Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 55 of 185
Found at i:15734623 original size:15 final size:14
Alignment explanation
Indices: 15734600--15734652 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
15734590 GTTTTTATAT
*
15734600 TAATTATAAAGGTTA
1 TAATAATAAA-GTTA
15734615 TAATAATAAA-TTA
1 TAATAATAAAGTTA
*
15734628 TATATTATAAAGTTA
1 TA-ATAATAAAGTTA
*
15734643 TTATAATAAA
1 TAATAATAAA
15734653 AACAAAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 14 0.44
15 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
TAATAATAAAGTTA
Found at i:15737812 original size:13 final size:13
Alignment explanation
Indices: 15737794--15737823 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15737784 GCATATCTTT
*
15737794 TATTGTATTTTAA
1 TATTGTATTTGAA
15737807 TATTGTATTTGAA
1 TATTGTATTTGAA
15737820 TATT
1 TATT
15737824 CATATTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (13 bp):
TATTGTATTTGAA
Found at i:15740463 original size:51 final size:51
Alignment explanation
Indices: 15740341--15740520 Score: 161
Period size: 51 Copynumber: 3.5 Consensus size: 51
15740331 GATGTTCATG
* * * * *
15740341 TGTGTAGTACTATGTGCAGGCTACTATGTC-TACCAGAATGGT-A-GGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATG-CGTATC-GGATAGTAATGATCACA
* * * ** *
15740391 TGTTTAGTGCTATGTACAGGCTACTATGCGTA-CGGGATAGTTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GGATAGTAATGATCACA
* * * *
15740442 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGATCACA
*
15740493 TGTGTAGTACTATGTGCAAGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
15740521 TGAACCGAAC
Statistics
Matches: 104, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 7 0.07
50 27 0.26
51 69 0.66
52 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGATCACA
Found at i:15740522 original size:26 final size:26
Alignment explanation
Indices: 15740442--15740522 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
15740432 TTTGATCACG
*
15740442 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
* * * *
15740468 CGTGTA-T-CGGATG-GTAATGGTCAC-A
1 TGTGTAGTAC-TATGTGCAA-GCT-ACTA
15740493 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
15740519 TGTG
1 TGTG
15740523 AACCGAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 3 0.08
25 14 0.36
26 18 0.46
27 4 0.10
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAAGCTACTA
Found at i:15740593 original size:45 final size:45
Alignment explanation
Indices: 15740529--15740615 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
15740519 TGTGAACCGA
* *
15740529 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGATTCCACTGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACTGG
15740574 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCAC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCAC
15740616 CGAGTATCTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACTGG
Found at i:15743284 original size:18 final size:19
Alignment explanation
Indices: 15743261--15743296 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15743251 AACCTTAACA
*
15743261 ATAAAGTTAAATA-ATTTG
1 ATAAAGTAAAATATATTTG
15743279 ATAAAGTAAAATATATTT
1 ATAAAGTAAAATATATTT
15743297 TTGATATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (19 bp):
ATAAAGTAAAATATATTTG
Found at i:15747719 original size:956 final size:955
Alignment explanation
Indices: 15743670--15748638 Score: 6676
Period size: 954 Copynumber: 5.2 Consensus size: 955
15743660 ATTAAACAAG
*
15743670 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGTATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * *
15743735 TTGCTGAGTGCATACAGCTTGTAAGCATGCTACAACATTTGTGCACTG-T--AGCAACATATTTT
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCA-TGTTGCAGCAACATATTTT
* * * * * *
15743797 TTGTTTTAGTTGCAATGTAATTAAGTTTGGTTGAGAATGAACGTTGATGTTGACGTTTTGATCGG
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGG
*
15743862 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGA
195 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTGA
* *
15743927 TTAGTAGGGTTAGTTGAATATTTGGTGAAGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
260 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
* * * * *
15743992 TGAGCTAGCATATCAGTTGTGTAAGGTAGATTGCTTCCTTGCTGCATGTTTGTGACCAAGTAAAT
325 TGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAAT
* * * *
15744057 TGTTCTTTGTTTCTTCCTCATTTGTTCTTTCTATTGTTCTCTTCTTTTGCTGCTCTCAAAAACAC
390 TGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTT-TTTTGCTGCTGTCAAAAACCC
* * * *
15744122 AACAAATGGTATCATGAGTCCAAGTCTTTAAGGGCTTGATTTTGCTTCTGTTGCTTGTTAAGAAA
454 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAA
* * * * * * * *
15744187 GACGAGAAGTTGTTACAGCCTATCATCTTTGTAGGTTACTTGTAAAAAAGACATCACCAGCTCAC
519 GACAAGAAGCTGTTAAAGCCTGTCATCTTTG-AGGCTGCTTGTAAAAAAGACAGCAGCAGCTCAC
* * *
15744252 CCCTGTGAGGCTCCCAGACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTATGTGCAAGAAGA
583 CCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGT-TGTGCATGAAGA
* * *
15744317 CACTCCACAGCAGGACGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAAGAACAAGGC
647 CACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGC
* * * * *
15744382 AAGATGTATTTGAAAGCAAGTAGTCAGCCTAGGCTGTGAAGGAGGAGAAAACTCCATTTGATGAA
712 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAA
* * * *
15744447 CAAATCCTTGGCACAAAAGGCTGGGATAGTCAAGTGTGCGAATAAGATTTGGTTGAGAATGAGGC
777 CAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
* *
15744512 CAAGGTTGAAGATGAATTGCTTGAGCAAGGTCAACTTTAAAAGCATTTTGGGACTGCCAAGCTCA
842 CAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
* * *
15744577 AAAAAACTTGATGAAGGATTGGTATTTGTAGCATGAAGGCCAAGAAGGA
907 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
15744626 GTGTTGAAAATGGCCAACCATGCTGTTGTTATGGTTTTGTTAAAGTGCATGGTACTAAGATAATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* ** *
15744691 TTGTTGAGTGCATACAGATTGTATGCATGTTGCAGCATTTGTG-ATTGCCGCAACAACATATTTT
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCA-TGTTGCAGCAACATATTTT
* *
15744755 AC-ATTTTAGTTGCAATGTAATTTAGTTTGGTTAAGAATTAACTTTGATGTTGATGTTTTGATGG
130 -CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGG
* * *
15744819 GATGATTGAGCTGATAAGTCAGCTTATCCATGTGTACAAGTAATGTTTTAAGAGTTCCAATGCTG
194 GATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTG
*
15744884 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACTATAAATGTATTGTTTTCATATTGA
259 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
* * ** * *
15744949 ATGAGCAAG--TA--AATTGTCTAAAGCAGATCACTTCCTTGCTGTACGTTTGTGTGCAAGTAAA
324 ATGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAA
* * *
15745010 TTGTTCTTTTTTTCTTCCTCCTTTGCTCTCTGTATTGTTCTCTTTTTTTGCTGCTGTCAAAAACC
389 TTGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTC-TTTTTTGCTGCTGTCAAAAACC
* * * * * *
15745075 CAAAAAAATTGTAT-ACTTAGCCCTAA-ACTTTGAGGGCTTG-TTTTACTTCTACTACTTGTTAA
453 C-AACAAATGGTATCA-TGAGCCC-AAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAA
* ** ** *
15745137 AAAAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGAGCTGCACGTAAAAAAGACAATAGCATC
515 GAAAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAG-GCTGCTTGTAAAAAAGACAGCAGCAGC
* * * * * *
15745202 TCACCCTTGTGAGACTCTCAAATAAGCTTGGGATAAGCTGTAGGAGTTTATCGAGTTCGTACATG
579 TCACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTT-GTGCATG
* * * * *
15745267 AAGACACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTATACTGGACATAGGAATA
643 AAGACACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACA
* *
15745332 AGGCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTAAAGGAGGAGAAGAATCCATTTGA
708 AGGCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGA
* *
15745397 TGAACAAATCTTTGGCACAAAAGACTAAGATAGTCAAGTGTGTGAATCAGATTTGGTTGAGAATG
773 TGAACAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATG
*
15745462 AGGCCAAGGTTGAAGATGAATTGCTTGAGCAGGATCAACTTGAAAAGCATTTTGGGACTGCCAAG
838 AGGCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAG
* *
15745527 CTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGGAGGCCAATGAGGA
903 CTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
15745580 GTGTTGAAAATGGCCAACCATGTTGCTGTTATCTTTTTGTTAAAGGGCACGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * *
15745645 TTGTTAAGTGCATACAGATTGTATGCATGTTGCAGTATTTATGCTTGTTGCAGCTACATATTTTC
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * * * *
15745710 TGTTTTAGTTGGAATGTAATTTAGTTTGGCTGAGAATGAACTTTGATGTTGAAGTTTTGATGGAA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* * *
15745775 TGATTGAGCTGATAAGTCAGCTTATCCATGTCTACAAGCAATGTTTTAATAGTCCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTGAT
* * * * *
15745840 TAGTGGGGTTAGTTGACTATTTTGTAATGTATTTTGACTATAAATGTATTGTTTTTATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * * *
15745905 GAGCAAGCATATTAGTTGTGTAAAGAAGATTGCTTTCTTGCTGCACGTTTGTCAGCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* * * * *
15745970 GTTCTTTGTTTCTTCCACCA-TTGTTCTCTGTATTGTTCTATGCTTTTACTGCTGTAAAAAACCC
391 GTTCTTTGTTTCTTCC-TCATTTGTTCTCTGTATTGTTCTCT-TTTTTGCTGCTGTCAAAAACCC
* * * *
15746034 AACGAATGGTATCATGAGCCCAAGTCTTTCAAGGCTT-ATTTTTG-TTGCTACTACTTGTTAAGA
454 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGA-TTTTGCTT-CTGCTACTTGTTAAGA
* * * * *
15746097 AAGACAAGAAGCTATTAAAGCCTATCATCTTTGAGGGTTGCTTGTAAAAAAAGATAGTAGCAGCT
