Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 53 of 185
Found at i:15058349 original size:44 final size:43
Alignment explanation
Indices: 15058280--15058399 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 43
15058270 TCGTTTTAAT
* ** *
15058280 CTGCTCCATTGCAACTTCATTGAGATAGGATTAATTGCTTCAAC
1 CTGCTCCACTGCAACTTCAGAGAGATAGG-TTAATTACTTCAAC
* **
15058324 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTACTTCAAC
1 CTGCTCCACTGCAACTTCAGAGAGAT-AGGTTAATTACTTCAAC
*
15058368 CTGCTCTACTGCAACTTCAGAGAGATAAGGTT
1 CTGCTCCACTGCAACTTCAGAGAGAT-AGGTT
15058400 CGTGGCTTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 64 0.96
45 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (43 bp):
CTGCTCCACTGCAACTTCAGAGAGATAGGTTAATTACTTCAAC
Found at i:15058426 original size:44 final size:44
Alignment explanation
Indices: 15058317--15058440 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 44
15058307 GGATTAATTG
* *
15058317 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTTA
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGA
* * *
15058361 CTTCAACCTGCTCTACTGCAACTTCAGAGAGATAAGGTTCGTGG
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGA
** * * * *
15058405 CTTTGATCTGCCCCACCGCAACTTCAGGGGGATAAG
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
15058441 ACTTGTTTTC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGA
Found at i:15058426 original size:88 final size:89
Alignment explanation
Indices: 15058324--15058485 Score: 209
Period size: 89 Copynumber: 1.8 Consensus size: 89
15058314 TTGCTTCAAC
* * ** *
15058324 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TTACTTCAACCTGCTCTACTGCAACTTCAG
1 CTGCCCCACCGCAACTTCAGGGAGATAAGACTTGTTTACTTCAACCTGCTCGACTGCAACTTCAG
15058388 AGAGATAAGGTTCGTGGCTTTGAT
66 AGAGATAAGGTTCGTGGCTTTGAT
* * ** * *
15058412 CTGCCCCACCGCAACTTCAGGGGGATAAGACTTGTTTTCTTCAGTCTGTTCGACTGTAACTTCAG
1 CTGCCCCACCGCAACTTCAGGGAGATAAGACTTGTTTACTTCAACCTGCTCGACTGCAACTTCAG
*
15058477 GGAGATAAG
66 AGAGATAAG
15058486 ACTTGATATG
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
88 29 0.48
89 32 0.52
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (89 bp):
CTGCCCCACCGCAACTTCAGGGAGATAAGACTTGTTTACTTCAACCTGCTCGACTGCAACTTCAG
AGAGATAAGGTTCGTGGCTTTGAT
Found at i:15058689 original size:50 final size:50
Alignment explanation
Indices: 15058601--15059178 Score: 401
Period size: 50 Copynumber: 11.6 Consensus size: 50
15058591 AGTCTAATTA
* ** * *
15058601 ACTGCAATGTC-GAGGAAGTAAGATTCGCTATTCTAGCTTCAATTTGTTCC
1 ACTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * ** * **
15058651 ACTACATTGCCAGGGAAGTAAAATTCGCTGTTGTAGCTTTAAAGTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * *
15058701 ATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGTTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * **
15058751 ACTGC-ATCGCCAGGGAAGTAAGATTTGCCGTTGTGGCTTCAATCTTTTTA
1 ACTGCAAT-GCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * *
15058801 ATTCCAATGTC-GAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCC
1 ACTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * * **
15058851 ACTGTACTGCTAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * *
15058901 ATTGCAATGTC-GAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCC
1 ACTGCAATGCCAG-GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
** * * * **
15058951 ACTGCACCGCCAGGGAAGTAAGATTCGCCATTGTAGCTTCAATATTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * * *
15059001 ATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAACTTCAATCTATTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* ** * *
15059051 ACTACACCGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* * * * * * *
15059101 ACTAC-ATCGCCAGGGAGGTAAGGTTCACCGTTGTAGATTCAATCTATTTC
1 ACTGCAAT-GCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
* ** *
15059151 ACTGTAATGCCAAAGAAGTAGGATTCGC
1 ACTGCAATGCCAGGGAAGTAAGATTCGC
15059179 TGCCCACAGA
Statistics
Matches: 393, Mismatches: 126, Indels: 18
0.73 0.23 0.03
Matches are distributed among these distances:
49 4 0.01
50 382 0.97
51 7 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (50 bp):
ACTGCAATGCCAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCC
Found at i:15059093 original size:100 final size:100
Alignment explanation
Indices: 15058598--15059093 Score: 652
Period size: 100 Copynumber: 5.0 Consensus size: 100
15058588 TTTAGTCTAA
* * * * * * **
15058598 TTAACTGCAATGTCGAGGAAGTAAGATTCGCTATTCTAGCTTCAATTTGTTCCACTACATTGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* * *
15058663 GGGAAGTAAAATTCGCTGTTGTAGCTTTAA-AGTTT
66 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATA-TTT
* * *
15058698 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGTTTCAATCTGTTCCACTGCATCGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* * *
15058763 GGGAAGTAAGATTTGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATATTT
* * * * * * *
15058798 TTAATTCCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGTACTGCTA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* *
15058863 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTT
66 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATATTT
* * *
15058898 TTAATTGCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGCACCGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
*
15058963 GGGAAGTAAGATTCGCCATTGTAGCTTCAATATTT
66 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATATTT
* * * *
15058998 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAACTTCAATCTATTCCACTACACCGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
* *
15059063 GGGAAGTAAGATTCACTGTTGTAGCTTCAAT
66 GGGAAGTAAGATTCGCCGTTGTAGCTTCAAT
15059094 CTGTTCCACT
Statistics
Matches: 351, Mismatches: 44, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
100 351 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (100 bp):
TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATATTT
Found at i:15059178 original size:200 final size:198
Alignment explanation
Indices: 15058598--15059178 Score: 633
Period size: 200 Copynumber: 2.9 Consensus size: 198
15058588 TTTAGTCTAA
* * * * * *
15058598 TTAACTGCAATGTCGAGGAAGTAAGATTCGCTATTCTAGCTTCAATTTGTTCCACTACATTGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCA
* * ** *
15058663 GGGAAGTAAAATTCGCTGTTGTAGCTTTAAAGTTTTTAATTGCAATGTCGGGGAAGCAAGATTCG
66 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTC-GGGAAGCAAGATTCA
* * * * * *
15058728 CTGTTGTAGTTTCAATCTGTTCCACTGCATCGCCAGGGAAGTAAGATTTGCCGTTGTGGCTTCAA
130 CCGTTGTAGATTCAATCTGTTCCACTGAAT-GCCAGGGAAGTAAGATTCGCCATTGTAGCTTCAA
*
15058793 TCTTT
194 TATTT
* * * * ** *
15058798 TTAATTCCAATGTCGAGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTCCCACTGTACTGCTA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCA
* * *
15058863 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAATTGCAATGTCGAGGAAGCAAGATTCA
66 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCG-GGAAGCAAGATTCA
* * **
15058928 CCGTTGTAGCTTCAATCTGTCCCACTGCACCGCCAGGGAAGTAAGATTCGCCATTGTAGCTTCAA
130 CCGTTGTAGATTCAATCTGTTCCACTG-AATGCCAGGGAAGTAAGATTCGCCATTGTAGCTTCAA
15058993 TATTT
194 TATTT
* * * *
15058998 TTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAACTTCAATCTATTCCACTACACCGCCA
1 TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCA
* * ** * * * * * *
15059063 GGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTAC-ATCGCCAGGGAGGTAAGGTTC
66 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAATTGCAAT-GTC-GGGAAGCAAGATTC
* * ** *
15059127 ACCGTTGTAGATTCAATCTATTTCACTGTAATGCCAAAGAAGTAGGATTCGC
129 ACCGTTGTAGATTCAATCTGTTCCACTG-AATGCCAGGGAAGTAAGATTCGC
15059179 TGCCCACAGA
Statistics
Matches: 313, Mismatches: 64, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
199 3 0.01
200 309 0.99
201 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (198 bp):
TTAATTGCAATGTCGAGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCA
GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCGGGAAGCAAGATTCAC
CGTTGTAGATTCAATCTGTTCCACTGAATGCCAGGGAAGTAAGATTCGCCATTGTAGCTTCAATA
TTT
Found at i:15060172 original size:108 final size:108
Alignment explanation
Indices: 15059978--15060199 Score: 345
Period size: 108 Copynumber: 2.1 Consensus size: 108
15059968 GAAAAATGCT
* *
15059978 TGAAAAATATTATCAAAATGGACAAGATGAAATTTCATTGAGAACAAAGCTCGCAATGAATAAAT
1 TGAAAAAGATTATCAAAATGGACAAGATGAAATTTCATTGAGAACAAAGCTCGAAATGAATAAAT
* * *
15060043 TAATCAAGATAGCAAATTTTGCTAAGGTACGAAATGAATAAGA
66 TAATCAAGATAGCAAACTTTGCTAAGATACGAAATAAATAAGA
* * * ** *
15060086 TGAAAAAGATTATCACAATGGACAAGATGGAATTTTATTGAGAGTAAAGCTTGAAATGAATAAAT
1 TGAAAAAGATTATCAAAATGGACAAGATGAAATTTCATTGAGAACAAAGCTCGAAATGAATAAAT
15060151 TAATCAAGATAGCAAACTTTGCTAAGATACGAAATAAATAAGA
66 TAATCAAGATAGCAAACTTTGCTAAGATACGAAATAAATAAGA
15060194 TGAAAA
1 TGAAAA
15060200 CAGGTGCCCC
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.25
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAGATGAAATTTCATTGAGAACAAAGCTCGAAATGAATAAAT
TAATCAAGATAGCAAACTTTGCTAAGATACGAAATAAATAAGA
Found at i:15060873 original size:10 final size:9
Alignment explanation
Indices: 15060852--15060885 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
15060842 CCGGTAGAGG
*
15060852 TTTTTAGGT
1 TTTTTTGGT
15060861 TTTTTTGGT
1 TTTTTTGGT
15060870 TTTTTTGGT
1 TTTTTTGGT
15060879 TTTTTTG
1 TTTTTTG
15060886 CGCCATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.03, C:0.00, G:0.21, T:0.76
Consensus pattern (9 bp):
TTTTTTGGT
Found at i:15062224 original size:29 final size:29
Alignment explanation
Indices: 15062167--15062227 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
15062157 GTATGTACTG
* *
15062167 AAATGTAATGGAAAAGATGCATGCAAAAA
1 AAATGTAATGCAAAAGATGAATGCAAAAA
*
15062196 AAATGTAATGCAAATGCATGAATGCAAAAA
1 AAATGTAATGCAAAAG-ATGAATGCAAAAA
15062226 AA
1 AA
15062228 GAGGTGTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.56, C:0.08, G:0.18, T:0.18
Consensus pattern (29 bp):
AAATGTAATGCAAAAGATGAATGCAAAAA
Found at i:15064331 original size:4 final size:4
Alignment explanation
Indices: 15064322--15064350 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
15064312 ATAATAAAAC
15064322 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
15064351 AGAGATGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:15064849 original size:3 final size:3
Alignment explanation
Indices: 15064833--15064900 Score: 52
