Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 54 of 185
Found at i:15372782 original size:19 final size:19
Alignment explanation
Indices: 15372760--15372799 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15372750 ACGAGAGTTC
*
15372760 ATGCAAAAAAACACGTAAA
1 ATGCAAAAAAACACATAAA
*
15372779 ATGCAAGAAAACACATAAA
1 ATGCAAAAAAACACATAAA
15372798 AT
1 AT
15372800 AAAGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.15, G:0.10, T:0.12
Consensus pattern (19 bp):
ATGCAAAAAAACACATAAA
Found at i:15372806 original size:18 final size:19
Alignment explanation
Indices: 15372767--15372807 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15372757 TTCATGCAAA
* *
15372767 AAAACACGTAAAATGCAAG
1 AAAACACATAAAATGAAAG
15372786 AAAACACATAAAAT-AAAG
1 AAAACACATAAAATGAAAG
15372804 AAAA
1 AAAA
15372808 ATAGTACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.68, C:0.12, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAACACATAAAATGAAAG
Found at i:15384185 original size:30 final size:30
Alignment explanation
Indices: 15384127--15384185 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
15384117 TATTTTATTG
*
15384127 TTAATTTTGTTATTATTTTAAATACATTTA
1 TTAATTTTGTTATTATTTTAAAGACATTTA
* *
15384157 TTAATTTTGTTATTATTTTAGAGGCATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
15384186 GCTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTA
Found at i:15385046 original size:14 final size:15
Alignment explanation
Indices: 15385025--15385059 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
15385015 GTTTTCTAAG
15385025 ATAAATAAATGTTTT
1 ATAAATAAATGTTTT
*
15385040 A-AAATAACTGTTTT
1 ATAAATAAATGTTTT
15385054 ATAAAT
1 ATAAAT
15385060 TCTGATAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (15 bp):
ATAAATAAATGTTTT
Found at i:15386001 original size:5 final size:5
Alignment explanation
Indices: 15385991--15386021 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
15385981 ATTCCTATTT
15385991 AATAC AATAC AATAC AATAC AATAC AATAC A
1 AATAC AATAC AATAC AATAC AATAC AATAC A
15386022 TATTTATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAC
Found at i:15393180 original size:17 final size:16
Alignment explanation
Indices: 15393143--15393178 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
15393133 TATTGATGAA
15393143 AGGGTTATTTTTTATC
1 AGGGTTATTTTTTATC
15393159 AGGGTTATTTTTTATC
1 AGGGTTATTTTTTATC
15393175 AGGG
1 AGGG
15393179 GTGAAGTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (16 bp):
AGGGTTATTTTTTATC
Found at i:15394835 original size:16 final size:17
Alignment explanation
Indices: 15394801--15394835 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
15394791 CTACTTCAAT
*
15394801 TTATTTTACTGATGTCA
1 TTATTTTACTGATGGCA
15394818 TTATTTTA-TGATGGCA
1 TTATTTTACTGATGGCA
15394834 TT
1 TT
15394836 GTAAGTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.54
Consensus pattern (17 bp):
TTATTTTACTGATGGCA
Found at i:15397488 original size:20 final size:20
Alignment explanation
Indices: 15397450--15397491 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
15397440 ACTTCGACAT
*
15397450 CTCTGTTTTCATTTTGGTGC
1 CTCTGTTTTCATTTCGGTGC
15397470 CTCTGTTTTC-TCTTCGGTGC
1 CTCTGTTTTCAT-TTCGGTGC
15397490 CT
1 CT
15397492 TCGATTGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.02, C:0.26, G:0.19, T:0.52
Consensus pattern (20 bp):
CTCTGTTTTCATTTCGGTGC
Found at i:15401220 original size:6 final size:6
Alignment explanation
Indices: 15401206--15401275 Score: 104
Period size: 6 Copynumber: 11.7 Consensus size: 6
15401196 AGGTTTCCAA
*
15401206 AAATAG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
* * *
15401254 AAATGA AAATGA AAATGT AAAT
1 AAATGG AAATGG AAATGG AAAT
15401276 AACTCATTTG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.19
Consensus pattern (6 bp):
AAATGG
Found at i:15401493 original size:26 final size:26
Alignment explanation
Indices: 15401423--15401495 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
15401413 TATTTTCTCG
*
15401423 AAATTTTACTAGGGGCAAAATCATCA
1 AAATTTTACTAGGGGTAAAATCATCA
* * * * *
15401449 AAATTTTACCAAGGATAAAATCGTTA
1 AAATTTTACTAGGGGTAAAATCATCA
*
15401475 GAATTTTACTAGGGGTAAAAT
1 AAATTTTACTAGGGGTAAAAT
15401496 AGGGATGAGA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.30
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCATCA
Found at i:15408145 original size:43 final size:43
Alignment explanation
Indices: 15408083--15408212 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
15408073 CATAGGATTT
** * *
15408083 TCGATATGTGTTTTTGTGTAAGGCCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACATTGGCA
* * *
15408126 TCGATTTGTGTTTACGTGTAAGACCATGTCTGGGACATTGGTA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
15408169 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACATTGGCA
15408212 T
1 T
15408213 TGTACGAGCC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (43 bp):
TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:15417727 original size:16 final size:17
Alignment explanation
Indices: 15417696--15417728 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15417686 ATAAAACTAC
15417696 TTAATAATGATATTAAAA
1 TTAATAAT-ATATTAAAA
15417714 TTAATAAT-TATTAAA
1 TTAATAATATATTAAA
15417729 GCTAAGGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TTAATAATATATTAAAA
Found at i:15419236 original size:28 final size:27
Alignment explanation
Indices: 15419221--15419276 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
15419211 TATTTCTCAC
15419221 GTCTTGACGGACTTACCTCGTATTTACT
1 GTCTTGACGGACTTACCTC-TATTTACT
*
15419249 GTCTTGACGGACTTACCTCGTGTTTACT
1 GTCTTGACGGACTTACCTC-TATTTACT
15419277 ATCTCGATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (27 bp):
GTCTTGACGGACTTACCTCTATTTACT
Found at i:15419290 original size:28 final size:28
Alignment explanation
Indices: 15419226--15419283 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
15419216 CTCACGTCTT
* * *
15419226 GACGGACTTACCTCGTATTTACTGTCTT
1 GACGAACTTACCTCGTATTTACTATCTC
* *
15419254 GACGGACTTACCTCGTGTTTACTATCTC
1 GACGAACTTACCTCGTATTTACTATCTC
15419282 GA
1 GA
15419284 TTAACTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (28 bp):
GACGAACTTACCTCGTATTTACTATCTC
Found at i:15419595 original size:51 final size:51
Alignment explanation
Indices: 15419540--15419729 Score: 157
Period size: 51 Copynumber: 3.7 Consensus size: 51
15419530 GTTCCATGTC
* * ** *
15419540 GCCATAGCATCTTTCATCCATTGTCTTACGTTATGTACCTTATACCAGACT
1 GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * * *
15419591 GCCATAACCTCTTTCATCTATAGTCTTACGCCATATATCTTATACCAGA-T
1 GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * * * * * * *
15419641 AGTCATAGCCTGTTTAATATATGGTCTTACACAATATACCTTATACTAGACT
1 -GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * * * * *
15419693 ACCATAGCATGTTTCATCTCTACTCTTATGCCATATA
1 GCCATAGCATCTTTCATCTATAGTCTTACGCAATATA
15419730 TCGTCATCAC
Statistics
Matches: 108, Mismatches: 29, Indels: 4
0.77 0.21 0.03
Matches are distributed among these distances:
50 1 0.01
51 106 0.98
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (51 bp):
GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
Found at i:15428440 original size:21 final size:22
Alignment explanation
Indices: 15428394--15428441 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
15428384 AATGCAACCT
*
15428394 TTCTTTAACTTAATCAAAGTAC
1 TTCTTTAACTTAACCAAAGTAC
*
15428416 -TCTTTAACTTAACCCAAGT-C
1 TTCTTTAACTTAACCAAAGTAC
15428436 TTCTTT
1 TTCTTT
15428442 GGAACTGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (22 bp):
TTCTTTAACTTAACCAAAGTAC
Found at i:15431884 original size:9 final size:9
Alignment explanation
Indices: 15431870--15431898 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15431860 TTTAAAGTTT
15431870 AGTAGCTTA
1 AGTAGCTTA
15431879 AGTAGCTTA
1 AGTAGCTTA
15431888 AGTAGC-TA
1 AGTAGCTTA
15431896 AGT
1 AGT
15431899 GTTAGTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (9 bp):
AGTAGCTTA
Found at i:15432337 original size:42 final size:42
Alignment explanation
Indices: 15432251--15432341 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
15432241 CATGACCTGA
* * * **
15432251 GACATGGCCGTGTGATCCAAGTCAGTGAGTTGCACGGGTTAG
1 GACACGGCCGTGTGATCCAAGTCAGTGAGTTACACGAGCAAG
*
15432293 GACACGGCCGTGTG-TCTCAAGTTAGTGAGTTACACGAGCAAG
1 GACACGGCCGTGTGATC-CAAGTCAGTGAGTTACACGAGCAAG
15432335 GACACGG
1 GACACGG
15432342 GCTGGGATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.05
42 40 0.95
ACGTcount: A:0.24, C:0.21, G:0.34, T:0.21
Consensus pattern (42 bp):
GACACGGCCGTGTGATCCAAGTCAGTGAGTTACACGAGCAAG
Found at i:15434961 original size:6 final size:6
Alignment explanation
Indices: 15434950--15434975 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
15434940 CTATTTTAGT
15434950 GGCATA GGCATA GGCATA GGCATA GG
1 GGCATA GGCATA GGCATA GGCATA GG
15434976 GAGAGCAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.38, T:0.15
Consensus pattern (6 bp):
GGCATA
Found at i:15439699 original size:16 final size:16
Alignment explanation
Indices: 15439656--15439703 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
15439646 CACGGCTATG
15439656 CCACACG-TCCGTGTGC
1 CCACACGCT-CGTGTGC
* *
15439672 CCATACGTTCGTGTGC
1 CCACACGCTCGTGTGC
*
15439688 CCACATGCTCGTGTGC
1 CCACACGCTCGTGTGC
15439704 TAGGCCGTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 26 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (16 bp):
CCACACGCTCGTGTGC
Found at i:15445018 original size:25 final size:25
Alignment explanation
Indices: 15444967--15445051 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
15444957 TCCTGTACAT
*
15444967 GTATGCTCA-ACGAGCTGTGAA-TCG
1 GTATGCTCACACGAGCTGT-AATTTG
* *
15444991 GTATGCTCACTCGAGTTGTAGA-TTG
1 GTATGCTCACACGAGCTGTA-ATTTG
* *
15445016 GTATGCTCTCACGAGCTGTAATTTA
1 GTATGCTCACACGAGCTGTAATTTG
15445041 GTATGCTCACA
1 GTATGCTCACA
15445052 TGAACTATAG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 11 0.22
25 39 0.78
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAATTTG
Found at i:15450489 original size:26 final size:29
Alignment explanation
Indices: 15450460--15450514 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 29
15450450 TTTAGGGACA
*
15450460 ATATGTGTAT-GTAT-GATTGAT-TTATG
1 ATATGTGTATAGTATAGAATGATATTATG
*
15450486 ATATGTTTATAGTATAGAATGATATTATG
1 ATATGTGTATAGTATAGAATGATATTATG
15450515 TTTAGATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.38
27 4 0.17
28 6 0.25
29 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (29 bp):
ATATGTGTATAGTATAGAATGATATTATG
Found at i:15456395 original size:52 final size:52
Alignment explanation
Indices: 15456315--15456420 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
15456305 TTACATAACT
15456315 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
1 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
*
15456367 TAGTAAGATCATAGTATTACATTCAATTTAACACAATTAGATACAATCCATG
1 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
15456419 TA
1 TA
15456421 CTACTAGCCT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.33
Consensus pattern (52 bp):
TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
Found at i:15456490 original size:28 final size:28
Alignment explanation
Indices: 15456450--15456534 Score: 152
Period size: 28 Copynumber: 3.0 Consensus size: 28
15456440 CTAGAGTATA
*
15456450 AACAACACACGTAAATGCGTTCAGGGGT
1 AACAACACACGTAAATGCGTTCAAGGGT
15456478 AACAACACACGTAAATGCGTTCAAGGGT
1 AACAACACACGTAAATGCGTTCAAGGGT
*
15456506 AACAACACACGTAAATGTGTTCAAGGGT
1 AACAACACACGTAAATGCGTTCAAGGGT
15456534 A
1 A
15456535 CCGAAGTACA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (28 bp):
AACAACACACGTAAATGCGTTCAAGGGT
Found at i:15477285 original size:101 final size:102
Alignment explanation
Indices: 15477158--15477342 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
15477148 AAAGTGATGG
* * * *
15477158 TCACTTGTGTAGTATTATGTGCAGGCTACTACGTGTATCAGA-A-TGATAGGTCGCATGTATAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTATCAGATAGTGAT-GGTCACATGTATAGT
15477221 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * *
15477259 TCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTATCGGATAGTGATGGTCACATTTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTATCAGATAGTGATGGTCACATGTATAGTA
*
15477324 TTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
15477343 TGAACTGGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 37 0.51
102 32 0.44
103 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTATCAGATAGTGATGGTCACATGTATAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:15477321 original size:51 final size:52
Alignment explanation
Indices: 15477150--15477340 Score: 196
Period size: 51 Copynumber: 3.8 Consensus size: 52
15477140 TGAAAGTGAA
* * *
15477150 AGTGAT-GGTCACTTGTGTAGTATTATGTGCAGGCTACTACGTGTATCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
* * * * *
15477200 A-TGATAGGTCGCATGTATAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
* * * * *
15477251 AGCT--TCGATCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTATCGGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
* *
15477302 AGTGAT-GGTCACATTTGTAGTATTATGTGCAGGCTACTA
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
15477341 TGTGAACTGG
Statistics
Matches: 111, Mismatches: 24, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
49 4 0.04
50 38 0.34
51 67 0.60
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
Found at i:15477589 original size:16 final size:16
Alignment explanation
Indices: 15477568--15477599 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15477558 TGATTGAAAG
*
15477568 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
15477584 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
15477600 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:15483029 original size:101 final size:102
Alignment explanation
Indices: 15482909--15483092 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 102
15482899 AAAGTGATGG
* *
15482909 TCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTCCAGGCTAATACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
