGCCACCGAAGGCCACTAAACGACGCCGTT
65 AGACCAAAAACGCCACTAAC-GCCACTGAAGGCCACTAAACGACACCGTT
*
9092622 GTATTTTATTTTTTGCGGTGTTTATCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCA
1 GTATTTTATTTTTTGCGGCGTTT-TCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCA
*
9092687 AGACCAAAAACGCCACTAACGCCACTGTA-GCCACTAAACGACACCGTT
65 AGACCAAAAACGCCACTAACGCCACTGAAGGCCACTAAACGACACCGTT
* * *
9092735 GT-GTTT-TTTTTTGCGGCGTTCTTCCTAAAAACGCCGGTAAAAACACAGACCATTAGCGGCGCA
1 GTATTTTATTTTTTGCGGCGTT-TTCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCA
* * * * *
9092798 AGACAAAAAACGACACTAAGGCCACTGAAGGCCACTAAACCACACCATT
65 AGACCAAAAACGCCACTAACGCCACTGAAGGCCACTAAACGACACCGTT
9092847 GTATTTT
1 GTATTTT
9092854 GCTAAAAACA
Statistics
Matches: 204, Mismatches: 21, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
111 77 0.38
112 61 0.30
113 27 0.13
114 37 0.18
115 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (113 bp):
GTATTTTATTTTTTGCGGCGTTTTCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCAA
GACCAAAAACGCCACTAACGCCACTGAAGGCCACTAAACGACACCGTT
Found at i:9092877 original size:84 final size:84
Alignment explanation
Indices: 9092772--9093039 Score: 437
Period size: 84 Copynumber: 3.2 Consensus size: 84
9092762 AAAACGCCGG
* * *
9092772 TAAAAACACAGACCATTAGCGGCGCAAGACAAAAAACGACACTAAGGCCACTGAAGGCCACTAAA
1 TAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAGGCCACCGAAGGCCACTAAA
* * *
9092837 CCACACCATTGTATTTTGC
66 CGACGCCGTTGTATTTTGC
*
9092856 TAAAAACACAGACCATTAGCGGCGCTAGACCAAAAACGCCACTAAGGCCACCGAAGGCCACTAAA
1 TAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAGGCCACCGAAGGCCACTAAA
9092921 CGACGCCGTTGTATTTTGC
66 CGACGCCGTTGTATTTTGC
* * *
9092940 TAAAAACACAAATCATTAGCGGCGCTAGACAAAAAACGCCACTAAAGCCACCGAAGGCCACTAAA
1 TAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAGGCCACCGAAGGCCACTAAA
9093005 CGACGCCGTTGTATTTTGC
66 CGACGCCGTTGTATTTTGC
*
9093024 TAAAAACACATACCAT
1 TAAAAACACAGACCAT
9093040 ATTGGTGTTC
Statistics
Matches: 171, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 171 1.00
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.16
Consensus pattern (84 bp):
TAAAAACACAGACCATTAGCGGCGCTAGACAAAAAACGCCACTAAGGCCACCGAAGGCCACTAAA
CGACGCCGTTGTATTTTGC
Found at i:9098866 original size:18 final size:19
Alignment explanation
Indices: 9098839--9098883 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
9098829 TGTCACATCA
*
9098839 ATAAATAAATT-AAAATTT
1 ATAAAAAAATTCAAAATTT
9098857 ATAAAAAAATTCAAAATTT
1 ATAAAAAAATTCAAAATTT
9098876 A-AAAAAAA
1 ATAAAAAAA
9098884 ACCTATAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAAAAAATTCAAAATTT
Found at i:9098884 original size:19 final size:18
Alignment explanation
Indices: 9098845--9098884 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
9098835 ATCAATAAAT
*
9098845 AAATTAAAATTTATAAAA
1 AAATTAAAATTTAAAAAA
9098863 AAATTCAAAATTTAAAAAA
1 AAATT-AAAATTTAAAAAA
9098882 AAA
1 AAA
9098885 CCTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTAAAATTTAAAAAA
Found at i:9109058 original size:24 final size:24
Alignment explanation
Indices: 9109026--9109075 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9109016 GAAAAGACCC
9109026 CGTAGTTGATGCTGGGGAGGATCA
1 CGTAGTTGATGCTGGGGAGGATCA
9109050 CGTAGTTGATGCTGGGGAGGATCA
1 CGTAGTTGATGCTGGGGAGGATCA
9109074 CG
1 CG
9109076 ATGACCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.14, G:0.42, T:0.24
Consensus pattern (24 bp):
CGTAGTTGATGCTGGGGAGGATCA
Found at i:9135827 original size:48 final size:47
Alignment explanation
Indices: 9135701--9135835 Score: 161
Period size: 47 Copynumber: 2.9 Consensus size: 47
9135691 TAACTGTGAT
* * *
9135701 TATGTGGCCGTTATC-AGCAATTATGTGGTGGCTTGTCCACGATGTGC
1 TATGTGACCATTATCGA-CAATTATGTGGTGGCTTGTCCACGATATGC
*
9135748 TATGTGGCCATTATCGACAATTATGTGGTGGCTCT-TCCACGATAT-C
1 TATGTGACCATTATCGACAATTATGTGGTGGCT-TGTCCACGATATGC
9135794 TTATGTGACCATTTATCGAC-ATCTATGTGGTGGCTTGTCCAC
1 -TATGTGACCA-TTATCGACAAT-TATGTGGTGGCTTGTCCAC
9135836 AAATGGTGTG
Statistics
Matches: 79, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
46 1 0.01
47 51 0.65
48 27 0.34
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (47 bp):
TATGTGACCATTATCGACAATTATGTGGTGGCTTGTCCACGATATGC
Found at i:9148821 original size:21 final size:21
Alignment explanation
Indices: 9148795--9148845 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
9148785 ACATACTTAA
*
9148795 AATAAGAATAATAACAAA-AGT
1 AATAAGAATAATAA-AAAGAAT
*
9148816 AATAAGAAGAATAAAAAGAAT
1 AATAAGAATAATAAAAAGAAT
9148837 AATAA-AATA
1 AATAAGAATA
9148846 TATAGTAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.18
Consensus pattern (21 bp):
AATAAGAATAATAAAAAGAAT
Found at i:9149096 original size:31 final size:28
Alignment explanation
Indices: 9149019--9149076 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
9149009 TTAAATTAAG
*
9149019 AAATAAACTAAAGAAAATAATAATAATAA
1 AAATAAAAT-AAGAAAATAATAATAATAA
* *
9149048 ATATAAAATAACAAAATAATAATAATAA
1 AAATAAAATAAGAAAATAATAATAATAA
9149076 A
1 A
9149077 GAACTAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (28 bp):
AAATAAAATAAGAAAATAATAATAATAA
Found at i:9156936 original size:3 final size:3
Alignment explanation
Indices: 9156930--9156972 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
9156920 CATCATCATC
**
9156930 ATT ATT ATT ATT ATT ATT ACC ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9156973 AATTTTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:9161295 original size:17 final size:18
Alignment explanation
Indices: 9161261--9161306 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
9161251 CCGTTATGTC
9161261 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
9161276 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
9161293 CGCGACCGCGACCG
1 CGCGACCGCGACCG
9161307 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:9162353 original size:14 final size:14
Alignment explanation
Indices: 9162334--9162364 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
9162324 TGAGGAGCGA
9162334 TAGAGATGAGGGAG
1 TAGAGATGAGGGAG
9162348 TAGAGATGAGGGAG
1 TAGAGATGAGGGAG
9162362 TAG
1 TAG
9162365 GGGATGGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.16
Consensus pattern (14 bp):
TAGAGATGAGGGAG
Found at i:9162582 original size:24 final size:24
Alignment explanation
Indices: 9162536--9162582 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
9162526 TAATTATCTT
* * * *
9162536 AATTAGAGTGATTAAATTGAAAAA
1 AATTAGAATGACTAAAATAAAAAA
9162560 AATTAGAATGACTAAAATAAAAA
1 AATTAGAATGACTAAAATAAAAA
9162583 TAACGCTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.26
Consensus pattern (24 bp):
AATTAGAATGACTAAAATAAAAAA
Found at i:9164771 original size:17 final size:16
Alignment explanation
Indices: 9164740--9164781 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
9164730 GAATTTAGAA
9164740 GAATTTTTGAATTAGT
1 GAATTTTTGAATTAGT
*
9164756 GAATTTTGTGATTTAGT
1 GAATTTT-TGAATTAGT
9164773 GAATTTTTG
1 GAATTTTTG
9164782 CGATTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (16 bp):
GAATTTTTGAATTAGT
Found at i:9166102 original size:45 final size:46
Alignment explanation
Indices: 9166013--9166196 Score: 307
Period size: 46 Copynumber: 4.0 Consensus size: 46
9166003 CATGGCAAAG
*
9166013 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
9166059 TGTGAAAAGTAGGTATGGTGTTTC-GTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
*
9166104 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
** * *
9166150 TGTGAAAAGTAGGTATGGTAATTCCGTGAAGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
9166196 T
1 T
9166197 ATAGCAATGT
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
45 44 0.34
46 87 0.66
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
Found at i:9169101 original size:36 final size:36
Alignment explanation
Indices: 9169060--9169168 Score: 191
Period size: 36 Copynumber: 3.0 Consensus size: 36
9169050 CTAAGGCTAA
* *
9169060 CACTTATCACTTTGTCACTTGATCAAATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
9169096 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
*
9169132 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
9169168 C
1 C
9169169 TAAGGCTAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 70 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
Found at i:9171822 original size:287 final size:286
Alignment explanation
Indices: 9171306--9171874 Score: 1084
Period size: 287 Copynumber: 2.0 Consensus size: 286
9171296 ATAAATATTT
*
9171306 ATAAAAATATTTATGGCTCGGTTTAAAATCCCCGAGGTCTTGATACCTCATTTCGATTCTAATTG
1 ATAAAAATATTTATGGCTCGGTTTAAAATCCCCGAGGTCTTGATACCTCATTTCGATTCTAATTA
9171371 TTTTAATATTTATTTCTAGTGCACTATTCACTATTTCAAAAATTTTCCTAACTTCACATTTAACT
66 TTTTAATATTTATTTCTAGTGCACTATTCACTATTTCAAAAATTTTCCTAACTTCACATTTAACT
*
9171436 TATACTTACTAAATTAATAATACTTTCTACCCATTTGTCGAATTTAGTTATCTCAAATCACCGTT
131 TATACTTACTAAATTAATAATACTTTCTACCCATTTGTCGAATTTAGTGATCTCAAATCACCGTT
9171501 CCGACACCTCTGAAAATTCAGGCCATTACATTTTTTTTTCTCGTCGGATTTGTGGTCCCGAAACC
196 CCGACACCTCTGAAAATTCAGGCCATTACA-TTTTTTTTCTCGTCGGATTTGTGGTCCCGAAACC
9171566 ACTGTTCCGACTAGGCCTAAAATTGGG
260 ACTGTTCCGACTAGGCCTAAAATTGGG
*
9171593 ATAAAAATATTTATGGCTCGGTTTAAAATTCCCGAGGTCTTGATACCTCATTTCGATTCTAATTA
1 ATAAAAATATTTATGGCTCGGTTTAAAATCCCCGAGGTCTTGATACCTCATTTCGATTCTAATTA
9171658 TTTTAATATTTATTTCTAGTGCACTATTCACTATTTCAAAAATTTTCCTAACTTCACATTTAACT
66 TTTTAATATTTATTTCTAGTGCACTATTCACTATTTCAAAAATTTTCCTAACTTCACATTTAACT
*
9171723 TATACTTACTAAATTAATAATATTTTCTACCCATTTGTCGAATTTAGTGATCTCAAATCACCGTT
131 TATACTTACTAAATTAATAATACTTTCTACCCATTTGTCGAATTTAGTGATCTCAAATCACCGTT
*
9171788 TCGACACCTCTGAAAATTCAGGCCATTACATTTTTTTTCTCGTCGGATTTGTGGTCCCGAAACCA
196 CCGACACCTCTGAAAATTCAGGCCATTACATTTTTTTTCTCGTCGGATTTGTGGTCCCGAAACCA
9171853 CTGTTCCGACTAGGCCTAAAAT
261 CTGTTCCGACTAGGCCTAAAAT
9171875 CGGGCTATTA
Statistics
Matches: 277, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
286 57 0.21
287 220 0.79
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (286 bp):
ATAAAAATATTTATGGCTCGGTTTAAAATCCCCGAGGTCTTGATACCTCATTTCGATTCTAATTA
TTTTAATATTTATTTCTAGTGCACTATTCACTATTTCAAAAATTTTCCTAACTTCACATTTAACT
TATACTTACTAAATTAATAATACTTTCTACCCATTTGTCGAATTTAGTGATCTCAAATCACCGTT
CCGACACCTCTGAAAATTCAGGCCATTACATTTTTTTTCTCGTCGGATTTGTGGTCCCGAAACCA
CTGTTCCGACTAGGCCTAAAATTGGG
Found at i:9174973 original size:21 final size:21
Alignment explanation
Indices: 9174932--9174974 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
9174922 AATAAAGTAG
*
9174932 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
9174953 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
9174974 A
1 A
9174975 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:9175016 original size:17 final size:18
Alignment explanation
Indices: 9174991--9175036 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
9174981 TATAAGAATA