Period size: 3 Copynumber: 22.7 Consensus size: 3
15064823 TAAATGAGTA
* * * *
15064833 AAT AAT AGT TAT AAT AAT AAT AAT AAT ACAA AACT AAT AGT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA-T AAT AAT AAT AAT
15064879 -AT AAT AAT -AT AAT AAT GAAT AA
1 AAT AAT AAT AAT AAT AAT -AAT AA
15064901 ATAAATATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
2 5 0.10
3 39 0.76
4 7 0.14
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15066720 original size:41 final size:42
Alignment explanation
Indices: 15066636--15066739 Score: 147
Period size: 42 Copynumber: 2.5 Consensus size: 42
15066626 CAAAAACGCT
* * * *
15066636 GCTAAAGACCATGTTGTTTAGCGGCGTTTTTTTCTAAGCGCC
1 GCTAAAGAACATGATCTTTAGCAGCGTTTTTTTCTAAGCGCC
*
15066678 GCTAAAGAACATGGTCTTTAGCAGCGTTTTTTT-TAAGCGCC
1 GCTAAAGAACATGATCTTTAGCAGCGTTTTTTTCTAAGCGCC
*
15066719 GCTAAAGAACATTATCTTTAG
1 GCTAAAGAACATGATCTTTAG
15066740 TAGTGCTTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
41 27 0.48
42 29 0.52
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (42 bp):
GCTAAAGAACATGATCTTTAGCAGCGTTTTTTTCTAAGCGCC
Found at i:15067106 original size:21 final size:21
Alignment explanation
Indices: 15067082--15067158 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
15067072 TTTCTCTCGC
*
15067082 TGCAGCCTCTGCTTCCCTCAT
1 TGCAGCCGCTGCTTCCCTCAT
15067103 TGCAGCCGCTGCTTCCCTCAT
1 TGCAGCCGCTGCTTCCCTCAT
*
15067124 TGCAGCCGCTGCTTCCCTCGT
1 TGCAGCCGCTGCTTCCCTCAT
* *
15067145 TGCCGCCTCTGCTT
1 TGCAGCCGCTGCTT
15067159 TAAGTTGTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.06, C:0.43, G:0.19, T:0.31
Consensus pattern (21 bp):
TGCAGCCGCTGCTTCCCTCAT
Found at i:15072635 original size:16 final size:16
Alignment explanation
Indices: 15072614--15073218 Score: 213
Period size: 16 Copynumber: 37.4 Consensus size: 16
15072604 GATTTAGGAA
15072614 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
*
15072630 TAAGTTATGTAAGTTGTG
1 TAAGTTATGT-A-TTATG
* *
15072648 TAAGTTGTGTAAGTTGTG
1 TAAGTTATGT-A-TTATG
*
15072666 T-A-TTATGAAACTTATG
1 TAAGTTATG-TA-TTATG
* *
15072682 TAAATTATGTCTTATG
1 TAAGTTATGTATTATG
15072698 TAAGTTATGTAAATTATG
1 TAAGTTATGT--ATTATG
15072716 T-A-TTATGTAAGTTATG
1 TAAGTTATGT-A-TTATG
*
15072732 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
15072748 TAAGTTATGTAAGTTGTG
1 TAAGTTATGT-A-TTATG
* **
15072766 T-A-TTATTTACACATG
1 TAAGTTATGTA-TTATG
*
15072781 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
* * *
15072797 CAAGTCATGTAGGCTATG
1 TAAGTTATGTA--TTATG
*
15072815 T-A-TTATGTAAATTACAAGGG
1 TAAGTTATGT--ATT---A-TG
15072835 TAAG-T-TGT-TTAGTGG
1 TAAGTTATGTATTA-T-G
15072850 TAAGTATAAATG-AGTTATG
1 TAAGT-T--ATGTA-TTATG
15072869 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
*
15072885 CAAGTTATGTA--A-G
1 TAAGTTATGTATTATG
** ** *
15072898 TCCGACAAG-A-TATG
1 TAAGTTATGTATTATG
*
15072912 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
15072928 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
*
15072944 TAAGTTAAGTATTATG
1 TAAGTTATGTATTATG
15072960 T-A---A-G--TTATG
1 TAAGTTATGTATTATG
*
15072969 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
15072985 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
15073001 TAAGTTATGTAAGTT-TG
1 TAAGTTATGT-A-TTATG
*
15073018 ACAAGTTATGTATAATAT-
1 -TAAGTTATGTAT--TATG
15073036 TAA-TTA---ATTATG
1 TAAGTTATGTATTATG
15073048 TAAGTTATGTATTATATTAATG
1 TAAGTTATG-----TATT-ATG
*
15073070 TCAGTTATGTATTATG
1 TAAGTTATGTATTATG
*
15073086 TAAGTTATTTAAGTTATG
1 TAAGTTATGT-A-TTATG
* *
15073104 TAAGTTGTTTATTATG
1 TAAGTTATGTATTATG
* *
15073120 TGAGTTATGCAATTTATG
1 TAAGTTATG-TA-TTATG
* * *
15073138 TAGGCTATATATTATG
1 TAAGTTATGTATTATG
15073154 TAAG---T-TATTATG
1 TAAGTTATGTATTATG
*
15073166 TTA-TTATGTAAGTTAT-
1 TAAGTTATGT-A-TTATG
* *
15073182 TATGTTAT-TATGATG
1 TAAGTTATGTATTATG
15073197 TAAGTTATGTATTATG
1 TAAGTTATGTATTATG
15073213 TAAGTT
1 TAAGTT
15073219 TATATATAAG
Statistics
Matches: 445, Mismatches: 70, Indels: 148
0.67 0.11 0.22
Matches are distributed among these distances:
9 6 0.01
10 1 0.00
11 4 0.01
12 14 0.03
13 11 0.02
14 12 0.03
15 22 0.05
16 215 0.48
17 40 0.09
18 85 0.19
19 8 0.02
20 8 0.02
21 8 0.02
22 11 0.02
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.46
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:15072639 original size:9 final size:9
Alignment explanation
Indices: 15072614--15073218 Score: 248
Period size: 9 Copynumber: 70.7 Consensus size: 9
15072604 GATTTAGGAA
15072614 TAAGTTATG
1 TAAGTTATG
15072623 T-A-TTATG
1 TAAGTTATG
15072630 TAAGTTATG
1 TAAGTTATG
*
15072639 TAAGTTGTG
1 TAAGTTATG
*
15072648 TAAGTTGTG
1 TAAGTTATG
*
15072657 TAAGTTGTG
1 TAAGTTATG
15072666 T-A-TTATG
1 TAAGTTATG
* *
15072673 AAACTTATG
1 TAAGTTATG
*
15072682 TAAATTATG
1 TAAGTTATG
*
15072691 T--CTTATG
1 TAAGTTATG
15072698 TAAGTTATG
1 TAAGTTATG
*
15072707 TAAATTATG
1 TAAGTTATG
15072716 T-A-TTATG
1 TAAGTTATG
15072723 TAAGTTATG
1 TAAGTTATG
*
15072732 TAAGTTGTG
1 TAAGTTATG
15072741 T-A-TTATG
1 TAAGTTATG
15072748 TAAGTTATG
1 TAAGTTATG
*
15072757 TAAGTTGTG
1 TAAGTTATG
*
15072766 T-A-TTATT
1 TAAGTTATG
*
15072773 TACA--CATG
1 TA-AGTTATG
*
15072781 TAAGTTGTG
1 TAAGTTATG
15072790 T-A-TTATG
1 TAAGTTATG
* *
15072797 CAAGTCATG
1 TAAGTTATG
* *
15072806 TAGGCTATG
1 TAAGTTATG
15072815 T-A-TTATG
1 TAAGTTATG
* *
15072822 TAAATTACAAGGG
1 TAAGTT---A-TG
*
15072835 TAAGTTGT-
1 TAAGTTATG
* *
15072843 TTAG-T-GG
1 TAAGTTATG
**
15072850 TAAGTATAAA
1 TAAGT-TATG
*
15072860 TGAGTTATG
1 TAAGTTATG
15072869 TAAGTTATG
1 TAAGTTATG
15072878 T-A-TTATG
1 TAAGTTATG
*
15072885 CAAGTTATG
1 TAAGTTATG
**
15072894 TAAG-TCCG
1 TAAGTTATG
* *
15072902 ACAAGATATG
1 -TAAGTTATG
*
15072912 TAAGTTGTG
1 TAAGTTATG
15072921 T-A-TTATG
1 TAAGTTATG
15072928 TAAGTTATG
1 TAAGTTATG
15072937 T-A-TTATG
1 TAAGTTATG
*
15072944 TAAGTTAAG
1 TAAGTTATG
15072953 T-A-TTATG
1 TAAGTTATG
15072960 TAAGTTATG
1 TAAGTTATG
*
15072969 TAAGTTGTG
1 TAAGTTATG
15072978 T-A-TTATG
1 TAAGTTATG
15072985 TAAGTTATG
1 TAAGTTATG
15072994 T-A-TTATG
1 TAAGTTATG
15073001 TAAGTTATG
1 TAAGTTATG
15073010 TAAGTT-TG
1 TAAGTTATG
*
15073018 ACAAGTTATG
1 -TAAGTTATG
*
15073028 TATAATATTAAT-
1 --TAA-GTT-ATG
15073040 TAA-TTATG
1 TAAGTTATG
15073048 TAAGTTATG
1 TAAGTTATG
*
15073057 TATTATATTAATG
1 TA--A-GTT-ATG
*
15073070 TCAGTTATG
1 TAAGTTATG
15073079 T-A-TTATG
1 TAAGTTATG
*
15073086 TAAGTTATT
1 TAAGTTATG
15073095 TAAGTTATG
1 TAAGTTATG
*
15073104 TAAGTTGT-
1 TAAGTTATG
*
15073112 TTA-TTATG
1 TAAGTTATG
*
15073120 TGAGTTATG
1 TAAGTTATG
* *
15073129 CAATTTATG
1 TAAGTTATG
* * *
15073138 TAGGCTATA
1 TAAGTTATG
15073147 T-A-TTATG
1 TAAGTTATG
15073154 TAAGTTAT-
1 TAAGTTATG
*
15073162 TATGTTATTATG
1 TAAG---TTATG
15073174 TAAGTTAT-
1 TAAGTTATG
*
15073182 TATGTTAT-
1 TAAGTTATG
*
15073190 T-A-TGATG
1 TAAGTTATG
15073197 TAAGTTATG
1 TAAGTTATG
15073206 T-A-TTATG
1 TAAGTTATG
15073213 TAAGTT
1 TAAGTT
15073219 TATATATAAG
Statistics
Matches: 447, Mismatches: 83, Indels: 132
0.68 0.13 0.20
Matches are distributed among these distances:
6 3 0.01
7 99 0.22
8 61 0.14
9 242 0.54
10 13 0.03
11 9 0.02
12 8 0.02
13 12 0.03
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:15072643 original size:25 final size:25
Alignment explanation
Indices: 15072619--15072767 Score: 71
Period size: 25 Copynumber: 5.9 Consensus size: 25
15072609 AGGAATAAGT
15072619 TATGTATTATGTAAGTTATGTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
* * *
15072644 TGTGTAAGTTGTGTAAGTTGTGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
15072669 TATGAAACTTATGTAAATTATGT--CT
1 TATG-TA-TTATGTAAGTTATGTAAGT
*
15072694 TATGTAAGTTATGTAAATTATGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
*
15072719 TATGTAAGTTATGTAAGTTGTGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
*
15072744 TATGTAAGTTATGTAAGTTGTGTA
1 TATGT-A-TTATGTAAGTTATGTA
15072768 TTATTTACAC
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
25 89 0.86
26 2 0.02
27 13 0.12
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.47
Consensus pattern (25 bp):
TATGTATTATGTAAGTTATGTAAGT
Found at i:15072709 original size:50 final size:50
Alignment explanation
Indices: 15072625--15072771 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 50
15072615 AAGTTATGTA
* * *
15072625 TTATGTAAGTTATGTAAGTTGTGTAAGTTGTGTAAGTTGTGTATTATGAAAC
1 TTATGTAAATTATGT-A-TTATGTAAGTTATGTAAGTTGTGTATTATGAAAC
* * * * *
15072677 TTATGTAAATTATGTCTTATGTAAGTTATGTAAATTATGTATTATGTAAG
1 TTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGAAAC
* *
15072727 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTGTGTATTAT
1 TTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTATTAT
15072772 TTACACATGT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
50 68 0.83
52 14 0.17
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.48
Consensus pattern (50 bp):
TTATGTAAATTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGAAAC
Found at i:15072890 original size:25 final size:24
Alignment explanation
Indices: 15072862--15073030 Score: 93
Period size: 25 Copynumber: 6.8 Consensus size: 24
15072852 AGTATAAATG
15072862 AGTTATGTAAGTTATGTATTATGCA
1 AGTTATGTAAGTTATGTATTATG-A
* *
15072887 AGTTATGTAAGTCCGACAAG-A-TATGTA
1 AGTTATGTAAGT----TATGTATTATG-A
* *
15072914 AGTTGTGT-A-TTATGTAAGTTATGT
1 AGTTATGTAAGTTATGT-A-TTATGA
*
15072938 A-TTATGTAAGTTAAGTATTATGTA
1 AGTTATGTAAGTTATGTATTATG-A
*
15072962 AGTTATGTAAGTTGTGTATTATGTA
1 AGTTATGTAAGTTATGTATTATG-A
15072987 AGTTATGT-A-TTATGTAAGTTATGTA
1 AGTTATGTAAGTTATGT-A-TTATG-A
*
15073012 AGTT-TGACAAGTTATGTAT
1 AGTTATG-TAAGTTATGTAT
15073031 AATATTAATT
Statistics
Matches: 113, Mismatches: 14, Indels: 34
0.70 0.09 0.21
Matches are distributed among these distances:
21 2 0.02
23 16 0.14
24 8 0.07
25 63 0.56
26 3 0.03
27 18 0.16
28 1 0.01
29 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (24 bp):
AGTTATGTAAGTTATGTATTATGA
Found at i:15073067 original size:25 final size:25
Alignment explanation
Indices: 15072923--15073105 Score: 112
Period size: 25 Copynumber: 7.6 Consensus size: 25
15072913 AAGTTGTGTA
15072923 TTATGTAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
*
15072948 TTAAGT-A-TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
15072973 TTGTGT-A-TTATGTAAGTTATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
15072996 TTATGTAAGTTATGTAAGTT-TGACAAG
1 TTATGTAAGTTATGT-A-TTATG-TAAG
*
15073023 TTATGT-A--TA-ATATTAAT-TAA-
1 TTATGTAAGTTATGTATT-ATGTAAG