*
15482972 TCTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
** **
15483010 TCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTACTGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTCCAGGCTAATACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
*
15483075 CTATGTGTAGGCTACTAT
66 CTATGTGCAGGCTACTAT
15483093 TGAACCAGTA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
101 37 0.51
102 32 0.44
103 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTCCAGGCTAATACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:15483030 original size:51 final size:49
Alignment explanation
Indices: 15482906--15483091 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 49
15482896 GTGAAAGTGA
* * *
15482906 TGGTCACGTGTGTAGTACTATGTCCAGGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-T
* * * * *
15482956 AGGTCGCATGTGTAGTTCTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-T
* * * * *
15483006 TCGATCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTACTGGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
*
15483056 GATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
15483092 TTGAACCAGT
Statistics
Matches: 109, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 40 0.37
51 68 0.62
52 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
Found at i:15483339 original size:16 final size:16
Alignment explanation
Indices: 15483318--15483349 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15483308 TGATTGAAAG
*
15483318 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
15483334 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
15483350 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:15487310 original size:5 final size:5
Alignment explanation
Indices: 15487300--15487342 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
15487290 AATTAATTAA
15487300 TTATT TTA-T TTATT TTATT TTCATGCT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TT-AT--T TTATT TTATT TTATT T
15487343 ATTCTCTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 4 0.12
5 23 0.68
6 2 0.06
7 2 0.06
8 3 0.09
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (5 bp):
TTATT
Found at i:15487544 original size:14 final size:13
Alignment explanation
Indices: 15487507--15487562 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
15487497 GTAGGTTTTT
15487507 TTTTTCTTT-TTA
1 TTTTTCTTTATTA
**
15487519 TTTATTGATTATTA
1 TTT-TTCTTTATTA
15487533 TTTTTCTCTTATTA
1 TTTTTCT-TTATTA
*
15487547 TTATTCTTT-TTA
1 TTTTTCTTTATTA
15487559 TTTT
1 TTTT
15487563 GTTACTACTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 9 0.26
13 8 0.23
14 18 0.51
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTTTCTTTATTA
Found at i:15489026 original size:5 final size:6
Alignment explanation
Indices: 15488957--15489026 Score: 50
Period size: 6 Copynumber: 11.5 Consensus size: 6
15488947 GTATTATTGA
* * * * * *
15488957 TTTTATT TTTTCT TTTTAG TTTTAG TATTAG TTTTAT TTTTAT GTTTAT
1 TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* **
15489006 GTCCAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTT
15489027 CTTAGACTTT
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
6 47 0.92
7 4 0.08
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.73
Consensus pattern (6 bp):
TTTTAT
Found at i:15493455 original size:12 final size:12
Alignment explanation
Indices: 15493434--15493468 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15493424 CACATAAGCC
*
15493434 AAACACAAAAAA
1 AAACAAAAAAAA
15493446 AAACAAAAAAAA
1 AAACAAAAAAAA
*
15493458 AACCAAAAAAA
1 AAACAAAAAAA
15493469 TAGGAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACAAAAAAAA
Found at i:15493456 original size:11 final size:11
Alignment explanation
Indices: 15493434--15493468 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
15493424 CACATAAGCC
15493434 AAACACAAAAAA
1 AAACA-AAAAAA
15493446 AAACAAAAAAA
1 AAACAAAAAAA
*
15493457 AAACCAAAAAA
1 AAACAAAAAAA
15493468 A
1 A
15493469 TAGGAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (11 bp):
AAACAAAAAAA
Found at i:15493480 original size:15 final size:15
Alignment explanation
Indices: 15493462--15493492 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15493452 AAAAAAAACC
*
15493462 AAAAAAATAGGAAAT
1 AAAAAAATAGAAAAT
15493477 AAAAAAATAGAAAAT
1 AAAAAAATAGAAAAT
15493492 A
1 A
15493493 TGTTCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAAAAAATAGAAAAT
Found at i:15498515 original size:10 final size:10
Alignment explanation
Indices: 15498500--15498524 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15498490 GAATCTGTTG
15498500 AAAATAAATC
1 AAAATAAATC
15498510 AAAATAAATC
1 AAAATAAATC
15498520 AAAAT
1 AAAAT
15498525 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:15499709 original size:18 final size:18
Alignment explanation
Indices: 15499654--15499713 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
15499644 TGGTGAATTA
*
15499654 TATTATTATGGCGAACTG
1 TATTAATATGGCGAACTG
* * * *
15499672 TGTTAATCTGG-TATCTG
1 TATTAATATGGCGAACTG
15499689 TATTAATATGGCGAACTG
1 TATTAATATGGCGAACTG
15499707 TATTAAT
1 TATTAAT
15499714 TTGCCAAACC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 13 0.41
18 19 0.59
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (18 bp):
TATTAATATGGCGAACTG
Found at i:15500414 original size:17 final size:17
Alignment explanation
Indices: 15500374--15500422 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
15500364 TGATGTGGTA
* *
15500374 TGAATGAATTATTATAT
1 TGAATGAATTGTTATAG
15500391 TGAATGAATTGTTATAG
1 TGAATGAATTGTTATAG
* *
15500408 TGTATGAACTGTTAT
1 TGAATGAATTGTTAT
15500423 TTTATGTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (17 bp):
TGAATGAATTGTTATAG
Found at i:15504341 original size:44 final size:44
Alignment explanation
Indices: 15504275--15504365 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
15504265 AACTCTGTTT
*
15504275 TTAGTTTACCACTTAAATTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
*
15504319 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
15504363 TTA
1 TTA
15504366 TTTGACCTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
Found at i:15507361 original size:46 final size:47
Alignment explanation
Indices: 15507261--15507371 Score: 143
Period size: 46 Copynumber: 2.4 Consensus size: 47
15507251 GTGGTTTAAC
* *
15507261 CACATATTTGTTCTAGCAACTTGACTACAAATATAGTGGCTTGACCA
1 CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
* * *
15507308 CACATATCTGTTCTGGCAGCTTGACTGC-AATATAGTGGCTTGACTA
1 CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
* **
15507354 CATATATCTAATCTGGCA
1 CACATATCTGTTCTGGCA
15507372 TTTTAACTGC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 32 0.57
47 24 0.43
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (47 bp):
CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
Found at i:15507381 original size:46 final size:46
Alignment explanation
Indices: 15507290--15507383 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
15507280 CTTGACTACA
** *
15507290 AATATAGTGGCTTGACCACACATATCTGTTCTGGCAGCTTGACTGC
1 AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
* * **
15507336 AATATAGTGGCTTGACTACATATATCTAATCTGGCATTTTAACTGC
1 AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
15507382 AA
1 AA
15507384 CGGTGGTGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (46 bp):
AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
Found at i:15514534 original size:5 final size:5
Alignment explanation
Indices: 15514514--15514547 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
15514504 ATTTGATGCA
* *
15514514 TTTAT TTAAA TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
15514548 ATGTATGTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:15515732 original size:14 final size:15
Alignment explanation
Indices: 15515709--15515737 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15515699 TATTTAGATG
15515709 TTTTGATTATTAAAT
1 TTTTGATTATTAAAT
15515724 TTTTG-TTATTAAAT
1 TTTTGATTATTAAAT
15515738 ATTCTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTGATTATTAAAT
Found at i:15516002 original size:22 final size:23
Alignment explanation
Indices: 15515976--15516019 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
15515966 TACACGGAAA
15515976 TTTT-AATTAT-TTATTAAATGAT
1 TTTTAAATTATATTA-TAAATGAT
15515998 TTTTACAATTATATTATAAATG
1 TTTTA-AATTATATTATAAATG
15516020 TTATTACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.21
24 12 0.63
25 3 0.16
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (23 bp):
TTTTAAATTATATTATAAATGAT
Found at i:15519811 original size:393 final size:395
Alignment explanation
Indices: 15518624--15527480 Score: 16442
Period size: 393 Copynumber: 22.6 Consensus size: 395
15518614 TTGCTTATAA
* *
15518624 TATTGCTATTGACATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGT-AAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
15518688 ATAGAAAATATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
15518752 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
* *
15518817 TTGTATAAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGAAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* * *
15518882 TTTTCACAAAGGTCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGTAATCACATT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* * *
15518947 TAGATATCTTATTATTATGGCAGTACGTAAAAAGCTTGGCATGCATTTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
15519012 CCTATT
390 CCTATT
15519018 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15519083 ATAGAAAAGATTGG-AAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
15519147 GAAGTTTTTGGACCTATAGTCCAAACACTTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15519212 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15519277 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15519342 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15519407 CTATT
391 CTATT
15519412 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15519477 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15519542 GAAGTTTTTGGA-CTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15519606 TGTATGAAAATGAAATGAAATTGATGAAGT-GTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15519670 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15519735 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTATTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15519800 CTATT
391 CTATT
15519805 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15519870 ATAGAAAAGATTGG-AAAAAT-GAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* * *
15519933 GAAGTTTTTGGACCAGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15519998 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
15520063 TTTCACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15520128 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15520193 CTATT
391 CTATT
* * *
15520198 TATTGCTATACAAATAATAAAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15520263 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
*
15520327 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAA
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
15520392 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
15520457 TTTTCACAAAGGCCTGGCATTGATTATGAATA-AAATATTTTCCTGTGGTGGATACAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
15520521 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
15520586 CCTATT
390 CCTATT
*
15520592 TATTGCTATAGAAATAATAAAA-AAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15520656 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAA-GT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15520720 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15520785 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
15520850 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15520915 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15520980 CTATT
391 CTATT
15520985 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
15521050 ATAGAAAAGATTGG-AAAAAT-GAAAGATGCAATTCAAGCTAAATTGAACTCACTTT-TAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* * *
15521112 GAAGTTTTTGGACCTGTAGTCGAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15521177 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
15521242 TTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15521307 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15521372 CTATT
391 CTATT
* * *
15521377 TATTGCTATAGACATAATAATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15521442 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAG-TAGAATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCT-GAATTGAATTCACTTTCTAAACG
*
15521506 TGAAGTTTTTGGACCTGTAGTCC-AACACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
15521570 TTGTATGAAAAT-AAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAA-GA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
15521633 ATTTCACAAAGGCCT-GCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCATGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* * * *
15521697 TAGATATCATATTAGTATGGCAGTACGTAAAAAGATTGGCACGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
*
15521762 CTTATT
390 CCTATT
* * *
15521768 TATTGTTATAG--A-AGT-AAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
15521828 ATAGAACAGATTGGCAAAAATAGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15521893 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
* *
15521958 TGTATGAAAATGAAATGAAATTGATGAAGTCATAAGATATAAAGCTCGATTTCTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
15522023 TTTCACAAAGGCCTGGCGTTGATT-TGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
* *
15522087 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATACATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
15522152 TTATT
391 CTATT
15522157 TATTGCTATAGAAATAATAAAAG-AAATGAGGATCCTG-GTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15522220 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15522285 GAAGTTTTTGGACCTGTA-TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15522349 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