517 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGA-GGCTGCTTGT-AAAAAAGACAGCAGCAGCT
* * * *
15746162 CATCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGAAGTTGATCGAGTTTTGCATGAG
580 CACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTGTGCATGAA
** * * * * *
15746227 GACACTTTATAGTAGGAGGTAGTATGTGCAAGAAAAAATAGGACTATAATGAACAAATGAACAAG
645 GACACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAG
* * * * * * *
15746292 GCAAGATGTATTTGAAGGCAAGTTGTCAACCAAGGTTGTGAAGGACGACAAGATTCTATTTGATG
710 GCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATG
* * *
15746357 AAC-AATCTTTGGCACAAAAGAC-AGGGATAGTCAAGTGTGCAAATCGGATTTGGTTGAGAATAA
775 AACAAATCTTTGGCACAAAAGACTA-GGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGA
* * * *
15746420 GGCCAAGTTTGAAGATGAATTGCTTGAGCAGCGACAACTTGAAAAGCATTTTGGGACAGCCAAGC
839 GGCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGC
* * * *
15746485 TCAAAAAAA-TTGATGAATGATTAGTATTTACAGCATGTAA-GCCAAAGACGA
904 TCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATG-AAGGCCAAGGAGGA
* *
15746536 GTGTTGAAAATGGCCAACCATGCTGCTGTTTTGTTTTTTTTTAAAGTGCATGGTACTATGATGAT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATG-TTTTTGTTAAAGTGCATGGTACTATGATGAT
* * * * *
15746601 TTTGTTGAG-GCTATACTGATTATATGCATGCTGCGGCATTTGTGCATGTTGCAGTAACAGATTT
65 TTTGTTGAGTGC-ATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTT
* * * *
15746665 TCTATTTTAGTTCCAATATAATTTAGTTTGGTTGAGAATGAACATTGATATTGATGTTTTGATGG
129 TCTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGG
* * * *
15746730 GATGATTGAGTTAATAAGTCAACTTATCCATGTGTACAAGCAAAGTTTTAGTAGTTCCAATGCTG
194 GATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTG
*
15746795 ATTAGTGGGGTTAGTTTAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
259 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
* *
15746860 ATTAGCAAGCATATCAGTTGTGTAAAGTAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAA
324 ATGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAA
* * *
15746925 TTGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCCCTTTTTCTGCTGCTGTCAAAATCT
389 TTGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTTTTT-TGCTGCTGTCAAAAACC
* * *
15746990 CAACTAATGGTATCATGAGCCCTAGTCTTTGAGGGCTTGATTTT-CTTCTGCTGCTTGTTGAA-A
453 CAACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTT-AAGA
* ** * * *
15747053 AAGGCAATTAGCTGTTAAAACCTGTCATCTTCGAGGCTGCTTGTAAAAAAGATAGCAGCAGCTCA
517 AAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGCTGCTTGTAAAAAAGACAGCAGCAGCTCA
* * *
15747118 CCCCTGTGAGACTCCCAAACAAGCTTGGCATAAGTTGAAGGAGTTGATGGAGTATGTGCATGAAG
582 CCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGT-TGTGCATGAAG
* * * * **
15747183 ACACTCCAC-GACAAGAGGTAGTATGTGTAAGAAGAAATAGGAGGGTAATGAACAAAGGAACAAG
646 ACACTCCACAG-TAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAG
* * ** * * * * *
15747247 GCAAAATGTAGTTGAAGAAAAGTTACCAACCAAGGATGTGAAGAAGGAGTAGACTCCATTTGATG
710 GCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATG
* * *
15747312 AACAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTACGGATCAGATTTGGTTGAGAATGAT
775 AACAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAG
* * *
15747377 GCCAAGGTTGAAGATGAATTGCTTAAGCAGGGTCAACTTGAAAAGCATTTTGGGACTTCCAAGAT
840 GCCAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCT
* * * * *
15747442 CAAAAAAACTTGATGAGTGATAGGTATTTGCGGCATGAAGACTAAGGAGGA
905 CAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
15747493 GCGTTGAAAATGGCCAGCCATGTTGCTGTTATGTTTTTATTAAAGTGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * * *
15747558 TTGTTGAGTGCCTACAGATTATATGCATGCTGTAGCATTTGTGCATGTTACAACAACATTTTTTT
66 TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * *
15747623 TGTTTTAGTTTCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGG
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* *
15747688 TGATTTAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTGAT
* *
15747753 TAGTAGGGTTAGTTGAATATTTGGTGATGTATTTTGACAATAAATGTATTGTTTTCATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * * *
15747818 GAGCAAGTATATCAGTTGTGTAAAGCAGATTACTTCCTTGCTGAACGTTTGTGAGAAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* * * * *
15747883 GTTCTTTTTTTTCTTTCTCCTTTGTTCTTTGTATTGTTCTCTTCTTTTGCTACTGTCAAAAACCC
391 GTTC-TTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTT-TTTTGCTGCTGTCAAAAACCC
* * **
15747948 AACAAATGGTATCATGATCCCAAGTCTTTGAGGGCTTGTTTTTGCTTCTGCTACTCATTAAGAAA
454 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAA
* * *
15748013 GACAAGAAGTTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGTAGCTCAT
519 GACAAGAAGCTGTTAAAGCCTGTCATCTTTGA-GGCTGCTTGTAAAAAAGACAGCAGCAGCTCAC
* ** * * * * *
15748078 CCCTGTAAGACTCTAAAACAAGCTTGGGATAAGTTGTAGGAGTTAATTGAGTTTGTACATGAAGA
583 CCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAG-TTGTGCATGAAGA
* * * * * *
15748143 CACTCCATAGTAAGAGGGAGTCTATGCAAGAACAAATAGGACTGTAATGAACAAAGGAGCAAGGC
647 CACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGC
*
15748208 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTAAAGGAGGAGAAGACTCCATTTGATGAA
712 AAGATGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAA
* * * * *
15748273 CAAATCTTTGGCACAAAATATTGGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAGTGAGGC
777 CAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
* * * * * *
15748338 GAAGGTTAAAGATGAATTGCTTGAGCAAGGTTAACTTGAAAAGTATTTTGGGACTGCCAAGCTTA
842 CAAGGTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
* *
15748403 AAAAAACTTGATGAATGATTGGCATTTGCAGCATGAAGGCCAAGGAGAA
907 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * * *
15748452 GTGTTGAAAATGACCAACCATGTTGCTGTTTTGTTTTTGTTAAAGTGCATGGTACCATGATAATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* *
15748517 TTGCTGAGTGCATACATG-TTGTATGCATGCTGCAGCATTTGTGCATGTTGTAGCAACATATTTT
66 TTGTTGAGTGCATACA-GATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTT
* * * *
15748581 CTATTTTAGTTACAATGTAATTTAGTTTCGTT-AGGAATAAACTTTGATGATGATGTTT
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGA-GAATGAACTTTGATGTTGATGTTT
15748639 GGTGATGTAT
Statistics
Matches: 3494, Mismatches: 469, Indels: 97
0.86 0.12 0.02
Matches are distributed among these distances:
953 4 0.00
954 869 0.25
955 156 0.04
956 663 0.19
957 705 0.20
958 518 0.15
959 576 0.16
960 3 0.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (955 bp):
GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
TTGTTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTTCCAATGCTGAT
TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
GTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTTTTTTGCTGCTGTCAAAAACCCAA
CAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAAGA
CAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGCTGCTTGTAAAAAAGACAGCAGCAGCTCACCCC
TGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTGTGCATGAAGACACT
CCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAGGAACAAGGCAAGA
TGTATTTGAAGGCAAGTTGCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAACAAA
TCTTTGGCACAAAAGACTAGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGCCAAG
GTTGAAGATGAATTGCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCAAAAA
AACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
Found at i:15748787 original size:22 final size:22
Alignment explanation
Indices: 15748745--15748794 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 22
15748735 AGCAAGTAAA
* *
15748745 TTGTTCTTTGTTTTTTCCTCTT
1 TTGTTCTCTGTTTGTTCCTCTT
15748767 TTGTTCTCTGTATTGTTCTCTTCTT
1 TTGTTCTCTGT-TTGTTC-C-TCTT
15748792 TTG
1 TTG
15748795 CTACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 5 0.22
24 1 0.04
25 7 0.30
ACGTcount: A:0.02, C:0.18, G:0.12, T:0.68
Consensus pattern (22 bp):
TTGTTCTCTGTTTGTTCCTCTT
Found at i:15750601 original size:945 final size:955
Alignment explanation
Indices: 15748637--15750719 Score: 3009
Period size: 945 Copynumber: 2.2 Consensus size: 955
15748627 ATGATGATGT
* *
15748637 TTGGTGATGTATTTTGATGATAAACGTATTGTTTTCATACTGAATGAGCAAGCATATCAGTTGTG
1 TTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGTG
* * ** * *
15748702 TAAAGTAGATTGCTTCATTGTTGCATGTTTGTAAGCAAGTAAATTGTTCTTTGTTTTTTCCTCTT
66 TAAAG-CGATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCTT
*
15748767 TTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAAACCCAAAAAATAGTATCATGAGCCC
130 TTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAAACCCAACAAATAGTATCATGAGCCC
* *
15748832 AAGTCTTTGAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAATCCT
195 AAGTCTTTAAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAAGCCT
*
15748897 GTCATCTTTGAGGGTTGTTTGTAAAAAAGACAGAAGTAGCTCACCCCTATGAGACTCCCAAACAA
260 GTCATCTTTGAGGGTTGCTTGTAAAAAAGACAGAAGTAGCTCACCCCTATGAGACTCCCAAACAA
* *
15748962 GCTTGGGATAAGCTGAAGGAGTTAATCAAGTATGTGCATGAAGACACTCCATAGTAGGAGGGAGT
325 GCTTGGGATAAGCT--AGGAG-T-ATCAAGTATGTGCATGAAGACACTCCACAGTAGAAGGGAGT
* * *
15749027 GTGTGCAAGAACAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGT
386 ATGTGAAAGAAAAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGT
*
15749092 TGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCTCAAAAGAC
451 TGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAAGAC
* *
15749157 TAGGATAGTCAAGTGTGTGAATCAGATTTGGTTGAGAATGAGGCTAAGGTTGAAGATGAATTGCT
516 TAGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGCT
* * *
15749222 TGAGCAGGGTTAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATGAATGATTT
581 TGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATAAATGATTG
* * *
15749287 GTATTTGCAGCATGGAGGCCAATGAGGAGTGTTGAAAAATCGCCAATCATGCTGCTGTTATGTTT
646 GTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCGCCAACCATGCTGCTATTATGTTT
** * * * * * ** *
15749352 TTGTTAGAGTGCATGGTATTATGATGATTTTGTTGAGTGCATACAGATTGTATGCATTCTGTAGT
711 TTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGATTGTATGCATGCTACAGC
* * * *
15749417 ATTTTGTGCATGTTGCAGCAATATATTTTCTGTTTTAGTTGGAATGTAATTTAGTTTGGTTGCAA
776 ATTTTGTGCATGTTGCAACAACATATTTTCTATTTTAGTTGCAATGTAATTTAGTTTGGTTGCAA
* * *
15749482 ATAAACTTTGATGTTGATGTTTTGATGGGATGATTGAGCTGATATGTCAGCTTATCCATGTGTAC
841 ATAAACTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCATGAGTAC
*
15749547 AAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATAT
906 AAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATAG
* *
15749597 TTGGTGATGTATTTTGACT-ATAAATGTATTATTTTCATATTGAATGAGCAAGCATATCAGTTGT
1 TTGGTGATGTATTTTGA-TGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGT
**
15749661 GTAAAGCGTATTGCTTTC-TTGCCACACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTC
65 GTAAAGCG-ATTGC-TTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTC
* * * * *
15749725 TTTTGTTCTTTGTATTGTTCTTTTCTTTTGCTATTGTAAAAAACACAACAAATGGTATCATGAGC
128 TTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAAACCCAACAAATAGTATCATGAGC
* * * * *
15749790 CCAAGTCTTTAAAGGCTT-TTTTTGCTTTTGTTGCTTTTTAAGAAAGACAAGACA-TTGTTAAAG
193 CCAAGTCTTTAAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGA-AGCTGTTAAAG
* * *
15749853 CCTGTCATCTTTGAGGGTTGCTTGTAAAACAA-ACAGTAGTAGCTCACCTCTGTGAGACTCCCAA
257 CCTGTCATCTTTGAGGGTTGCTTGTAAAA-AAGACAGAAGTAGCTCACCCCTATGAGACTCCCAA
* * * *
15749917 ACAAGCTTGGGATAAG-T-TGA-T-T-GAGTTTGTGCATGAAGACACTCCACAGTTGAAGGGAGT
321 ACAAGCTTGGGATAAGCTAGGAGTATCAAGTATGTGCATGAAGACACTCCACAGTAGAAGGGAGT
* * * * *
15749977 ATGTGAAAGAAAAAATGGGACTGTAATGAACAAAGGAGCAAT-GCTAGATGTATTTGAAGGCAAG
386 ATGTGAAAGAAAAAATAGGACTATAATGAACAAAAGA-AAATGGCAAGATGTATTTGAAGGCAAG
*
15750041 TTGCCAACCAAGGCTGTGAAGGA-G-G-AGACTCCATTTGATGAACAAATCTTTGGCACAAAAGA
450 TTGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAAGA
* * *
15750103 TTGGGATAGTCAAGTGTGCGAATCTGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGC
515 CTAGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGC
* * * *
15750168 TTGAGCAGGGTCAACTTGAAACGCATTTTGGGACTGCTAGGCTCAAAAAAAACTTGATAAATGAT
580 TTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTC-AAAAAAACTTGATAAATGAT
*
15750233 TGGTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTG-AAAAT-GACCAACCAT-CTTGCTATTTT
644 TGGTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCG-CCAACCATGC-TGCTATTAT
* * *
15750295 GTTTTTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTTAATATATATTGTATGCATGCTA
707 GTTTTTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGATTGTATGCATGCTA
*
15750360 CAGCA-TTTGTGTATGTT-CAACAACATATTTTCTATTTTAGTTGCAATGTAATTTAGTTTGGTT
772 CAGCATTTTGTGCATGTTGCAACAACATATTTTCTATTTTAGTTGCAATGTAATTTAGTTTGGTT
* *
15750423 G-AGAATGAACTTTGATGTTGATGTTTTGATAGGATGATTGAGTTGATAAGTCAGCTTATCCATG
837 GCA-AATAAACTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCATG
* * * *
15750487 AGTACAAGCAATGTTTTAATAGTTCCAATGTTGATTAGTGGGGTTAGTTGAATAG
901 AGTACAAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATAG
*
15750542 TTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGTATATCAGTTGTG
1 TTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGTG
* *
15750607 TAAAGCAGATTGCTTCTTTGCTGCACATATGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCTT
66 TAAAGC-GATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCTT
* * * * *
15750672 TTTTTCTCTATATTATTCTCTTCTTTTGCTGCTGTCAAAAACCCAACA
130 TTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAAACCCAACA
15750720 CAAGTCGACT
Statistics
Matches: 1007, Mismatches: 103, Indels: 41
0.87 0.09 0.04
Matches are distributed among these distances:
944 5 0.00
945 304 0.30
946 14 0.01
947 210 0.21
948 54 0.05
949 1 0.00
950 108 0.11
951 4 0.00
953 1 0.00
955 2 0.00
958 1 0.00
959 111 0.11
960 188 0.19
961 4 0.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (955 bp):
TTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGTG
TAAAGCGATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCTTT
TGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAAACCCAACAAATAGTATCATGAGCCCA
AGTCTTTAAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAAGCCTG
TCATCTTTGAGGGTTGCTTGTAAAAAAGACAGAAGTAGCTCACCCCTATGAGACTCCCAAACAAG
CTTGGGATAAGCTAGGAGTATCAAGTATGTGCATGAAGACACTCCACAGTAGAAGGGAGTATGTG
AAAGAAAAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGTTGCCA
ACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAAGACTAGGA
TAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGCTTGAGC
AGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATAAATGATTGGTATT
TGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCGCCAACCATGCTGCTATTATGTTTTTCCT
AAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGATTGTATGCATGCTACAGCATTTT
GTGCATGTTGCAACAACATATTTTCTATTTTAGTTGCAATGTAATTTAGTTTGGTTGCAAATAAA
CTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCATGAGTACAAGCA
ATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATAG
Found at i:15752471 original size:20 final size:20
Alignment explanation
Indices: 15752446--15752484 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15752436 CAGTATTATG
* *
15752446 AATAGTAGGGTCAAGTCATA
1 AATAGTAGAGTCAAATCATA
15752466 AATAGTAGAGTCAAATCAT
1 AATAGTAGAGTCAAATCAT
15752485 GAACAGTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26
Consensus pattern (20 bp):
AATAGTAGAGTCAAATCATA
Found at i:15752937 original size:31 final size:31
Alignment explanation
Indices: 15752901--15752969 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
15752891 TTTGGGCTAA
*
15752901 GACTAAAATTTAAAAATTTAAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTATAAG
**
15752932 GACTAAAATTTACTAATTCAAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTATAAG
15752963 GACTAAA
1 GACTAAA
15752970 GTTGATCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (31 bp):
GACTAAAATTTAAAAATTCAAAAAGTATAAG
Found at i:15753122 original size:19 final size:20
Alignment explanation
Indices: 15753081--15753125 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
15753071 ATTTTTGTCA
**
15753081 ATAAAGTAATTAATGTAGCG
1 ATAAAGTAATTAATCAAGCG
*
15753101 ATAAA-TAATTAATCAAGTG
1 ATAAAGTAATTAATCAAGCG
15753120 ATAAAG
1 ATAAAG
15753126 AGACTTGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (20 bp):
ATAAAGTAATTAATCAAGCG
Found at i:15753301 original size:72 final size:72
Alignment explanation
Indices: 15753216--15753360 Score: 263
Period size: 72 Copynumber: 2.0 Consensus size: 72
15753206 CTTGTTAAAA
* *
15753216 AAAATTGATTAGAGTTGTAATATAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAATTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
15753281 GAGGTTT
66 GAGGTTT
*
15753288 AAAATTGATTAGAGTTGTAATGCAATTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAATTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
15753353 GAGGTTT
66 GAGGTTT
15753360 A
1 A
15753361 GTATCCAAGA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (72 bp):
AAAATTGATTAGAGTTGTAATACAATTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
GAGGTTT
Found at i:15753726 original size:59 final size:58
Alignment explanation
Indices: 15753637--15753758 Score: 158
Period size: 59 Copynumber: 2.1 Consensus size: 58
15753627 TCAAAAAAGA
*
15753637 TTTCCTTTTATTTTCCCTCCCAAAATTTTTACTT-CTCCCAAACCTCCCTCAAAACTTTTTT
1 TTTCCTTTTATTTT-CCTCCCAAAACTTTTACTTCCTCCCAAA-C-CCC-CAAAACTTTTTT
* * *
15753698 TTTCCTTTTGTTTT-CTCCCAAAACTTTTACTTCCTCCTAAACCGCCAAAACTTTTTT
1 TTTCCTTTTATTTTCCTCCCAAAACTTTTACTTCCTCCCAAACCCCCAAAACTTTTTT
15753755 TTTC
1 TTTC
15753759 AAACTTATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
57 16 0.29
58 2 0.04
59 18 0.32
60 7 0.12
61 13 0.23
ACGTcount: A:0.20, C:0.31, G:0.02, T:0.47
Consensus pattern (58 bp):
TTTCCTTTTATTTTCCTCCCAAAACTTTTACTTCCTCCCAAACCCCCAAAACTTTTTT
Found at i:15755578 original size:23 final size:24
Alignment explanation
Indices: 15755548--15755602 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
15755538 ACGCGAGACA
15755548 CTCATTTACC-CCTTCTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
* *
15755571 CTCATTTACCTCTTTTTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
15755595 CTCATTTA
1 CTCATTTA
15755603 TTGCCTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (24 bp):
CTCATTTACCTCCTTCTTTTCTTC
Found at i:15756231 original size:49 final size:48
Alignment explanation
Indices: 15756174--15756270 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 48
15756164 CCCGGAATGG
*
15756174 CCCAAATATATTATGTTATAAAAGTTAATTAATATAATTAAACCTATTA
1 CCCAAATATATTATGTTATAAAAATTAATT-ATATAATTAAACCTATTA
15756223 CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
1 CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
15756271 ATTATATAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 18 0.38
49 29 0.62
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.39
Consensus pattern (48 bp):
CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
Found at i:15756293 original size:24 final size:21
Alignment explanation