*
9174991 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
9175008 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
9175026 ATTAAATTATA
1 ATTAAATTATA
9175037 TTTAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:9175060 original size:66 final size:66
Alignment explanation
Indices: 9174990--9175184 Score: 184
Period size: 66 Copynumber: 3.1 Consensus size: 66
9174980 ATATAAGAAT
9174990 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
1 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
9175055 A
66 A
* * * * * * * *
9175056 AATTATATTTTATAGTATTA-TATATTAT-GA-TTTTAGTAAATTCATA--TAA-GA--A-TA-T
1 AATTATA-TTAAGAATTTTATTAAATTATATATTTTTATTAAATT-ATATTTAATAATTATTATT
9175111 TT-
64 TTA
* *
9175113 -A--ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTTATTATTATTATTTT
1 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
9175175 A
66 A
9175176 AATTATATT
1 AATTATATT
9175185 TTATAGTATT
Statistics
Matches: 96, Mismatches: 17, Indels: 32
0.66 0.12 0.22
Matches are distributed among these distances:
53 8 0.08
54 10 0.10
55 4 0.04
56 12 0.12
57 2 0.02
58 4 0.04
59 2 0.02
60 2 0.02
61 2 0.02
62 4 0.04
63 3 0.03
64 12 0.12
65 4 0.04
66 19 0.20
67 8 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (66 bp):
AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
A
Found at i:9175076 original size:59 final size:59
Alignment explanation
Indices: 9175013--9175201 Score: 195
Period size: 59 Copynumber: 3.2 Consensus size: 59
9175003 ATTTTATTAA
9175013 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
* * ** * * * * * * *
9175072 ATTATATATTATGATTTTAGTAAATTCATATAA-GAATA-TTTAATATTAAGAATTTTATTA-A
1 ATTATATATTTTTATTAAATTATATTTA-ATAATTATTATTTTAA-ATT-A-TATTTTA-TAGT
* *
9175133 ATTATATATTTTTATTAAATTATATTTTATTATTATTATTTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
9175192 ATTATATATT
1 ATTATATATT
9175202 ATGATTTTAG
Statistics
Matches: 98, Mismatches: 24, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
58 7 0.07
59 43 0.44
60 9 0.09
61 32 0.33
62 7 0.07
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (59 bp):
ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
Found at i:9175145 original size:18 final size:17
Alignment explanation
Indices: 9175124--9175167 Score: 70
Period size: 18 Copynumber: 2.5 Consensus size: 17
9175114 ATATTAAGAA
9175124 TTTTATTAAATTATATAT
1 TTTTATTAAATTATAT-T
9175142 TTTTATTAAATTATATT
1 TTTTATTAAATTATATT
9175159 TTATTATTA
1 TT-TTATTA
9175168 TTATTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATTAAATTATATT
Found at i:9175170 original size:21 final size:18
Alignment explanation
Indices: 9175006--9175167 Score: 69
Period size: 18 Copynumber: 9.3 Consensus size: 18
9174996 ATTAAGAATT
*
9175006 TTATTAAATTATATATTT
1 TTATTAAATTATATATTA
9175024 TTATTAAATTATAT-TTA
1 TTATTAAATTATATATTA
9175041 --A-T-AATTAT-TATT-
1 TTATTAAATTATATATTA
* * *
9175053 TTAAATTATATTTTATAGTA
1 TT--ATTAAATTATATATTA
* *
9175073 TTA-TATATTAT-GATT-
1 TTATTAAATTATATATTA
* **
9175088 TTAGTAAATTCATATAAGA
1 TTATTAAATT-ATATATTA
* *
9175107 ATATTTAATATTA-AGAATT-
1 TTA-TTAA-ATTATA-TATTA
*
9175126 TTATTAAATTATATATTT
1 TTATTAAATTATATATTA
*
9175144 TTATTAAATTATATTTTA
1 TTATTAAATTATATATTA
9175162 TTATTA
1 TTATTA
9175168 TTATTTTAAA
Statistics
Matches: 106, Mismatches: 20, Indels: 36
0.65 0.12 0.22
Matches are distributed among these distances:
12 1 0.01
13 8 0.08
14 1 0.01
15 4 0.04
16 8 0.08
17 19 0.18
18 47 0.44
19 8 0.08
20 7 0.07
21 3 0.03
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (18 bp):
TTATTAAATTATATATTA
Found at i:9175184 original size:21 final size:20
Alignment explanation
Indices: 9175123--9175188 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 20
9175113 AATATTAAGA
*
9175123 ATTTTATTAAATTATA-TAT
1 ATTTTATTAAATTAAATTAT
* *
9175142 -TTTTATTAAATTATATTTT
1 ATTTTATTAAATTAAATTAT
**
9175161 ATTATTATTATTTTAAATTAT
1 ATT-TTATTAAATTAAATTAT
9175182 ATTTTAT
1 ATTTTAT
9175189 AGTATTATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
18 15 0.38
19 2 0.05
20 6 0.15
21 16 0.41
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTATTAAATTAAATTAT
Found at i:9175259 original size:59 final size:58
Alignment explanation
Indices: 9174957--9175260 Score: 234
Period size: 64 Copynumber: 5.1 Consensus size: 58
9174947 TATAGTATTA
*
9174957 TATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAATTCATATAAGAATATTTATATTAAGAATTTTATTAAAT
* * * * *
9175015 TATA-TAT--TTTTATTAAATT-ATATTTAATAAT-TATTATTTTAAATTATATTTTA-TAGTAT
1 TATATTATGATTTTAGTAAATTCATA--TAAGAATAT-TTATATT-AA-GA-ATTTTATTA--AA
9175074 T
58 T
9175075 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATTCATATAAGAATATTT-ATATTAAGAATTTTATTAAAT
* *** * * * *
9175135 TATA-TAT--TTTTATTAAATT-ATATTTTATTATTATTATTTTAAATTATATTTTA-TAGTATT
1 TATATTATGATTTTAGTAAATTCATATAAGAATA-T-TTATATT-AA-GA-ATTTTATTA--AAT
9175195 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATTCATATAAGAATATTT-ATATTAAGAATTTTATTAAAT
9175255 TATATT
1 TATATT
9175261 TCATTATTAT
Statistics
Matches: 189, Mismatches: 27, Indels: 59
0.69 0.10 0.21
Matches are distributed among these distances:
54 3 0.02
55 18 0.10
56 28 0.15
57 9 0.05
58 13 0.07
59 22 0.12
60 8 0.04
61 20 0.11
62 12 0.06
63 14 0.07
64 32 0.17
65 10 0.05
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (58 bp):
TATATTATGATTTTAGTAAATTCATATAAGAATATTTATATTAAGAATTTTATTAAAT
Found at i:9175259 original size:102 final size:102
Alignment explanation
Indices: 9175142--9175366 Score: 427
Period size: 102 Copynumber: 2.2 Consensus size: 102
9175132 AATTATATAT
9175142 TTTTATTAAATTATATTTTATTATTATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTTATTATTATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
9175207 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
*
9175244 TTTTATTAAATTATATTTCATTATTATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTTATTATTATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
9175309 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
66 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
9175346 TTTTATTAAA-TAT-TTTTATTA
1 TTTTATTAAATTATATTTTATTA
9175367 AATTATATTT
Statistics
Matches: 121, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
100 7 0.06
101 3 0.02
102 111 0.92
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (102 bp):
TTTTATTAAATTATATTTTATTATTATTATTTTAAATTATATTTTATAGTATTATATATTATGAT
TTTAGTAAATTCATATAAGAATATTTAATATTAAGAA
Found at i:9175269 original size:120 final size:120
Alignment explanation
Indices: 9174939--9175259 Score: 601
Period size: 120 Copynumber: 2.7 Consensus size: 120
9174929 TAGATTATAT
*
9174939 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
9175002 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
9175057 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
* *
9175122 AATTTTATTAAATTATATATTTTTATTAAATTATATTTTATTATTATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
9175177 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
9175242 AATTTTATTAAATTATAT
66 AATTTTATTAAATTATAT
9175260 TTCATTATTA
Statistics
Matches: 198, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
118 5 0.03
119 49 0.25
120 144 0.73
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (120 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
Found at i:9175621 original size:45 final size:44
Alignment explanation
Indices: 9175533--9175624 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
9175523 TTACAACATT
*
9175533 ATTCCATTCAACCAAACACAAGAATACTATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCC
*
9175577 ATTCCATTCAACCAAACA-ATTGAATTACTATTA-AGCCTCTATTCC
1 ATTCCATTCAACCAAACACA-AGAA-TACTATTACAG-CTCTATTCC
9175622 ATT
1 ATT
9175625 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
43 1 0.02
44 23 0.53
45 19 0.44
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAAGAATACTATTACAGCTCTATTCC
Found at i:9175632 original size:16 final size:16
Alignment explanation
Indices: 9175613--9175661 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
9175603 ACTATTAAGC
9175613 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
* *
9175629 CTCTATTCAATTACAC
1 CTCTATTCCATTACAG
*
9175645 CTTTATTCCATTACAG
1 CTCTATTCCATTACAG
9175661 C
1 C
9175662 GAACCAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.04, T:0.39
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:9186791 original size:6 final size:6
Alignment explanation
Indices: 9186780--9186805 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9186770 TTGAGTTGAG
9186780 TTCATC TTCATC TTCATC TTCATC TT
1 TTCATC TTCATC TTCATC TTCATC TT
9186806 TCTTACAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (6 bp):
TTCATC
Found at i:9189505 original size:3 final size:3
Alignment explanation
Indices: 9189497--9189602 Score: 70
Period size: 3 Copynumber: 33.3 Consensus size: 3
9189487 GTAAATAAAT
* * *
9189497 TTA TTA TTA TTA TTA TTA TTA TTA TTA CTC TTA TTTA TTTA TTTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA -TTA TTA
* * * * *
9189545 CTA TTA TTC GT- TTA TTAA TGTA TGA TTA TTTA TTA TTA TTC TTA GTTA
1 TTA TTA TTA TTA TTA TT-A T-TA TTA TTA -TTA TTA TTA TTA TTA -TTA
9189593 TTA TTA TTA T
1 TTA TTA TTA T
9189603 CACTATGTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
2 1 0.01
3 61 0.73
4 21 0.25
5 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:9189601 original size:29 final size:28
Alignment explanation
Indices: 9189500--9189602 Score: 81
Period size: 29 Copynumber: 3.6 Consensus size: 28
9189490 AATAAATTTA
*
9189500 TTATTATTATTATTA-TTATTATTACTC
1 TTATTATTATTATTATTTATTATTATTC
9189527 TTA-T-TTA-T-TTATTTACTACTATTATTC
1 TTATTATTATTATTATTTA-T--TATTATTC
*
9189554 GTTTATTAATGTATGATTATTTATTATTATTC
1 --TTATT-AT-TATTATTATTTATTATTATTC
9189586 TTAGTTATTATTATTAT
1 TTA-TTATTATTATTAT
9189603 CACTATGTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 24
0.69 0.03 0.28
Matches are distributed among these distances:
23 3 0.05
24 4 0.07
25 4 0.07
26 1 0.02
27 10 0.17
29 11 0.18
30 6 0.10
31 2 0.03
32 9 0.15
33 2 0.03
34 1 0.02
35 7 0.12
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (28 bp):
TTATTATTATTATTATTTATTATTATTC
Found at i:9189834 original size:22 final size:23
Alignment explanation
Indices: 9189809--9189854 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
9189799 TATATACCTA
9189809 TATACATACATATTT-TAATTTT
1 TATACATACATATTTCTAATTTT
* *
9189831 TATATATACATATTTCTATTTTT
1 TATACATACATATTTCTAATTTT
9189854 T
1 T
9189855 TTTCTTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (23 bp):
TATACATACATATTTCTAATTTT
Found at i:9192059 original size:17 final size:17
Alignment explanation
Indices: 9192037--9192072 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
9192027 TAGGAACATG
*
9192037 GCTAAGACAGTTGTAGT
1 GCTAAGACAATTGTAGT
9192054 GCTAAGACAATTGTAGT