15522414 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15522479 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGGCATGCAT-TAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15522543 CTATT
391 CTATT
15522548 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
15522613 ATAGAAAAGATTGGCAAAAATGG-AAGATGCAATTCAAGCTGAATTGAATTCACTTTATAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
15522677 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAACCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15522742 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15522807 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15522872 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACAT-
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15522936 CTATT
391 CTATT
15522941 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15523005 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15523070 GAAGTTTTTGGACATGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15523135 TGTATGAAAATGAAAT-AAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15523199 TTTCACAAAGGCCTGGCATTGA-TATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15523263 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15523328 CTATT
391 CTATT
15523333 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCC-GAGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15523396 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15523460 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15523525 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15523590 TTTCACAAAGGCCTGGCATTGATTATGAATA-ACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15523654 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15523719 CTATT
391 CTATT
15523724 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15523789 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15523854 GAAGTTTTTGGA-CTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15523918 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15523983 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15524048 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15524113 CTATT
391 CTATT
*
15524118 TATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
15524183 ATAGAAAAGATTGG-AAAAATGGAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15524247 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAA-GTGTAAAGCCAGTAGGATATAAAT-AGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15524310 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAA-GA-
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
15524373 TTTCACAAAGGCCTGAC-TTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15524437 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTG-CATGCATCTAATGGATGTTGTTACAT-
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15524500 CTATT
391 CTATT
15524505 TATTG-TATAGAAAT-A-AAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15524566 ATAGAAAAGATTGGCAAAAA-GGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15524630 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
15524695 TGTATGAAAATGAAATGAAATTGATGAAGTCATAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
15524760 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15524825 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15524890 CT-TT
391 CTATT
15524894 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15524959 ATAGAAAAG-TTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15525023 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15525088 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15525153 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15525218 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTG-CATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15525282 CTATT
391 CTATT
15525287 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15525352 ATAGAAAAGATTGGCAAAAATGG-AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15525416 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15525481 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15525546 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15525611 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACAT-
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15525675 CTATT
391 CTATT
15525680 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15525744 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15525809 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15525874 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
15525939 TTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15526004 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15526069 CTATT
391 CTATT
*
15526074 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15526138 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15526203 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15526268 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15526333 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15526398 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15526463 CTATT
391 CTATT
15526468 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
15526533 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
15526598 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15526663 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15526728 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
15526793 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15526858 CTATT
391 CTATT
15526863 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
15526928 ATAGAAAAGATTGG-AAAAATGGAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15526992 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15527057 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
15527122 TTTCACAAAGG-CTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
15527186 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
15527251 CTATT
391 CTATT
15527256 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
15527319 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
15527384 GAAGTTTTTGGACCTGTAGTCC-AACACCTAAAGGTG-AAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
15527447 TGTATGAAAATGAAATGAAA-TGATGAAGTCGTAA
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAA
15527481 NNNNNNNNNN
Statistics
Matches: 8245, Mismatches: 157, Indels: 127
0.97 0.02 0.01
Matches are distributed among these distances:
383 130 0.02
384 33 0.00
385 67 0.01
386 133 0.02
387 81 0.01
388 157 0.02
389 259 0.03
390 185 0.02
391 783 0.09
392 1363 0.17
393 2624 0.32
394 1676 0.20
395 753 0.09
396 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (395 bp):
TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
CTATT
Found at i:15539765 original size:782 final size:789
Alignment explanation
Indices: 15537500--15545642 Score: 14871
Period size: 782 Copynumber: 10.4 Consensus size: 789
15537490 AAAAGATTGG
15537500 AAGATGC-ATTCAAGCTG-ATTGAATTCACTTTCTAAACGTGAAG-TTTTGGACCT-TAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15537561 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAAT-AGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15537625 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGAATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15537690 ATGAATAGACATATTTTCATGTGGTAGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15537755 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15537820 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC-AAAA
326 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
15537884 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
391 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
15537949 CCAAACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGAGTATTTGTAT-AAAATGAAATGAAA
456 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
15538012 TTGATGAAGTC-TAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
521 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
*
15538076 GATTATGAATAG-CATATTTTCAT-TGGTGGATG-AATCACGTTTAGATATCTTATTAGTATGGC
586 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
15538138 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
651 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
15538203 AAT-AAAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
716 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
15538266 AAAAATGGA
781 AAAAATGGA
15538275 AAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
1 AAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
15538339 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
65 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
15538404 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
130 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
15538469 TATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
195 TATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
*
15538534 ACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATCCTATTTATTGCTATAGAAATAAT
260 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT
15538599 AAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
325 -AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
15538664 AATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTA
389 AATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTA
15538729 GTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGA
454 GTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGA
15538794 AATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCA
519 AATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCA
15538859 TTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATG
584 TTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATG
15538923 GCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAA
649 GCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAA
15538988 ATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAA-AGAAAAGATTG
714 ATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTG
15539052 GCAAAAATGGA
779 GCAAAAATGGA
15539063 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTT-GACCT-TAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15539126 ACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15539190 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15539255 ATGAATAGACATATTTTCAT-TGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15539319 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15539384 AAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
326 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
*
15539449 TGGAAAGATGCAATTCAAGC-AAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
391 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
15539513 CC-AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
456 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
15539577 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
521 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
15539642 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
586 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
15539707 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
651 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
*
15539772 AATAAAAGAAAATG-GGATCCCGAGTCTAAATCTATTGA-GAATGTAAAAATAGAAAAGATTGGC
716 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
15539835 AAAAATGGA
781 AAAAATGGA
15539844 AAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15539908 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15539973 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15540038 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15540103 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15540168 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG-AAAAA
326 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
15540232 T-GAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
391 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
*
15540295 CCAAACACCTAAA-GTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATGAAAATGAAATGAAA
456 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
*
15540359 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGTCTGGCATT
521 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
*
15540424 GATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
586 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
15540489 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
651 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
*
15540554 AATAATAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
716 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
15540618 AAAAATGGA
781 AAAAATGGA
*
15540627 AAGATGCAATTCAAGCAGAATTGAATT-ACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
*
15540691 GCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15540756 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15540821 ATGAATA-ACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATA-CTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15540884 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
* *
15540949 AAAAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
326 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
15541014 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
391 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
15541079 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
456 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
15541144 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
521 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
*
15541209 GATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
586 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
15541274 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
651 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
15541339 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG-