Indices: 15756246--15756294 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 21
15756236 TGTTATAAAA
*
15756246 ATTAATTATATAATTAAACCT
1 ATTAATTATATAATCAAACCT
15756267 ATTAATTATATAACAATCAAACCT
1 ATTAATTATAT---AATCAAACCT
15756291 ATTA
1 ATTA
15756295 CTCAAAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 11 0.46
24 13 0.54
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTAATTATATAATCAAACCT
Found at i:15767366 original size:31 final size:31
Alignment explanation
Indices: 15767320--15767384 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
15767310 GTTTGGGTTA
* *
15767320 CAAATTGAACGTTGAAGCCAAACTT-AGGTAC
1 CAAATTGAACATTGAAACCAAA-TTCAGGTAC
* *
15767351 CAAATTGAATATTGAAACTAAATTCAGGTAC
1 CAAATTGAACATTGAAACCAAATTCAGGTAC
15767382 CAA
1 CAA
15767385 GTAGTATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.25
Consensus pattern (31 bp):
CAAATTGAACATTGAAACCAAATTCAGGTAC
Found at i:15769408 original size:78 final size:78
Alignment explanation
Indices: 15769279--15769444 Score: 323
Period size: 78 Copynumber: 2.1 Consensus size: 78
15769269 ATAATTTCCA
*
15769279 TTTTGGCTGTGGATAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
1 TTTTGGCTGTGGACAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
15769344 GATGAAACCTACT
66 GATGAAACCTACT
15769357 TTTTGGCTGTGGACAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
1 TTTTGGCTGTGGACAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
15769422 GATGAAACCTACT
66 GATGAAACCTACT
15769435 TTTTGGCTGT
1 TTTTGGCTGT
15769445 AGAATTTTAT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 87 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
TTTTGGCTGTGGACAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
GATGAAACCTACT
Found at i:15773205 original size:2 final size:2
Alignment explanation
Indices: 15773198--15773222 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15773188 TATAATTGCT
15773198 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15773223 TCCCCTCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15777751 original size:23 final size:24
Alignment explanation
Indices: 15777704--15777755 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
15777694 TAATCTGCTC
* *
15777704 TATATATGCATGTTTAATATTTAT
1 TATATAAGCATGTTTAATATATAT
*
15777728 TATATAAGCATG-TTGATATATAT
1 TATATAAGCATGTTTAATATATAT
15777751 TATAT
1 TATAT
15777756 CCGGCATCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
TATATAAGCATGTTTAATATATAT
Found at i:15778312 original size:18 final size:19
Alignment explanation
Indices: 15778291--15778327 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15778281 TCTCTGGACT
*
15778291 TTTGGGGTTTT-ATTTTGG
1 TTTGGGATTTTAATTTTGG
15778309 TTTGGGATTTTAATTTTGG
1 TTTGGGATTTTAATTTTGG
15778328 ATTTCTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.11, C:0.00, G:0.30, T:0.59
Consensus pattern (19 bp):
TTTGGGATTTTAATTTTGG
Found at i:15780871 original size:28 final size:29
Alignment explanation
Indices: 15780815--15780872 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
15780805 GGGGTTCGAG
* *
15780815 TTTAGGGTTTGTGATTCTATGTTTGGGGT
1 TTTAGGGTTTGAGATTCTATGTTTAGGGT
15780844 TTTA-GGTTTGAGATTCTA-GATTTAGGGT
1 TTTAGGGTTTGAGATTCTATG-TTTAGGGT
15780872 T
1 T
15780873 CAAGGTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 1 0.04
28 21 0.81
29 4 0.15
ACGTcount: A:0.16, C:0.03, G:0.31, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTGAGATTCTATGTTTAGGGT
Found at i:15780878 original size:28 final size:28
Alignment explanation
Indices: 15780820--15780880 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
15780810 TCGAGTTTAG
* * **
15780820 GGTTTGTGATTCTATGTTTGGGGTTTTA
1 GGTTTGAGATTCTATGTTTAGGGTTCAA
15780848 GGTTTGAGATTCTA-GATTTAGGGTTCAA
1 GGTTTGAGATTCTATG-TTTAGGGTTCAA
15780876 GGTTT
1 GGTTT
15780881 AGGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.16, C:0.05, G:0.31, T:0.48
Consensus pattern (28 bp):
GGTTTGAGATTCTATGTTTAGGGTTCAA
Found at i:15798921 original size:13 final size:13
Alignment explanation
Indices: 15798903--15798979 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
15798893 AGTTCTTCAT
*
15798903 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
15798916 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
15798929 TGTTTTTCAGAAG
1 TGCTTTTCAGAAG
*
15798942 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
15798955 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
15798968 TGCTTTTGAGAA
1 TGCTTTTCAGAA
15798980 ATTTGAATGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.40
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:15798957 original size:39 final size:39
Alignment explanation
Indices: 15798903--15798979 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
15798893 AGTTCTTCAT
*
15798903 TGCTTTTGAGAAGTGCTTTTCAGAAGTGTTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAAG
*
15798942 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTGAGAA
1 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAA
15798980 ATTTGAATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.40
Consensus pattern (39 bp):
TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAAG
Found at i:15799710 original size:21 final size:24
Alignment explanation
Indices: 15799677--15799723 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
15799667 CCCTTTGATT
*
15799677 AAATGTTTGAGAA-TATAAAA-CA
1 AAATATTTGAGAATTATAAAAGCA
15799699 AAATATTT-AGAATTATAAAAGCA
1 AAATATTTGAGAATTATAAAAGCA
15799722 AA
1 AA
15799724 CATAGTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 14 0.64
23 4 0.18
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (24 bp):
AAATATTTGAGAATTATAAAAGCA
Found at i:15800649 original size:29 final size:29
Alignment explanation
Indices: 15800617--15800687 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
15800607 TTAAATTCAG
15800617 TTATCAATAAATTAAACCAAATCAATCAT
1 TTATCAATAAATTAAACCAAATCAATCAT
15800646 TTATCAATAAATTAAACCAAATCAATCAT
1 TTATCAATAAATTAAACCAAATCAATCAT
15800675 TTATCAATAAATT
1 TTATCAATAAATT
15800688 CGCAATCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (29 bp):
TTATCAATAAATTAAACCAAATCAATCAT
Found at i:15807615 original size:33 final size:28
Alignment explanation
Indices: 15807540--15807624 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 28
15807530 TATTGAATAA
15807540 CAAGGGGTTGCTAAGTGCTGATT-CCCC
1 CAAGGGGTTGCTAAGTGCTGATTCCCCC
*
15807567 CAAGGGGTTGGTAAGTGCTGATTCCCCGAC
1 CAAGGGGTTGCTAAGTGCTGATTCCCC--C
*
15807597 TCATTGGTGGTTGCTAAGTGCTGATTCC
1 -CA-AGG-GGTTGCTAAGTGCTGATTCC
15807625 ACCATATCCT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
27 22 0.45
28 3 0.06
30 1 0.02
31 2 0.04
32 2 0.04
33 19 0.39
ACGTcount: A:0.18, C:0.22, G:0.31, T:0.29
Consensus pattern (28 bp):
CAAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:15807666 original size:43 final size:43
Alignment explanation
Indices: 15807605--15807823 Score: 142
Period size: 33 Copynumber: 5.5 Consensus size: 43
15807595 ACTCATTGGT
15807605 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
* * *
15807648 GGTTGTTAAGTGTTGATT-C-CC-TGA--CTCT---T-TG---GT
1 GGTTGCTAAGTGCTGATTCCACCAT-ATCCT-TGAATGTGAAAGG
15807681 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
* * **
15807724 GGTTGCTAA--G-TG-TT--A--AT-TCCTCGAA--TCACTGG
1 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
*
15807756 TGGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTAAAAAAAGGG
1 -GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGT---GAAA-GG
15807804 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
15807824 CCGAATCACT
Statistics
Matches: 132, Mismatches: 14, Indels: 56
0.65 0.07 0.28
Matches are distributed among these distances:
32 4 0.03
33 26 0.20
34 8 0.06
35 6 0.05
36 6 0.05
37 6 0.05
39 6 0.05
40 6 0.05
41 6 0.05
42 8 0.06
43 26 0.20
44 1 0.01
47 21 0.16
48 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAAGG
Found at i:15807694 original size:76 final size:76
Alignment explanation
Indices: 15807568--15807859 Score: 413
Period size: 76 Copynumber: 3.8 Consensus size: 76
15807558 TGATTCCCCC
* * *
15807568 AAGGGGTTGGTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
15807633 CTTGAATGTGA
66 CTTGAATGTGA
* * * * **
15807644 AAGGGGTTGTTAAGTGTTGATTCCCTGACTCTTTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
15807709 CTTGAATGTGA
66 CTTGAATGTGA
* * *
15807720 AAGGGGTTGCTAAGTGTTAATTCCTCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
*
15807785 CTTGAATGTAAAAA
66 CTTGAATGT---GA
* *
15807799 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCACTAGTGGTTGCTAAGTGCTGAATCCACC
1 AA-GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACC
15807860 GATAACGGTT
Statistics
Matches: 195, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
76 139 0.71
79 3 0.02
80 53 0.27
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
CTTGAATGTGA
Found at i:15818780 original size:27 final size:27
Alignment explanation
Indices: 15818744--15818814 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
15818734 CCTAACGGAA
* *
15818744 GTATTATGGTAATTTTACCCATCGAGG
1 GTATTTTGGTAATTTTACCCATCAAGG
* *
15818771 GTATTTTGGTAATTTTACCTATTAAGG
1 GTATTTTGGTAATTTTACCCATCAAGG
**
15818798 GTATTTCAGTAATTTTA
1 GTATTTTGGTAATTTTA
15818815 ACGACCTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACCCATCAAGG
Found at i:15820722 original size:23 final size:22