15073043 TTATGTAAGTTATGTATTA--T-A-
1 TTATGTAAGTTATGTATTATGTAAG
*
15073064 TTAATGTCAGTTATGTATTATGTAAG
1 TT-ATGTAAGTTATGTATTATGTAAG
*
15073090 TTATTTAAGTTATGTA
1 TTATGTAAGTTATGTA
15073106 AGTTGTTTAT
Statistics
Matches: 129, Mismatches: 11, Indels: 36
0.73 0.06 0.20
Matches are distributed among these distances:
20 6 0.05
21 8 0.06
22 18 0.14
23 16 0.12
24 13 0.10
25 58 0.45
26 4 0.03
27 6 0.05
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.48
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:15073164 original size:12 final size:12
Alignment explanation
Indices: 15073147--15073204 Score: 63
Period size: 12 Copynumber: 5.2 Consensus size: 12
15073137 GTAGGCTATA
15073147 TATTATGTAAGT
1 TATTATGTAAGT
15073159 TATTA--T--GT
1 TATTATGTAAGT
15073167 TATTATGTAAGT
1 TATTATGTAAGT
*
15073179 TATTATGTTA-T
1 TATTATGTAAGT
*
15073190 TATGATGTAAGT
1 TATTATGTAAGT
15073202 TAT
1 TAT
15073205 GTATTATGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
8 7 0.18
10 2 0.05
11 9 0.24
12 20 0.53
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (12 bp):
TATTATGTAAGT
Found at i:15073184 original size:23 final size:23
Alignment explanation
Indices: 15073147--15073213 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
15073137 GTAGGCTATA
15073147 TATTATGTAAG---TTATTATGT
1 TATTATGTAAGTTATTATTATGT
*
15073167 TATTATGTAAGTTATTATGT-TAT
1 TATTATGTAAGTTATTAT-TATGT
*
15073190 TATGATGTAAGTTATGTATTATGT
1 TATTATGTAAGTTAT-TATTATGT
15073214 AAGTTTATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 11 0.29
23 21 0.55
24 6 0.16
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (23 bp):
TATTATGTAAGTTATTATTATGT
Found at i:15073332 original size:15 final size:15
Alignment explanation
Indices: 15073297--15073339 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
15073287 AAAGTTTTGA
*
15073297 AAAAATATATAAATT
1 AAAAATATATATATT
**
15073312 TTAAATATATATATT
1 AAAAATATATATATT
*
15073327 AAAAATGTATATA
1 AAAAATATATATA
15073340 AATATTAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
AAAAATATATATATT
Found at i:15073603 original size:69 final size:69
Alignment explanation
Indices: 15073515--15073726 Score: 327
Period size: 69 Copynumber: 3.1 Consensus size: 69
15073505 TGGGGTGATA
* * *
15073515 TATTAAAAATATA-AGTGTTAATATTTAGAAAATAACATTTACAATTATTTTTCAAATTGTAAAA
1 TATTCAAAATATAGA-TGTTAATATTTAGAAAATAACATTTACAATTATTTTTAAAATTATAAAA
15073579 TTTAT
65 TTTAT
* * *
15073584 TATTCCAAATATAGATGTTAATATTTAGAAAATAACATTTACAATCATTTCTAAAATTATAAAAT
1 TATTCAAAATATAGATGTTAATATTTAGAAAATAACATTTACAATTATTTTTAAAATTATAAAAT
15073649 TTAT
66 TTAT
* *
15073653 TATTGAAAATATAGATGTTAATATTTAGAAAATAACATTTACAATTTTTTTTTAAAATTATAAAA
1 TATTCAAAATATAGATGTTAATATTTAGAAAATAACATTTACAA-TTATTTTTAAAATTATAAAA
15073718 TTTAT
65 TTTAT
15073723 TATT
1 TATT
15073727 AATAAAATTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
69 103 0.79
70 27 0.21
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (69 bp):
TATTCAAAATATAGATGTTAATATTTAGAAAATAACATTTACAATTATTTTTAAAATTATAAAAT
TTAT
Found at i:15076605 original size:14 final size:14
Alignment explanation
Indices: 15076586--15076649 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
15076576 ACCCTTAAAT
15076586 CCCTAAATCCTAAC
1 CCCTAAATCCTAAC
15076600 CCCTAAATCACTAA-
1 CCCTAAATC-CTAAC
* * *
15076614 CTCTTAACCCTTAAC
1 CCCTAAATCC-TAAC
* *
15076629 CCCTAACTACTAAC
1 CCCTAAATCCTAAC
15076643 CCCTAAA
1 CCCTAAA
15076650 CCTTAAATCC
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
13 1 0.03
14 28 0.74
15 9 0.24
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAATCCTAAC
Found at i:15076606 original size:22 final size:22
Alignment explanation
Indices: 15076576--15076665 Score: 76
Period size: 21 Copynumber: 4.2 Consensus size: 22
15076566 CCCTAACCCG
*
15076576 ACCCTTAAATCCCTAAATCCTA
1 ACCCCTAAATCCCTAAATCCTA
* * *
15076598 ACCCCTAAATCACTAACTCTTA
1 ACCCCTAAATCCCTAAATCCTA
* * * *
15076620 A-CCCTTAACCCCTAACTACTA
1 ACCCCTAAATCCCTAAATCCTA
* *
15076641 ACCCCTAAA-CCTTAAATCCCA
1 ACCCCTAAATCCCTAAATCCTA
15076662 ACCC
1 ACCC
15076666 TCAAAATTAA
Statistics
Matches: 53, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
21 28 0.53
22 25 0.47
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (22 bp):
ACCCCTAAATCCCTAAATCCTA
Found at i:15076971 original size:14 final size:15
Alignment explanation
Indices: 15076943--15077013 Score: 78
Period size: 15 Copynumber: 4.9 Consensus size: 15
15076933 CTAGTTAATC
15076943 TAAACCTTAAA-CCA
1 TAAACCTTAAACCCA
15076957 TAAA-CTTAAACCCA
1 TAAACCTTAAACCCA
*
15076971 TAAACCCTAAACCCA
1 TAAACCTTAAACCCA
*
15076986 TAAACCCTT-AACACA
1 TAAA-CCTTAAACCCA
15077001 T-AACCTTTAAACC
1 TAAACC-TTAAACC
15077014 TTAAACCCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
13 8 0.17
14 15 0.31
15 22 0.46
16 3 0.06
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAACCTTAAACCCA
Found at i:15076976 original size:8 final size:8
Alignment explanation
Indices: 15076963--15076992 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
15076953 ACCATAAACT
15076963 TAAACCCA
1 TAAACCCA
15076971 TAAACCC-
1 TAAACCCA
15076978 TAAACCCA
1 TAAACCCA
15076986 TAAACCC
1 TAAACCC
15076993 TTAACACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (8 bp):
TAAACCCA
Found at i:15077068 original size:15 final size:15
Alignment explanation
Indices: 15077033--15077071 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
15077023 GGCCTTTAAA
15077033 CCATAAACC-ATAAC
1 CCATAAACCTATAAC
* *
15077047 CCCTAAACCTATAAT
1 CCATAAACCTATAAC
15077062 CCATAAACCT
1 CCATAAACCT
15077072 TAAAATGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAACCTATAAC
Found at i:15077075 original size:22 final size:21
Alignment explanation
Indices: 15077028--15077124 Score: 63
Period size: 21 Copynumber: 4.5 Consensus size: 21
15077018 ACCCCGGCCT
*
15077028 TTAAACCATAAACCATAACCC
1 TTAAACCATAAACCATAAACC
* *
15077049 CTAAACCTATAATCCATAAACC
1 TTAAACC-ATAAACCATAAACC
***
15077071 TTAAAATGGTAACACC-TAAACC
1 TT-AAACCATAA-ACCATAAACC
*
15077093 TTAAACTC-TAAACCATATACC
1 TTAAAC-CATAAACCATAAACC
* *
15077114 CTAAACTATAA
1 TTAAACCATAA
15077125 TGATAATTAA
Statistics
Matches: 57, Mismatches: 13, Indels: 12
0.70 0.16 0.15
Matches are distributed among these distances:
20 3 0.05
21 25 0.44
22 24 0.42
23 5 0.09
ACGTcount: A:0.46, C:0.28, G:0.02, T:0.24
Consensus pattern (21 bp):
TTAAACCATAAACCATAAACC
Found at i:15077583 original size:113 final size:113
Alignment explanation
Indices: 15077300--15077977 Score: 903
Period size: 113 Copynumber: 6.0 Consensus size: 113
15077290 ATTTTAAATC
* *
15077300 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCATAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* * * *
15077365 GTTGGGTTTAGGTTTTTTTGCGGCGCTTTACCAACAACGCCGCT-AAGTC
66 GTTGGGCTTAGG-TTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAG-A
* * *
15077414 CCTGAGAATTAGCGGCGCTTTCTTACAAAACGCCACTAAATCCTCGAAAGCTCAGAAAACGGCGT
1 CCTGAGCATTAGCGGCGCTTTCTTA-AAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGT
* *
15077479 CGTTGGGCTTAAGTTTTTTTGCGGCGC-TTCCCAAAAACGCCACTAAAGA
65 CGTTGGGCTT-AGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
* *
15077528 CTTGAGCATTAGCGGTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* * *
15077593 GTTAGGCTTAGGTTTTTTTGTGGCGCTTTACCAAAAACGCCGCTAAAGA
66 GTTGGGCTTAGG-TTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
** * * * **
15077642 CCTGAAAATTAGAGGCG-TATTCTTAAAAACGCCGCTAAATCGCCGAAAGCTCAGTAAACAACGT
1 CCTGAGCATTAGCGGCGCT-TTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGT
* * * *
15077706 CGTTGAGCTTAGGTTTTTTGCGGCGCTTTCCTAAAAACGCCACTAAGGA
65 CGTTGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
* * * *
15077755 CCTGAGTATTAACGGCACTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* *
15077820 GTTGGGCATAGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAATA
66 GTTGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
* * * * *
15077868 CCTTAGCATTAGCGGCACTTTATTAAAAACGCCGCGAAACCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* ***
15077933 GTTGGGCTTAGGTTTTTTGTGGCGCTTTCTGGAAAACGCCGCTAA
66 GTTGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
15077978 TGCTTATTTT
Statistics
Matches: 492, Mismatches: 65, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
112 2 0.00
113 283 0.58
114 145 0.29
115 60 0.12
116 2 0.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (113 bp):
CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
GTTGGGCTTAGGTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGA
Found at i:15077799 original size:227 final size:225
Alignment explanation
Indices: 15077300--15077961 Score: 925
Period size: 227 Copynumber: 2.9 Consensus size: 225
15077290 ATTTTAAATC
* *
15077300 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCATAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* * *
15077365 GTTGGGTTTAGGTTTTTTTGCGGCGCTTTACCAACAACGCCGCT-AAGTCCCTGAGAATTAGCGG
66 GTTGGGCTTAGGTTTTTTTGCGGCGCTTTACCAAAAACGCCGCTAAAG-ACCTGAGAATTAGCGG
* *
15077429 CGCTTTCTTACAAAACGCCACTAAATCCTCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAAGTT
130 CG-TTTCTTA-AAAACGCCGCTAAATCC-CGAAAGCTCAGAAAACGGCGTCGTTGGGCTT-AGGT
15077494 TTTTTGCGGCGC-TTCCCAAAAACGCCACTAAAGA
191 TTTTTGCGGCGCTTTCCCAAAAACGCCACTAAAGA
* *
15077528 CTTGAGCATTAGCGGTGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* * * *
15077593 GTTAGGCTTAGGTTTTTTTGTGGCGCTTTACCAAAAACGCCGCTAAAGACCTGAAAATTAGAGGC
66 GTTGGGCTTAGGTTTTTTTGCGGCGCTTTACCAAAAACGCCGCTAAAGACCTGAGAATTAGCGGC
* ** *
15077658 GTATTCTTAAAAACGCCGCTAAATCGCCGAAAGCTCAGTAAACAACGTCGTTGAGCTTAGGTTTT
131 GT-TTCTTAAAAACGCCGCTAAATC-CCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT
* *
15077723 TTGCGGCGCTTTCCTAAAAACGCCACTAAGGA
194 TTGCGGCGCTTTCCCAAAAACGCCACTAAAGA
* * * *
15077755 CCTGAGTATTAACGGCACTTCCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
1 CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
* * * * *
15077820 GTTGGGCATAGG-TTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAATACCTTAGCATTAGCGGC
66 GTTGGGCTTAGGTTTTTTTGCGGCGCTTTACCAAAAACGCCGCTAAAGACCTGAGAATTAGCGGC
* * * *
15077884 ACTTTATTAAAAACGCCGCGAAACCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT
131 -GTTTCTTAAAAACGCCGCTAAA-TCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTT
*
15077949 TTGTGGCGCTTTC
194 TTGCGGCGCTTTC
15077962 TGGAAAACGC
Statistics
Matches: 385, Mismatches: 43, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