716 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
15541403 AAAAAT-GA
781 AAAAATGGA
15541411 AAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15541475 ACACCTAAATGTGTAAAGCCAGAAGGATATAAAT-AGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* *
15541539 TGAAGTCGTAAGATATAAA-CTCGATTT-TAGCACAAGGATTTTCACAAAGGTCTGGCATTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15541602 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT-GATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15541666 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15541731 ATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 A-AGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
* *
15541796 ATGGAAAGATGGAATTCAAGCAGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
390 ATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
* *
15541861 TCCAAGCACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATG-A
455 TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
*
15541925 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA-TTTCACAAAGGCCTGACAT
520 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
15541989 TGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
585 TGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
* * * *
15542054 CAGTACGTAAAAAGATTGGCATGCATCTAATGGATGTTGTTACATCTTATTTATTGTTATAG--A
650 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAA
*
15542117 -AGTAAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGT-AAAATAGAAAAGATTGG
715 TAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
15542179 CAAAAAT-GA
780 CAAAAATGGA
*
15542188 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTATAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15542253 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* *
15542318 TGAAGTCATAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15542383 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* * *
15542448 CGTAAAAAGCTTGACATGCATCTAATGGATATTGATACATTCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15542513 AAGAAAATGAGGATCCTCAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
326 AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
*
15542578 TGGAAGGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
391 TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
* *
15542643 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATGGAAATGAAATGAAA
456 CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
15542708 TTGATGAAGTCGTAAGATATAAAGCT-GATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
521 TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
*
15542772 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACATTTAGATATCTTATTAGTATGGC
586 GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
* *
15542837 AGTACGTAAAAAGCTTGACATGTATCTAATGGATGTTGTTACATCCTATTTATTGCTGTAGAAAT
651 AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
* *
15542902 AATAAAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAAATAGAAAAGATTGGC
716 AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
15542967 AAAAATGGA
781 AAAAATGGA
15542976 AAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
1 AAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
*
15543040 AGCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
65 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
*
15543105 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGACATTGAT
130 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
* * *
15543170 TATGAATAGACATATTTTCCTGTGGTGGATGTAATCATGTTTAGATATCTTATTAGTATGGCAGT
195 TATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
* *
15543235 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGTTATAGAAGT-A-
260 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT
15543298 AAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
325 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15543362 ATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
390 ATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
15543427 TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
455 TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
15543492 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
520 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
*
15543557 TCATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
585 TGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
* *
15543622 -TGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTTCTATAGAAA
650 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAA
*
15543686 TAATGAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
715 TAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
15543751 -AAAAAT-GA
780 CAAAAATGGA
*
15543759 AAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15543824 ACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATG-AAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* * * * *
15543888 TGAAGTCGTAAGATATAAAGCGCGATTTGTAGCACAAGGATTTTCACAAAGGTCTGGTACTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15543953 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCATGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15544018 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15544083 ATAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGT-AAAATAGAAAAGATTGGCAAAA
326 A-AGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
*
15544147 ATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
390 ATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
*
15544212 TCCAAGCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
455 TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
*
15544277 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGACAT
520 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
* *
15544342 TGATTATGAATAGACATATTTTCCTGTGGTGGATGTAATCATGTTTAGATATCTTATTAGTATGG
585 TGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
* *
15544407 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGTTATAGAAG
650 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAA
15544472 T-A-AAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
715 TAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
*
15544534 CAAAAATGGT
780 CAAAAATGGA
*
15544544 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTATAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15544609 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* * *
15544674 TGAAGTCGTTAGATATAAAGCTCGATTTGTAGGACAAGGATTTTCACAAAGGCCTGGCATTCATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15544739 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTACTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
*
15544804 CGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT-
*
15544869 AAAGAAAATGAGGATCCTCAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
325 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
* *
15544934 ATAGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAATGTGAAGTTTTTGGACCTGTAG
390 ATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAG
*
15544999 TCCAAACACTTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
455 TCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAA
*
15545064 ATTGATGAAGTTGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
520 ATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCAT
* *
15545129 TGATTGTGAATAGACATATTTTCGTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
585 TGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG
* *
15545194 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCGTATTTTTTGCTATAGAAA
650 CAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAA
* *
15545259 TAATAAAAGAAAATGAGGATCCTAAGTCTAAATCTATTTAGGAATGTAAAAATAGAAAAGATTGG
715 TAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG
15545324 CAAAAATGGA
780 CAAAAATGGA
*
15545334 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTCGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15545399 ACACCTAAAGGTGTAAAGCCAATAGGATATAAATGAGTATTTGTATAAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15545464 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15545529 ATGAATAGACATATTTTCATTTGGTGGATGTAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* * *
15545594 CGTAAAAAGCTTGTCATGCATCAAATGGATATTGTTACATCCTATTTAT
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTAT
15545643 ATGGTACACT
Statistics
Matches: 7132, Mismatches: 169, Indels: 119
0.96 0.02 0.02
Matches are distributed among these distances:
775 7 0.00
776 25 0.00
777 90 0.01
778 94 0.01
779 91 0.01
780 272 0.04
781 875 0.12
782 1293 0.18
783 908 0.13
784 468 0.07
785 1191 0.17
786 564 0.08
787 464 0.07
788 396 0.06
789 34 0.00
790 360 0.05
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (789 bp):
AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
AAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAAA
TGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGT
CCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAA
TTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATT
GATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGC
AGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAAT
AATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC
AAAAATGGA
Found at i:15539816 original size:391 final size:395
Alignment explanation
Indices: 15537500--15545642 Score: 14847
Period size: 392 Copynumber: 20.8 Consensus size: 395
15537490 AAAAGATTGG
15537500 AAGATGC-ATTCAAGCTG-ATTGAATTCACTTTCTAAACGTGAAG-TTTTGGACCT-TAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15537561 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAAT-AGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15537625 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGAATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15537690 ATGAATAGACATATTTTCATGTGGTAGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15537755 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT-
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15537819 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGC-AAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15537883 ATGGA
391 ATGGA
15537888 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15537953 ACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGAGTATTTGTAT-AAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15538016 TGAAGTC-TAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15538080 ATGAATAG-CATATTTTCAT-TGGTGGATG-AATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15538142 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT-
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15538206 AAAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15538270 ATGGA
391 ATGGA
15538275 AAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
1 AAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
15538339 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
65 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
15538404 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
130 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
*
15538469 TATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
195 TATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
*
15538534 ACGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATCCTATTTATTGCTATAGAAATAAT
260 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT
15538599 AAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
325 AAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
15538664 AATGGA
390 AATGGA
15538670 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15538735 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15538800 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15538865 ATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15538929 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15538994 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAA-AGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15539058 ATGGA
391 ATGGA
15539063 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTT-GACCT-TAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15539126 ACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15539190 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15539255 ATGAATAGACATATTTTCAT-TGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15539319 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT-
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15539383 AAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15539448 ATGGA
391 ATGGA
*
15539453 AAGATGCAATTCAAGC-AAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCC-A
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15539516 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15539581 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15539646 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15539711 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15539776 AAAGAAAATG-GGATCCCGAGTCTAAATCTATTGA-GAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15539839 ATGGA
391 ATGGA
15539844 AAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15539908 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15539973 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15540038 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15540103 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT-
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15540167 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG-AAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15540231 AT-GA
391 ATGGA
15540235 AAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
*
15540299 ACACCTAAA-GTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* *
15540363 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGTCTGGCATTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15540428 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15540493 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15540558 ATAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15540622 ATGGA