1 GCTAAGACAATTGTAGT
9192071 GC
1 GC
9192073 GTTTCTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (17 bp):
GCTAAGACAATTGTAGT
Found at i:9192889 original size:30 final size:30
Alignment explanation
Indices: 9192855--9192920 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
9192845 GTTGTTTTTG
*
9192855 ATAAGGACACTGAATATTATCAAATGAAAA
1 ATAAGGAAACTGAATATTATCAAATGAAAA
* * *
9192885 ATAAGGAAATTGAATATTTTCAAATGAAAG
1 ATAAGGAAACTGAATATTATCAAATGAAAA
9192915 ATAAGG
1 ATAAGG
9192921 TGAATTTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.26
Consensus pattern (30 bp):
ATAAGGAAACTGAATATTATCAAATGAAAA
Found at i:9193580 original size:29 final size:29
Alignment explanation
Indices: 9193522--9193580 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
9193512 TCCACATTAA
* * * *
9193522 CATGAATTCTCAATGAACAAGTTTTTCAC
1 CATGAACTCTCAACGAACAAGTTCTCCAC
*
9193551 CATGAACTCTCAACGAATAAGTTCTCCAC
1 CATGAACTCTCAACGAACAAGTTCTCCAC
9193580 C
1 C
9193581 TCTTCCACGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (29 bp):
CATGAACTCTCAACGAACAAGTTCTCCAC
Found at i:9199900 original size:18 final size:18
Alignment explanation
Indices: 9199848--9199900 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
9199838 TGCAGTTGAA
*
9199848 ATAATTATTTGAAATACTT
1 ATAA-TATTTGAAATAATT
*
9199867 -TAA-ATAT-AAA-AATT
1 ATAATATTTGAAATAATT
9199881 ATAATATTTGAAATAATT
1 ATAATATTTGAAATAATT
9199899 AT
1 AT
9199901 TTTATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 9
0.69 0.08 0.23
Matches are distributed among these distances:
14 3 0.11
15 6 0.22
16 6 0.22
17 3 0.11
18 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (18 bp):
ATAATATTTGAAATAATT
Found at i:9204550 original size:9 final size:9
Alignment explanation
Indices: 9204526--9204559 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
9204516 TTAGTCTTAA
9204526 TTAAAATATT
1 TTAAAA-ATT
*
9204536 TTAAAAATC
1 TTAAAAATT
9204545 TTAAAAATT
1 TTAAAAATT
9204554 TTAAAA
1 TTAAAA
9204560 CTAAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
TTAAAAATT
Found at i:9204760 original size:37 final size:37
Alignment explanation
Indices: 9204719--9204791 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
9204709 AAAAATATTT
*
9204719 TTATATTTCTTTTGAAAACTTTTAAAT-TTTTTATAAA
1 TTATATTTATTTTGAAAA-TTTTAAATATTTTTATAAA
* * *
9204756 TTATATTTATTTTTATAATTTTTAATATTTTTATAA
1 TTATATTTATTTTGAAAATTTTAAATATTTTTATAA
9204792 TTAGGACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 7 0.23
37 24 0.77
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (37 bp):
TTATATTTATTTTGAAAATTTTAAATATTTTTATAAA
Found at i:9204768 original size:19 final size:18
Alignment explanation
Indices: 9204746--9204791 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
9204736 ACTTTTAAAT
*
9204746 TTTTTATAAATTATATTTA
1 TTTTTATAAATTATA-ATA
* *
9204765 TTTTTATAATTTTTAATA
1 TTTTTATAAATTATAATA
9204783 TTTTTATAA
1 TTTTTATAA
9204792 TTAGGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATAAATTATAATA
Found at i:9204775 original size:18 final size:18
Alignment explanation
Indices: 9204746--9204794 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
9204736 ACTTTTAAAT
9204746 TTTTTATAAATTATATT-TA
1 TTTTTAT-AATTAT-TTATA
9204765 TTTTTATAATT-TTTAATA
1 TTTTTATAATTATTT-ATA
9204783 TTTTTATAATTA
1 TTTTTATAATTA
9204795 GGACTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.07
17 1 0.04
18 17 0.63
19 7 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATAATTATTTATA
Found at i:9205545 original size:31 final size:29
Alignment explanation
Indices: 9205478--9205546 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
9205468 TTAGGTTACG
* *
9205478 TTTTAGTCACTTATGTTTGAAGTGTTACG
1 TTTTAGTCACTTATGTTTGAAGTGTAACA
*
9205507 TTTTAGTCACTTATGTTATCG-TGTTGTAACA
1 TTTTAGTCACTTATGTT-T-GAAG-TGTAACA
9205538 TTTTAGTCA
1 TTTTAGTCA
9205547 TTTAGCCGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 17 0.50
30 2 0.06
31 15 0.44
ACGTcount: A:0.22, C:0.12, G:0.17, T:0.49
Consensus pattern (29 bp):
TTTTAGTCACTTATGTTTGAAGTGTAACA
Found at i:9210681 original size:13 final size:14
Alignment explanation
Indices: 9210653--9210693 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
9210643 CCGGCCTAGT
* *
9210653 AAACACCAAAAGAA
1 AAACACAAAAATAA
9210667 AAAC-CAAAAAT-A
1 AAACACAAAAATAA
9210679 AAACACAAAAATAA
1 AAACACAAAAATAA
9210693 A
1 A
9210694 TAAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.22
13 12 0.52
14 6 0.26
ACGTcount: A:0.76, C:0.17, G:0.02, T:0.05
Consensus pattern (14 bp):
AAACACAAAAATAA
Found at i:9214581 original size:17 final size:17
Alignment explanation
Indices: 9214559--9214597 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9214549 ACCATATCAT
9214559 TTTTATCCATTAAATAA
1 TTTTATCCATTAAATAA
** *
9214576 TTTTATTTATTAATTAA
1 TTTTATCCATTAAATAA
9214593 TTTTA
1 TTTTA
9214598 GAGTAAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTATCCATTAAATAA
Found at i:9215054 original size:18 final size:18
Alignment explanation
Indices: 9215031--9215067 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9215021 CCACAAGTCT
9215031 GGAGAGGGAGGGGGAGAG
1 GGAGAGGGAGGGGGAGAG
* *
9215049 GGAGAGGGATGTGGAGAG
1 GGAGAGGGAGGGGGAGAG
9215067 G
1 G
9215068 TTTTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.68, T:0.05
Consensus pattern (18 bp):
GGAGAGGGAGGGGGAGAG
Found at i:9215150 original size:17 final size:17
Alignment explanation
Indices: 9215116--9215149 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9215106 TTTTAAAAAA
*
9215116 TATATATTTTTAATTTT
1 TATATATTATTAATTTT
9215133 TATATATTATT-ATTTT
1 TATATATTATTAATTTT
9215149 T
1 T
9215150 TGTTAACCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATATATTATTAATTTT
Found at i:9218328 original size:6 final size:6
Alignment explanation
Indices: 9218314--9218345 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
9218304 CACTGGGACC
*
9218314 GGAGTT GGAGCT GGAGCT GGAGCT GGAGCT GG
1 GGAGCT GGAGCT GGAGCT GGAGCT GGAGCT GG
9218346 TATAGGAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.12, G:0.53, T:0.19
Consensus pattern (6 bp):
GGAGCT
Found at i:9223483 original size:34 final size:33
Alignment explanation
Indices: 9223412--9223489 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 33
9223402 CAATAATAGT
*
9223412 TCAGT-TCAGTTGGGCCTTAGCCCATTATAGTA
1 TCAGTATCAGTTGGGCCTTAGCCCATTACAGTA
9223444 TCAGTATCAGTGTGGGCCTTAGCCCATTACAGTGA
1 TCAGTATCAGT-TGGGCCTTAGCCCATTACAGT-A
*
9223479 -CAGTAACAGTT
1 TCAGTATCAGTT
9223490 CAGACATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
32 5 0.12
33 6 0.15
34 29 0.71
35 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (33 bp):
TCAGTATCAGTTGGGCCTTAGCCCATTACAGTA
Found at i:9232777 original size:28 final size:28
Alignment explanation
Indices: 9232737--9232793 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
9232727 GTCTTTTTCT
* *
9232737 TTTTTTTTAAAAAAATACTGGATTAGGC
1 TTTTTTTTAAAAAAATACGGGACTAGGC
*
9232765 TTTTTTTTAAAAAATTACGGGACTAGGC
1 TTTTTTTTAAAAAAATACGGGACTAGGC
9232793 T
1 T
9232794 GAAATCACGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (28 bp):
TTTTTTTTAAAAAAATACGGGACTAGGC
Found at i:9243765 original size:3 final size:3
Alignment explanation
Indices: 9243757--9243790 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
9243747 TAATTAAGGT
*
9243757 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9243791 GTGCATTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9251776 original size:21 final size:20
Alignment explanation
Indices: 9251750--9251800 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
9251740 TTTTTTATAT
9251750 TAAAATATTTT-TTACTTTAAA
1 TAAAATATTTTATT--TTTAAA
9251771 TAAAATATTATTATTTTTAAA
1 TAAAATATT-TTATTTTTAAA
9251792 -AAAATATTT
1 TAAAATATTT
9251801 AAATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.04
20 8 0.29
21 15 0.54
22 2 0.07
23 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TAAAATATTTTATTTTTAAA
Found at i:9252080 original size:14 final size:14
Alignment explanation
Indices: 9252056--9252089 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
9252046 GAAAGGAGAG
*
9252056 AAAGGAGAAGAAAA
1 AAAGAAGAAGAAAA
*
9252070 GAAGAAGAAGAAAA
1 AAAGAAGAAGAAAA
9252084 AAAGAA
1 AAAGAA
9252090 AAAAGGTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAAAA
Found at i:9252409 original size:22 final size:21
Alignment explanation
Indices: 9252384--9252477 Score: 84
Period size: 22 Copynumber: 4.3 Consensus size: 21
9252374 TTTATTATGA
9252384 AATTTTTGCCATTTTATTTATC
1 AATTTTTG-CATTTTATTTATC
*
9252406 AATTTTATGGATTTTTATTTATGC
1 AATTTT-TGCA-TTTTATTTAT-C
*
9252430 -ATTTATT-AATTTTATTTATC
1 AATTT-TTGCATTTTATTTATC
* *
9252450 AATTTTTTCCATTTTATTTATT
1 AA-TTTTTGCATTTTATTTATC
9252472 AATTTT
1 AATTTT
9252478 AGGAATTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.02
21 17 0.28
22 24 0.39
23 17 0.28
24 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (21 bp):
AATTTTTGCATTTTATTTATC
Found at i:9252485 original size:44 final size:44
Alignment explanation
Indices: 9252394--9252486 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
9252384 AATTTTTGCC
** * **
9252394 ATTTTATTTATCAATTTTATGGATTTTTATTTATGCATTTATTA
1 ATTTTATTTATCAATTTTATCCATTTTTATTTATGAATTTAGGA
* *
9252438 ATTTTATTTATCAATTTTTTCCA-TTTTATTTATTAATTTTAGGA
1 ATTTTATTTATCAATTTTATCCATTTTTATTTATGAA-TTTAGGA
9252482 ATTTT
1 ATTTT
9252487 TTGCAATTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 11 0.27
44 30 0.73
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (44 bp):
ATTTTATTTATCAATTTTATCCATTTTTATTTATGAATTTAGGA
Found at i:9256824 original size:21 final size:20
Alignment explanation
Indices: 9256796--9256834 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
9256786 TTAAGAATAA
*
9256796 TAAAAAATAAAGTTTTTAAT
1 TAAAAAATAAACTTTTTAAT
*
9256816 TAAATAAATATACTTTTTA
1 TAAA-AAATAAACTTTTTA
9256835 TATACAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (20 bp):
TAAAAAATAAACTTTTTAAT
Found at i:9257211 original size:14 final size:13
Alignment explanation
Indices: 9257187--9257221 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
9257177 TCATATATTT
9257187 TAAATATATAAAA
1 TAAATATATAAAA
9257200 TAAATAATATAAAA
1 TAAAT-ATATAAAA
*
9257214 TAATTATA
1 TAAATATA
9257222 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAATATATAAAA
Found at i:9257568 original size:20 final size:21
Alignment explanation
Indices: 9257543--9257581 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
9257533 TATGGTTTTC
9257543 ATTATTATT-TGAGATATTTA
1 ATTATTATTATGAGATATTTA
*
9257563 ATTATTATTATTAGATATT
1 ATTATTATTATGAGATATT
9257582 AGATAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (21 bp):
ATTATTATTATGAGATATTTA
Found at i:9274817 original size:30 final size:32
Alignment explanation
Indices: 9274772--9274833 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