226 125 0.32
227 134 0.35
228 123 0.32
229 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (225 bp):
CCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTC
GTTGGGCTTAGGTTTTTTTGCGGCGCTTTACCAAAAACGCCGCTAAAGACCTGAGAATTAGCGGC
GTTTCTTAAAAACGCCGCTAAATCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTT
GCGGCGCTTTCCCAAAAACGCCACTAAAGA
Found at i:15079844 original size:13 final size:13
Alignment explanation
Indices: 15079806--15079831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15079796 ATAGTTAATA
15079806 TAATTTATTATTT
1 TAATTTATTATTT
15079819 TAATTTATTATTT
1 TAATTTATTATTT
15079832 AATATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TAATTTATTATTT
Found at i:15081624 original size:42 final size:42
Alignment explanation
Indices: 15081565--15081678 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
15081555 TTACATGGCT
* **
15081565 TGGGCACACGCCCGTGTCCCTGCTTGTGTGACTCACAC-GACC
1 TGGGCACACGCCTGTGTCCCTGCCCGTGTGACTCACACAG-CC
* *
15081607 TGGGCATACGCTTGTGTCCCTGCCCGTGTGACTCACACAGCC
1 TGGGCACACGCCTGTGTCCCTGCCCGTGTGACTCACACAGCC
* *
15081649 TGGGCACACGCCTGTGTCCTTGGCCGTGTG
1 TGGGCACACGCCTGTGTCCCTGCCCGTGTG
15081679 GTATTGTACC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 61 0.98
43 1 0.02
ACGTcount: A:0.12, C:0.35, G:0.29, T:0.24
Consensus pattern (42 bp):
TGGGCACACGCCTGTGTCCCTGCCCGTGTGACTCACACAGCC
Found at i:15084158 original size:18 final size:18
Alignment explanation
Indices: 15084125--15084166 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
15084115 AATTTAGGCG
*
15084125 TGTGGG-TCACATGGGCA
1 TGTGGGCTCACACGGGCA
15084142 TGTGGGCTCACACGGGCA
1 TGTGGGCTCACACGGGCA
15084160 TGTGGGC
1 TGTGGGC
15084167 CTATATTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.14, C:0.21, G:0.43, T:0.21
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCA
Found at i:15084878 original size:6 final size:6
Alignment explanation
Indices: 15084867--15084895 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
15084857 TTACGGTTCT
15084867 TATTTA TATTTA TATTTA TATTTA TATTT
1 TATTTA TATTTA TATTTA TATTTA TATTT
15084896 TTTTATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TATTTA
Found at i:15089189 original size:13 final size:13
Alignment explanation
Indices: 15089171--15089195 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15089161 TATAAAAGTA
15089171 AAAATAAAATAAG
1 AAAATAAAATAAG
15089184 AAAATAAAATAA
1 AAAATAAAATAA
15089196 AAGCATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAATAAG
Found at i:15091658 original size:22 final size:24
Alignment explanation
Indices: 15091630--15091673 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
15091620 TATGGCAAGA
15091630 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
15091652 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
15091674 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:15093152 original size:21 final size:18
Alignment explanation
Indices: 15093106--15093142 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15093096 ATGAAAGAAT
15093106 AAATG-ATACTGATGATG
1 AAATGTATACTGATGATG
*
15093123 AAATGTATACTGGTGATG
1 AAATGTATACTGATGATG
15093141 AA
1 AA
15093143 GAGTCGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.30
Consensus pattern (18 bp):
AAATGTATACTGATGATG
Found at i:15109167 original size:16 final size:16
Alignment explanation
Indices: 15109146--15109176 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15109136 AAATTGAATA
15109146 CGATTCACATATTATT
1 CGATTCACATATTATT
15109162 CGATTCACATATTAT
1 CGATTCACATATTAT
15109177 ATCATTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (16 bp):
CGATTCACATATTATT
Found at i:15109279 original size:20 final size:20
Alignment explanation
Indices: 15109256--15109320 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
15109246 CATGGTACAA
15109256 AAGTGCATTCAGGGGTACTG
1 AAGTGCATTCAGGGGTACTG
** **
15109276 AAGTATAAACAGGGGTAC-G
1 AAGTGCATTCAGGGGTACTG
* *
15109295 TATGTGCAATTCAGGGGTAATG
1 -AAGTGC-ATTCAGGGGTACTG
15109317 AAGT
1 AAGT
15109321 ACTAACAGGG
Statistics
Matches: 31, Mismatches: 11, Indels: 5
0.66 0.23 0.11
Matches are distributed among these distances:
19 1 0.03
20 17 0.55
21 12 0.39
22 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (20 bp):
AAGTGCATTCAGGGGTACTG
Found at i:15109312 original size:41 final size:41
Alignment explanation
Indices: 15109258--15109348 Score: 132
Period size: 41 Copynumber: 2.2 Consensus size: 41
15109248 TGGTACAAAA
* *
15109258 GTGC-ATTCAGGGGTACTGAAGTA-TAAACAGGGGTACGTAT
1 GTGCAATTCAGGGGTAATGAAGTACT-AACAGGGGCACGTAT
15109298 GTGCAATTCAGGGGTAATGAAGTACTAACAGGGGCACGTAT
1 GTGCAATTCAGGGGTAATGAAGTACTAACAGGGGCACGTAT
*
15109339 ATGCAATTCA
1 GTGCAATTCA
15109349 ACAATATTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
40 4 0.09
41 41 0.89
42 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (41 bp):
GTGCAATTCAGGGGTAATGAAGTACTAACAGGGGCACGTAT
Found at i:15128918 original size:29 final size:28
Alignment explanation
Indices: 15128876--15129157 Score: 287
Period size: 29 Copynumber: 9.8 Consensus size: 28
15128866 CCATATATGG
*
15128876 ATCCCTTTTCATATTCGATGGTTGAAGCC
1 ATCCCTTTTCATATTCGATGGTCGAA-CC
* *
15128905 ATCCCTTTTCATATTTGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
*
15128934 ATCCCTTTTCATA-TCTGATGGTCGAAACA
1 ATCCCTTTTCATATTC-GATGGTCG-AACC
* * **
15128963 ATCCCTTTTTATATTTGATGGTCGTCGCC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
* *
15128992 ATCCCTTTTCATATTCGATGGTTGAAACA
1 ATCCCTTTTCATATTCGATGGTCG-AACC
* * * *
15129021 ATCTCTTTTTATATGCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
*
15129050 ATCCCTTTTCATATTCGATGGTTGAAACC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
*
15129079 ATCCCTTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
* *
15129108 AACCCTTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCG-AACC
* *
15129137 ATCCCTTTTCATGTTCAATGG
1 ATCCCTTTTCATATTCGATGG
15129158 GCATCGATAC
Statistics
Matches: 210, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
28 1 0.00
29 207 0.99
30 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (28 bp):
ATCCCTTTTCATATTCGATGGTCGAACC
Found at i:15128967 original size:58 final size:58
Alignment explanation
Indices: 15128876--15129157 Score: 395
Period size: 58 Copynumber: 4.9 Consensus size: 58
15128866 CCATATATGG
* *
15128876 ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTTGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
* * * * *
15128934 ATCCCTTTTCATA-TCTGATGGTCGAAACAATCCCTTTTTATATTTGATGGTCGTCGCC
1 ATCCCTTTTCATATTC-GATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
* * * *
15128992 ATCCCTTTTCATATTCGATGGTTGAAACAATCTCTTTTTATATGCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
15129050 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
* * ** * *
15129108 AACCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATGTTCAATGG
1 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGG
15129158 GCATCGATAC
Statistics
Matches: 202, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
57 2 0.01
58 198 0.98
59 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (58 bp):
ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACC
Found at i:15129029 original size:87 final size:87
Alignment explanation
Indices: 15128876--15129157 Score: 316
Period size: 87 Copynumber: 3.2 Consensus size: 87
15128866 CCATATATGG
* ** *
15128876 ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTT
1 ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTCGATGGTCGAAACAATCCCTT
15128941 TTCATAT-CTGATGGTCGAAACA
66 TTCATATGC-GATGGTCGAAACA
* * * ** * *
15128963 ATCCCTTTTTATATTTGATGGTCGTCGCCATCCCTTTTCATATTCGATGGTTGAAACAATCTCTT
1 ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTCGATGGTCGAAACAATCCCTT
* ** *
15129028 TTTATATGCGATGGTCGTCACC
66 TTCATATGCGATGGTCGAAACA
* * *
15129050 ATCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATATTCGATGGTCGTCACCAA-CCCT
1 ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTCGATGGTCG-AAACAATCCCT
* ** *
15129114 TTTCATATTCGATGGTCGTCACC
65 TTTCATATGCGATGGTCGAAACA
* *
15129137 ATCCCTTTTCATGTTCAATGG
1 ATCCCTTTTCATATTCGATGG
15129158 GCATCGATAC
Statistics
Matches: 164, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
87 159 0.97
88 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.39
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATGGTTGAAGCCATCCCTTTTCATATTCGATGGTCGAAACAATCCCTT
TTCATATGCGATGGTCGAAACA
Found at i:15150556 original size:38 final size:38
Alignment explanation
Indices: 15150499--15150592 Score: 152
Period size: 38 Copynumber: 2.5 Consensus size: 38
15150489 ATATAAGCTT
* * *
15150499 ACATCTCATGGCAAACCACTACCCTTAAAACTAGGGAC
1 ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
*
15150537 ACATCCCATGACAAGCCACTACCCTTAAAACTAGGAAC
1 ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
15150575 ACATCCCATGACAAACCA
1 ACATCCCATGACAAACCA
15150593 TTATGCTAGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.39, C:0.34, G:0.11, T:0.16
Consensus pattern (38 bp):
ACATCCCATGACAAACCACTACCCTTAAAACTAGGAAC
Found at i:15150918 original size:58 final size:58
Alignment explanation
Indices: 15150854--15150968 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
15150844 AGGAATCATC
*
15150854 ATCATCATCTTCTTCTTCTTTCATTTTACCGAGTCTCAACTCTACATTTAAAGGCGCG
1 ATCATCAACTTCTTCTTCTTTCATTTTACCGAGTCTCAACTCTACATTTAAAGGCGCG
15150912 ATCATCAACTTCTTCTTCTTTCATTTTACCGAGTCTCAACTCTACATTTAAAGGCGC
1 ATCATCAACTTCTTCTTCTTTCATTTTACCGAGTCTCAACTCTACATTTAAAGGCGC
15150969 ATTCAACTTG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.23, C:0.28, G:0.10, T:0.39
Consensus pattern (58 bp):
ATCATCAACTTCTTCTTCTTTCATTTTACCGAGTCTCAACTCTACATTTAAAGGCGCG
Found at i:15153214 original size:3 final size:3
Alignment explanation
Indices: 15153206--15153244 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
15153196 GCTTAACATG
15153206 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15153245 TGAAAAACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15168351 original size:22 final size:23
Alignment explanation
Indices: 15168319--15168365 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
15168309 AACTATAATA
15168319 TTTTACATTTTTCCCCCAA-ACTT
1 TTTTACA-TTTTCCCCCAATACTT
15168342 TTTTAC-TTTTCCCCCAATACTT
1 TTTTACATTTTCCCCCAATACTT
15168364 TT
1 TT