391 ATGGA
*
15540627 AAGATGCAATTCAAGCAGAATTGAATT-ACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
*
15540691 GCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15540756 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15540821 ATGAATA-ACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATA-CTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15540884 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15540949 AAA-AAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15541013 ATGGA
391 ATGGA
15541018 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15541083 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15541148 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15541213 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15541278 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15541343 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG-AAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15541407 AT-GA
391 ATGGA
15541411 AAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15541475 ACACCTAAATGTGTAAAGCCAGAAGGATATAAAT-AGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* *
15541539 TGAAGTCGTAAGATATAAA-CTCGATTT-TAGCACAAGGATTTTCACAAAGGTCTGGCATTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15541602 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT-GATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15541666 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
* *
15541731 ATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15541796 ATGGA
391 ATGGA
* *
15541801 AAGATGGAATTCAAGCAGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15541866 GCACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATG-AATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15541930 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA-TTTCACAAAGGCCTGACATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
15541994 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* * * * *
15542059 CGTAAAAAGATTGGCATGCATCTAATGGATGTTGTTACATCTTATTTATTGTTATAG--A-AGTA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15542121 AAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGT-AAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15542184 AT-GA
391 ATGGA
*
15542188 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTATAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15542253 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* *
15542318 TGAAGTCATAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15542383 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* * *
15542448 CGTAAAAAGCTTGACATGCATCTAATGGATATTGATACATTCTATTTATTGCTATAGAAATAAT-
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15542512 AAAGAAAATGAGGATCCTCAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15542577 ATGGA
391 ATGGA
*
15542582 AGGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15542647 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATGGAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15542712 TGAAGTCGTAAGATATAAAGCT-GATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15542776 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACATTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* *
15542841 CGTAAAAAGCTTGACATGTATCTAATGGATGTTGTTACATCCTATTTATTGCTGTAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
* *
15542906 AAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15542971 ATGGA
391 ATGGA
15542976 AAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
1 AAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCA
*
15543040 AGCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
65 AACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTG
*
15543105 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGACATTGAT
130 ATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGAT
* *
15543170 TATGAATAGACATATTTTCCTGTGGTGGATGTAATCATGTTTAGATATCTTATTAGTATGGCAGT
195 TATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGT
* *
15543235 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGTTATAG--A-AGT
260 ACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAAT
15543297 AAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
325 AAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAA
15543361 AATGGA
390 AATGGA
15543367 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15543432 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15543497 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTCATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15543562 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGG-TGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* *
15543626 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTTCTATAGAAATAATG
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15543691 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGG-AAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15543755 AT-GA
391 ATGGA
*
15543759 AAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15543824 ACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATTTGTATG-AAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* * * * *
15543888 TGAAGTCGTAAGATATAAAGCGCGATTTGTAGCACAAGGATTTTCACAAAGGTCTGGTACTGATC
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
*
15543953 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCATGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
15544018 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15544083 ATAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGT-AAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15544147 ATGGA
391 ATGGA
*
15544152 AAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
*
15544217 GCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15544282 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGACATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15544347 ATGAATAGACATATTTTCCTGTGGTGGATGTAATCATGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* *
15544412 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGTTATAGAAGT-A-A
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
15544475 AAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
*
15544539 ATGGT
391 ATGGA
*
15544544 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTATAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
15544609 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
* * *
15544674 TGAAGTCGTTAGATATAAAGCTCGATTTGTAGGACAAGGATTTTCACAAAGGCCTGGCATTCATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15544739 ATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTTAGATATCTTACTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
*
15544804 CGTAAAAAGCTTGACATGCATCTAATGGATATTGTTACATCCTATTTATTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
*
15544869 AAAGAAAATGAGGATCCTCAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
*
15544934 ATAGA
391 ATGGA
*
15544939 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAATGTGAAGTTTTTGGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
*
15545004 ACACTTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
*
15545069 TGAAGTTGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* *
15545134 GTGAATAGACATATTTTCGTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* *
15545199 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCGTATTTTTTGCTATAGAAATAATA
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
* *
15545264 AAAGAAAATGAGGATCCTAAGTCTAAATCTATTTAGGAATGTAAAAATAGAAAAGATTGGCAAAA
326 AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
15545329 ATGGA
391 ATGGA
*
15545334 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTCGACCTGTAGTCCAA
1 AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
* *
15545399 ACACCTAAAGGTGTAAAGCCAATAGGATATAAATGAGTATTTGTATAAAAATGAAATGAAATTGA
66 ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
15545464 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
131 TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
* * *
15545529 ATGAATAGACATATTTTCATTTGGTGGATGTAATCACGTTTAGATATCTTATTAGTATGGCAGTA
196 ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
* * *
15545594 CGTAAAAAGCTTGTCATGCATCAAATGGATATTGTTACATCCTATTTAT
261 CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTAT
15545643 ATGGTACACT
Statistics
Matches: 7503, Mismatches: 184, Indels: 129
0.96 0.02 0.02
Matches are distributed among these distances:
386 43 0.01
387 327 0.04
388 255 0.03
389 377 0.05
390 842 0.11
391 1244 0.17
392 1527 0.20
393 789 0.11
394 888 0.12
395 1211 0.16
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.30
Consensus pattern (395 bp):
AAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGTGAAGTTTTTGGACCTGTAGTCCAA
ACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATTTGTATGAAAATGAAATGAAATTGA
TGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGATTTTCACAAAGGCCTGGCATTGATT
ATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTTAGATATCTTATTAGTATGGCAGTA
CGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATCCTATTTATTGCTATAGAAATAATA
AAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAAATAGAAAAGATTGGCAAAA
ATGGA
Found at i:15546617 original size:26 final size:26
Alignment explanation
Indices: 15546588--15546640 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546578 TGGCTAAGGT
15546588 TATTGACCCAACATATCCAGAAGATA
1 TATTGACCCAACATATCCAGAAGATA
15546614 TATTGACCCAACATATCCAGAAGATA
1 TATTGACCCAACATATCCAGAAGATA
15546640 T
1 T
15546641 GTAATTTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.25
Consensus pattern (26 bp):
TATTGACCCAACATATCCAGAAGATA
Found at i:15547459 original size:26 final size:28
Alignment explanation
Indices: 15547417--15547468 Score: 65
Period size: 26 Copynumber: 1.9 Consensus size: 28
15547407 AACTAATAAC
*
15547417 TTTTATATATC-ATTTTTAAA-AATTAA
1 TTTTATATATCAATTTTCAAATAATTAA
15547443 TTTTATATAGT-AATTTTCAAATAATT
1 TTTTATATA-TCAATTTTCAAATAATT
15547469 TCACTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 9 0.41
27 9 0.41
28 4 0.18
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (28 bp):
TTTTATATATCAATTTTCAAATAATTAA
Found at i:15554104 original size:25 final size:25
Alignment explanation
Indices: 15554070--15554119 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
15554060 GAAGCCCAAG
*
15554070 ATACTTTTTTGGGTTTGATGTATAA
1 ATACTTTTTTGGGTCTGATGTATAA
15554095 ATACTTTTTTGGGTCTGATGTATAA
1 ATACTTTTTTGGGTCTGATGTATAA
15554120 TGTACATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.06, G:0.20, T:0.50
Consensus pattern (25 bp):
ATACTTTTTTGGGTCTGATGTATAA
Found at i:15561218 original size:40 final size:40
Alignment explanation
Indices: 15561174--15561261 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
15561164 TGGCATGTCC
* * *
15561174 ACATTACTAGTAACTTCTTTGCATTACTAGCAATTTATCT
1 ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
* * *
15561214 ACATTACTAGTAGCTTATCTGCACTACTGGCAGTTTATCT
1 ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
*
15561254 GCATTACT
1 ACATTACT
15561262 GGTGACTTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (40 bp):
ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
Found at i:15561263 original size:20 final size:20
Alignment explanation
Indices: 15561193--15561261 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
15561183 GTAACTTCTT
*
15561193 TGCATTACTAGCAATTTATC
1 TGCATTACTAGCAGTTTATC
* * *
15561213 TACATTACTAGTAGCTTATC
1 TGCATTACTAGCAGTTTATC
* *
15561233 TGCACTACTGGCAGTTTATC
1 TGCATTACTAGCAGTTTATC
15561253 TGCATTACT
1 TGCATTACT
15561262 GGTGACTTGA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (20 bp):
TGCATTACTAGCAGTTTATC
Found at i:15561278 original size:20 final size:20
Alignment explanation
Indices: 15561255--15561316 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
15561245 AGTTTATCTG
*
15561255 CATTACTGGTGACTTGACCA
1 CATTACTGGTGACTTGTCCA
* **
15561275 CATTACTAGT-AGCTTGTCTG
1 CATTACTGGTGA-CTTGTCCA
15561295 CATTACTGGTGACTTGTCCA
1 CATTACTGGTGACTTGTCCA
15561315 CA
1 CA
15561317 AATAAGAGTG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 1 0.03
20 31 0.94
21 1 0.03
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (20 bp):
CATTACTGGTGACTTGTCCA
Found at i:15565654 original size:44 final size:46
Alignment explanation
Indices: 15565606--15565703 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
15565596 CATTTCCATT
*
15565606 TCCATTTT-GAGAAAACCATATTCATTT-TCAAAT-GATTCAATTTC
1 TCCATTTTGGAGAAAACCATAATCATTTCT-AAATGGATTCAATTTC
* * * *
15565650 TCCATTTTGGAGAAAGCCATAATCATTTCTGAATGGTTTCCATTTC
1 TCCATTTTGGAGAAAACCATAATCATTTCTAAATGGATTCAATTTC
15565696 TCCATTTT
1 TCCATTTT
15565704 TATTCATTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 8 0.17
45 20 0.43
46 18 0.39
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (46 bp):
TCCATTTTGGAGAAAACCATAATCATTTCTAAATGGATTCAATTTC
Found at i:15569874 original size:6 final size:6
Alignment explanation
Indices: 15569865--15569899 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
15569855 AAATAAAATT
15569865 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
15569900 GTCTAAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:15569953 original size:9 final size:9
Alignment explanation
Indices: 15569939--15569968 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15569929 GTAGTGATTC
*
15569939 AATTCGGTT
1 AATTCGGGT
15569948 AATTCGGGT
1 AATTCGGGT
15569957 AATTCGGGT
1 AATTCGGGT
15569966 AAT
1 AAT
15569969 ATATAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (9 bp):
AATTCGGGT
Found at i:15585023 original size:8 final size:9
Alignment explanation
Indices: 15585005--15585037 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15584995 ATTAAAGAAA
15585005 AAATAAAAT
1 AAATAAAAT
15585014 AAAT-AAAT
1 AAATAAAAT
15585022 -AATAAAAT
1 AAATAAAAT
15585030 AAATAAAA
1 AAATAAAA
15585038 ACAATGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 3 0.14
8 8 0.36
9 11 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:15585025 original size:16 final size:16