9274762 GCTTAATATG
9274772 ACTTGACACTTTTTT-CTAATTTGGTACCTAA
1 ACTTGACACTTTTTTCCTAATTTGGTACCTAA
9274803 ACTTGACA-TTTTTTCCTAATTTGGTACCTAA
1 ACTTGACACTTTTTTCCTAATTTGGTACCTAA
9274834 TCTTTTTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (32 bp):
ACTTGACACTTTTTTCCTAATTTGGTACCTAA
Found at i:9275054 original size:24 final size:23
Alignment explanation
Indices: 9275027--9275072 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
9275017 TTTTTTTGTA
9275027 TTTTATATATTCAATTACTTTTAG
1 TTTTATATATTCAATTA-TTTTAG
* *
9275051 TTTTATTTATTTAATTATTTTA
1 TTTTATATATTCAATTATTTTA
9275073 TTAGTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATATATTCAATTATTTTAG
Found at i:9275298 original size:30 final size:30
Alignment explanation
Indices: 9275257--9275339 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
9275247 TATAACATTT
9275257 AAAAAATTTAGGTACCAAATTAAACCTAAA
1 AAAAAATTTAGGTACCAAATTAAACCTAAA
* *** *
9275287 AAAAAACTTAGGTACCAAATTGGGCCTTAA
1 AAAAAATTTAGGTACCAAATTAAACCTAAA
* *
9275317 AAAAAGTTTAAGTACCAAATTAA
1 AAAAAATTTAGGTACCAAATTAA
9275340 GAAAAAGTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (30 bp):
AAAAAATTTAGGTACCAAATTAAACCTAAA
Found at i:9278654 original size:18 final size:18
Alignment explanation
Indices: 9278612--9278656 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
9278602 GAAAAATGAG
9278612 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
9278629 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
9278646 AATTTTTGAAA
1 AATTTTTGAAA
9278657 CCTGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:9279224 original size:16 final size:15
Alignment explanation
Indices: 9279202--9279243 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
9279192 TATATAGGCA
*
9279202 TATAATAAAAGTATG
1 TATAATAAAAGTATC
9279217 TAATAATAATAA-TATC
1 T-ATAATAA-AAGTATC
9279233 TATAATAAAAG
1 TATAATAAAAG
9279244 AAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 11 0.48
17 2 0.09
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
TATAATAAAAGTATC
Found at i:9279280 original size:15 final size:17
Alignment explanation
Indices: 9279260--9279291 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
9279250 TTAGGAAACG
9279260 TACATAA-A-AAATATA
1 TACATAATATAAATATA
9279275 TACATAATATAAATATA
1 TACATAATATAAATATA
9279292 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:9279927 original size:17 final size:18
Alignment explanation
Indices: 9279885--9279933 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
9279875 GCCAAAGGGG
* *
9279885 GCCGGTCACCGGCCGATC
1 GCCGGCCACCGCCCGATC
*
9279903 GTCGGCCACCGCCCG-TC
1 GCCGGCCACCGCCCGATC
9279920 GCCGGCCACCGCCC
1 GCCGGCCACCGCCC
9279934 ACGGTGGGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.08, C:0.53, G:0.31, T:0.08
Consensus pattern (18 bp):
GCCGGCCACCGCCCGATC
Found at i:9280326 original size:19 final size:19
Alignment explanation
Indices: 9280302--9280352 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
9280292 TTTCTTGGTT
9280302 TTTTTTTGGGGGGGTTAGG
1 TTTTTTTGGGGGGGTTAGG
***
9280321 TTTTTTTTTTGGGGTTAGG
1 TTTTTTTGGGGGGGTTAGG
9280340 TTTTTTTGGGGGG
1 TTTTTTTGGGGGG
9280353 CTTAATGGGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.04, C:0.00, G:0.41, T:0.55
Consensus pattern (19 bp):
TTTTTTTGGGGGGGTTAGG
Found at i:9281374 original size:74 final size:73
Alignment explanation
Indices: 9281253--9281467 Score: 241
Period size: 74 Copynumber: 2.9 Consensus size: 73
9281243 TTAAAAGCAG
* * * *
9281253 AAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTT
1 AAATTGAAATTAACTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
9281318 GAAAGACAA
66 GAAA-ACAA
* * * ***
9281327 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCGTTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTAACTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * *
9281392 TTTACAACAG
64 TTGAAAACAA
* * * *
9281402 AAATTGAAATTATCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAATTTTT
1 AAATTGAAATTAACTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTT
9281467 T
65 T
9281468 TTGAAAAATA
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
74 55 0.47
75 52 0.45
76 9 0.08
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (73 bp):
AAATTGAAATTAACTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAACAA
Found at i:9281437 original size:75 final size:75
Alignment explanation
Indices: 9281246--9281487 Score: 249
Period size: 75 Copynumber: 3.2 Consensus size: 75
9281236 TATAAATTTA
* * *
9281246 AAAG-CAGAAATTGAAATTAACTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGT
1 AAAGACAGAAATTGAAATTAACTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
*
9281309 TGA-TTTTTTG
65 TGATTTTTTTT
* * * * * ***
9281319 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCGTTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
9281384 GATTTTTTTTT
66 GA-TTTTTTTT
* * * *
9281395 ACA-ACAGAAATTGAAATTATCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAGACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
9281459 GAATTTTTTTT
66 G-ATTTTTTTT
* * *
9281470 GAAAAATATAAATTGAAA
1 -AAAGACAGAAATTGAAA
9281488 AGCAGAAATT
Statistics
Matches: 136, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
73 4 0.03
74 49 0.36
75 61 0.45
76 11 0.08
77 11 0.08
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (75 bp):
AAAGACAGAAATTGAAATTAACTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTT
Found at i:9281554 original size:240 final size:233
Alignment explanation
Indices: 9281148--9283835 Score: 1863
Period size: 240 Copynumber: 11.3 Consensus size: 233
9281138 GAGTTGATTT
* * * *
9281148 TTTTTTTGACAACAGAAATTGAAATTACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* *
9281213 ATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCAACGTGCCT
66 ATGAGTTG-ATTTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAACGTGCC-
* * * *
9281278 TGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACCTC
127 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAAATTACCTC
* * ***
9281343 AGCATGTCTTGAGGCTCAACTCGTTTCTCGCAATATGAGTTGA
191 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * *
9281386 TTTTTTTTTACAACAGAAATTGAAATTATCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAA
1 -TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
9281451 TATGAGTTGAATTTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGC
65 TATGAGTTG-A-TTTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAACGTGC
* *
9281516 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAAAAATTGAAAATACC
126 C-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA-ACAGAAATTGAAATTACC
* * * **
9281581 TCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGAGTTGA
189 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
9281626 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
*
9281691 ATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTGCTT
66 ATGAGTTG-ATTTTTTTG-AAAATATAAATTGAAAA-CAGAAATTGAAATTACCTCAACGTGC-C
9281756 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAATTACCTC
127 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTACCTC
** * *
9281820 AGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTAA
191 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
9281863 TTTTTGAAAAATAAATTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTC
1 -TTTT------T---TT-AAAAACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTC
* *
9281927 ACCTCTCGCAATATGAGTTGA--TTTTTG---------A---AAAACAGAAATTAAAAATACCTC
54 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTC
** *
9281978 AGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAA
119 AACGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------TGAA---AA
* * * ** *
9282043 CAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGA
172 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * * * **
9282105 TTTTTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGTTCAACTCATTTCTCG
1 ---TTTTTTT-AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * * *
9282170 CAATATGAGTTGATTTTTTTG-------AAA--G---ACAAAAATTGAAAATACCTCAGCATGTC
62 CAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAACGTG-C
* ** *
9282223 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
126 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAATTACCT
9282288 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
190 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * *
9282332 --ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA--TTTTG-AAC
1 TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* * *** * ** *
9282392 A-GAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
66 ATG-AGTTG--ATT---T-----T-T-TTGA-----AAAT-ATAAATTG-AA-A--A-CAGAA-A
* ** ** * *
9282456 TTGAAA--ACAT-AAATTGAAATTA-CCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
106 TTGAAATTACCTCAACGTG-CCTGAGGCTC-A---------A--CTC-AC-C---TCTCGCAATA
* ** *
9282517 TGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACAGAGGCTCAACTC
153 TGAGTTGA--TTTTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCTGAGGCTCAACTC
*
9282582 ACCTCTCGCAATATGAGCTGA
213 ACCTCTCGCAATATGAGTTGA
* * *
9282603 --TTTTGAAAAAGTAGAAATT--AA--A----A--G-G---T-----TCAACCCACCTCTCGCAA
1 TTTTTTTAAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * * * *
9282647 TATGAGTTGATTTATTTT-----TTTGAAATTAAAACACAAAAATCGACAATT-CCTCAGCGTGC
65 TATGAGTTGATTT-TTTTGAAAATAT-AAATTGAAA-ACAGAAATTGA-AATTACCTCAACGTG-
* *
9282706 CCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAATTACC
125 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAATTACC
* *
9282770 TCAGCATGTCCTGAGGCTCAACGCACCTCTCGCAATATGAGTTGA
189 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*** * * * *
9282815 TTTTGACAAACAGAAACAAAAATTGAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACTTC
1 TTTT--TTTA-A-AAACAGAAATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTC
* * * * * *
9282879 TTGCAATATGAATTGATTTTTTTG-----A-CAA-T------AGAAATTGCAATTACCTCAGCAT
59 TCGCAATATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAACGT
* * * *
9282931 GTCCCGAGGCTCAACTCGCCTCTCGTAATATGAGTTGA-TTTTTGAAAAACATAAATTGAAACAC
124 G-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTG------
* * *
9282995 AAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTATCGCAATATGAGTTGA
181 --AAA-T-----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
9283056 -TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTAAAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * * * ** *
9283120 TATGAGTTGATTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTG
65 TATGAGTTGA-TTTTTTTGA-AAATATAAATTG-AAAACAGAAATTGAAATTACCTCA--ACGT-
9283185 AGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAGAAATTGAAATTA
124 -GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTA
*
9283248 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
187 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
9283295 TTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTAAAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * * **
9283360 TATGAGTTGATTTTTTTTTACGAATAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCACATG
65 TATGAGTTGA-TTTTTTTGA-AAATATAAATTGAA-AACAGAAATTGAAATTACCTCA--AC--G
* * *
9283425 AGCC-GAGGCTTAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTA
123 TGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTA
*
9283488 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
187 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
9283535 -TTTTTGAAAAACAGAAATTTAAGAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
1 TTTTTTTAAAAACAGAAATTGAA-ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* ** *
9283599 TATGAGTTGA-TTTTTT-----T-T--A-CG--AACAGAAATTGAAAAGACCTCAGCATGTGAGC
65 TATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCA--ACGT--GC
*
9283652 C-GAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCT
126 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAGAAATTGAAATTACCT
* *
9283715 CAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGA
190 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
9283759 -TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAAT
1 TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
9283823 ATGAGTTGATTTT
66 ATGAGTTGATTTT
9283836 GAAAAACAAA
Statistics
Matches: 2060, Mismatches: 206, Indels: 381
0.78 0.08 0.14
Matches are distributed among these distances:
212 34 0.02
214 30 0.01
215 3 0.00
216 1 0.00
217 25 0.01
218 10 0.00
219 5 0.00
220 4 0.00
221 43 0.02
222 8 0.00
223 50 0.02
224 156 0.08
225 1 0.00
226 4 0.00
227 126 0.06
228 2 0.00
229 2 0.00
230 9 0.00
231 60 0.03
232 12 0.01
233 6 0.00
234 11 0.01
235 99 0.05
236 16 0.01
237 150 0.07
238 131 0.06
239 260 0.13
240 388 0.19
241 44 0.02
242 60 0.03
243 2 0.00
244 8 0.00
245 12 0.01
246 1 0.00
247 4 0.00
248 57 0.03
249 2 0.00
250 3 0.00
251 23 0.01
252 5 0.00
253 58 0.03
254 11 0.01
255 4 0.00
256 7 0.00
257 1 0.00
258 1 0.00
260 1 0.00
261 1 0.00
262 4 0.00
263 1 0.00
264 1 0.00
267 18 0.01
268 11 0.01
269 22 0.01
270 2 0.00
271 43 0.02
272 7 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (233 bp):
TTTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTGAAAATATAAATTGAAAACAGAAATTGAAATTACCTCAACGTGCCTGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
Found at i:9281575 original size:74 final size:74
Alignment explanation
Indices: 9281482--9282383 Score: 420
Period size: 74 Copynumber: 11.7 Consensus size: 74
9281472 AAAATATAAA
* *
9281482 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
9281547 GTTGA-TTTT
65 GTTGATTTTT
* * * * **
9281556 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
9281621 GTTGATTTTT
65 GTTGATTTTT
* *
9281631 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
9281695 GTTGAATTTTT
65 GTTG-ATTTTT
* ** *** ** * * *
9281706 TTGAAAA-ATATAAATTGAAA--AGCAGAAATTGAAATT-A-CCTCAACGTGCTTTGAGGCTCAA
1 TTGAAAACA-A-AAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAAC-T-C----A-CCTC-T
* * * * * **
9281766 CTCACCTCTCGCAATATGAGTTGA
55 CGCA-ATAT-G-AGT-TGATTTTT
**** ** *
9281790 TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCATTTCTCGTAAT
1 TTGAAAACAA----AAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAAT
*
9281854 ATGAGTT-A-ATTT
61 ATGAGTTGATTTTT
* * *** * * * * * * * *
9281866 TTGAAAA-ATAAATTGAAA-CACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCAC
1 TTGAAAACAAAAATTGAAATTAC-CTCA--G-C-GTGCCT-TGAG-G-CTC-A-ACTCACCTCTC
* *
9281929 -C--TCTCGCAATATGAGTTGATTT
56 GCAATAT-G-AGT-TGA-TT--TTT
* * * *
9281951 TTGAAAAACAGAAATTAAAAATACCTCAGTGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
1 TTG-AAAACAAAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
9282015 AGTTGATTTTT
64 AGTTGATTTTT
* * * * * * **
9282026 GAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
1 -------TTGAA---AACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTC
*
9282091 GCAATAGGAGTTGATTTTTTTT
56 GCAATATGAGTTGA---TTTTT
* * * * * **
9282113 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGTTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
9282178 GTTGATTTTT
65 GTTGATTTTT
* * * **
9282188 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
9282253 GTTGATTTTT
65 GTTGATTTTT
* *
9282263 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
9282327 GTTGA--ATT
65 GTTGATTTTT
* *
9282335 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCA
9282384 TTTTGAACAG
Statistics
Matches: 625, Mismatches: 133, Indels: 142
0.69 0.15 0.16
Matches are distributed among these distances:
70 2 0.00
71 11 0.02
72 47 0.08
73 7 0.01
74 179 0.29
75 114 0.18
76 15 0.02
77 7 0.01
78 71 0.11
79 10 0.02
80 18 0.03
81 11 0.02
82 7 0.01
83 5 0.01
84 66 0.11
85 10 0.02
86 4 0.01
87 24 0.04
88 4 0.01
89 7 0.01
90 6 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
TTGAAAACAAAAATTGAAATTACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:9281813 original size:73 final size:72
Alignment explanation
Indices: 9281720--9281883 Score: 224
Period size: 73 Copynumber: 2.3 Consensus size: 72
9281710 AAAATATAAA
*
9281720 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CTTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTC-CTGAGGCTCAACTCACCTCTCGCAATATG
*
9281784 AGTTGATTT
64 AGTTAATTT
* ** *
9281793 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGA-AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
9281858 GTTAATTT
65 GTTAATTT
*
9281866 TTGAAAA-ATAAATTGAAA
1 TTGAAAACAGAAATTGAAA
9281884 CACAAAAATT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
71 10 0.12
72 3 0.04
73 65 0.79
74 4 0.05
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTAATTT
Found at i:9281938 original size:158 final size:158
Alignment explanation
Indices: 9281556--9282353 Score: 936
Period size: 158 Copynumber: 5.0 Consensus size: 158
9281546 AGTTGATTTT
* *
9281556 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTG-AAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
9281621 GTTGATTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTTGA-TTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
9281685 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
128 CGCAATATGAGTT-AA--TTTTTG-AAAACATAAA
* * **
9281720 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CTTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-CAAAAATTGAAA-TACCTCAGCGTGTC-TTGAGGCTCAACTCATTTCTCGCAATATG
**
9281784 AGTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCT
63 AGTTGATTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
9281848 CGTAATATGAGTTAATTTTTGAAAA-ATAAA
128 CGCAATATGAGTTAATTTTTGAAAACATAAA
* ** **
9281878 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGA-AATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * * *
9281943 GTTGA-TTTTTGAAAAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTC
64 GTTGATTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
9282007 GCAATATGAGTTGATTTTTGAAAAACATAAA
129 GCAATATGAGTTAATTTTTG-AAAACATAAA
* * *
9282038 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAG
1 TTGAAAACAAAAATTGAAA-TACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
* * * * * * **
9282101 TTGATTTTTTTTTTGA-AAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGTTCAACTCATT
65 TTGA----TTTTTTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
*
9282165 TCTCGCAATATGAGTTGA-TTTT-------T---
125 TCTCGCAATATGAGTTAATTTTTGAAAACATAAA
*
9282188 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAAAAATTG-AAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
9282253 GTTGATTTTTTTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 GTTGA-TTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
9282317 CGCAATATGAGTTGAA-TTTTGAAAACAGAAA
128 CGCAATATGAGTT-AATTTTTGAAAACATAAA
9282348 TTGAAA
1 TTGAAA
9282354 TTACCTCAGC
Statistics
Matches: 550, Mismatches: 52, Indels: 68
0.82 0.08 0.10
Matches are distributed among these distances:
149 53 0.10
150 18 0.03
152 1 0.00
153 56 0.10
154 3 0.01
156 2 0.00
157 52 0.09
158 136 0.25
159 12 0.02
160 20 0.04
161 6 0.01
162 71 0.13
163 64 0.12
164 56 0.10
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (158 bp):
TTGAAAACAAAAATTGAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
TGATTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTAATTTTTGAAAACATAAA
Found at i:9281951 original size:85 final size:84
Alignment explanation
Indices: 9281793--9282109 Score: 347
Period size: 84 Copynumber: 3.9 Consensus size: 84
9281783 GAGTTGATTT
* ** *
9281793 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGA-AAACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
9281858 GTTAATTTTTGAAAAATAAA
65 GTTGATTTTTGAAAAATAAA
* * *
9281878 TTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAGAAATTGA-AACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
9281942 AGTTGATTTTTG--------A
64 AGTTGATTTTTGAAAAATAAA
* * *
9281955 ---AAAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9282017 TTGATTTTTGAAAAACATAAA
66 TTGATTTTTG-AAAA-ATAAA
* * ** *
9282038 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAG
1 TTGAAAACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
9282101 TTGATTTTT
66 TTGATTTTT
9282110 TTTTTGAAAG
Statistics
Matches: 196, Mismatches: 20, Indels: 33
0.79 0.08 0.13
Matches are distributed among these distances:
72 2 0.01
73 61 0.31
74 3 0.02
77 1 0.01
83 1 0.01
84 63 0.32
85 63 0.32
86 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (84 bp):
TTGAAAACAGAAATTGAAACTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAATAAA
Found at i:9281997 original size:73 final size:74
Alignment explanation
Indices: 9281878--9282383 Score: 545
Period size: 75 Copynumber: 6.7 Consensus size: 74
9281868 GAAAAATAAA
* * * **
9281878 TTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9281943 GTTGA-TTT
66 GTTGATTTT
* * * *
9281951 TTGAAAAACAGAAATTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9282016 GTTGA-TTT
66 GTTGATTTT
* * **
9282024 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTGAAAAAC---------A-A-AAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
*
9282089 TCGCAATAGGAGTTGATTTTTTTT
55 TCGCAATATGAGTTGA----TTTT
* * * * **
9282113 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGTTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9282178 GTTGATTTTT
66 GTTGA-TTTT
* * **
9282188 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
9282253 GTTGATTTTT
66 GTTGA-TTTT
* * * *
9282263 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
9282327 GTTGA-ATT
66 GTTGATTTT
* *
9282335 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
9282384 TTTTGAACAG