15168366 ACTCCCTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.48
22 6 0.26
23 6 0.26
ACGTcount: A:0.19, C:0.30, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTTACATTTTCCCCCAATACTT
Found at i:15168382 original size:30 final size:31
Alignment explanation
Indices: 15168346--15168404 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
15168336 AAACTTTTTT
* *
15168346 ACTTTTCCCCCAATACTTTTACTC-CCTCCC
1 ACTTTTCCCACAAAACTTTTACTCTCCTCCC
*
15168376 ACTTTTCCTACAAAACTTTTACTCTCCTC
1 ACTTTTCCCACAAAACTTTTACTCTCCTC
15168405 ACATCCCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (31 bp):
ACTTTTCCCACAAAACTTTTACTCTCCTCCC
Found at i:15174587 original size:24 final size:24
Alignment explanation
Indices: 15174525--15174576 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15174515 TTTCTAGAAG
* **
15174525 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGTATTTATTAACATAATAT
15174549 ATTTAGTATTTATTAACATAATAT
1 ATTTAGTATTTATTAACATAATAT
15174573 ATTT
1 ATTT
15174577 GACTTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGTATTTATTAACATAATAT
Found at i:15178955 original size:24 final size:24
Alignment explanation
Indices: 15178921--15178972 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
15178911 TTTCTAGAAG
* **
15178921 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
15178945 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
15178969 ATTT
1 ATTT
15178973 GAATTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:15178983 original size:24 final size:24
Alignment explanation
Indices: 15178938--15178983 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15178928 ATTTATGAGT
*
15178938 ATAATATATTTAGCATTTATTAAC
1 ATAATATATTTAGAATTTATTAAC
15178962 ATAATATATTT-GAATTTGATTA
1 ATAATATATTTAGAATTT-ATTA
15178984 GAATTAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (24 bp):
ATAATATATTTAGAATTTATTAAC
Found at i:15180505 original size:23 final size:23
Alignment explanation
Indices: 15180479--15180526 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
15180469 TCTCACTATT
15180479 CATCATTTTGGCACATTCATACC
1 CATCATTTTGGCACATTCATACC
15180502 CATCATTTTGGCACATTCATACC
1 CATCATTTTGGCACATTCATACC
15180525 CA
1 CA
15180527 CCTTCTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.33
Consensus pattern (23 bp):
CATCATTTTGGCACATTCATACC
Found at i:15181450 original size:16 final size:18
Alignment explanation
Indices: 15181429--15181461 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
15181419 ATATTTAGTC
15181429 ATATAA-TAA-ATTATTA
1 ATATAATTAATATTATTA
15181445 ATATAATTAATATTATT
1 ATATAATTAATATTATT
15181462 GAAAATATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATAATTAATATTATTA
Found at i:15183239 original size:21 final size:20
Alignment explanation
Indices: 15183186--15183241 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
15183176 GCTAAATAAT
*
15183186 TATAAATAGTAATATA-TGA
1 TATAAATAGTAATAAATTGA
* *
15183205 TAAAAATA-TAATAAATTGT
1 TATAAATAGTAATAAATTGA
15183224 TGATAAATAGTAATAAAT
1 T-ATAAATAGTAATAAAT
15183242 GTTTAATAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 6 0.20
19 10 0.33
20 6 0.20
21 8 0.27
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
TATAAATAGTAATAAATTGA
Found at i:15183250 original size:21 final size:21
Alignment explanation
Indices: 15183187--15183250 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
15183177 CTAAATAATT
* *
15183187 ATAAATAGTAATATATG-ATA
1 ATAAATAGTAATAAATGTTTA
*
15183207 A-AAATA-TAATAAAT-TGTTG
1 ATAAATAGTAATAAATGT-TTA
15183226 ATAAATAGTAATAAATGTTTA
1 ATAAATAGTAATAAATGTTTA
15183247 ATAA
1 ATAA
15183251 CATAATAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
18 7 0.20
19 7 0.20
20 6 0.17
21 14 0.40
22 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (21 bp):
ATAAATAGTAATAAATGTTTA
Found at i:15195733 original size:13 final size:13
Alignment explanation
Indices: 15195715--15195741 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15195705 CACAAACGAT
15195715 AAAATTTTCACAC
1 AAAATTTTCACAC
15195728 AAAATTTTCACAC
1 AAAATTTTCACAC
15195741 A
1 A
15195742 TATAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:15203575 original size:13 final size:13
Alignment explanation
Indices: 15203557--15203583 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15203547 CACAAACGGT
15203557 AAAATTTTCACAC
1 AAAATTTTCACAC
15203570 AAAATTTTCACAC
1 AAAATTTTCACAC
15203583 A
1 A
15203584 TATAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:15208143 original size:11 final size:10
Alignment explanation
Indices: 15208118--15208173 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
15208108 TGTTATATAC
*
15208118 TCTTTCTTCT
1 TCTTTCTTTT
15208128 TCTTTCCTTTT
1 TCTTT-CTTTT
15208139 TCTTTCTTTT
1 TCTTTCTTTT
* *
15208149 TATTT-TTTC
1 TCTTTCTTTT
*
15208158 CCTTTCTTTCT
1 TCTTTCTTT-T
15208169 TCTTT
1 TCTTT
15208174 TTACTCCTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
9 6 0.17
10 17 0.47
11 13 0.36
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (10 bp):
TCTTTCTTTT
Found at i:15210924 original size:19 final size:19
Alignment explanation
Indices: 15210878--15210924 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
15210868 AAATAGTTAA
*
15210878 TTAAATTATTTAATTATATT
1 TTAAATT-TTGAATTATATT
*
15210898 TTACATTTTGAAGTTAT-TT
1 TTAAATTTTGAA-TTATATT
15210917 TTAAATTT
1 TTAAATTT
15210925 AAATAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTAAATTTTGAATTATATT
Found at i:15211847 original size:24 final size:24
Alignment explanation
Indices: 15211795--15211847 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
15211785 CTCAAATGCA
15211795 TCCTCCACCACCAATGTATCACCC
1 TCCTCCACCACCAATGTATCACCC
* * *
15211819 ACCTCCACCTCTC-ATGTATCATCC
1 TCCTCCACCAC-CAATGTATCACCC
15211843 TCCTC
1 TCCTC
15211848 AAATATATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.21, C:0.49, G:0.04, T:0.26
Consensus pattern (24 bp):
TCCTCCACCACCAATGTATCACCC
Found at i:15212840 original size:20 final size:21
Alignment explanation
Indices: 15212805--15212843 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
15212795 CATTTCATAT
*
15212805 ATAATATCACATTCAATTTTC
1 ATAATAGCACATTCAATTTTC
15212826 ATAATAGCA-ATTCAATTT
1 ATAATAGCACATTCAATTT
15212844 AACATCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (21 bp):
ATAATAGCACATTCAATTTTC
Found at i:15220774 original size:9 final size:9
Alignment explanation
Indices: 15220760--15220799 Score: 80
Period size: 9 Copynumber: 4.4 Consensus size: 9
15220750 GTTAAACGAA
15220760 TCGAGTTAT
1 TCGAGTTAT
15220769 TCGAGTTAT
1 TCGAGTTAT
15220778 TCGAGTTAT
1 TCGAGTTAT
15220787 TCGAGTTAT
1 TCGAGTTAT
15220796 TCGA
1 TCGA
15220800 ATCAACTCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:15220882 original size:9 final size:9
Alignment explanation
Indices: 15220853--15220889 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
15220843 TGAGTTTTCG
15220853 AATTCGAAT
1 AATTCGAAT
*
15220862 AACTCGAAT
1 AATTCGAAT
15220871 AATTCGAAT
1 AATTCGAAT
*
15220880 AATTTGAAT
1 AATTCGAAT
15220889 A
1 A
15220890 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:15220972 original size:30 final size:31
Alignment explanation
Indices: 15220938--15220998 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
15220928 AACCCTTTTT
* * *
15220938 ACTTTTCCCTCAAAACTTTTACT-CCTTCCC
1 ACTTTCCCCCCAAAACCTTTACTCCCTTCCC
15220968 ACTTTCCCCCCAAAACCTTTACTCCCTTCCC
1 ACTTTCCCCCCAAAACCTTTACTCCCTTCCC
15220999 CTCCCAACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 20 0.74
31 7 0.26
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (31 bp):
ACTTTCCCCCCAAAACCTTTACTCCCTTCCC
Found at i:15223185 original size:10 final size:11
Alignment explanation
Indices: 15223162--15223187 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15223152 AAAAAAATAT
15223162 AAATGCCAAAA
1 AAATGCCAAAA
15223173 AAATGCCAAAA
1 AAATGCCAAAA
15223184 AAAT
1 AAAT
15223188 TTTAGACAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.15, G:0.08, T:0.12
Consensus pattern (11 bp):
AAATGCCAAAA
Found at i:15229103 original size:2 final size:2
Alignment explanation
Indices: 15229096--15229193 Score: 169
Period size: 2 Copynumber: 49.0 Consensus size: 2
15229086 TGGCACATAG
*
15229096 GT GT GT GT GT GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
*
15229138 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT CT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
*
15229180 GT GT GT CT GT GT GT
1 GT GT GT GT GT GT GT
15229194 CTGTCCGAAG
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 90 1.00
ACGTcount: A:0.01, C:0.02, G:0.47, T:0.50
Consensus pattern (2 bp):
GT
Found at i:15241980 original size:14 final size:14
Alignment explanation
Indices: 15241955--15241994 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
15241945 ATTTAATAAA
* *
15241955 TAAAAATAAAAATC
1 TAAAACTAAAAGTC
15241969 TTAAAACTAAAAGTC
1 -TAAAACTAAAAGTC
15241984 TAAAACTAAAA
1 TAAAACTAAAA
15241995 CACACGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.65, C:0.10, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAAACTAAAAGTC
Found at i:15246390 original size:41 final size:41
Alignment explanation
Indices: 15246345--15246432 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
15246335 ATAATGACTC
* *
15246345 TTTACACCTTCCACAATATGTACCACCATATTGCCCAACCA
1 TTTACACCTTCCACAATATATACCACCATATTACCCAACCA
** * *
15246386 TTTACACCTTCCACGGTGTATACCACCATATTATCCAACCA
1 TTTACACCTTCCACAATATATACCACCATATTACCCAACCA
15246427 TTTACA
1 TTTACA
15246433 AGTAAATTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.30
Consensus pattern (41 bp):
TTTACACCTTCCACAATATATACCACCATATTACCCAACCA
Found at i:15253343 original size:19 final size:19
Alignment explanation
Indices: 15253312--15253349 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
15253302 TATAATTCCA
*
15253312 AAAATATGAAAAAGTAAAT
1 AAAATATGAAAAAGAAAAT
15253331 AAAATAT-ATAAAAGAAAAT
1 AAAATATGA-AAAAGAAAAT
15253350 GAAAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (19 bp):
AAAATATGAAAAAGAAAAT
Found at i:15253741 original size:18 final size:18
Alignment explanation
Indices: 15253718--15253757 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
15253708 TGTGGCTTTT
*
15253718 GTTCATCTTTCAAAGTTC
1 GTTCATCTTTCAAAATTC
15253736 GTTCATCTTTCAAAATTC
1 GTTCATCTTTCAAAATTC
15253754 GTTC
1 GTTC
15253758 TTACTTCGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (18 bp):