Alignment explanation
Indices: 15585006--15585036 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15584996 TTAAAGAAAA
15585006 AATAAAATAAATAAAT
1 AATAAAATAAATAAAT
15585022 AATAAAATAAATAAA
1 AATAAAATAAATAAA
15585037 AACAATGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAATAAATAAAT
Found at i:15585047 original size:21 final size:20
Alignment explanation
Indices: 15585004--15585053 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
15584994 AATTAAAGAA
*
15585004 AAAATAAAATAAATAAATAAT
1 AAAAT-AAATAAAAAAATAAT
*
15585025 AAAATAAATAAAAACAATGAT
1 AAAATAAATAAAAA-AATAAT
15585046 AACAATAA
1 AA-AATAA
15585054 TAGTTCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATAAAAAAATAAT
Found at i:15585327 original size:18 final size:18
Alignment explanation
Indices: 15585296--15585330 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15585286 AAATATAAAA
**
15585296 AAATAAATGTATAAATAT
1 AAATAAATAAATAAATAT
15585314 AAATAAATAAATAAATA
1 AAATAAATAAATAAATA
15585331 CAAAGAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
AAATAAATAAATAAATAT
Found at i:15588047 original size:16 final size:16
Alignment explanation
Indices: 15588010--15588051 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
15588000 TTAATCATAT
*
15588010 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
15588026 TT-AAATATATTATAA
1 TTAAAATATATTATAA
15588041 TTAAAATATAT
1 TTAAAATATAT
15588052 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:15588058 original size:14 final size:15
Alignment explanation
Indices: 15588019--15588060 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15588009 TTTAAACATA
*
15588019 ATTATTATTAAATAT
1 ATTATAATTAAATAT
15588034 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
15588048 A-TATAATTTAATA
1 ATTATAATTAAATA
15588061 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:15588178 original size:14 final size:15
Alignment explanation
Indices: 15588129--15588299 Score: 67
Period size: 15 Copynumber: 11.6 Consensus size: 15
15588119 ATAAAATATA
15588129 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15588144 TATTAAATATATTAT
1 AATTAAATATATTAT
15588159 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
* * *
15588172 AATTTAATAAATTCTT
1 AATTAAATATATT-AT
*
15588188 AA-TAATTAATATTAT
1 AATTAAAT-ATATTAT
* * * *
15588203 TATATGAATTTACTCA-
1 AAT-TAAATATA-TTAT
* *
15588219 AATCATAATATATGAT
1 AATTA-AATATATTAT
*
15588235 ACTATAAA-ATA-TA-
1 AAT-TAAATATATTAT
15588248 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15588263 TATTAAATATATTAT
1 AATTAAATATATTAT
15588278 AATT-AATATA-TAT
1 AATTAAATATATTAT
*
15588291 AATTTAATA
1 AATTAAATA
15588300 AAATTCTTAA
Statistics
Matches: 114, Mismatches: 25, Indels: 35
0.66 0.14 0.20
Matches are distributed among these distances:
12 3 0.03
13 20 0.18
14 25 0.22
15 40 0.35
16 20 0.18
17 6 0.05
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15588299 original size:28 final size:28
Alignment explanation
Indices: 15588149--15588299 Score: 67
Period size: 28 Copynumber: 5.1 Consensus size: 28
15588139 ATTATTATTA
*
15588149 AATATATTATAATTAAAATATATAATTT
1 AATATATTATAATTAATATATATAATTT
* * *
15588177 AATAAATTCTTAATAATTAATAT-TATTATATG
1 AAT--A-TATT-ATAATTAATATATATAAT-TT
* * * *
15588209 AATTTACTCA-AATCATAATATATGATACTAT
1 AATATA-TTATAAT--TAATATAT-ATAATTT
* * * *
15588240 AAAATA-TA-AATTAACATAATTATTATTA
1 AATATATTATAATTAATAT-A-TATAATTT
15588268 AATATATTATAATTAATATATATAATTT
1 AATATATTATAATTAATATATATAATTT
15588296 AATA
1 AATA
15588300 AAATTCTTAA
Statistics
Matches: 86, Mismatches: 23, Indels: 28
0.63 0.17 0.20
Matches are distributed among these distances:
27 5 0.06
28 25 0.29
29 10 0.12
30 16 0.19
31 13 0.15
32 17 0.20
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (28 bp):
AATATATTATAATTAATATATATAATTT
Found at i:15588417 original size:14 final size:15
Alignment explanation
Indices: 15588368--15588419 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15588358 ATAAAATATA
15588368 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15588383 TATTAAATATATTAT
1 AATTAAATATATTAT
15588398 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
15588411 AATTTAATA
1 AATTAAATA
15588420 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15588537 original size:14 final size:15
Alignment explanation
Indices: 15588488--15588539 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15588478 ATAAAAGATA
15588488 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15588503 TATTAAATATATTAT
1 AATTAAATATATTAT
15588518 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
15588531 AATTTAATA
1 AATTAAATA
15588540 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15588657 original size:14 final size:15
Alignment explanation
Indices: 15588608--15588659 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15588598 ATAAAAGATA
15588608 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15588623 TATTAAATATATTAT
1 AATTAAATATATTAT
15588638 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
15588651 AATTTAATA
1 AATTAAATA
15588660 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15588795 original size:120 final size:120
Alignment explanation
Indices: 15588013--15588784 Score: 1413
Period size: 120 Copynumber: 6.4 Consensus size: 120
15588003 ATCATATTTA
15588013 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
15588078 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
15588133 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAAT-AAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
15588197 TATTATTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
*
15588252 AACATAATTATTATTAAATATATTATAATTAATATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
15588317 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
15588372 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
15588437 TTTTATTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
15588492 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
15588557 TATTCTTATATGAATTTACTCAAATCATAACATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
15588612 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
15588677 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
* * *
15588732 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
15588785 TAAAATAATT
Statistics
Matches: 635, Mismatches: 15, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 117 0.18
120 516 0.81
121 2 0.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
Found at i:15588855 original size:26 final size:28
Alignment explanation
Indices: 15588825--15588885 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
15588815 TATGAATTTG
*
15588825 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
15588851 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
15588879 TAAAATT
1 TATAATT
15588886 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:15588895 original size:91 final size:90
Alignment explanation
Indices: 15588800--15589007 Score: 299
Period size: 91 Copynumber: 2.3 Consensus size: 90
15588790 TAATTATAAC
* * * * *
15588800 TAATAAATTATATTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
15588865 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
*
15588891 TAATAAATTTTCTTATATGAATTTATACAGTTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
15588956 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
*
15588982 TCATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
15589008 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
91 84 0.80
92 21 0.20
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:15588982 original size:47 final size:47
Alignment explanation
Indices: 15588844--15588982 Score: 128
Period size: 47 Copynumber: 3.0 Consensus size: 47
15588834 AAATAATTAT
* * *
15588844 TATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
* * * * **
15588891 TAATAAAT-T--TTCTTAT-ATGAATTTATACAGTT--TAAAATAATTAA
1 TATTAAATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAA
15588935 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
15588982 T
1 T
15588983 CATAAAATGT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 22 0.32
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (47 bp):
TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
Found at i:15590378 original size:7 final size:7
Alignment explanation
Indices: 15590366--15590415 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
15590356 AAACTATAAC
15590366 TTAAAAT
1 TTAAAAT
15590373 TTAAAAT
1 TTAAAAT
15590380 TTAAAAT
1 TTAAAAT
* *
15590387 TATAACAC
1 T-TAAAAT
**
15590395 AAAAAAT
1 TTAAAAT
15590402 TTAAAAT
1 TTAAAAT
15590409 TTAAAAT
1 TTAAAAT
15590416 GAGAAGAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
7 30 0.88
8 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (7 bp):
TTAAAAT
Found at i:15593315 original size:10 final size:10
Alignment explanation
Indices: 15593300--15593332 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
15593290 ATTTTTTTAC
15593300 AATTTCTTTG
1 AATTTCTTTG
15593310 AATTTCTTTG
1 AATTTCTTTG
15593320 AATTT-TTT-
1 AATTTCTTTG
15593328 AATTT
1 AATTT
15593333 AAGTTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 15 0.65
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (10 bp):
AATTTCTTTG
Found at i:15593882 original size:23 final size:23
Alignment explanation
Indices: 15593843--15593905 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
15593833 TGTACTGACT
15593843 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
15593866 CAGAC-AATCAA-AACAATTTCCAG
1 -A-ACAAATCAAGAACAATTTCCAG
15593889 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
15593906 ATCAAAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.06
22 7 0.19
23 18 0.50
24 7 0.19
25 2 0.06
ACGTcount: A:0.54, C:0.22, G:0.08, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:15598433 original size:43 final size:43
Alignment explanation
Indices: 15598385--15598536 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
15598375 GCCCCGACGT
* * *
15598385 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAAACACATATCGATGCCACTGTCCCAGACAG
* * * * * *
15598428 GGTCTTACAC-AAATCAAATA-CGATGCCAATGTCCTAGATAT
1 GGTCTTACACGAAAACACATATCGATGCCACTGTCCCAGACAG
* *
15598469 GGTCTTACACGTAAACACA-AGTTGATGCCAAC-GTCCCAGAC-G
1 GGTCTTACACGAAAACACATA-TCGATGCC-ACTGTCCCAGACAG
15598511 TGGTCTTACACGAAAACACATATCGA
1 -GGTCTTACACGAAAACACATATCGA
15598537 AATCCTATGT
Statistics
Matches: 86, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 28 0.33
42 13 0.15
43 43 0.50
44 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAAACACATATCGATGCCACTGTCCCAGACAG
Found at i:15608329 original size:8 final size:9
Alignment explanation
Indices: 15608307--15608336 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15608297 GAGTGTCCAA
15608307 TAAAAATTT
1 TAAAAATTT
15608316 TAAAAATTT
1 TAAAAATTT
*
15608325 TAAAATTTT
1 TAAAAATTT
15608334 TAA
1 TAA
15608337 GAGTTTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TAAAAATTT
Found at i:15612324 original size:17 final size:17
Alignment explanation
Indices: 15612302--15612335 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15612292 GGATTTAACC
15612302 ATCCTTACTGAAAAACT
1 ATCCTTACTGAAAAACT
15612319 ATCCTTACTGAAAAACT
1 ATCCTTACTGAAAAACT
15612336 CCTTACCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
ATCCTTACTGAAAAACT
Found at i:15612340 original size:15 final size:16
Alignment explanation
Indices: 15612301--15612341 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
15612291 TGGATTTAAC
15612301 CATCCTTACTGAAAAA
1 CATCCTTACTGAAAAA
15612317 CTATCCTTACTGAAAAA
1 C-ATCCTTACTGAAAAA
15612334 C-TCCTTAC
1 CATCCTTAC
15612342 CAACTTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.29
16 1 0.04
17 16 0.67
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (16 bp):
CATCCTTACTGAAAAA
Found at i:15613552 original size:126 final size:126
Alignment explanation
Indices: 15613394--15613787 Score: 594
Period size: 126 Copynumber: 3.1 Consensus size: 126
15613384 AAACAAGAAA
* *
15613394 TACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AATTTTTGCTGACAGTGGATCCTG
1 TACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCATCAA-TTTTGCTGACAGTGCATCCTG
15613458 CTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAAC
65 CTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAAC
* * *
15613520 TACTGTAGAAAAAAAGCGTCCACATGGGAGCTTTTTTCATCAATTTTGTTGACAGTGCATCTTGC
1 TACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTGC
*
15613585 TTGAAGCATTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTTCAGGAAC
66 TTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTA-TTTTTTCAGGAAC
* * *
15613647 TACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTAC
1 TACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTGC
* * * * * * *
15613712 TTGAAGCATTTTTGACATTATCTT-TTTAGAATCGTCTTCTCAAAATTAGTTTTCCTGAAAC
66 TTGAAGCATTTTTGACACTAT-TTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAAC
*
15613773 AACTGTAGAAAAAAA
1 TACTGTAGAAAAAAA
15613788 CAAAATCCTT
Statistics
Matches: 243, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
126 126 0.52
127 115 0.47
128 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (126 bp):
TACTGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTGC
TTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGAAC
Found at i:15613960 original size:33 final size:33
Alignment explanation
Indices: 15613864--15613970 Score: 117
Period size: 34 Copynumber: 3.2 Consensus size: 33
15613854 ACTGAACCCC
* *** *
15613864 AATTTAATTTATTTTCTTAAAAAGTGTAAACCCT
1 AATTTAATTAATTTT-TTAAAAACACTAAAACCT
* *
15613898 AATTTAATTAATTTATTTAAAACCCCTAAAACCT
1 AATTTAATTAATTT-TTTAAAAACACTAAAACCT
15613932 AATTTAATTAATTTTTTAAAAACACT-AAACCTT
1 AATTTAATTAATTTTTTAAAAACACTAAAACC-T
15613965 AATTTA
1 AATTTA
15613971 TTTTTTAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
32 5 0.08
33 17 0.27
34 40 0.63
35 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.42
Consensus pattern (33 bp):
AATTTAATTAATTTTTTAAAAACACTAAAACCT
Found at i:15614032 original size:41 final size:40
Alignment explanation