Alignment explanation
Indices: 15820696--15820747 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
15820686 CCTTCACATG
*
15820696 ATTATATTATATTTATAAAATAA
1 ATTATATT-TATTAATAAAATAA
*
15820719 ATTAATATTTATTAATAATATAA
1 ATT-ATATTTATTAATAAAATAA
*
15820742 AATATA
1 ATTATA
15820748 ACAATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 3 0.12
23 17 0.68
24 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTATATTTATTAATAAAATAA
Found at i:15820753 original size:28 final size:27
Alignment explanation
Indices: 15820709--15820770 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
15820699 ATATTATATT
* **
15820709 TATAAAATAAATTAATATTTATTAATAA
1 TATAAAATAAATCAATATAAATTAA-AA
15820737 TATAAAATATAA-CAATATAAATTAAAA
1 TATAAAATA-AATCAATATAAATTAAAA
15820764 TA-AAAAT
1 TATAAAAT
15820771 TTATCTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 4 0.13
28 19 0.63
29 2 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAAAATAAATCAATATAAATTAAAA
Found at i:15822249 original size:32 final size:32
Alignment explanation
Indices: 15822191--15822251 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
15822181 ACATGTACTC
* ***
15822191 TTTTAAAATTTTAGAATTTTTTATTTTTTATT
1 TTTTAAAATTTTAAAATTTAGAATTTTTTATT
15822223 TTTTAAAATTTTAAAATTTAGAATTTTTT
1 TTTTAAAATTTTAAAATTTAGAATTTTTT
15822252 TTATAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (32 bp):
TTTTAAAATTTTAAAATTTAGAATTTTTTATT
Found at i:15831223 original size:30 final size:30
Alignment explanation
Indices: 15831189--15831250 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
15831179 ACTTATTTTA
15831189 TTGTTAATTTTGTTATTATTTTA-AAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAAG-CAT
15831219 TTGTTAATTTTGTTATTATTTTAGAAGCAT
1 TTGTTAATTTTGTTATTATTTTAGAAGCAT
15831249 TT
1 TT
15831251 ACTTGTTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAGCAT
Found at i:15831811 original size:18 final size:21
Alignment explanation
Indices: 15831774--15831811 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
15831764 GTTGGGTTGG
15831774 ATTAAGTTTATATCATGTTTA
1 ATTAAGTTTATATCATGTTTA
15831795 ATTAA-TTTAT-T-ATGTTT
1 ATTAAGTTTATATCATGTTT
15831812 GGATATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 1 0.06
20 5 0.29
21 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTAAGTTTATATCATGTTTA
Found at i:15833028 original size:36 final size:36
Alignment explanation
Indices: 15832983--15833052 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
15832973 ATTGTGATTT
15832983 TTGTTTTGACTCATGGTCATTAGGATTAGGGGTGAC
1 TTGTTTTGACTCATGGTCATTAGGATTAGGGGTGAC
15833019 TTGTTTTGACTCATGGTCATTAGGATTAGGGGTG
1 TTGTTTTGACTCATGGTCATTAGGATTAGGGGTG
15833053 GAGTCAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.19, C:0.10, G:0.31, T:0.40
Consensus pattern (36 bp):
TTGTTTTGACTCATGGTCATTAGGATTAGGGGTGAC
Found at i:15852309 original size:13 final size:13
Alignment explanation
Indices: 15852291--15852315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15852281 TATTTTAATA
15852291 TTATTTTGTGTGT
1 TTATTTTGTGTGT
15852304 TTATTTTGTGTG
1 TTATTTTGTGTG
15852316 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:15853943 original size:41 final size:41
Alignment explanation
Indices: 15853898--15853999 Score: 161
Period size: 41 Copynumber: 2.5 Consensus size: 41
15853888 GCTTAGCGCT
*
15853898 TAGCAGGCTTATTGCCGGTGAAATACTTCAGACTAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAATACTTCAGACTAAATGTC
* *
15853939 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAATACTTCAGACTAAATGTC
15853980 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
15854000 TACTGAATCA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 3 0.05
41 54 0.95
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAATACTTCAGACTAAATGTC
Found at i:15857891 original size:17 final size:17
Alignment explanation
Indices: 15857844--15857895 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
15857834 CAACATGAAC
*
15857844 AAAT-ATTTTTAAAATA
1 AAATAATTTTTAAAATT
* ** *
15857860 AAAAAATCCTAAAAATT
1 AAATAATTTTTAAAATT
15857877 AAATAATTTTTAAAATT
1 AAATAATTTTTAAAATT
15857894 AA
1 AA
15857896 TTATTTAAAC
Statistics
Matches: 26, Mismatches: 9, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
16 3 0.12
17 23 0.88
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATAATTTTTAAAATT
Found at i:15858148 original size:24 final size:25
Alignment explanation
Indices: 15858118--15858173 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
15858108 TAAAAATTAT
*
15858118 TTATTTTTTA-TAATTTTTAAATAA
1 TTATTTTTTAGGAATTTTTAAATAA
*
15858142 TTA-TTTTTAGGAATTTTTTAATAA
1 TTATTTTTTAGGAATTTTTAAATAA
15858166 TTATTTTT
1 TTATTTTT
15858174 AAAAAATGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 6 0.21
24 18 0.64
25 4 0.14
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (25 bp):
TTATTTTTTAGGAATTTTTAAATAA
Found at i:15858174 original size:24 final size:24
Alignment explanation
Indices: 15858129--15858174 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
15858119 TATTTTTTAT
15858129 AATTTTTAAATAATTATTTTTAGG
1 AATTTTTAAATAATTATTTTTAGG
*
15858153 AATTTTTTAATAATTATTTTTA
1 AATTTTTAAATAATTATTTTTA
15858175 AAAAATGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
AATTTTTAAATAATTATTTTTAGG
Found at i:15861505 original size:2 final size:2
Alignment explanation
Indices: 15861500--15861528 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15861490 AATTATCATG
15861500 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15861529 ACTGAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15865940 original size:21 final size:22
Alignment explanation
Indices: 15865909--15865950 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
15865899 CAATTTCCAA
* *
15865909 TTTTATATTTTTAATCTTCAAG
1 TTTTATATTTTCAATCCTCAAG
15865931 TTTTA-ATTTTCAATCCTCAA
1 TTTTATATTTTCAATCCTCAA
15865951 TTATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTTATATTTTCAATCCTCAAG
Found at i:15867765 original size:63 final size:63
Alignment explanation
Indices: 15867661--15867830 Score: 146
Period size: 63 Copynumber: 2.7 Consensus size: 63
15867651 TGCTTCTAAC
* * * * * * * * * *
15867661 CCAGTTT-TTTTGTCACAATCATCACAGCACACACACTCATTCCCCACATTATCACCTTTAGTA
1 CCAGTTTATTTT-ACACAAGCACCACAACACGCACAATCATTCCCCACATCAACACATTTAGCA
* * ***
15867724 CTAGTTTATTTTATACAA-CTACCACAACACGCACAATCATTCCTTGCATCAACACATTTAGCA
1 CCAGTTTATTTTACACAAGC-ACCACAACACGCACAATCATTCCCCACATCAACACATTTAGCA
* * *
15867787 CCAGTTTATTTTACACAAGCACCACAACATGCCCCATCATTCCC
1 CCAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCC
15867831 TGTATCAACA
Statistics
Matches: 84, Mismatches: 20, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
62 1 0.01
63 78 0.93
64 5 0.06
ACGTcount: A:0.31, C:0.33, G:0.06, T:0.29
Consensus pattern (63 bp):
CCAGTTTATTTTACACAAGCACCACAACACGCACAATCATTCCCCACATCAACACATTTAGCA
Found at i:15867838 original size:63 final size:63
Alignment explanation
Indices: 15867717--15867841 Score: 162
Period size: 63 Copynumber: 2.0 Consensus size: 63
15867707 CATTATCACC
* * * *
15867717 TTTAGTACTAGTTTATTTTATACAACTACCACAACACGCACAATCATTCCTTGCATCAACACA
1 TTTAGCACCAGTTTATTTTACACAACTACCACAACACGCACAATCATTCCCTGCATCAACACA
* * * *
15867780 TTTAGCACCAGTTTATTTTACACAAGC-ACCACAACATGCCCCATCATTCCCTGTATCAACAC
1 TTTAGCACCAGTTTATTTTACACAA-CTACCACAACACGCACAATCATTCCCTGCATCAACAC
15867842 CTCTCCAATG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 52 0.98
64 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (63 bp):
TTTAGCACCAGTTTATTTTACACAACTACCACAACACGCACAATCATTCCCTGCATCAACACA
Found at i:15871636 original size:34 final size:35
Alignment explanation
Indices: 15871584--15871651 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
15871574 AGTTCTGGCT
***
15871584 TTTGTGCCTCTTTTGCTTT-ACTGCTTTGCTTTGC
1 TTTGTGCCTCTACAGCTTTCACTGCTTTGCTTTGC
*
15871618 TTTGTGCCTCTACAGCTTTGCTCTGCTTTGCTTT
1 TTTGTGCCTCTACAGCTTT-CACTGCTTTGCTTT
15871652 AGTGATTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 16 0.57
36 12 0.43
ACGTcount: A:0.04, C:0.25, G:0.18, T:0.53
Consensus pattern (35 bp):
TTTGTGCCTCTACAGCTTTCACTGCTTTGCTTTGC
Found at i:15875117 original size:72 final size:72
Alignment explanation
Indices: 15875032--15875203 Score: 269
Period size: 72 Copynumber: 2.4 Consensus size: 72
15875022 AACAACAATG
* * *
15875032 CTAAA-CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTTCTT
1 CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
15875096 ATTTAT-
66 ATTTATA
* *
15875102 GTATAATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
1 CTA-AATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
15875167 TATTTATA
65 TATTTATA
15875175 CTAAAT-TAGTTTTATCAATAGTTGTTTAT
1 CTAAATCTAGTTTTATCAATAGTTGTTTAT
15875204 ATATGATTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
70 2 0.02
71 24 0.26
72 64 0.70
73 2 0.02
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (72 bp):
CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
ATTTATA
Found at i:15883787 original size:14 final size:14
Alignment explanation
Indices: 15883759--15883834 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
15883749 CTACCCTCTT
*
15883759 ATATTAAATATATA
1 ATATTACATATATA
15883773 TATATATACATATATA
1 -ATAT-TACATATATA
* *
15883789 ATATTACATACAAA
1 ATATTACATATATA
* * *
15883803 ATAATTAGATTTATC
1 AT-ATTACATATATA
*