GTTCATCTTTCAAAATTC
Found at i:15253892 original size:48 final size:49
Alignment explanation
Indices: 15253798--15253894 Score: 142
Period size: 49 Copynumber: 2.0 Consensus size: 49
15253788 TACCTTGAGT
* * *
15253798 CTGTTGAATCCTTTATCGTTGTAAGATTAGGCTGACTTAGGTGTTTTTA
1 CTGTTGAATCCGTTATCATTGTAAGATTAGGCTGACTTAGGCGTTTTTA
* *
15253847 CTGTTGAATCCGTTATCATTGTGAG-TTAGGTTGACTTAGGCGTTTTTA
1 CTGTTGAATCCGTTATCATTGTAAGATTAGGCTGACTTAGGCGTTTTTA
15253895 AGCAAAGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 21 0.49
49 22 0.51
ACGTcount: A:0.20, C:0.12, G:0.24, T:0.44
Consensus pattern (49 bp):
CTGTTGAATCCGTTATCATTGTAAGATTAGGCTGACTTAGGCGTTTTTA
Found at i:15277901 original size:181 final size:181
Alignment explanation
Indices: 15277592--15277950 Score: 596
Period size: 181 Copynumber: 2.0 Consensus size: 181
15277582 GAGGTTTGTA
* * *
15277592 TTAGGGTCAATGAGTAGGTCGAGTAGTTGAATTTATTTTTGCAATTTAGTATTAGAATGAGTCTG
1 TTAGGGTCAATGAGTAGGTCGAGCAGTTGAATTTATTTTTGCAATTTAGTATTAGAATGAGCCTA
* * * *
15277657 CTGGTTCAGTGGTTGAATGAGTGTTCGTCTATCATTGGGTCTTGGGTTTGAGTCCTTATGTGTGT
66 CTGGTTCAGTGGTTGAATGAGTGTTAGTCTATCATTAGGTCTCGGGTTTGAGTCCTCATGTGTGT
15277722 TATTTTAGTTTTGGTTGAAGTCTAGTTTTGTTTTAAAGATTAATTATTAAG
131 TATTTTAGTTTTGGTTGAAGTCTAGTTTTGTTTTAAAGATTAATTATTAAG
15277773 TTAGGGTCAATGAGTAGGTCGAGCAGTTGGAA-TTATTTTTGCAATTTAGT-TCTAGAATGAGCC
1 TTAGGGTCAATGAGTAGGTCGAGCAGTT-GAATTTATTTTTGCAATTTAGTAT-TAGAATGAGCC
*
15277836 TACTGGTTCGGTGGTTGAATGAGTGTTAGTCTATCATTAGGTCTCGGGTTTGAGTCCTCATGTGT
64 TACTGGTTCAGTGGTTGAATGAGTGTTAGTCTATCATTAGGTCTCGGGTTTGAGTCCTCATGTGT
* *
15277901 GTTATTTTAGTTTTGGTTTAAGTCTAGTTTTGTTTTAAAGGTTAATTATT
129 GTTATTTTAGTTTTGGTTGAAGTCTAGTTTTGTTTTAAAGATTAATTATT
15277951 TATTTACTTT
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
180 1 0.01
181 162 0.98
182 3 0.02
ACGTcount: A:0.22, C:0.08, G:0.26, T:0.44
Consensus pattern (181 bp):
TTAGGGTCAATGAGTAGGTCGAGCAGTTGAATTTATTTTTGCAATTTAGTATTAGAATGAGCCTA
CTGGTTCAGTGGTTGAATGAGTGTTAGTCTATCATTAGGTCTCGGGTTTGAGTCCTCATGTGTGT
TATTTTAGTTTTGGTTGAAGTCTAGTTTTGTTTTAAAGATTAATTATTAAG
Found at i:15282054 original size:26 final size:26
Alignment explanation
Indices: 15282025--15282091 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
15282015 CATTCCGACC
15282025 CACAGCTCGTGTGAGCAATCCCATTT
1 CACAGCTCGTGTGAGCAATCCCATTT
15282051 CACAGCTCGTGTGAGCAATCCCATTT
1 CACAGCTCGTGTGAGCAATCCCATTT
*
15282077 CACAGCTCTTGTGAG
1 CACAGCTCGTGTGAG
15282092 AAATGATGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAATCCCATTT
Found at i:15287763 original size:58 final size:57
Alignment explanation
Indices: 15287673--15287861 Score: 209
Period size: 58 Copynumber: 3.2 Consensus size: 57
15287663 AAAAAAAAGG
** *
15287673 AAAAAGTTTAGGCCTTAATGTGAGAACAATTGCCAAGTTCACGGACTAATTTGGATAA
1 AAAAAGTTTAGGCCCCAATGTGAGAACAATTGCCAAGTTCA-GGACTAACTTGGATAA
* * *
15287731 AAAAAGTTTAGGCCCCAATTTGAGAACAATTGCCAAGTTTAGAGCCTAACTTGGATAA
1 AAAAAGTTTAGGCCCCAATGTGAGAACAATTGCCAAGTTCAG-GACTAACTTGGATAA
* * * **
15287789 AAGAAAGTTTAAGCTCCAATGTGAGAA-AACTTGTCAAGTTCAAAACCTAACTTGGATAA
1 AA-AAAGTTTAGGCCCCAATGTGAGAACAA-TTGCCAAGTTCAGGA-CTAACTTGGATAA
15287848 AAAATATGTTTAGG
1 AAAA-A-GTTTAGG
15287862 TTTCAATATG
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
57 1 0.01
58 56 0.51
59 47 0.43
60 6 0.05
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (57 bp):
AAAAAGTTTAGGCCCCAATGTGAGAACAATTGCCAAGTTCAGGACTAACTTGGATAA
Found at i:15289136 original size:31 final size:30
Alignment explanation
Indices: 15289059--15289143 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 30
15289049 GATATATGGA
*
15289059 TTTTGATTTTGTACAATTATACATATGAAAC
1 TTTT-ATTTTGTTCAATTATACATATGAAAC
* ** * *
15289090 TTTAATTATAATTCAAATATATATATGAAAC
1 TTTTATT-TTGTTCAATTATACATATGAAAC
15289121 TTTTATTTTGCTTCAATTATACA
1 TTTTATTTTG-TTCAATTATACA
15289144 CGTTTGATAG
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
30 4 0.10
31 37 0.90
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (30 bp):
TTTTATTTTGTTCAATTATACATATGAAAC
Found at i:15290419 original size:30 final size:32
Alignment explanation
Indices: 15290376--15290450 Score: 136
Period size: 30 Copynumber: 2.4 Consensus size: 32
15290366 TCTCCATGAT
15290376 TAAAATAAATTATATCATTTTACCAAA-AAAA
1 TAAAATAAATTATATCATTTTACCAAATAAAA
15290407 TAAAAT-AATTATATCATTTTACCAAATAAAA
1 TAAAATAAATTATATCATTTTACCAAATAAAA
15290438 TAAAATAAATTAT
1 TAAAATAAATTAT
15290451 GTCAAACATG
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 20 0.48
31 16 0.38
32 6 0.14
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (32 bp):
TAAAATAAATTATATCATTTTACCAAATAAAA
Found at i:15299629 original size:41 final size:41
Alignment explanation
Indices: 15299559--15299877 Score: 432
Period size: 41 Copynumber: 7.9 Consensus size: 41
15299549 GACCTTTTGG
* *
15299559 GGCTTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCG
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* *
15299600 GAGC-TTTAGCGGCGTTTCT-AAAAATGCGCCGCTAATGTTCA
1 G-GCTTTTAGCGGCGTTTTTGAAAAA-GCGCCGCTAATGCTCA
* *
15299641 GGCTTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTTA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
*
15299682 GGCTTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* *
15299723 GGCTTTTAGCGGCGTTTTTGAGAAAGCGTCGCTAATGCTCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * **
15299764 GGCTTTTAGCGGCATTTTTTAGTAAGCGCCGCTAATGCTCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* *
15299805 TGCTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAA---TCA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* *
15299843 GACTTTTAGCGACGTTTTTGAAAAAGCGCCGCTAA
1 GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
15299878 GTAATGCATT
Statistics
Matches: 250, Mismatches: 24, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
38 34 0.14
40 6 0.02
41 204 0.82
42 6 0.02
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (41 bp):
GGCTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
Found at i:15299913 original size:20 final size:19
Alignment explanation
Indices: 15299885--15299930 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
15299875 TAAGTAATGC
*
15299885 ATTTTATTTGTCTATTTACT
1 ATTTAATTTGTCTATTTA-T
*
15299905 ATTTAATTTGTTTATTTAT
1 ATTTAATTTGTCTATTTAT
15299924 A-TTAATT
1 ATTTAATT
15299931 AAAATTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 2 0.08
20 16 0.67
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (19 bp):
ATTTAATTTGTCTATTTAT
Found at i:15304344 original size:31 final size:31
Alignment explanation
Indices: 15304306--15304364 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
15304296 TATGTGATAG
*
15304306 AGTCTCGTTTGTGTTTGTTTTTAACCCATGT
1 AGTCTCGTCTGTGTTTGTTTTTAACCCATGT
15304337 AGTCTCGTCTGTGTTTGTTTTTAACCCA
1 AGTCTCGTCTGTGTTTGTTTTTAACCCA
15304365 GGTGCTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.49
Consensus pattern (31 bp):
AGTCTCGTCTGTGTTTGTTTTTAACCCATGT
Found at i:15305755 original size:43 final size:42
Alignment explanation
Indices: 15305695--15305782 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
15305685 CTTTGAGTTC
* *
15305695 ATTACAAGATTTCCTTGATTAA-ATAAATGTATTATATATTTT
1 ATTACAAGATTTACTTGATTAAGA-AAATGCATTATATATTTT
* *
15305737 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATGTTTT
1 ATTA-CAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
15305780 ATT
1 ATT
15305783 GCCTTGCATA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.10
43 35 0.88
44 1 0.03
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.45
Consensus pattern (42 bp):
ATTACAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:15306133 original size:43 final size:43
Alignment explanation
Indices: 15306085--15306357 Score: 268
Period size: 43 Copynumber: 6.3 Consensus size: 43
15306075 AGTTTATGTT
* *
15306085 TTTAGCGGCGTTT-TAGCGAGAAGTGCCGCTAAAGGTGATGGTC
1 TTTAGCGGCGTTTGTGGCGA-AAGTGCCGCTAAAGGTCATGGTC
* * ** *
15306128 TTTAGCGGCGTTTGTGGGGAAAGTGCCGCTAAAAGTTTTTGTC
1 TTTAGCGGCGTTTGTGGCGAAAGTGCCGCTAAAGGTCATGGTC
* * * *
15306171 TTTAGTGGCGTTTGTGG-GAAAAGCGCCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGCG-AAAGTGCCGCTAAAGGTCATGGTC
*
15306214 TTTAGCGGCGTTTGTGGC-AAAGGTGCCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGCGAAA-GTGCCGCTAAAGGTCATGGTC
*** * *
15306257 TTTAGCGGCGTTTGTGG-GAAAAACACCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGCG-AAAGTGCCGCTAAAGGTCATGGTC
* * * * *
15306300 TTTAGCGGCGTTTGTGG-GAAAAGCGTCGCTAATGTTCTTGGTC
1 TTTAGCGGCGTTTGTGGCG-AAAGTGCCGCTAAAGGTCATGGTC
15306343 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
15306358 TTCTAAAAAC
Statistics
Matches: 197, Mismatches: 27, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
42 4 0.02
43 186 0.94
44 7 0.04
ACGTcount: A:0.18, C:0.16, G:0.33, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGCGAAAGTGCCGCTAAAGGTCATGGTC
Found at i:15306218 original size:86 final size:85
Alignment explanation
Indices: 15306072--15306357 Score: 342
Period size: 86 Copynumber: 3.3 Consensus size: 85
15306062 ATAATTTTTT
* * * * * **
15306072 TAAAGTTTAT-GTTTTTAGCGGCGTTT-TAGCGAGAAGTGCCGCTAAAGGTGATGGTCTTTAGCG
1 TAAAGTTT-TGGTCTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAATGGTCTTGGTCTTTAGCG
*
15306135 GCGTTTGTGGGGAAAGTGCCGC
64 GCGTTTGTGGGAAAAGTGCCGC
* *
15306157 TAAAAGTTTTTGTCTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTCTTTAGCGG
1 T-AAAGTTTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTCTTTAGCGG
* *
15306222 CGTTTGTGGCAAAGGTGCCGC
65 CGTTTGTGGGAAAAGTGCCGC
** * *
15306243 TAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAAAACACCGCTAATGGTCTTGGTCTTTAGCGG
1 TAAAG-TTTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTCTTTAGCGG
* *
15306308 CGTTTGTGGGAAAAGCGTCGC
65 CGTTTGTGGGAAAAGTGCCGC
*
15306329 TAATGTTCTTGGTCTTTAGCGGCGTTTGT
1 TAAAGTT-TTGGTCTTTAGCGGCGTTTGT
15306358 TTCTAAAAAC
Statistics
Matches: 172, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
85 7 0.04
86 164 0.95
87 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.32, T:0.33
Consensus pattern (85 bp):
TAAAGTTTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTCTTTAGCGGC
GTTTGTGGGAAAAGTGCCGC
Found at i:15306315 original size:129 final size:130
Alignment explanation
Indices: 15306085--15306357 Score: 390
Period size: 129 Copynumber: 2.1 Consensus size: 130
15306075 AGTTTATGTT
* * *
15306085 TTTAGCGGCGTTT-TAGCGAGAAGTGCCGCTAAAGGTGATGGTCTTTAGCGGCGTTTGTGGGGAA