Statistics
Matches: 381, Mismatches: 36, Indels: 33
0.85 0.08 0.07
Matches are distributed among these distances:
72 49 0.13
73 75 0.20
74 58 0.15
75 81 0.21
78 53 0.14
79 1 0.00
80 1 0.00
82 1 0.00
84 51 0.13
89 11 0.03
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:9282397 original size:49 final size:49
Alignment explanation
Indices: 9282340--9282435 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
9282330 GAATTTTGAA
*
9282340 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
9282389 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
9282436 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:9282482 original size:121 final size:121
Alignment explanation
Indices: 9282268--9282507 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
9282258 TTTTTTTGAC
*
9282268 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
9282333 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* **
9282389 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
9282454 TTTTGAAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
9282508 CTCGCAATAT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (121 bp):
AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:9282498 original size:72 final size:72
Alignment explanation
Indices: 9282389--9282611 Score: 288
Period size: 72 Copynumber: 3.0 Consensus size: 72
9282379 ACTCATTTTG
9282389 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
9282454 TTTTGAA
66 TTTTGAA
*
9282461 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
*
9282526 TTTTTTTGAA
65 --ATTTTGAA
* * * * ** *
9282536 AGACAGAAATTGAAAATACCTCAGCATGTGAAC-AGAGGCTCAACTCACCTCTCGCAATATGAGC
1 A-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
9282600 TG-ATTTTGAA
62 TGAATTTTGAA
9282610 AA
1 AA
9282612 AGTAGAAATT
Statistics
Matches: 133, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
72 63 0.47
73 1 0.01
74 8 0.06
75 8 0.06
76 19 0.14
78 33 0.25
79 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:9282788 original size:73 final size:73
Alignment explanation
Indices: 9282691--9282991 Score: 329
Period size: 73 Copynumber: 4.0 Consensus size: 73
9282681 AAAAATCGAC
* * *
9282691 AATT-CCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
9282755 GAAATTGA
66 GAAATTGA
* *
9282763 AATTACCTCAGCATGTCCTGAGGCTCAACGCACCTCTCGCAATATGAGTTGA-TTTTGACAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-A
*
9282827 GAAACAAAAATTGA
61 -AAACAGAAATTGA
* ** * * * *
9282841 AAATACCTCAGCACGTGAGCCGAGGCTCAACTCACTTCTTGCAATATGAATTGATTTTTTTG-AC
1 AATTACCTCAGCA--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
* *
9282905 AATAGAAATTGC
62 AACAGAAATTGA
* *
9282917 AATTACCTCAGCATGTCCCGAGGCTCAACTCGCCTCTCGTAATATGAGTTGATTTTTGAAAAACA
1 AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
*
9282982 TAAATTGA
66 GAAATTGA
9282990 AA
1 AA
9282992 CACAAAAATT
Statistics
Matches: 186, Mismatches: 30, Indels: 25
0.77 0.12 0.10
Matches are distributed among these distances:
72 15 0.08
73 54 0.29
74 32 0.17
76 22 0.12
77 2 0.01
78 24 0.13
80 32 0.17
83 5 0.03
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
AATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
GAAATTGA
Found at i:9283056 original size:87 final size:87
Alignment explanation
Indices: 9282910--9283074 Score: 260
Period size: 87 Copynumber: 1.9 Consensus size: 87
9282900 TTGACAATAG
* * * *
9282910 AAATTGCAATTACCTCAGCATGTCCCGAGGCTCAACTCGCCTCTCGTAATATGAGTTGATTTTTG
1 AAATTGCAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTG
*
9282975 AAAAACATAAATTGAAACACAA
66 AAAAACAGAAATTGAAACACAA
*
9282997 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
1 AAATTG-CAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
9283061 GAAAAACAGAAATT
65 GAAAAACAGAAATT
9283075 TAAAAATACC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 68 0.96
88 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (87 bp):
AAATTGCAATTACCTCAGCATGCCCCGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTGAAACACAA
Found at i:9283161 original size:14 final size:14
Alignment explanation
Indices: 9283142--9283170 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9283132 TTTTTTTACG
9283142 AACAGAAATTGAAA
1 AACAGAAATTGAAA
9283156 AACAGAAATTGAAA
1 AACAGAAATTGAAA
9283170 A
1 A
9283171 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:9283215 original size:92 final size:91
Alignment explanation
Indices: 9283059--9283226 Score: 259
Period size: 92 Copynumber: 1.8 Consensus size: 91
9283049 GAGTTGATTT
* **
9283059 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTAGCCTGAGGCTCAACTCACCTCTCGCAATATG
9283124 AGTTGATTTTTTTTTACGAACAGAAA
66 AGTTGATTTTTTTTTACGAACAGAAA
*
9283150 TTGAAAAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GT-AGCCTGAGGCTCAACTCACCTCTCGCAAT
9283213 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
9283227 GACAAACAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
90 14 0.20
91 14 0.20
92 40 0.57
93 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (91 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTAGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTTTACGAACAGAAA
Found at i:9283282 original size:73 final size:73
Alignment explanation
Indices: 9283150--9283374 Score: 342
Period size: 75 Copynumber: 3.0 Consensus size: 73
9283140 CGAACAGAAA
* * **
9283150 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGACAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
9283215 GAGTTGATTT
64 GAGTTGATTT
*
9283225 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
9283290 GTTGATTTT
66 GTTGA-TTT
* * *
9283299 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
9283364 AGTTGATTT
65 AGTTGATTT
9283373 TT
1 TT
9283375 TTTTACGAAT
Statistics
Matches: 139, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
73 38 0.27
74 21 0.15
75 80 0.58
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:9283522 original size:73 final size:73
Alignment explanation
Indices: 9283427--9283907 Score: 685
Period size: 73 Copynumber: 6.5 Consensus size: 73
9283417 AGCACATGAG
* *
9283427 CCGAGGCTTAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
9283492 AGCGTGTC
66 AGCGTGTC
* * *
9283500 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAGAATACCT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAA-ATTACCT
9283565 CAGCGTGTC
65 CAGCGTGTC
* * * **
9283574 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAAAGACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTGAAATTACC
**
9283639 TCAGCATGTGAG
64 TCAGC--GTGTC
*
9283651 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
9283716 AGCGTGTC
66 AGCGTGTC
*
9283724 CCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
9283789 AGCGTGTC
66 AGCGTGTC
* * * * * *
9283797 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGTACCTC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
**
9283861 AATGTGTC
66 AGCGTGTC
** *
9283869 TTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
9283908 CCTTGAAAAG
Statistics
Matches: 367, Mismatches: 35, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
72 63 0.17
73 162 0.44
74 49 0.13
75 39 0.11
76 18 0.05
77 36 0.10
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTC
AGCGTGTC
Found at i:9302171 original size:12 final size:12
Alignment explanation
Indices: 9302149--9302184 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
9302139 TGGGATATGC
*
9302149 AATGAATGAATG
1 AATGCATGAATG
*
9302161 GATGCATGAATG
1 AATGCATGAATG
9302173 AATGCATGAATG
1 AATGCATGAATG
9302185 TCAGTCATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:9302171 original size:16 final size:17
Alignment explanation
Indices: 9302145--9302176 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
9302135 AGTATGGGAT
9302145 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
9302162 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
9302177 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:9303572 original size:17 final size:17
Alignment explanation
Indices: 9303546--9303589 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
9303536 AAAAATGAGG
*
9303546 ATTTTTAAAACACGAAA
1 ATTTTGAAAACACGAAA
9303563 ATTTTGAAAACACGAAA
1 ATTTTGAAAACACGAAA
9303580 ATTTTTGAAA
1 A-TTTTGAAA
9303590 CCTGAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (17 bp):
ATTTTGAAAACACGAAA
Found at i:9303587 original size:18 final size:18
Alignment explanation
Indices: 9303546--9303636 Score: 82
Period size: 18 Copynumber: 5.1 Consensus size: 18
9303536 AAAAATGAGG
9303546 ATTTTT-AAAACACGAAA
1 ATTTTTGAAAACACGAAA
9303563 A-TTTTGAAAACACGAAA
1 ATTTTTGAAAACACGAAA
*
9303580 ATTTTTG-AAAC-CTGAATT
1 ATTTTTGAAAACAC-GAA-A
*
9303598 TTTTTTAGAAAAACACGAAA
1 ATTTTT-G-AAAACACGAAA
* *
9303618 AATTTTGGAAACACGAAA
1 ATTTTTGAAAACACGAAA
9303636 A
1 A
9303637 GTTTACAACA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
16 5 0.08
17 20 0.33
18 21 0.35
19 2 0.03
20 4 0.07
21 7 0.12
22 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (18 bp):
ATTTTTGAAAACACGAAA
Found at i:9303590 original size:17 final size:17
Alignment explanation
Indices: 9303546--9303636 Score: 69
Period size: 17 Copynumber: 5.1 Consensus size: 17
9303536 AAAAATGAGG
*
9303546 ATTTTTAAAACACGAAA
1 ATTTTTGAAACACGAAA
9303563 A-TTTTGAAAACACGAAA
1 ATTTTTG-AAACACGAAA
*
9303580 ATTTTTGAAAC-CTGAATT
1 ATTTTTGAAACAC-GAA-A
*
9303598 TTTTTTAGAAAAACACGAAAA
1 ATTTTT-G--AAACACG-AAA
*
9303619 ATTTTGGAAACACGAAA
1 ATTTTTGAAACACGAAA
9303636 A
1 A
9303637 GTTTACAACA
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
16 5 0.08
17 23 0.39
18 17 0.29
19 1 0.02
20 1 0.02
21 9 0.15
22 3 0.05
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (17 bp):
ATTTTTGAAACACGAAA
Found at i:9304207 original size:15 final size:17
Alignment explanation
Indices: 9304187--9304218 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
9304177 TTAGGAAACG
9304187 TACATAA-A-AAATATA
1 TACATAATATAAATATA
9304202 TACATAATATAAATATA
1 TACATAATATAAATATA
9304219 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:9304944 original size:11 final size:11
Alignment explanation
Indices: 9304911--9304948 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9304901 ATGTATATAT
9304911 AAAGAAAGAAA
1 AAAGAAAGAAA
*
9304922 AAA-AACACAAA
1 AAAGAA-AGAAA
9304933 AAAGAAAGAAA
1 AAAGAAAGAAA
9304944 AAAGA
1 AAAGA
9304949 TTCGAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 2 0.09
11 19 0.83
12 2 0.09
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:9305252 original size:19 final size:20
Alignment explanation
Indices: 9305227--9305279 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
9305217 GTTTCTTGGT
9305227 TTTTTTTGGGGGGGGTTAGG
1 TTTTTTTGGGGGGGGTTAGG
**
9305247 TTTTTTT-TTGGGGGTTAGG
1 TTTTTTTGGGGGGGGTTAGG
9305266 TTTTTTTGGGGGGG
1 TTTTTTTGGGGGGG