15883818 ATA-TATATATATA
1 ATATTACATATATA
15883831 ATAT
1 ATAT
15883835 ATTGATTTAT
Statistics
Matches: 47, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
13 10 0.21
14 11 0.23
15 17 0.36
16 9 0.19
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (14 bp):
ATATTACATATATA
Found at i:15885898 original size:42 final size:42
Alignment explanation
Indices: 15885833--15885915 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
15885823 AATATGTGTG
15885833 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
1 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
* *
15885875 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCC
15885916 CTTTGAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (42 bp):
AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
Found at i:15893398 original size:19 final size:19
Alignment explanation
Indices: 15893374--15893414 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15893364 TTATTAATAA
*
15893374 ATTTATTGTTACTATTATT
1 ATTTATTATTACTATTATT
**
15893393 ATTTATTATTGGTATTATT
1 ATTTATTATTACTATTATT
15893412 ATT
1 ATT
15893415 ACACTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
ATTTATTATTACTATTATT
Found at i:15898483 original size:18 final size:17
Alignment explanation
Indices: 15898441--15898514 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 17
15898431 AGTTGAGATC
15898441 AAAATCAAAAGAAAAAA
1 AAAATCAAAAGAAAAAA
*
15898458 TAAA--AAAAGAAGAAAA
1 AAAATCAAAAGAA-AAAA
**
15898474 AAAATCAAAA-TCAAAA
1 AAAATCAAAAGAAAAAA
* *
15898490 ATAA--AAAAGAAGAAA
1 AAAATCAAAAGAAAAAA
15898505 AAAATCAAAA
1 AAAATCAAAA
15898515 TCAAAATCGA
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
14 4 0.10
15 13 0.31
16 14 0.33
17 7 0.17
18 4 0.10
ACGTcount: A:0.80, C:0.05, G:0.07, T:0.08
Consensus pattern (17 bp):
AAAATCAAAAGAAAAAA
Found at i:15898506 original size:31 final size:33
Alignment explanation
Indices: 15898441--15898540 Score: 134
Period size: 33 Copynumber: 3.0 Consensus size: 33
15898431 AGTTGAGATC
**
15898441 AAAATCAAAAGAAAAAATAAAAAAAGAAGAAAA
1 AAAATCAAAATCAAAAATAAAAAAAGAAGAAAA
15898474 AAAATCAAAATCAAAAAT-AAAAAAGAAG-AAA
1 AAAATCAAAATCAAAAATAAAAAAAGAAGAAAA
15898505 AAAATCAAAATC-AAAATCGAAAACAAAGAAGAAAA
1 AAAATCAAAATCAAAAAT--AAAA-AAAGAAGAAAA
15898540 A
1 A
15898541 GAAAAATCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
30 5 0.08
31 15 0.25
32 10 0.17
33 19 0.32
34 7 0.12
35 4 0.07
ACGTcount: A:0.77, C:0.07, G:0.08, T:0.08
Consensus pattern (33 bp):
AAAATCAAAATCAAAAATAAAAAAAGAAGAAAA
Found at i:15898547 original size:32 final size:33
Alignment explanation
Indices: 15898454--15898562 Score: 97
Period size: 31 Copynumber: 3.3 Consensus size: 33
15898444 ATCAAAAGAA
15898454 AAAAT-AAAAA-AAGAAGAAAAAAAATCAAAATC
1 AAAATAAAAAAGAAGAA-AAAAAAAATCAAAATC
15898486 AAAAATAAAAAAGAAG---AAAAAAATCAAAATC
1 -AAAATAAAAAAGAAGAAAAAAAAAATCAAAATC
15898517 AAAATCGAAAACAAAGAAGAAAAAGAAAAATC--AATC
1 AAAAT---AAA-AAAGAAGAAAAA-AAAAATCAAAATC
*
15898553 AAAATGAAAA
1 AAAATAAAAA
15898563 TTAAAATATG
Statistics
Matches: 65, Mismatches: 1, Indels: 21
0.75 0.01 0.24
Matches are distributed among these distances:
30 5 0.08
31 15 0.23
32 2 0.03
33 10 0.15
34 12 0.18
35 3 0.05
36 9 0.14
37 2 0.03
38 7 0.11
ACGTcount: A:0.75, C:0.07, G:0.08, T:0.09
Consensus pattern (33 bp):
AAAATAAAAAAGAAGAAAAAAAAAATCAAAATC
Found at i:15900844 original size:88 final size:88
Alignment explanation
Indices: 15900690--15901262 Score: 887
Period size: 88 Copynumber: 6.5 Consensus size: 88
15900680 CAGTGAATAC
* *
15900690 AGCAGATCTTGCCTTCCTGCATCGACAATGAAGCAGATCGAAGACACAAATCTTGCCTCCCTCGG
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
15900755 TTGTAGTGGAGCTGGTTGAAGAT
66 TTGTAGTGGAGCTGGTTGAAGAT
* * *
15900778 AGCAAATCTTGCCTTCCTACATCGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
*
15900843 TTGTGGTGGAGCTGGTTGAAGAT
66 TTGTAGTGGAGCTGGTTGAAGAT
* * *
15900866 AGCAAATCTTGCCTTCCTACATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTTCCTCGG
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
*
15900931 TTGTAGTGGAGCTAGTTGAAGAT
66 TTGTAGTGGAGCTGGTTGAAGAT
*
15900954 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTTCCTCCCTCGG
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
* * *
15901019 TTGTGGTGGAGCTAGTTGAAGAC
66 TTGTAGTGGAGCTGGTTGAAGAT
* * * * * *
15901042 AACAGATCTTGCCTTCCTACATCGACAGCGAAGCAGATCGAAGACACAAACCTTTCCTCCTTCGA
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
15901107 TTGTAGTGGAGCTGGTTGAAGAT
66 TTGTAGTGGAGCTGGTTGAAGAT
* * * *
15901130 AGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTTGA
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
*
15901195 TTGTAGTGGAG-TAGGTTGAAGAC
66 TTGTAGTGGAGCT-GGTTGAAGAT
* *
15901218 AGCAAATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCAAAGAC
1 AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGAC
15901263 GGCGAATCAT
Statistics
Matches: 450, Mismatches: 34, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
87 1 0.00
88 449 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
AGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAACCTTGCCTCCCTCGG
TTGTAGTGGAGCTGGTTGAAGAT
Found at i:15901427 original size:45 final size:43
Alignment explanation
Indices: 15901352--15901450 Score: 110
Period size: 44 Copynumber: 2.3 Consensus size: 43
15901342 GAAATTACAG
* **
15901352 ATCTTGTCTCCCTAAGCTGTAGCAGAGCAGA-TCGAAGATGACAA
1 ATCTTATCTCCCTAAGCTGTAGCAGAGCAGACT-G-AGAAAACAA
* **
15901396 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAGAAAACAA
1 ATCTTATCTCCCT-AAGCTGTAGCAGAGCAGACTGAGAAAACAA
15901440 ATCTTATCTCC
1 ATCTTATCTCC
15901451 TCGATGTTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 30 0.64
45 16 0.34
46 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (43 bp):
ATCTTATCTCCCTAAGCTGTAGCAGAGCAGACTGAGAAAACAA
Found at i:15901673 original size:12 final size:12
Alignment explanation
Indices: 15901656--15901690 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
15901646 GGCCCGCTAT
15901656 TAAAATAA-ATAA
1 TAAAATAACA-AA
15901668 TAAAATAACAAA
1 TAAAATAACAAA
15901680 TAAAATAACAA
1 TAAAATAACAA
15901691 TCCAAATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 21 0.95
13 1 0.05
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (12 bp):
TAAAATAACAAA
Found at i:15902748 original size:19 final size:19
Alignment explanation
Indices: 15902724--15902764 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15902714 TTATTAATAA
*
15902724 ATTTATTGTTACTATTATT
1 ATTTATTATTACTATTATT
**
15902743 ATTTATTATTGGTATTATT
1 ATTTATTATTACTATTATT
15902762 ATT
1 ATT
15902765 ACACTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
ATTTATTATTACTATTATT
Found at i:15905223 original size:34 final size:31
Alignment explanation
Indices: 15905170--15905239 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 31
15905160 CAATTGAATA
*
15905170 ACAGTTCAGTTCAGTTGGGCCTTTTCCCATT
1 ACAGTTCAGTTCAGTTGGGCCTTATCCCATT
*
15905201 ACAGTATCAGTATCAGTGTGGGCCTTATCTCATT
1 ACAGT-TCAGT-TCAGT-TGGGCCTTATCCCATT
15905235 ACAGT
1 ACAGT
15905240 GATAGTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 5 0.15
32 5 0.15
33 5 0.15
34 19 0.56
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (31 bp):
ACAGTTCAGTTCAGTTGGGCCTTATCCCATT
Found at i:15908356 original size:17 final size:17
Alignment explanation
Indices: 15908334--15908377 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
15908324 TGGTTGTGTT
15908334 TATATA-ATGTGCG-AA
1 TATATATATGTGCGTAA
*
15908349 TATATATATGTGTGTAA
1 TATATATATGTGCGTAA
15908366 TATATATATGTG
1 TATATATATGTG
15908378 GATCGAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 6 0.23
16 6 0.23
17 14 0.54
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.43
Consensus pattern (17 bp):
TATATATATGTGCGTAA
Found at i:15908653 original size:41 final size:41
Alignment explanation
Indices: 15908591--15908760 Score: 277
Period size: 41 Copynumber: 4.1 Consensus size: 41
15908581 GTTTGGAATT
* *
15908591 GGTGAATTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
15908632 GGTGATTTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15908673 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15908714 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
15908755 GGTGAT
1 GGTGAT
15908761 CCGAATATGA
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 120 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:15908696 original size:82 final size:82
Alignment explanation
Indices: 15908598--15908760 Score: 317
Period size: 82 Copynumber: 2.0 Consensus size: 82
15908588 ATTGGTGAAT
*
15908598 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
15908663 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
15908680 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
15908745 GCTAAGTGCCGGTGAT
66 GCTAAGTGCCGGTGAT
15908761 CCGAATATGA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:15908888 original size:36 final size:36
Alignment explanation
Indices: 15908841--15908912 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
15908831 GAATGTATGA
15908841 ACATTGTTTCAAGATGTTGATGAGTATATAATTGTT
1 ACATTGTTTCAAGATGTTGATGAGTATATAATTGTT
15908877 ACATTGTTTCAAGATGTTGATGAGTATATAATTGTT
1 ACATTGTTTCAAGATGTTGATGAGTATATAATTGTT
15908913 CGAATTTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (36 bp):
ACATTGTTTCAAGATGTTGATGAGTATATAATTGTT