1 TTTAGCGGCGTTTGTAGCGAGAAGTGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAA
*** * * *
15306149 AGTGCCGCTAAAAGTTTTTGTCTTTAGTGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTC
66 AACACCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTC
*
15306214 TTTAGCGGCGTTTGTGGC-A-AAGGTGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAA
1 TTTAGCGGCGTTTGTAGCGAGAA-GTGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAA
** * *
15306277 AAACACCGCTAATGGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAATGTTCTTGGT
65 AAACACCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGT
15306342 C
130 C
15306343 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
15306358 TTCTAAAAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
128 2 0.02
129 123 0.96
130 3 0.02
ACGTcount: A:0.18, C:0.16, G:0.33, T:0.32
Consensus pattern (130 bp):
TTTAGCGGCGTTTGTAGCGAGAAGTGCCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGGAAA
AACACCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAATGGTCTTGGTC
Found at i:15306450 original size:22 final size:22
Alignment explanation
Indices: 15306422--15306464 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
15306412 TAGTGGTGCT
*
15306422 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
*
15306444 AAAAAGCGCTGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
15306465 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:15310540 original size:26 final size:26
Alignment explanation
Indices: 15310502--15310551 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15310492 AACATATTTT
15310502 TTCATAAATTTTACTAGGGGTAAAATC
1 TTCATAAATTTTACTA-GGGTAAAATC
15310529 TTCAT-AATTTTACTAGGGTAAAA
1 TTCATAAATTTTACTAGGGTAAAA
15310552 CCGGGATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.35
26 10 0.43
27 5 0.22
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (26 bp):
TTCATAAATTTTACTAGGGTAAAATC
Found at i:15310560 original size:25 final size:26
Alignment explanation
Indices: 15310508--15310560 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
15310498 TTTTTTCATA
* **
15310508 AATTTTACTAGGGGTAAAATCTTCAT
1 AATTTTACTAGGGGTAAAACCGGCAT
*
15310534 AATTTTACTA-GGGTAAAACCGGGAT
1 AATTTTACTAGGGGTAAAACCGGCAT
15310559 AA
1 AA
15310561 GAAAATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (26 bp):
AATTTTACTAGGGGTAAAACCGGCAT
Found at i:15311954 original size:16 final size:16
Alignment explanation
Indices: 15311933--15311963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15311923 ATTGGGTTGA
*
15311933 AAAATTATTTAATTAG
1 AAAATTAATTAATTAG
15311949 AAAATTAATTAATTA
1 AAAATTAATTAATTA
15311964 AATTTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAAATTAATTAATTAG
Found at i:15312151 original size:24 final size:24
Alignment explanation
Indices: 15312123--15312172 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
15312113 GGGTGGCAAC
15312123 CCTAGTGTATTTAACTAGGGTTAG
1 CCTAGTGTATTTAACTAGGGTTAG
15312147 CCTAGTGTATTTAACTAGGGTTAG
1 CCTAGTGTATTTAACTAGGGTTAG
15312171 CC
1 CC
15312173 GTCCCTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (24 bp):
CCTAGTGTATTTAACTAGGGTTAG
Found at i:15319488 original size:17 final size:16
Alignment explanation
Indices: 15319468--15319525 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
15319458 ATTTTAATAG
15319468 ATTTAATATTTGATTTA
1 ATTTAATATTT-ATTTA
15319485 ATTTAATATTTATATTA
1 ATTTAATATTTAT-TTA
*
15319502 A--TAGTATTT-TATTA
1 ATTTAATATTTAT-TTA
15319516 ATTTAATATT
1 ATTTAATATT
15319526 AAAGTGATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 6 0.17
15 7 0.19
16 8 0.22
17 15 0.42
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
ATTTAATATTTATTTA
Found at i:15319525 original size:25 final size:25
Alignment explanation
Indices: 15319492--15319547 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
15319482 TTAATTTAAT
*
15319492 ATTT-ATATTAATAGT-ATTTTATTA
1 ATTTAATATTAA-AGTGATTATATTA
15319516 ATTTAATATTAAAGTGATTATATTA
1 ATTTAATATTAAAGTGATTATATTA
15319541 ATATTAA
1 AT-TTAA
15319548 ATTGAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 17 0.61
26 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (25 bp):
ATTTAATATTAAAGTGATTATATTA
Found at i:15319610 original size:62 final size:59
Alignment explanation
Indices: 15319538--15319653 Score: 169
Period size: 62 Copynumber: 1.9 Consensus size: 59
15319528 AGTGATTATA
* * *
15319538 TTAATATTAAATTGAATTTAATATTTATCTTGTAGATAAATTTTCTATTAATTTAATAAGAT
1 TTAATATTAAATTGAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
*
15319600 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
1 TTAATATTAAATTGAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
15319654 TTTAGAGTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 21 0.42
60 1 0.02
61 1 0.02
62 27 0.54
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTGAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:15326661 original size:11 final size:11
Alignment explanation
Indices: 15326647--15326678 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
15326637 CAATCATTCC
15326647 TCAAGCATCAA
1 TCAAGCATCAA
15326658 TCAAGCATCAA
1 TCAAGCATCAA
15326669 TCAAGCATCA
1 TCAAGCATCA
15326679 TTCTCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.28, G:0.09, T:0.19
Consensus pattern (11 bp):
TCAAGCATCAA
Found at i:15328581 original size:45 final size:46
Alignment explanation
Indices: 15328513--15328629 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 46
15328503 AGTCCTATTT
* * *
15328513 ACCATGATGCCAT-GTCATCTTTCAGCCATTATCTTACTCAT-TTCC
1 ACCATGATGCCATAG-CATTTTTCAGCCATGATCTTACGCATATTCC
* * * * **
15328558 ATCATGATGCCATAGCATTTTTCAACTATGGTCTTACGCATATTTT
1 ACCATGATGCCATAGCATTTTTCAGCCATGATCTTACGCATATTCC
*
15328604 ACCATGGTGCCATAGCATTTTTCAGC
1 ACCATGATGCCATAGCATTTTTCAGC
15328630 TATGGGCTTA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
45 32 0.55
46 26 0.45
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.38
Consensus pattern (46 bp):
ACCATGATGCCATAGCATTTTTCAGCCATGATCTTACGCATATTCC
Found at i:15328625 original size:22 final size:23
Alignment explanation
Indices: 15328560--15328625 Score: 57
Period size: 22 Copynumber: 2.9 Consensus size: 23
15328550 TCATTTCCAT
*
15328560 CATGATGCCATAGCATTTTTCAAC
1 CATGGTGCCATAGCATTTTT-AAC
* *
15328584 TATGGT--CTTACGCATATTTT-AC
1 CATGGTGCCATA-GCAT-TTTTAAC
15328606 CATGGTGCCATAGCATTTTT
1 CATGGTGCCATAGCATTTTT
15328626 CAGCTATGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
22 14 0.42
23 8 0.24
24 11 0.33
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (23 bp):
CATGGTGCCATAGCATTTTTAAC
Found at i:15329535 original size:16 final size:16
Alignment explanation
Indices: 15329514--15329545 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15329504 AGAGACTGCC
15329514 AACTTTAAGTCTTTTT
1 AACTTTAAGTCTTTTT
15329530 AACTTTAAGTCTTTTT
1 AACTTTAAGTCTTTTT
15329546 CAATTGAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (16 bp):
AACTTTAAGTCTTTTT
Found at i:15331682 original size:23 final size:23
Alignment explanation
Indices: 15331655--15331699 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15331645 GAGAAAAATA
15331655 AAAGAAAAGA-AGAAAAATGAAAG
1 AAAGAAAAGATA-AAAAATGAAAG
15331678 AAAGAAAAGATAAAAAATGAAA
1 AAAGAAAAGATAAAAAATGAAA
15331700 AACAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (23 bp):
AAAGAAAAGATAAAAAATGAAAG
Found at i:15340288 original size:20 final size:21
Alignment explanation
Indices: 15340263--15340303 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15340253 TAGAAAATTA
*
15340263 AGCTT-ATTGGGCTCTCAAGC
1 AGCTTAATTGGGATCTCAAGC
*
15340283 AGCTTAATTTGGATCTCAAGC
1 AGCTTAATTGGGATCTCAAGC
15340304 TTGCTAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (21 bp):
AGCTTAATTGGGATCTCAAGC
Found at i:15342279 original size:43 final size:43
Alignment explanation
Indices: 15342232--15342477 Score: 239
Period size: 43 Copynumber: 5.7 Consensus size: 43
15342222 AGACCATGAG
* * *
15342232 CTTTAGCGGCGTTTTTACTACAAACGCCACTATAAATCAGGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCACTATAAATCAAGAC
* * * *
15342275 CTTTAGCGGCGCTTTT-CCAACAAACGCCGCTATAGATCAGGAT
1 CTTTAGCGGCGCTTTTACC-ACAAACGCCACTATAAATCAAGAC
* * * * *
15342318 CTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAGAT
1 CTTTAGCGGCGCTTTTACCACAAACGCCACTATAAATCAAGAC
* * * ** *
15342361 CTTTAACGGCACTTTTCCCACAAACGCCACTATAGCTGAAGAC
1 CTTTAGCGGCGCTTTTACCACAAACGCCACTATAAATCAAGAC
*
15342404 CTTTAGCGGCGCTTTTACCACAAACACCACTATAACA-CAA-AC
1 CTTTAGCGGCGCTTTTACCACAAACGCCACTATAA-ATCAAGAC
* * *
15342446 CTTTAGCGACGCTTCTT-GCAAAAACGCCACTA
1 CTTTAGCGGCGCTT-TTACCACAAACGCCACTA
15342478 AAAACATAAC
Statistics
Matches: 174, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
42 28 0.16
43 144 0.83
44 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTACCACAAACGCCACTATAAATCAAGAC
Found at i:15342322 original size:86 final size:85
Alignment explanation
Indices: 15342186--15342473 Score: 285
Period size: 86 Copynumber: 3.4 Consensus size: 85
15342176 CAATGTCGCT
* * * * * *
15342186 ACCTTTAGCGGCG-TTTTCAGCAATAAACGCCGCTAAAGACCATGAGCTTTAGCGGCGTTTTTAC
1 ACCTTTAGCGGCGCTTTTC--CAACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTAC
*
15342250 TACAAACGCCACTATAAATCAGG
64 CACAAACGCCACTATAAATCA-G
* * * *
15342273 ACCTTTAGCGGCGCTTTTCCAACAAACGCCGCTATAGATCAGGATCTTTAGCGACGCTTTTCCCA
1 ACCTTTAGCGGCGCTTTTCCAACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTACCA
* *
15342338 CAAACGCCGCTATAGATCAAG
66 CAAACGCCACTATAAATC-AG
* * * * * * *
15342359 ATCTTTAACGGCACTTTTCCCACAAACGCCACTATAGCTGAAGACCTTTAGCGGCGCTTTTACCA
1 ACCTTTAGCGGCGCTTTTCCAACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTACCA
* *
15342424 CAAACACCACTATAACA-CAA
66 CAAACGCCACTATAA-ATCAG
* *
15342444 ACCTTTAGCGACGCTTCTTGCAA-AAACGCC
1 ACCTTTAGCGGCGCTT-TTCCAACAAACGCC
15342474 ACTAAAAACA
Statistics
Matches: 165, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
85 20 0.12
86 125 0.76
87 15 0.09
88 5 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (85 bp):
ACCTTTAGCGGCGCTTTTCCAACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTACCA
CAAACGCCACTATAAATCAG
Found at i:15347723 original size:7 final size:7
Alignment explanation
Indices: 15347670--15347744 Score: 51
Period size: 7 Copynumber: 10.3 Consensus size: 7
15347660 CCCGACCATT
15347670 AACCCTTA
1 AACCC-TA
*
15347678 AATCCTA
1 AACCCTA
*