Indices: 15613983--15614075 Score: 132
Period size: 41 Copynumber: 2.3 Consensus size: 40
15613973 TTTTAAAATT
15613983 CCTAAACCCTAACCCTAAATGATTTTAACAAAACCCTACC
1 CCTAAACCCTAACCCTAAATGATTTTAACAAAACCCTACC
* * *
15614023 CCTACAACCCTAACCCTAATTTATTTTAACAAAACCCTAAC
1 CCTA-AACCCTAACCCTAAATGATTTTAACAAAACCCTACC
* *
15614064 TCTAAACACTAA
1 CCTAAACCCTAA
15614076 AAACCCTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 11 0.23
41 36 0.77
ACGTcount: A:0.41, C:0.33, G:0.01, T:0.25
Consensus pattern (40 bp):
CCTAAACCCTAACCCTAAATGATTTTAACAAAACCCTACC
Found at i:15614638 original size:22 final size:22
Alignment explanation
Indices: 15614612--15614662 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
15614602 CCTTTGATGG
15614612 TTTTTGGAAAA-TAATTTAATTT
1 TTTTTGGAAAACTAATTT-ATTT
* *
15614634 TTTTTGTAAAAGCTAATTTTTTT
1 TTTTTGGAAAA-CTAATTTATTT
15614657 TTTTTG
1 TTTTTG
15614663 CGTTTGGATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.40
23 9 0.36
24 6 0.24
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (22 bp):
TTTTTGGAAAACTAATTTATTT
Found at i:15619547 original size:8 final size:8
Alignment explanation
Indices: 15619534--15619567 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
15619524 CATATATTTC
15619534 AAAAATAA
1 AAAAATAA
15619542 AAAAATAA
1 AAAAATAA
*
15619550 AAAAAAATA
1 AAAAATA-A
15619559 AAAAATAA
1 AAAAATAA
15619567 A
1 A
15619568 TCTGAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:15619561 original size:17 final size:18
Alignment explanation
Indices: 15619534--15619567 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
15619524 CATATATTTC
15619534 AAAAATAAAAAAATAAAA
1 AAAAATAAAAAAATAAAA
15619552 AAAAAT-AAAAAATAAA
1 AAAAATAAAAAAATAAA
15619568 TCTGAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (18 bp):
AAAAATAAAAAAATAAAA
Found at i:15632472 original size:49 final size:49
Alignment explanation
Indices: 15632394--15632487 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
15632384 AGGAAAGGGA
* *
15632394 ACCAAAGTGAAAACCCGCAAAGGGCGCTTTGATTCCTAAA-AAAAAGAAG
1 ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGT-CTAAACAAAAAGAAG
*
15632443 ACCAAAGTGAAAACCCGCAAAGAGTGCTTTGAGTCTAAACAAAAA
1 ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGTCTAAACAAAAA
15632488 ATAATAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 5 0.12
49 36 0.88
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (49 bp):
ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGTCTAAACAAAAAGAAG
Found at i:15634174 original size:44 final size:44
Alignment explanation
Indices: 15633817--15634265 Score: 211
Period size: 44 Copynumber: 10.3 Consensus size: 44
15633807 AAAATGGCAA
** * ***
15633817 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGCGAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAG
* * * *
15633860 ATCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * * *** *
15633904 ATCTTATCTCTCTGAAGTGGCAGTAGAGTAGA-TCGCAT--CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * ** * *
15633945 GTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAATAG
* ** * **
15633991 ATCTTATCTCCCT-AAGTAGTGGTGGAGCAGATAAAAAATGGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAATAATAG
* * * **
15634035 ATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATAAAAAATGGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAATAATAG
** * ** *
15634079 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAGCGAGTA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ATAATAG
* * *
15634122 ATCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * * * * * *
15634166 ATCTTATCTCTCTAAAGTTACAGTAGAGTAGA-TCACAT--CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * ** *
15634207 GTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAATAG
15634253 ATCTTATCTCCCT
1 ATCTTATCTCCCT
15634266 AAGCAATAGT
Statistics
Matches: 309, Mismatches: 81, Indels: 29
0.74 0.19 0.07
Matches are distributed among these distances:
41 53 0.17
43 42 0.14
44 170 0.55
45 16 0.05
46 28 0.09
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
Found at i:15634261 original size:262 final size:262
Alignment explanation
Indices: 15633796--15634284 Score: 816
Period size: 262 Copynumber: 1.9 Consensus size: 262
15633786 GGGTTACAGC
** *
15633796 GGAGCAGATCGAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCGAATAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCGAATAA
* * * *
15633861 TCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGACA
* * *
15633926 GTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
* * *
15633991 ATCTTATCTCCCTAAGTAGTGGTGGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGTAGTA
196 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGTAGTA
15634056 GT
261 GT
* * *
15634058 GGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCGAGTAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCGAATAA
*
15634123 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTACA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGACA
*
15634188 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
15634253 ATCTTATCTCCCTAAGCAATAGTGGAGCAGAT
196 ATCTTATCTCCCTAAGCAATAGTGGAGCAGAT
15634285 CAAAGACCCC
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
262 209 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (262 bp):
GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCGAATAA
TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGACA
GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
ATCTTATCTCCCTAAGCAATAGTGGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGTAGTA
GT
Found at i:15634347 original size:90 final size:90
Alignment explanation
Indices: 15634245--15634423 Score: 268
Period size: 90 Copynumber: 2.0 Consensus size: 90
15634235 CAGACCGAAG
* * *
15634245 AATTATAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTTTCCCTG
1 AATTACAGATCTTATCTCCATAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
15634310 AGCAGCAGTGAAGTAAGTTGAAAAA
66 AGCAGCAGTGAAGTAAGTTGAAAAA
* * * *
15634335 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGACCCTAGCCTTGTCTCGCTG
1 AATTACAGATCTTATCTCCATAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
* * *
15634400 AGCAGTAGTGGAGTAGGTTGAAAA
66 AGCAGCAGTGAAGTAAGTTGAAAA
15634424 TAGCAGATCT
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (90 bp):
AATTACAGATCTTATCTCCATAAGCAATAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
AGCAGCAGTGAAGTAAGTTGAAAAA
Found at i:15634992 original size:44 final size:44
Alignment explanation
Indices: 15634897--15635320 Score: 206
Period size: 44 Copynumber: 9.8 Consensus size: 44
15634887 AAAATGGCAA
** * ***
15634897 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGCGAATA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAG
* * * *
15634940 ATCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * * ***
15634984 ATCTTATCTCTCTGAAGTGGCAGTAGAGTAGA-TCGCAT--TAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * ** * *
15635025 GTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAATAG
* * * **
15635071 ATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATAAAAAATGGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAATAATAG
** * ** *
15635115 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAGCCAGTA-
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ATAATAG
* * * *
15635158 ATCATATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATAAAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * * * * *
15635202 ATCTTATCTCTCTAAAGTTGCAGTAGAGTAGA-TCACAT--CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
* * * ** *
15635243 GTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAATAG
** *
15635289 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGAT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
15635321 CAAAGACCCC
Statistics
Matches: 281, Mismatches: 84, Indels: 31
0.71 0.21 0.08
Matches are distributed among these distances:
41 54 0.19
43 42 0.15
44 126 0.45
45 32 0.11
46 27 0.10
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAG
Found at i:15635257 original size:218 final size:218
Alignment explanation
Indices: 15634876--15635320 Score: 728
Period size: 218 Copynumber: 2.0 Consensus size: 218
15634866 GGGTTACAGC
** * *
15634876 GGAGCAGATCGAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCGAATAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
* * * *
15634941 TCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
* * * *
15635006 GTAGAGTAGATCGCATTAGGTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
*
15635071 ATCTTATCTCCCTAAGTAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
* * *
15635094 GGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAGTAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
*
15635159 TCATATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
*
15635224 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
15635289 ATCTTATCTCCCTAAGCAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
15635312 GGAGCAGAT
1 GGAGCAGAT
15635321 CAAAGACCCC
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
218 209 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (218 bp):
GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
TCATATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
ATCTTATCTCCCTAAGCAGTAGT
Found at i:15635383 original size:90 final size:90
Alignment explanation
Indices: 15635281--15635459 Score: 259
Period size: 90 Copynumber: 2.0 Consensus size: 90
15635271 CAGACCGAAG
* * *
15635281 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTTTCCCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
*
15635346 AGCAACAGTGAAGTAGGTTGAAAAA
66 AGCAACAGTGAAGTAGGTTCAAAAA
* * * *
15635371 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGACCCTAGCTTTGTCTCGCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
** *
15635436 AGCAGTAGTGGAGTAGGTTCAAAA
66 AGCAACAGTGAAGTAGGTTCAAAA
15635460 TAGCAGATCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (90 bp):
AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
AGCAACAGTGAAGTAGGTTCAAAAA
Found at i:15637775 original size:5 final size:5
Alignment explanation
Indices: 15637765--15637801 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
15637755 AGTTATTCAC
*
15637765 TTTTA TTTTA TTTCA TTTTA TTTTA -TTT- TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
15637802 TTATAAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
4 6 0.21
5 22 0.79
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:15637775 original size:15 final size:14
Alignment explanation
Indices: 15637757--15637801 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
15637747 AATTTTTAAG
15637757 TTATTCACTTTTATT
1 TTATTCA-TTTTATT
15637772 TTATTTCATTTTATT
1 TTA-TTCATTTTATT
*
15637787 TTATT-TTTTTATT
1 TTATTCATTTTATT
15637800 TT
1 TT
15637802 TTATAAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 9 0.32
14 2 0.07
15 13 0.46
16 4 0.14
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTATTCATTTTATT
Found at i:15639152 original size:7 final size:7
Alignment explanation
Indices: 15639142--15639171 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
15639132 ATAATAAATA
15639142 ATATTAT
1 ATATTAT
15639149 ATATTAT
1 ATATTAT
15639156 ATATTAT
1 ATATTAT
15639163 ATATTAT
1 ATATTAT
15639170 AT
1 AT
15639172 GTATTAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATATTAT
Found at i:15639643 original size:29 final size:29
Alignment explanation
Indices: 15639585--15639644 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
15639575 CACGGCCATA
* **
15639585 TGTCTGGTCCTGTGAACCACATGGTTGTG
1 TGTCTGGTCCTGTGAACCACACGGGCGTG
*
15639614 TGTCTGG-CCGTGTTAACCACACGGGCGTG
1 TGTCTGGTCC-TGTGAACCACACGGGCGTG
15639643 TG
1 TG
15639645 GGCCATACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.30
Consensus pattern (29 bp):
TGTCTGGTCCTGTGAACCACACGGGCGTG
Found at i:15653238 original size:21 final size:20
Alignment explanation
Indices: 15653202--15653241 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
15653192 GTATATGGTC
15653202 GATTAATTAGTAATATATAT
1 GATTAATTAGTAATATATAT
15653222 GATTATATTA-TACATATATA
1 GATTA-ATTAGTA-ATATATA
15653242 GCATTGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (20 bp):
GATTAATTAGTAATATATAT
Found at i:15660924 original size:18 final size:17
Alignment explanation
Indices: 15660861--15660924 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
15660851 TCTTATGTTA
15660861 ATTTCAAATCGTGTCATTC
1 ATTTCAAATCGT-T-ATTC
* * *
15660880 GTTTCTAAAACATTATTC
1 ATTTC-AAATCGTTATTC
15660898 ATTTACAAATCGTTATTC
1 ATTT-CAAATCGTTATTC
15660916 AATTTCAAA
1 -ATTTCAAA
15660925 AACGTTTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
18 21 0.58
19 10 0.28
20 5 0.14
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTTCAAATCGTTATTC
Found at i:15683075 original size:31 final size:31
Alignment explanation
Indices: 15683040--15683166 Score: 80
Period size: 31 Copynumber: 4.1 Consensus size: 31
15683030 ACATAGTACT
15683040 TGATAAAATATAAACATCAACACATTATGCC
1 TGATAAAATATAAACATCAACACATTATGCC
* * * * *
15683071 TGATACAATATGAACACTGATACATAGTAT--C
1 TGATAAAATATAAACA-TCA-ACACATTATGCC
* * * * *
15683102 TGATAAAATATAATCACCAATACA-TAGTACT
1 TGATAAAATATAAACATCAACACATTA-TGCC
*** *
15683133 TGATAAAATATATTTATCAAAACATTATGCC
1 TGATAAAATATAAACATCAACACATTATGCC
15683164 TGA
1 TGA
15683167 GACAATATGA
Statistics
Matches: 71, Mismatches: 19, Indels: 12
0.70 0.19 0.12
Matches are distributed among these distances:
28 2 0.03
29 4 0.06
30 1 0.01
31 53 0.75
32 4 0.06
33 7 0.10
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (31 bp):
TGATAAAATATAAACATCAACACATTATGCC
Found at i:15683137 original size:62 final size:62
Alignment explanation
Indices: 15683021--15683143 Score: 151
Period size: 62 Copynumber: 2.0 Consensus size: 62
15683011 TAAGATAACA
* * * *
15683021 AACACTGGTACATAGTACTTGATAAAATATAAACATCAACACATTATGCCTGATACAATATG
1 AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATTATACCTGATAAAATATG
* * *
15683083 AACACTGATACATAGTA-TCTGATAAAATATAATCACCAATACA-TAGTACTTGATAAAATAT
1 AACACTGATACATAGTACT-TGATAAAATATAAACACCAACACATTA-TACCTGATAAAATAT