Found at i:15909024 original size:31 final size:34
Alignment explanation
Indices: 15908983--15909100 Score: 113
Period size: 37 Copynumber: 3.5 Consensus size: 34
15908973 TTATGTGTGC
*
15908983 ATATTTATGCATTCGGCATAGGTGGATATA-TAT
1 ATATGTATGCATTCGGCATAGGTGGATATAGTAT
* *
15909016 -T-TGTATGCATTCGGCATAGATAGATATAAGTGTAT
1 ATATGTATGCATTCGGCATAGGTGGATAT-A--GTAT
*
15909051 ATATGTATGCATTCGGCATAGGTGGGTATAAGTGA-
1 ATATGTATGCATTCGGCATAGGTGGATAT-AGT-AT
15909086 ATATG--TGCATTCGGC
1 ATATGTATGCATTCGGC
15909101 CTTTATAGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
31 23 0.32
32 2 0.03
33 10 0.14
35 10 0.14
36 2 0.03
37 25 0.35
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (34 bp):
ATATGTATGCATTCGGCATAGGTGGATATAGTAT
Found at i:15909052 original size:37 final size:37
Alignment explanation
Indices: 15909011--15909100 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
15909001 TAGGTGGATA
*
15909011 TATATTTGTATGCATTCGGCATAGATAGATATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
* * *
15909048 TATATATGTATGCATTCGGCATAGGTGGGTATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
15909085 -A-ATATG--TGCATTCGGC
1 TATATATGTATGCATTCGGC
15909101 CTTTATAGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
33 10 0.20
35 5 0.10
36 1 0.02
37 33 0.67
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (37 bp):
TATATATGTATGCATTCGGCATAGATAGATATAAGTG
Found at i:15916271 original size:17 final size:18
Alignment explanation
Indices: 15916249--15916294 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
15916239 TGGTTGTTTT
15916249 TATATAATGTGCG-AATA
1 TATATAATGTGCGTAATA
*
15916266 TATATATATGTGTGTAATA
1 TATATA-ATGTGCGTAATA
15916285 TATAT-ATGTG
1 TATATAATGTG
15916295 GATCGAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 11 0.42
18 6 0.23
19 9 0.35
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.43
Consensus pattern (18 bp):
TATATAATGTGCGTAATA
Found at i:15916273 original size:19 final size:19
Alignment explanation
Indices: 15916249--15916291 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
15916239 TGGTTGTTTT
15916249 TATATA-ATGTGCG-AATA
1 TATATATATGTGCGTAATA
*
15916266 TATATATATGTGTGTAATA
1 TATATATATGTGCGTAATA
15916285 TATATAT
1 TATATAT
15916292 GTGGATCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 11 0.48
ACGTcount: A:0.40, C:0.02, G:0.14, T:0.44
Consensus pattern (19 bp):
TATATATATGTGCGTAATA
Found at i:15916570 original size:41 final size:41
Alignment explanation
Indices: 15916508--15916677 Score: 268
Period size: 41 Copynumber: 4.1 Consensus size: 41
15916498 GTTTGGAATT
* *
15916508 GGTGAATTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15916549 GGTGATTTGAACCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15916590 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15916631 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
15916672 GGTGAT
1 GGTGAT
15916678 CCGAAATTAT
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:15916647 original size:82 final size:82
Alignment explanation
Indices: 15916515--15916677 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
15916505 ATTGGTGAAT
*
15916515 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATTTGAACCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGCTATAAGCCTAGCAG
15916580 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
*
15916597 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGCTATAAGCCTAGCAG
15916662 GCTAAGTGCCGGTGAT
66 GCTAAGTGCCGGTGAT
15916678 CCGAAATTAT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:15916909 original size:31 final size:34
Alignment explanation
Indices: 15916873--15916982 Score: 106
Period size: 37 Copynumber: 3.3 Consensus size: 34
15916863 GCATATTTAG
15916873 GCATTCGGCATAGGTGGATATA-TAT-T-TGTAT
1 GCATTCGGCATAGGTGGATATAGTATATATGTAT
* *
15916904 GCATTCGGCATAGATAGATATAAGTGTATATATGTAT
1 GCATTCGGCATAGGTGGATAT-A--GTATATATGTAT
*
15916941 GCATTCGGCATAGGTGGGTATAAGTGA-ATATG--T
1 GCATTCGGCATAGGTGGATAT-AGT-ATATATGTAT
15916974 GCATTCGGC
1 GCATTCGGC
15916983 CTTTATAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
31 19 0.28
32 1 0.01
33 10 0.15
35 10 0.15
36 2 0.03
37 25 0.37
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.34
Consensus pattern (34 bp):
GCATTCGGCATAGGTGGATATAGTATATATGTAT
Found at i:15916934 original size:37 final size:37
Alignment explanation
Indices: 15916893--15916982 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
15916883 TAGGTGGATA
*
15916893 TATATTTGTATGCATTCGGCATAGATAGATATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
* * *
15916930 TATATATGTATGCATTCGGCATAGGTGGGTATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
15916967 -A-ATATG--TGCATTCGGC
1 TATATATGTATGCATTCGGC
15916983 CTTTATAGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
33 10 0.20
35 5 0.10
36 1 0.02
37 33 0.67
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (37 bp):
TATATATGTATGCATTCGGCATAGATAGATATAAGTG
Found at i:15922184 original size:26 final size:26
Alignment explanation
Indices: 15922148--15922200 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15922138 AAGAGATAGT
15922148 TCGCTCAAAACTATCTACTATTTGGA
1 TCGCTCAAAACTATCTACTATTTGGA
15922174 TCGCTCAAAACTATCTACTATTTGGA
1 TCGCTCAAAACTATCTACTATTTGGA
15922200 T
1 T
15922201 TATCTTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (26 bp):
TCGCTCAAAACTATCTACTATTTGGA
Found at i:15928085 original size:42 final size:42
Alignment explanation
Indices: 15928004--15928085 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
15927994 ATGCGTTGAG
* * * * *
15928004 TATTGAATACTTTTCCAATTAAATTTATTGATTAGGAATGAA
1 TATTAAATACTTTTCCAATCAAATTCATTGACTAAGAATGAA
*
15928046 TATTAAATGCTTTTCCAATCAAATTCAGTT-ACTAAGAATG
1 TATTAAATACTTTTCCAATCAAATTCA-TTGACTAAGAATG
15928086 GCAACTTACT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (42 bp):
TATTAAATACTTTTCCAATCAAATTCATTGACTAAGAATGAA
Found at i:15928843 original size:43 final size:43
Alignment explanation
Indices: 15928777--15928859 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
15928767 ACCTCTTTCA
* *
15928777 TTTTTTCTCTTATTATCATTCTAATTTGAAACTTAAATTTAAT
1 TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTTAAT
*
15928820 TTTTTTCTTTTATTACCACTCTAATTTGAAACTTAAATTT
1 TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTT
15928860 GATATATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.02, T:0.55
Consensus pattern (43 bp):
TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTTAAT
Found at i:15938742 original size:41 final size:40
Alignment explanation
Indices: 15938654--15938798 Score: 130
Period size: 41 Copynumber: 3.5 Consensus size: 40
15938644 TAAAAACAGA
* * * * ** *
15938654 TTCACCGGCATTTAGCCTGCTAGGCTTAAAGCCTGATTTAG
1 TTCACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATAT
*
15938695 TACACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATAT
1 TTCACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATAT
* *
15938736 TTCACCGGCATTAAGCCTGCTAGACATTTAGTCT-AAAGTGT
1 TTCACCGGCATT-AGCCTGCTAGACATATAGTCTGAAA-TAT
* *
15938777 TTCATCGGCAATAAGCCTGCTA
1 TTCACCGGC-ATTAGCCTGCTA
15938799 AGCGCTAAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 5 0.06
41 80 0.92
42 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (40 bp):
TTCACCGGCATTAGCCTGCTAGACATATAGTCTGAAATAT
Found at i:15939210 original size:10 final size:10
Alignment explanation
Indices: 15939197--15939222 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
15939187 CAAATTCAAG
15939197 TATATATACA
1 TATATATACA
15939207 TATATATACA
1 TATATATACA
15939217 TATATA
1 TATATA
15939223 ATTATTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATATACA
Found at i:15940400 original size:13 final size:13
Alignment explanation
Indices: 15940382--15940406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15940372 CAATCAAATG
15940382 CACACAAAATAAA
1 CACACAAAATAAA
15940395 CACACAAAATAA
1 CACACAAAATAA
15940407 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:15940664 original size:18 final size:19
Alignment explanation
Indices: 15940641--15940682 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
15940631 GGTTTTCTCA
15940641 AAATGGAAATGAAAATG-T
1 AAATGGAAATGAAAATGAT
*
15940659 AAATGGAAATGAAGATGAT
1 AAATGGAAATGAAAATGAT
15940678 AAATG
1 AAATG
15940683 ATTCATTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (19 bp):
AAATGGAAATGAAAATGAT
Found at i:15945801 original size:23 final size:22
Alignment explanation
Indices: 15945765--15945826 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 22
15945755 GCCTTGTATA
*
15945765 AAAATATGTA-ATAAATAAATTT
1 AAAATATTTATATAAATAAA-TT
*
15945787 AAAATGA-TTATAT-AATTAATT
1 AAAAT-ATTTATATAAATAAATT
15945808 AAAATATTTATATATAATA
1 AAAATATTTATATA-AATA
15945827 TGATACATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 1 0.03
21 13 0.41
22 12 0.38
23 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (22 bp):
AAAATATTTATATAAATAAATT
Found at i:15951198 original size:21 final size:21
Alignment explanation
Indices: 15951174--15951213 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15951164 CGTTTGATAT
15951174 GGAAAATGAAGAAA-AAGTGAA
1 GGAAAATG-AGAAACAAGTGAA
*
15951195 GGAAAGTGAGAAACAAGTG
1 GGAAAATGAGAAACAAGTG
15951214 GAGAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.33, T:0.10
Consensus pattern (21 bp):
GGAAAATGAGAAACAAGTGAA
Found at i:15951668 original size:11 final size:11