15347685 AACCCTG
1 AACCCTA
*
15347692 AACCCTT
1 AACCCTA
*
15347699 AACCTTA
1 AACCCTA
**
15347706 AACTTTAA
1 AACCCT-A
15347714 AACCCTA
1 AACCCTA
15347721 AACCCATA
1 AACCC-TA
*
15347729 ACCCCTA
1 AACCCTA
*
15347736 ACCCCTA
1 AACCCTA
15347743 AA
1 AA
15347745 ACTTATTTAA
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
7 39 0.72
8 15 0.28
ACGTcount: A:0.40, C:0.37, G:0.01, T:0.21
Consensus pattern (7 bp):
AACCCTA
Found at i:15348548 original size:41 final size:41
Alignment explanation
Indices: 15348383--15348661 Score: 381
Period size: 41 Copynumber: 6.9 Consensus size: 41
15348373 TTTTATTATT
*
15348383 ATTAGCGGCGCTT-TTCAAAAACGCCGCTAAATG--C--GC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
15348419 ATTAGCGGCGCTTCGTCAAAAACGCCGCTAAAGGCCCGAGA
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * **
15348460 ATTAGCGGCGCTTCTTCAGAAACTCCATTAACAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAA-AGGCCCGAGC
* * *
15348502 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCCAAC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
*
15348543 ATTAGCGGCGCTTCTTCACAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
*
15348584 ATTAGCGGCGCTTCGTT-AAAAACGCCGCTAAAGGTCCGAGC
1 ATTAGCGGCGCTTC-TTCAAAAACGCCGCTAAAGGCCCGAGC
*
15348625 ATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
15348662 CAAAAACTTA
Statistics
Matches: 211, Mismatches: 24, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
36 13 0.06
37 18 0.09
39 1 0.00
40 1 0.00
41 141 0.67
42 37 0.18
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:15348843 original size:40 final size:40
Alignment explanation
Indices: 15348721--15348847 Score: 120
Period size: 40 Copynumber: 3.2 Consensus size: 40
15348711 TTCAAAAAAT
*
15348721 GCCGCTAATGCTT-ATTTTTAGCGGCG--TTTTCCAGAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTCC--AAAGC
* * ** * *
15348760 GCCACTAATGCTCGACCTTTAGTGGCGTTTATAT-AAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTT-TTTCCAAAGC
15348800 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCCAAA-C
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-TCCAAAGC
15348840 GCCGCTAA
1 GCCGCTAA
15348848 AAGCATGTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
39 12 0.17
40 51 0.74
41 3 0.04
42 1 0.01
43 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (40 bp):
GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTCCAAAGC
Found at i:15349572 original size:18 final size:19
Alignment explanation
Indices: 15349551--15349600 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 19
15349541 ATAGTTTTCT
15349551 TATATTATTATTATAAT-A-
1 TATATTA-TATTATAATAAG
* *
15349569 TATATAAATGTTATAATAAG
1 TATAT-TATATTATAATAAG
15349589 TATATTATATTA
1 TATATTATATTA
15349601 ATATGTTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
18 13 0.52
19 7 0.28
20 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (19 bp):
TATATTATATTATAATAAG
Found at i:15349583 original size:11 final size:13
Alignment explanation
Indices: 15349567--15349614 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
15349557 ATTATTATAA
15349567 TATATATAA-ATGT
1 TATA-ATAATATGT
*
15349580 TATAATAAGTATAT
1 TATAATAA-TATGT
*
15349594 TATATTAATATGT
1 TATAATAATATGT
15349607 TATAATAA
1 TATAATAA
15349615 ACATTAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 4 0.14
13 15 0.52
14 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (13 bp):
TATAATAATATGT
Found at i:15349592 original size:27 final size:27
Alignment explanation
Indices: 15349562--15349614 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
15349552 ATATTATTAT
15349562 TATAATATATATAA-ATGTTATAATAAG
1 TATAATATAT-TAATATGTTATAATAAG
*
15349589 TATATTATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
15349615 ACATTAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:15349620 original size:25 final size:26
Alignment explanation
Indices: 15349567--15349620 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
15349557 ATTATTATAA
*
15349567 TATATATAAATGTTATAATAAGTATAT
1 TATATATAAATGTTATAATAAG-ACAT
15349594 TATAT-TAATATGTTATAATAA-ACAT
1 TATATATAA-ATGTTATAATAAGACAT
15349619 TA
1 TA
15349621 AAAGAAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 5 0.20
26 3 0.12
27 17 0.68
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (26 bp):
TATATATAAATGTTATAATAAGACAT
Found at i:15350589 original size:43 final size:43
Alignment explanation
Indices: 15350507--15350612 Score: 97
Period size: 43 Copynumber: 2.5 Consensus size: 43
15350497 GACTCCGATA
* * * *
15350507 TGTGTTTTCGTGTAAGACCATGTTTGAGACATCGGCATCGACC
1 TGTGTTTACGTGTAAGACCATATCTGAGACATCGACATCGACC
* * ***
15350550 TGTGTTTACGTGTAAGACCCTATCTGGGACAGT-GACATCGGTA
1 TGTGTTTACGTGTAAGACCATATCTGAGACA-TCGACATCGACC
* *
15350593 TGTGATTACATGTAAGACCA
1 TGTGTTTACGTGTAAGACCA
15350613 CGTCCGGGAC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTGTTTACGTGTAAGACCATATCTGAGACATCGACATCGACC
Found at i:15355888 original size:22 final size:22
Alignment explanation
Indices: 15355848--15355894 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
15355838 TGTTACCATG
* *
15355848 TTTTTTTGTTGTCTCACTACCA
1 TTTTGTTGTTGTCTAACTACCA
* *
15355870 TTTTGTTGTTGTTTAACTATCA
1 TTTTGTTGTTGTCTAACTACCA
15355892 TTT
1 TTT
15355895 CACTATTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.60
Consensus pattern (22 bp):
TTTTGTTGTTGTCTAACTACCA
Found at i:15355924 original size:33 final size:33
Alignment explanation
Indices: 15355869--15355936 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
15355859 TCTCACTACC
** *
15355869 ATTTTGTTGTTGTTTAACTATCATTTCACTATT
1 ATTTTGTTGTCATTTAACTATCACTTCACTATT
* *
15355902 ATTTTGTTGTCATTTCATTATCACTTCACTATT
1 ATTTTGTTGTCATTTAACTATCACTTCACTATT
15355935 AT
1 AT
15355937 ATTGCTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (33 bp):
ATTTTGTTGTCATTTAACTATCACTTCACTATT
Found at i:15356016 original size:52 final size:53
Alignment explanation
Indices: 15355955--15356064 Score: 177
Period size: 52 Copynumber: 2.1 Consensus size: 53
15355945 TATTATTTTT
* *
15355955 GTTTATTGTTTGGATATTGTATAGCCCTTGTTGTATTGTTAATTTTTCTACTA
1 GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
*
15356008 GTTT-TTGTTTGGATAATGTATAACTCTTGTTGTATTGTTAATTTTTCTACTA
1 GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
*
15356060 CTTTA
1 GTTTA
15356065 GAGGCATTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 48 0.92
53 4 0.08
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.55
Consensus pattern (53 bp):
GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
Found at i:15360533 original size:4 final size:4
Alignment explanation
Indices: 15360518--15360548 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
15360508 ACCTGATGCA
*
15360518 ACAT AAAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
15360549 AATTACTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:15361213 original size:21 final size:21
Alignment explanation
Indices: 15361188--15361227 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15361178 ATACTTTTAT
15361188 AATAATATTT-ATTATTTTAAA
1 AATAAT-TTTAATTATTTTAAA
*
15361209 AATAATTTTAATTTTTTTA
1 AATAATTTTAATTATTTTA
15361228 TTGAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATAATTTTAATTATTTTAAA
Found at i:15363749 original size:30 final size:30
Alignment explanation
Indices: 15363715--15363777 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
15363705 TAATAAATAA
*
15363715 AATTATCAAACCC-AGCCAATTACCCAACTC
1 AATTA-CAAACCCAACCCAATTACCCAACTC
*
15363745 AATTACCAACCCAACCCAATTACCCAACTC
1 AATTACAAACCCAACCCAATTACCCAACTC
15363775 AAT
1 AAT
15363778 AAAACTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.41, C:0.38, G:0.02, T:0.19
Consensus pattern (30 bp):
AATTACAAACCCAACCCAATTACCCAACTC
Found at i:15363758 original size:17 final size:17
Alignment explanation
Indices: 15363736--15363768 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15363726 CCAGCCAATT
*
15363736 ACCCAACTCAATTACCA
1 ACCCAACCCAATTACCA
15363753 ACCCAACCCAATTACC
1 ACCCAACCCAATTACC
15363769 CAACTCAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.15
Consensus pattern (17 bp):
ACCCAACCCAATTACCA
Found at i:15363866 original size:51 final size:52
Alignment explanation
Indices: 15363753--15363866 Score: 196
Period size: 51 Copynumber: 2.2 Consensus size: 52
15363743 TCAATTACCA
15363753 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
* *
15363805 ACCCAA-CCAATTACCCTACTGAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
15363856 A-CCAACCCAAT
1 ACCCAACCCAAT
15363867 AAAAATAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
50 4 0.07
51 49 0.83
52 6 0.10
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (52 bp):
ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
Found at i:15364094 original size:37 final size:37
Alignment explanation
Indices: 15364020--15364094 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
15364010 TGTTAATTTC
* *
15364020 AAGAATTATATAATGTTTTTAATTATGTAGTGTTTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
* * *
15364057 AAGACTTATGTAATATTTTTAATTATGTTGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
15364094 A
1 A
15364095 TTCGGGTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
Found at i:15364401 original size:20 final size:20
Alignment explanation
Indices: 15364376--15364416 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
15364366 TTAGGAATAG
15364376 TGGGGTCAAGTCATGAACAA
1 TGGGGTCAAGTCATGAACAA
* *
15364396 TGGGGTCATGTCGTGAACAA
1 TGGGGTCAAGTCATGAACAA
15364416 T
1 T
15364417 AATAGTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (20 bp):
TGGGGTCAAGTCATGAACAA
Found at i:15364639 original size:9 final size:9
Alignment explanation
Indices: 15364625--15364650 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
15364615 ATTTTTGTAT
15364625 AATGTTTTA
1 AATGTTTTA
15364634 AATGTTTTA
1 AATGTTTTA
15364643 AATGTTTT
1 AATGTTTT
15364651 GTTAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (9 bp):
AATGTTTTA
Found at i:15369000 original size:15 final size:15
Alignment explanation
Indices: 15368980--15369010 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15368970 GTTATGTAAG
15368980 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
15368995 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
15369010 T
1 T
15369011 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Done.