9305280 CTTAATGGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.04, C:0.00, G:0.45, T:0.51
Consensus pattern (20 bp):
TTTTTTTGGGGGGGGTTAGG
Found at i:9305269 original size:17 final size:18
Alignment explanation
Indices: 9305237--9305277 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
9305227 TTTTTTTGGG
9305237 GGGGGTTAGGTTTTTTTTT
1 GGGGGTTAGG-TTTTTTTT
9305256 GGGGGTTAGG-TTTTTTT
1 GGGGGTTAGGTTTTTTTT
9305273 GGGGG
1 GGGGG
9305278 GGCTTAATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.55
19 10 0.45
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (18 bp):
GGGGGTTAGGTTTTTTTT
Found at i:9311251 original size:18 final size:17
Alignment explanation
Indices: 9311230--9311293 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
9311220 TTATTTTCGC
9311230 TATTATTATTA-TATCTG
1 TATTATTATTACTAT-TG
** *
9311247 ATATTGCTATTATTATTG
1 -TATTATTATTACTATTG
9311265 TATTATTATTACT-TATG
1 TATTATTATTACTAT-TG
9311282 TTATTATTATTA
1 -TATTATTATTA
9311294 TTACTATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 1 0.03
17 12 0.32
18 22 0.58
19 3 0.08
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (17 bp):
TATTATTATTACTATTG
Found at i:9311260 original size:3 final size:3
Alignment explanation
Indices: 9311254--9311304 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
9311244 CTGATATTGC
* * *
9311254 TAT TAT TAT T-G TAT TAT TAT TACT TA- TGT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
9311298 TAT TAT T
1 TAT TAT T
9311305 TGCTCATTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:9311280 original size:21 final size:20
Alignment explanation
Indices: 9311256--9311305 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
9311246 GATATTGCTA
9311256 TTATTATTGTATTATTATTAC
1 TTATTATT-TATTATTATTAC
9311277 TTATGT-TATTATTATTATTAC
1 TTAT-TAT-TTATTATTATTAC
9311298 -TATTATTT
1 TTATTATTT
9311306 GCTCATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 3 0.12
20 4 0.15
21 17 0.65
22 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (20 bp):
TTATTATTTATTATTATTAC
Found at i:9312373 original size:107 final size:107
Alignment explanation
Indices: 9312152--9312455 Score: 407
Period size: 107 Copynumber: 2.8 Consensus size: 107
9312142 TTTCTAATTG
* * * *
9312152 AGGCAATATTTAGCGTTTAGAAATTCGAGAAAACTTGCCCTAATGTGCTGGGTTTTGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTTGA--TTTCT
* * *
9312217 TGTTCAACCAAATAGCTAAGTATCCTTTTAAAAATTTCAAAATA
64 CGTTTAACCAAATAGCTAAATATCCTTTTAAAAATTTCAAAATA
* *
9312261 GGGCAATGTTTTGCATTTGGAAA-TCTGAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTC
1 AGGCAATGTTTTGCGTTTGGAAATTC-GAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTC
*
9312325 GTTTAATCAAATAGCTAAATATCCTTTTAAAAATTTCAAAATA
65 GTTTAACCAAATAGCTAAATATCCTTTTAAAAATTTCAAAATA
* * *
9312368 AGGCAATGTTTTGCGTTTGGAAATTCGATG--AGCGCGCCCTAATGTGCTGGGTTTCGATTTCTC
1 AGGCAATGTTTTGCGTTTGGAAATTCGA-GAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTC
* * *
9312431 GTTTAACCAAACAGCCAAACATCCT
65 GTTTAACCAAATAGCTAAATATCCT
9312456 CTTGAATTTT
Statistics
Matches: 173, Mismatches: 19, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
106 51 0.29
107 68 0.39
108 5 0.03
109 49 0.28
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (107 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTCG
TTTAACCAAATAGCTAAATATCCTTTTAAAAATTTCAAAATA
Found at i:9318160 original size:44 final size:44
Alignment explanation
Indices: 9318102--9318346 Score: 262
Period size: 44 Copynumber: 5.6 Consensus size: 44
9318092 TTCGTCTTGT
* * * * *
9318102 TCCACTGCAGCTTCAGGGAGATAAAATTTGTTGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* ** *
9318146 TCCACTATAACTTCAAAGAGATAAGATTTGTAGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* * *
9318190 TCTACTACAACTTCAGGGAGATAAGATTCGTAACTCCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* * *
9318234 TCCACTGCAAC-TCTAGGGAGATAAGATTCATAGCTCCAATCTGC
1 TCCACTACAACTTC-AGGGAGATAAGATTCGTAGCTTCAATCTGC
* * * *
9318278 TCTA-T-CGTAACTTCAGAGAGATGAGATTCGTAGCTTCAATTTGC
1 TCCACTAC--AACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
*
9318322 TCCACTACAACTTCTGGGAGATAAG
1 TCCACTACAACTTCAGGGAGATAAG
9318347 GTTTGCTATG
Statistics
Matches: 167, Mismatches: 28, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 159 0.95
45 3 0.02
46 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
Found at i:9318256 original size:132 final size:132
Alignment explanation
Indices: 9318102--9318346 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
9318092 TTCGTCTTGT
* ** * *
9318102 TCCACTGCAGCTTCAGGGAGATAAAATTTGTTGCTTCAATCTGCTCCA-CTATAACTTCAAAGAG
1 TCCACTGCAACTTCAGGGAGATAAAATTCATAGCTCCAATCTGCTCCATC-ATAACTTCAAAGAG
* *
9318166 ATAAGATTTGTAGCTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATTCGTAACTCCAATC
65 ATAAGATTCGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTCGTAACTCCAATC
9318231 TGC
130 TGC
* * * *
9318234 TCCACTGCAAC-TCTAGGGAGATAAGATTCATAGCTCCAATCTGCTCTATCGTAACTTCAGAGAG
1 TCCACTGCAACTTC-AGGGAGATAAAATTCATAGCTCCAATCTGCTCCATCATAACTTCAAAGAG
* * *
9318298 ATGAGATTCGTAGCTTCAATTTGCTCCACTACAACTTCTGGGAGATAAG
65 ATAAGATTCGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAG
9318347 GTTTGCTATG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
131 2 0.02
132 94 0.97
133 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
TCCACTGCAACTTCAGGGAGATAAAATTCATAGCTCCAATCTGCTCCATCATAACTTCAAAGAGA
TAAGATTCGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTCGTAACTCCAATCT
GC
Found at i:9319353 original size:44 final size:44
Alignment explanation
Indices: 9319251--9319373 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
9319241 GTAATCGACT
* * * * * * *
9319251 ATCGATGCCACTATCCCCGACAGGGTCTTACACG-AACTCATAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA
* *
9319294 A-CGATACCAATGTCCCAGACATAGTCTTACACGTAAATCACAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA
*
9319337 ATCGATGCCAATGTCCCAGACGTGGTCTTACACGTAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAA
9319374 TTACATATTG
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 26 0.39
43 8 0.12
44 32 0.48
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA
Found at i:9324954 original size:78 final size:78
Alignment explanation
Indices: 9324825--9324981 Score: 314
Period size: 78 Copynumber: 2.0 Consensus size: 78
9324815 GTGAAGAAAC
9324825 AAGGAAAAGAAAATGAAATTGTAGAATGCTCACAAACTTTTGCTATGAAATAAAAGAAAGTAATT
1 AAGGAAAAGAAAATGAAATTGTAGAATGCTCACAAACTTTTGCTATGAAATAAAAGAAAGTAATT
9324890 TTATTTTTATTCT
66 TTATTTTTATTCT
9324903 AAGGAAAAGAAAATGAAATTGTAGAATGCTCACAAACTTTTGCTATGAAATAAAAGAAAGTAATT
1 AAGGAAAAGAAAATGAAATTGTAGAATGCTCACAAACTTTTGCTATGAAATAAAAGAAAGTAATT
9324968 TTATTTTTATTCT
66 TTATTTTTATTCT
9324981 A
1 A
9324982 TTCAAGTATG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (78 bp):
AAGGAAAAGAAAATGAAATTGTAGAATGCTCACAAACTTTTGCTATGAAATAAAAGAAAGTAATT
TTATTTTTATTCT
Found at i:9331882 original size:18 final size:18
Alignment explanation
Indices: 9331861--9331898 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9331851 TAGTTTACCC
9331861 TATAAT-TTATGGTTATTT
1 TATAATATTATGGTT-TTT
*
9331879 TATAATATTCTGGTTTTT
1 TATAATATTATGGTTTTT
9331897 TA
1 TA
9331899 GAAAACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.61
Consensus pattern (18 bp):
TATAATATTATGGTTTTT
Found at i:9333568 original size:22 final size:24
Alignment explanation
Indices: 9333508--9333592 Score: 75
Period size: 26 Copynumber: 3.5 Consensus size: 24
9333498 CTTTTATATG
*
9333508 ATTATTTTAACTTGCTTTGTAAATT
1 ATTATTTTAAGTTGCTTTGT-AATT
*
9333533 ATCTATGTTAAGTTGCTTTGT-A-T
1 AT-TATTTTAAGTTGCTTTGTAATT
** *
9333556 ATTATTTTAAGTTATTTTATATATT
1 ATTATTTTAAGTTGCTTTGTA-ATT
9333581 AATTATTTTAAG
1 -ATTATTTTAAG
9333593 ATTATCCTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
22 14 0.29
23 3 0.06
24 2 0.04
25 3 0.06
26 27 0.55
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.56
Consensus pattern (24 bp):
ATTATTTTAAGTTGCTTTGTAATT
Found at i:9341310 original size:44 final size:44
Alignment explanation
Indices: 9341262--9341375 Score: 147
Period size: 44 Copynumber: 2.6 Consensus size: 44
9341252 ACCAGTATGG
* * *
9341262 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
* *
9341306 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCTAATACAT
1 GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
* * * *
9341350 GAAGGCAATATCTTCTTTCTTCGATC
1 GAAGACAAGATCTGCTCTCTTCGATC
9341376 GATTCCACTA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
Found at i:9341530 original size:44 final size:44
Alignment explanation
Indices: 9341461--9342184 Score: 259
Period size: 44 Copynumber: 16.6 Consensus size: 44
9341451 ACCATCTTTG
* * **
9341461 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
9341505 ATCTATTCCACTGTTGCCCATGGAGAT--G----G-AA--TTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * * * * ** *
9341540 ATGTACTCCACTG-TAACCTCATGGAGGTAAAATTTGCCATCTTCG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * **
9341585 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
9341629 ATCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** **
9341672 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCCATCTTTG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * * **
9341717 ATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
9341761 ATCTATTCCACTGCTGCTCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * *
9341804 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCT-ATCCTTC-
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTG-TAAT-CTTCA
* * ** *
9341849 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
9341893 ATCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
9341936 ATGTACTCCACT-ATAACCTCAGGGAGGTAAAATCCGCCATCCTT-G
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAAT-CTTCA
* * **
9341981 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
9342025 ATCTATTCCACTGCTGCCCAAGGAGAT-AGA-AT-TATTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
9342068 ATGTACTCCACT-ATAACCTCAGGGAGGTAA-AGTCCGCCATCCTT-G
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGA-TCTGTAAT-CTTCA
* * **
9342113 ATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* *
9342157 ATCTATTCCACTGCTACCCAGGGAGATA
1 ATCTACTCCACTGCTGCCCAGGGAGATA
9342185 GAATTACTGG
Statistics
Matches: 476, Mismatches: 153, Indels: 102
0.65 0.21 0.14
Matches are distributed among these distances:
34 1 0.00
35 17 0.04
36 8 0.02
37 2 0.00
38 1 0.00
41 12 0.03
42 10 0.02
43 93 0.20
44 242 0.51
45 70 0.15
46 15 0.03
47 4 0.01
48 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
Found at i:9341747 original size:132 final size:132
Alignment explanation
Indices: 9341391--9342372 Score: 1566
Period size: 132 Copynumber: 7.5 Consensus size: 132
9341381 CACTACCGAT
* * * *