15683144 ATTTATCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
61 3 0.06
62 49 0.94
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.28
Consensus pattern (62 bp):
AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATTATACCTGATAAAATATG
Found at i:15683188 original size:93 final size:93
Alignment explanation
Indices: 15683029--15683199 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
15683019 CAAACACTGG
* * *
15683029 TACATAGTACTTGATAAAATATAAACATCAACACATTATGCCTGATACAATATGAACACTGATAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
*
15683094 ATAGTATCTGATAAAATATAATCACCAA
66 ATAGTACCTGATAAAATATAATCACCAA
*** * *
15683122 TACATAGTACTTGATAAAATATATTTATCAAAACATTATGCCTGAGACAATATGAATACCGGTAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
15683187 ATAGTACCTGATA
66 ATAGTACCTGATA
15683200 TTTCAAAACC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (93 bp):
TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
ATAGTACCTGATAAAATATAATCACCAA
Found at i:15683420 original size:2 final size:2
Alignment explanation
Indices: 15683413--15683442 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15683403 CCAAGCCAAT
15683413 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
15683443 ATAAAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:15685457 original size:348 final size:348
Alignment explanation
Indices: 15684815--15685524 Score: 1341
Period size: 348 Copynumber: 2.0 Consensus size: 348
15684805 GTTAGTCCAG
* * *
15684815 ACAACCACATGTATGCTTTTTATCTTTTGGAAGTCATTTGCTTTGATACGTAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
15684880 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
15684945 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
15685010 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
*
15685075 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAATC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
*
15685140 TAATATGTTTTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
*
15685163 ACAAGCACATGTATGTTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
*
15685228 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
15685293 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
*
15685358 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
15685423 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
15685488 TAATATGTTCTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
15685511 ACAAGCACAT-TATG
1 ACAAGCACATGTATG
15685525 AAGAAAAACT
Statistics
Matches: 354, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
347 4 0.01
348 350 0.99
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (348 bp):
ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
TAATATGTTCTGTTCTAAAAATT
Found at i:15687873 original size:53 final size:52
Alignment explanation
Indices: 15687786--15687891 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 52
15687776 GGAAAGTCCA
* * * * * *
15687786 TGAATTTTATAAAGTTCTATTTTTGAACTGTCTATGCAAAGTATGTGCGTAC
1 TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
*
15687838 TGAATTTCTGTAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
1 TGAATTT-TATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
15687891 T
1 T
15687892 TGTAAACTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 7 0.15
53 39 0.85
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (52 bp):
TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
Found at i:15688113 original size:20 final size:18
Alignment explanation
Indices: 15688064--15688100 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15688054 ATGATTTTTG
15688064 TGCATAAATTATATTATT
1 TGCATAAATTATATTATT
15688082 TGCATAAATTATATTATT
1 TGCATAAATTATATTATT
15688100 T
1 T
15688101 TCATGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (18 bp):
TGCATAAATTATATTATT
Found at i:15689896 original size:68 final size:67
Alignment explanation
Indices: 15689818--15689954 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 67
15689808 CTATTTATAC
15689818 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
1 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATG-TAACTAGCACTGTAACGTATGTGCGGA
15689883 CTA
65 CTA
15689886 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTAACTAGCACTGTAACGTATGTGCGGAC
1 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTAACTAGCACTGTAACGTATGTGCGGAC
15689951 TA
66 TA
15689953 AT
1 AT
15689955 CTTGTGAAAT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 32 0.46
68 37 0.54
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (67 bp):
ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTAACTAGCACTGTAACGTATGTGCGGAC
TA
Found at i:15693006 original size:70 final size:70
Alignment explanation
Indices: 15692928--15693078 Score: 169
Period size: 70 Copynumber: 2.2 Consensus size: 70
15692918 AACATGCAAA
* * * *
15692928 CTATAAGTATTACGCT-AGTTGTAGCGATACGTGAGTTGTAACTATTATGCGAGCTATAACGATA
1 CTATAAGTATTACG-TGAGTTGTAACAATACATGAGTCGTAACTATTATGCGAGCTATAACGATA
15692992 CACGAC
65 CACGAC
* * * * * *
15692998 CTATAAGTATTATGTGAGTTGTAACAATACATGAGTCGTAAGTATTATGTGAGTTGTAACTATAC
1 CTATAAGTATTACGTGAGTTGTAACAATACATGAGTCGTAACTATTATGCGAGCTATAACGATAC
** *
15693063 GTGAG
66 ACGAC
15693068 CTATAAGTATT
1 CTATAAGTATT
15693079 GTACAAGGTT
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
69 1 0.01
70 66 0.99
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (70 bp):
CTATAAGTATTACGTGAGTTGTAACAATACATGAGTCGTAACTATTATGCGAGCTATAACGATAC
ACGAC
Found at i:15693028 original size:35 final size:34
Alignment explanation
Indices: 15692970--15693078 Score: 110
Period size: 35 Copynumber: 3.1 Consensus size: 34
15692960 GAGTTGTAAC
* * * * *
15692970 TATTATGCGAGCTATAACGATACACGACCTATAAG
1 TATTATGTGAGTTGTAACAATACATGA-CTATAAG
* *
15693005 TATTATGTGAGTTGTAACAATACATGAGTCGTAAG
1 TATTATGTGAGTTGTAACAATACATGACT-ATAAG
* *
15693040 TATTATGTGAGTTGTAACTATACGTGAGCTATAAG
1 TATTATGTGAGTTGTAACAATACATGA-CTATAAG
15693075 TATT
1 TATT
15693079 GTACAAGGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
34 1 0.02
35 59 0.97
36 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (34 bp):
TATTATGTGAGTTGTAACAATACATGACTATAAG
Found at i:15693056 original size:18 final size:18
Alignment explanation
Indices: 15693001--15693078 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 18
15692991 ACACGACCTA
*
15693001 TAAGTATTATGTGAGTTG
1 TAAGTATTACGTGAGTTG
* * * *
15693019 TAA-CAATACATGAGTCG
1 TAAGTATTACGTGAGTTG
*
15693036 TAAGTATTATGTGAGTTG
1 TAAGTATTACGTGAGTTG
* * *
15693054 TAACTA-TACGTGAGCTA
1 TAAGTATTACGTGAGTTG
15693071 TAAGTATT
1 TAAGTATT
15693079 GTACAAGGTT
Statistics
Matches: 43, Mismatches: 15, Indels: 4
0.69 0.24 0.06
Matches are distributed among these distances:
17 25 0.58
18 18 0.42
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (18 bp):
TAAGTATTACGTGAGTTG
Found at i:15694120 original size:23 final size:24
Alignment explanation
Indices: 15694079--15694129 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
15694069 ATTTTATTTT
* * *
15694079 TTTTCTTCTTATTTTTAGATTAGG
1 TTTTCCTCTTATTTTTAGAATAGA
15694103 TTTTCCTCTT-TTTTTAGAATAGA
1 TTTTCCTCTTATTTTTAGAATAGA
15694126 TTTT
1 TTTT
15694130 ATTTTTTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.63
Consensus pattern (24 bp):
TTTTCCTCTTATTTTTAGAATAGA
Found at i:15695447 original size:14 final size:14
Alignment explanation
Indices: 15695428--15695454 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15695418 TTTTGAGATG
15695428 TTAAATTGAATTAA
1 TTAAATTGAATTAA
15695442 TTAAATTGAATTA
1 TTAAATTGAATTA
15695455 TTATGTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
TTAAATTGAATTAA
Found at i:15695816 original size:40 final size:40
Alignment explanation
Indices: 15695739--15695925 Score: 141
Period size: 40 Copynumber: 4.6 Consensus size: 40
15695729 AAGCTTTATC
*
15695739 CCTAGCAGCCTTCGTGTCGGTGTTTTTATCAGTCTTAGTG
1 CCTAGCAGCCTTCGTGTCGGTGTATTTATCAGTCTTAGTG
* *
15695779 CCTAGCAGCGTTCGTGTCGGTGTATTTATTGAG-CTTAGTG
1 CCTAGCAGCCTTCGTGTCGGTGTATTTA-TCAGTCTTAGTG
* * * * *
15695819 CCTAGTTAAG-CTTCATGCCAGTGTATTTTATCAGGC-TATGTG
1 CCTAG--CAGCCTTCGTGTCGGTGTA-TTTATCAGTCTTA-GTG
* * * * * *
15695861 CCTAGCAGGCTTTGTG-CTGGTGTAGTTATCGGGCTTAATG
1 CCTAGCAGCCTTCGTGTC-GGTGTATTTATCAGTCTTAGTG
*
15695901 CCTAGCAAG-CTTCGTGTTGGTGTAT
1 CCTAGC-AGCCTTCGTGTCGGTGTAT
15695926 CAAATTATCT
Statistics
Matches: 117, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
40 69 0.59
41 33 0.28
42 15 0.13
ACGTcount: A:0.16, C:0.19, G:0.27, T:0.37
Consensus pattern (40 bp):
CCTAGCAGCCTTCGTGTCGGTGTATTTATCAGTCTTAGTG
Found at i:15695883 original size:82 final size:80
Alignment explanation
Indices: 15695758--15695913 Score: 183
Period size: 82 Copynumber: 1.9 Consensus size: 80
15695748 CTTCGTGTCG
* * * *
15695758 GTGTTTTTATCAGTCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTATTTATTGAGCTTAGTGCCTA
1 GTGTTTTTATCAGGCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTAGTTATCGAGCTTAATGCCTA
*
15695823 GTTAAGCTTCATGCCA
66 G-CAAGCTTCATGCCA
* *
15695839 GTGTATTTTATCAGGC-TATGTGCCTAGCAG-GCTTTGTG-CTGGTGTAGTTATCGGGCTTAATG
1 GTGT-TTTTATCAGGCTTA-GTGCCTAGCAGCG-TTCGTGTC-GGTGTAGTTATCGAGCTTAATG
15695901 CCTAGCAAGCTTC
62 CCTAGCAAGCTTC
15695914 GTGTTGGTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.38
Consensus pattern (80 bp):
GTGTTTTTATCAGGCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTAGTTATCGAGCTTAATGCCTA
GCAAGCTTCATGCCA
Found at i:15696800 original size:21 final size:21
Alignment explanation
Indices: 15696774--15696820 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
15696764 CGTACATAGG
*
15696774 CATGTGAAGTAGTCACACGAA
1 CATGTGAAGTAGCCACACGAA
*
15696795 CATGTGAAGTAGCCACACGAC
1 CATGTGAAGTAGCCACACGAA
15696816 CATGT
1 CATGT
15696821 CTTGAGCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (21 bp):
CATGTGAAGTAGCCACACGAA
Found at i:15706548 original size:23 final size:23
Alignment explanation
Indices: 15706513--15706575 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 23
15706503 CAAGAATGAT
15706513 AAAAGAAATAATAAAATAACAA-G
1 AAAA-AAATAATAAAATAACAACG
*
15706536 AAAAAAATAAATATAAAATAATAACG
1 AAAAAAAT--A-ATAAAATAACAACG
*
15706562 AAAATAATAATAAA
1 AAAAAAATAATAAA
15706576 TGAGCAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 9 0.26
24 2 0.06
25 11 0.32
26 8 0.24
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (23 bp):
AAAAAAATAATAAAATAACAACG
Found at i:15706551 original size:25 final size:27
Alignment explanation
Indices: 15706513--15706571 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
15706503 CAAGAATGAT
*
15706513 AAAAGAAATAATAAAATAACAA-GAAA
1 AAAATAAATAATAAAATAACAACGAAA
*
15706539 AAAATAAAT-ATAAAATAATAACGAAA
1 AAAATAAATAATAAAATAACAACGAAA
*
15706565 ATAATAA
1 AAAATAA
15706572 TAAATGAGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (27 bp):
AAAATAAATAATAAAATAACAACGAAA
Found at i:15708143 original size:40 final size:39
Alignment explanation
Indices: 15708091--15708226 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
15708081 TGCCTAACAA
*
15708091 GCTTTGTACTGGTGTAGTTATTAGGCTTTATGCCTAGTAG
1 GCTTTGTGCTGGTGTAGTTATT-GGCTTTATGCCTAGTAG
* * * * *
15708131 GCTTCGTGCTGGTGTATTTATCGGGC-CTAGTGCCTAGCAG
1 GCTTTGTGCTGGTGTAGTTAT-TGGCTTTA-TGCCTAGTAG
* *
15708171 GCTTTGTG-TCGGTGTAGTTATTGAGATTGATGCCTAGTAG
1 GCTTTGTGCT-GGTGTAGTTATTG-GCTTTATGCCTAGTAG
*
15708211 GCTTTGTGCCGGTGTA
1 GCTTTGTGCTGGTGTA
15708227 TCAAATTGTC
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
39 4 0.05
40 71 0.93
41 1 0.01
ACGTcount: A:0.15, C:0.15, G:0.32, T:0.38
Consensus pattern (39 bp):
GCTTTGTGCTGGTGTAGTTATTGGCTTTATGCCTAGTAG
Found at i:15719428 original size:35 final size:35
Alignment explanation
Indices: 15719389--15719576 Score: 118
Period size: 35 Copynumber: 5.4 Consensus size: 35
15719379 AATGTTTTAC
15719389 GCCCAACGAC-AGTTGGATAAGCCAATGATAAGTGT
1 GCCCAAC-ACTAGTTGGATAAGCCAATGATAAGTGT
* * * * *** *
15719424 GCCCAACACTAGTCGAATAATCGAAT-ATGTTTTGC
1 GCCCAACACTAGTTGGATAAGCCAATGAT-AAGTGT
*
15719459 GCCCAACACTAGTTGGATAAGCCAACGATAAGTGT
1 GCCCAACACTAGTTGGATAAGCCAATGATAAGTGT
* *** * * *
15719494 GCCCAGCACTAGTCAAATAA-TCAACGAT--GTTTT
1 GCCCAACACTAGTTGGATAAGCCAATGATAAG-TGT
* *
15719527 CCGCCTAACACTAGTTGGATAAACCAAAT-ATAAGTGT
1 --GCCCAACACTAGTTGGATAAGCC-AATGATAAGTGT
15719564 GCCCAACACTAGT
1 GCCCAACACTAGT
15719577 CAAATAATCA
Statistics
Matches: 111, Mismatches: 32, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 11 0.10
35 87 0.78
36 5 0.05
37 4 0.04
38 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (35 bp):
GCCCAACACTAGTTGGATAAGCCAATGATAAGTGT
Found at i:15719473 original size:70 final size:69
Alignment explanation
Indices: 15719354--15719612 Score: 317
Period size: 70 Copynumber: 3.7 Consensus size: 69
15719344 ATCTCTTTGC
* *
15719354 GCCCAGCACTAGTCAAATAATCGACA-ATGTTTTACGCCCAACGAC-AGTTGGATAAGCCAATGA
1 GCCCAACACTAGTCAAATAATC-A-ATATGTTTTGCGCCCAAC-ACTAGTTGGATAAGCCAATGA
15719417 TAAGTGT
63 TAAGTGT
* *
15719424 GCCCAACACTAGTCGAATAATCGAATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAACGATA
1 GCCCAACACTAGTCAAATAATC-AATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAATGATA
15719489 AGTGT
65 AGTGT
* * * * *
15719494 GCCCAGCACTAGTCAAATAATCAACGATGTTTTCCGCCTAACACTAGTTGGATAAACCAAAT-AT
1 GCCCAACACTAGTCAAATAATCAA-TATGTTTTGCGCCCAACACTAGTTGGATAAGCC-AATGAT
15719558 AAGTGT
64 AAGTGT
* * *
15719564 GCCCAACACTAGTCAAATAATCAATAAGATTTTTGCACCCAACTCTAGT
1 GCCCAACACTAGTCAAATAATCAATATG--TTTTGCGCCCAACACTAGT
15719613 CTGATTAATC
Statistics
Matches: 165, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
69 7 0.04
70 141 0.85
71 17 0.10
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (69 bp):
GCCCAACACTAGTCAAATAATCAATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAATGATAA
GTGT
Found at i:15727895 original size:13 final size:14
Alignment explanation
Indices: 15727879--15727908 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
15727869 ATGCTTGATG
15727879 TTAATTGAA-GTAA
1 TTAATTGAATGTAA
15727892 TTAATTGAATGTAA
1 TTAATTGAATGTAA
15727906 TTA
1 TTA
15727909 TCTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TTAATTGAATGTAA
Done.