9341391 CAGGGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAAACCACCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
9341456 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9341521 CC
131 CC
* * * **
9341523 CATGGAGAT-GGA--A-----TTCAATGTACTCCACTGTAACCTCATGGAGGTAAAATTTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
9341580 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9341645 CC
131 CC
9341647 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
9341712 CTTTGATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
*
9341777 CT
131 CC
*
9341779 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCTAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * *
9341844 CCTTCATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9341909 CC
131 CC
*
9341911 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
9341976 CCTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9342041 CC
131 CC
* * * *
9342043 CAAGGAGATAGAATTATTGGCTTCAATGTACTCCACTATAACCTCAGGGAGGTAAAGTCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * * *
9342108 CCTTGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTA
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9342173 CC
131 CC
* * *
9342175 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAAGGAGGTAAAATCCACTAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * * * * *
9342240 ATTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTTAATTTATTCTACTACTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
9342305 CC
131 CC
* *
9342307 TAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
9342372 C
66 C
9342373 AACCTGCTTC
Statistics
Matches: 784, Mismatches: 58, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
124 111 0.14
125 2 0.00
127 1 0.00
129 1 0.00
131 2 0.00
132 667 0.85
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
CC
Found at i:9350548 original size:9 final size:9
Alignment explanation
Indices: 9350536--9350569 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
9350526 AAACGAAAGG
*
9350536 AAAAAAAGA
1 AAAAAAACA
9350545 AAAAAAACA
1 AAAAAAACA
9350554 AAAAAAACA
1 AAAAAAACA
9350563 AAAAAAA
1 AAAAAAA
9350570 ACAGAGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.91, C:0.06, G:0.03, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:9350571 original size:10 final size:10
Alignment explanation
Indices: 9350544--9350572 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
9350534 GGAAAAAAAG
9350544 AAAAAAAAC-
1 AAAAAAAACA
9350553 AAAAAAAACA
1 AAAAAAAACA
9350563 AAAAAAAACA
1 AAAAAAAACA
9350573 GAGAGCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:9357250 original size:3 final size:3
Alignment explanation
Indices: 9357242--9357279 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
9357232 TAAGAGTAAA
9357242 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
9357280 AGGAATACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9360564 original size:12 final size:12
Alignment explanation
Indices: 9360547--9360582 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
9360537 TATATATTTT
*
9360547 TAAAAATTTATA
1 TAAAAATTAATA
*
9360559 TAAAAAATAATA
1 TAAAAATTAATA
9360571 TAAAAATTAATA
1 TAAAAATTAATA
9360583 CGGGTGGGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAAATTAATA
Found at i:9367732 original size:20 final size:20
Alignment explanation
Indices: 9367677--9367733 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
9367667 GATTAATGGT
* *
9367677 ATAATATAATAATGATAAT-A
1 ATAATAAAATAATTA-AATAA
*
9367697 ATATTAAAATAATTAAATAA
1 ATAATAAAATAATTAAATAA
*
9367717 ATAATAAAATAGTTAAA
1 ATAATAAAATAATTAAA
9367734 ATTGTAACAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 3 0.10
20 28 0.90
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
ATAATAAAATAATTAAATAA
Found at i:9368202 original size:5 final size:5
Alignment explanation
Indices: 9368194--9368266 Score: 110
Period size: 5 Copynumber: 14.6 Consensus size: 5
9368184 TATTTTATTT
* *
9368194 CATTC CATTC CATTC CATTC CATAC CATTT CATTC CATTC CATTC CATTC
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC
* *
9368244 CATTC CATAC CATTT CATTC CAT
1 CATTC CATTC CATTC CATTC CAT
9368267 GAAGCATTCA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.23, C:0.37, G:0.00, T:0.40
Consensus pattern (5 bp):
CATTC
Found at i:9371490 original size:27 final size:28
Alignment explanation
Indices: 9371455--9371507 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
9371445 TCGAAAGAGG
9371455 AAAAGAAAAACT-AAAAAAAAAGTAAAA
1 AAAAGAAAAACTCAAAAAAAAAGTAAAA
* * *
9371482 AAAATAAAAACTCAAGAACAAAGTAA
1 AAAAGAAAAACTCAAAAAAAAAGTAA
9371508 TAGGAACGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.75, C:0.08, G:0.08, T:0.09
Consensus pattern (28 bp):
AAAAGAAAAACTCAAAAAAAAAGTAAAA
Found at i:9372035 original size:16 final size:15
Alignment explanation
Indices: 9372009--9372038 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9371999 ATCTATTATT
9372009 TTTATTATATATATG
1 TTTATTATATATATG
9372024 TTTATGTATATATAT
1 TTTAT-TATATATAT
9372039 AAAGACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTATTATATATATG
Found at i:9372157 original size:35 final size:35
Alignment explanation
Indices: 9372113--9372191 Score: 149
Period size: 35 Copynumber: 2.2 Consensus size: 35
9372103 CTAAATTAAC
9372113 TTTATAAATAATTATAATTTAACTTAGAATTATTAG
1 TTTA-AAATAATTATAATTTAACTTAGAATTATTAG
9372149 TTTAAAATAATTATAATTTAACTTAGAATTATTAG
1 TTTAAAATAATTATAATTTAACTTAGAATTATTAG
9372184 TTTAAAAT
1 TTTAAAAT
9372192 GTTATGCTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 39 0.91
36 4 0.09
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.47
Consensus pattern (35 bp):
TTTAAAATAATTATAATTTAACTTAGAATTATTAG
Found at i:9378423 original size:45 final size:44
Alignment explanation
Indices: 9378285--9378428 Score: 150
Period size: 45 Copynumber: 3.2 Consensus size: 44
9378275 ATTAATGAAA
* *
9378285 ATAAAGGTGATTGCTATGTGCTGATTTCACTGGATACCAATGGTT
1 ATAAAGGTGATTGCTATGTGCTGATTTCACTGG-TACCATTGATT
* * *
9378330 ATATAA-GTGATTGCTATGTGCTGAATTCACCCT-GTACCATTAAGT
1 ATA-AAGGTGATTGCTATGTGCTGATTTCA--CTGGTACCATTGATT
*
9378375 ATAAAGGT-AGTTGCTATGTGCTGATTTCACTGAGTACTATTGATT
1 ATAAAGGTGA-TTGCTATGTGCTGATTTCACTG-GTACCATTGATT
*
9378420 ATAAGGGTG
1 ATAAAGGTG
9378429 GTGTTGTGTG
Statistics
Matches: 81, Mismatches: 10, Indels: 15
0.76 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 3 0.04
45 71 0.88
46 3 0.04
47 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (44 bp):
ATAAAGGTGATTGCTATGTGCTGATTTCACTGGTACCATTGATT
Found at i:9383751 original size:50 final size:47
Alignment explanation
Indices: 9383692--9383868 Score: 212
Period size: 47 Copynumber: 3.7 Consensus size: 47
9383682 CAGTGAGTGT
9383692 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGACATAGGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GACAT--GAGA
* * *
9383742 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGAGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACATGAGA
* * * *
9383789 GCCAGAGTAAGGCCATGTCTGGGACATGGCATCGGCATCGATATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGACATGAGA
* * *
9383837 TCCCA-TGTAAGACCATATCTGGGATATGGCAT
1 -GCCAGTGTAAGACCATGTCTGGGACATGGCAT
9383869 TGGCGTCCTA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
47 37 0.33
48 30 0.27
49 7 0.06
50 37 0.33
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.20
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACATGAGA
Found at i:9384926 original size:73 final size:73
Alignment explanation
Indices: 9384791--9385035 Score: 339
Period size: 73 Copynumber: 3.4 Consensus size: 73
9384781 AAAATAAGCA
* ** * *
9384791 TTAGCGGCGTTTTTGAGAAAGCGCAAC-AAAAAACCTAAGCCCAACAACGCCGTTTCCCGAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTT
9384855 TCGGGGAT
66 TCGGGGAT
* ** * * *
9384863 TTAGCGACGTTTCCAAGAAAGCGTCGCAAAAAAACCTAAGCCTAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTT
9384928 TCGGGGAT
66 TCGGGGAT
** * * *
9384936 TTAGCGGCGTTTTTGGGAAAGTGCCGCAAAAAAATCTAAGCCCAACAACGCCGTTTTCTAAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTT
9385001 TCGGGGAT
66 TCGGGGAT
9385009 TTAGCGGCGTTTTTAAGAAAGCGCCGC
1 TTAGCGGCGTTTTTAAGAAAGCGCCGC
9385036 TAATGCTCAG
Statistics
Matches: 147, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
72 20 0.14
73 127 0.86
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (73 bp):
TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTT
TCGGGGAT
Found at i:9385135 original size:114 final size:114
Alignment explanation
Indices: 9384935--9385493 Score: 879
Period size: 114 Copynumber: 4.9 Consensus size: 114
9384925 CTTTCGGGGA
* * * * *
9384935 TTTAGCGGCGTTTTTGGGAAAGTGCCGCAAAAAAATCTAAGCCCAACAACGCCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
9385000 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * * * *
9385049 TTTAGCGGCGCTTTTAGGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCATTTTCTAAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
9385114 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * * *
9385163 TTTAGCGGTGTTTTTAGGGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTTTGAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
9385228 TTCGGGGATTTAGTGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * *
9385277 TTTAGCAGCGTTTTTGGGAAAGCGCCGCAAAAAATCCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
9385342 TTCGGGGATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* *
9385391 TTTAGCGGCGTTTTT-GAGAAAACACCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
1 TTTAGCGGCGTTTTTAG-GAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
* * *
9385454 TTTTGAGGATTTAGCGGCGTTTTTAAAAAAGCGCCGCTAA
65 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
9385494 AAATATTTTA
Statistics
Matches: 411, Mismatches: 33, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
113 71 0.17
114 340 0.83
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:9387035 original size:106 final size:105
Alignment explanation
Indices: 9386855--9387048 Score: 271
Period size: 106 Copynumber: 1.8 Consensus size: 105
9386845 GAATTTTTAT
* * * **
9386855 AAAACGCCGCAAAAATAAATAAATTTATAAAAAATAAAATAAAAAATTTTTAGTATAGTAAAACA
1 AAAACGCCGCAAAAATAAATAAATTTATAAAAAACAAAATAAAAAATTTGTAGAATAACAAAACA
* *
9386920 GCGTCATTTTGCTCAAAATGAAATAGTGGCGGTTTTATAA
66 GCATCATTTTGCTCAAAAAGAAATAGTGGCGGTTTTATAA
* *
9386960 AAAACGCCGCAAAAAATAAATTAATTTATAAAAAACAAAATAAAAAATTTGTAGAATAACAAAAT
1 AAAACGCCGC-AAAAATAAATAAATTTATAAAAAACAAAATAAAAAATTTGTAGAATAACAAAAC
* * *
9387025 GGCATTATTTTGTTCAAAAAGAAA
65 AGCATCATTTTGCTCAAAAAGAAA
9387049 AAAAAACTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
105 10 0.13
106 66 0.87
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (105 bp):
AAAACGCCGCAAAAATAAATAAATTTATAAAAAACAAAATAAAAAATTTGTAGAATAACAAAACA
GCATCATTTTGCTCAAAAAGAAATAGTGGCGGTTTTATAA
Done.