Alignment explanation
Indices: 15951652--15951677 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15951642 TTTTGTCTTA
15951652 CGCTGCAGTAT
1 CGCTGCAGTAT
15951663 CGCTGCAGTAT
1 CGCTGCAGTAT
15951674 CGCT
1 CGCT
15951678 ACAATATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (11 bp):
CGCTGCAGTAT
Found at i:15952174 original size:29 final size:30
Alignment explanation
Indices: 15952134--15952321 Score: 147
Period size: 30 Copynumber: 6.4 Consensus size: 30
15952124 CTATCTAATT
* *
15952134 ATGAAAAGGGATGGTGGCGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
* *
15952163 ATGAAAAGGGATAGTGACGACCACCGAAAA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
* ** * **
15952193 ATGAAAAGGGATAGCT-TTGACTATCGAATT
1 ATGAAAAGGGAT-GGTGACGACCATCGAAAA
* * * * *
15952223 GTGAAAAGGGA-GCT-TCGACTATC-AAATT
1 ATGAAAAGGGATGGTGACGACCATCGAAA-A
* *
15952251 ATGAAAAGGGACGGTGACAACCATC-AAAA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
15952280 ATGAAAAGGGATGGTGACGACCATC-AAATA
1 ATGAAAAGGGATGGTGACGACCATCGAAA-A
15952310 ATGAAAAGGGAT
1 ATGAAAAGGGAT
15952322 AGCTTTCGCT
Statistics
Matches: 130, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.17
29 50 0.38
30 55 0.42
31 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.27, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAAAA
Found at i:15952243 original size:28 final size:28
Alignment explanation
Indices: 15952193--15952261 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
15952183 CCACCGAAAA
* *
15952193 ATGAAAAGGGATAGCTTTGACTATCGAATT
1 ATGAAAAGGG--AGCTTCGACTATCAAATT
*
15952223 GTGAAAAGGGAGCTTCGACTATCAAATT
1 ATGAAAAGGGAGCTTCGACTATCAAATT
15952251 ATGAAAAGGGA
1 ATGAAAAGGGA
15952262 CGGTGACAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.74
30 9 0.26
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.25
Consensus pattern (28 bp):
ATGAAAAGGGAGCTTCGACTATCAAATT
Found at i:15952345 original size:117 final size:118
Alignment explanation
Indices: 15952104--15952349 Score: 336
Period size: 117 Copynumber: 2.1 Consensus size: 118
15952094 AGAAACAAGA
* * * * * *
15952104 ATGAAAAGGGATAGCCTCGGCTATCTAATTATGAAAAGGGATGGTGGCGACCATCAACAATGAAA
1 ATGAAAAGGGA-AGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAA
*
15952169 AGGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAATT
65 AGGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAACT
* *
15952223 GTGAAAAGGG-AGCTTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
1 ATGAAAAGGGAAGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
* * *
15952287 GGGATGGTGACGACCATC-AAATAATGAAAAGGGATAGCTTTCG-CTATCGAGCT
66 GGGATAGTGACGACCACCGAAA-AATGAAAAGGGATAGCTTT-GACTATCGAACT
15952340 ATGAAAAGGG
1 ATGAAAAGGG
15952350 TTGGGACAAC
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
116 3 0.03
117 99 0.88
118 1 0.01
119 9 0.08
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (118 bp):
ATGAAAAGGGAAGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
GGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAACT
Found at i:15952759 original size:17 final size:17
Alignment explanation
Indices: 15952737--15952771 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
15952727 CATGTATAGG
*
15952737 TGTTTTGGTTGATGTTA
1 TGTTTTGGCTGATGTTA
15952754 TGTTTTGGCTGATGTTA
1 TGTTTTGGCTGATGTTA
15952771 T
1 T
15952772 AGCCATTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.03, G:0.29, T:0.57
Consensus pattern (17 bp):
TGTTTTGGCTGATGTTA
Found at i:15954851 original size:20 final size:19
Alignment explanation
Indices: 15954823--15954892 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
15954813 TAGGCATTGA
*
15954823 AGTGTAATCAGGAGCACCGG
1 AGTGCAATCAGG-GCACCGG
*
15954843 AGTGCAATCAGGGGTACCGG
1 AGTGCAATCA-GGGCACCGG
*
15954863 AGTGCAGTCAAGGGCA-CGG
1 AGTGCAATC-AGGGCACCGG
15954882 AAGTGCAATCA
1 -AGTGCAATCA
15954893 TATACATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
19 4 0.10
20 35 0.83
21 3 0.07
ACGTcount: A:0.30, C:0.20, G:0.36, T:0.14
Consensus pattern (19 bp):
AGTGCAATCAGGGCACCGG
Found at i:15959104 original size:17 final size:17
Alignment explanation
Indices: 15959078--15959339 Score: 206
Period size: 17 Copynumber: 15.4 Consensus size: 17
15959068 ACCTATGACA
15959078 ATATGCGAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959095 ATATGTGAGCCGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959112 ATATACGAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959129 ATATGTGAGCTATGTTT
1 ATATGCGAGCTGTGTTT
* *
15959146 GTATGCG-GGTAGT-TTT
1 ATATGCGAGCT-GTGTTT
* *
15959162 ATTATTCGAGCTATGTTT
1 A-TATGCGAGCTGTGTTT
15959180 ATATGCG-GCTGGTGTTT
1 ATATGCGAGCT-GTGTTT
*
15959197 ATATGCAAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959214 ATATGCTAGCTATGTTT
1 ATATGCGAGCTGTGTTT
* * *
15959231 ATATGCCAGCAGTGTAT
1 ATATGCGAGCTGTGTTT
* *
15959248 ATATGCAAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959265 ATATGCTAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15959282 ATATGCAAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
**** * *
15959299 ATAAAATATCTATGTTT
1 ATATGCGAGCTGTGTTT
* *
15959316 ATATGTGAACTGTGTTT
1 ATATGCGAGCTGTGTTT
15959333 ATATGCG
1 ATATGCG
15959340 GGTTGTGTCT
Statistics
Matches: 192, Mismatches: 47, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
16 8 0.04
17 175 0.91
18 9 0.05
ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44
Consensus pattern (17 bp):
ATATGCGAGCTGTGTTT
Found at i:15962656 original size:33 final size:34
Alignment explanation
Indices: 15962613--15962678 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
15962603 CTAATTTCTG
*
15962613 AAAATCCTAACCCTAACCC-TAACAAAAT-TAAAA
1 AAAACCCTAACCCTAACCCTTAA-AAAATCTAAAA
*
15962646 AAAACCCTAACTCTAACCCTTAAAAAATCTAAA
1 AAAACCCTAACCCTAACCCTTAAAAAATCTAAA
15962679 GAGAGAGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 22 0.76
34 7 0.24
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (34 bp):
AAAACCCTAACCCTAACCCTTAAAAAATCTAAAA
Found at i:15963116 original size:27 final size:27
Alignment explanation
Indices: 15963076--15963147 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
15963066 ATATGTTTGG
15963076 TGGTGCCAATGTCATAAGTGGCACCAA
1 TGGTGCCAATGTCATAAGTGGCACCAA
* * * *
15963103 TTGTGCCCATGTCATAGGTGGCACCAG
1 TGGTGCCAATGTCATAAGTGGCACCAA
*
15963130 TGGTGCCTATGTCATAAG
1 TGGTGCCAATGTCATAAG
15963148 CAGTACTAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (27 bp):
TGGTGCCAATGTCATAAGTGGCACCAA
Found at i:15967000 original size:50 final size:48
Alignment explanation
Indices: 15966946--15967051 Score: 115
Period size: 50 Copynumber: 2.2 Consensus size: 48
15966936 ACCCCAAATG
* * * * *
15966946 TTTTTTTCCTTTCTCCTT-TCTTTCTCTTCTATATTTTCTACTATTCTCTT
1 TTTTTTTCCCTTCTCCTTCTC-TTATCTTCT-T-TGTTCTACTAGTATCTT
*
15966996 TTTTTCTCCCTTCTCCTTCTCTTATCTTCTTTGTTCTACTAGTATCTT
1 TTTTTTTCCCTTCTCCTTCTCTTATCTTCTTTGTTCTACTAGTATCTT
*
15967044 TTTCTTTC
1 TTTTTTTC
15967052 TTTTTTACCT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
48 20 0.43
49 1 0.02
50 24 0.51
51 2 0.04
ACGTcount: A:0.08, C:0.27, G:0.02, T:0.63
Consensus pattern (48 bp):
TTTTTTTCCCTTCTCCTTCTCTTATCTTCTTTGTTCTACTAGTATCTT
Found at i:15967034 original size:48 final size:49
Alignment explanation
Indices: 15966946--15967051 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 49
15966936 ACCCCAAATG
* * * * *
15966946 TTTTTTTCCTTTCTCCTTTCTTTCTCTTCTATATTTTCTACTATTCTCT
1 TTTTTTTCCCTTCTCCTTTCTTTATCTTCTATATGTTCTACTAGTATCT
15966995 TTTTTTCTCCCTTCTCC-TTCTCTTATCTTCT-T-TGTTCTACTAGTATCT
1 TTTTTT-TCCCTTCTCCTTTCT-TTATCTTCTATATGTTCTACTAGTATCT
15967043 TTTTCTTTC
1 TTTT-TTTC
15967052 TTTTTTACCT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
48 19 0.39
49 13 0.27
50 17 0.35
ACGTcount: A:0.08, C:0.27, G:0.02, T:0.63
Consensus pattern (49 bp):
TTTTTTTCCCTTCTCCTTTCTTTATCTTCTATATGTTCTACTAGTATCT
Found at i:15974480 original size:22 final size:23
Alignment explanation
Indices: 15974463--15974507 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15974453 AAATCAATTC
15974463 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTACAAAATCATATCT
*
15974486 TCTAAGATTAC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
15974508 ACGATTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:15974491 original size:23 final size:22
Alignment explanation
Indices: 15974450--15974507 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
15974440 GAAAGGTGTC
15974450 TACAAATCA-AT-TCTCTAAGAT
1 TACAAATCATATCT-TCTAAGAT
15974471 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
15974494 TACATATCATATCT
1 TACAAATCATATCT
15974508 ACGATTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 3 0.09
22 16 0.48
23 13 0.39
24 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15974501 original size:17 final size:17
Alignment explanation
Indices: 15974479--15974531 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
15974469 ATTACAAAAT
15974479 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
15974496 CATATCATATCTACGATTT
1 CATATC-T-TCTAAGATTA
* *
15974515 TATATCCTCTAAGATTA
1 CATATCTTCTAAGATTA
15974532 TGTTTCCAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 14 0.50
18 1 0.04
19 13 0.46
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.42
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:15982464 original size:6 final size:6
Alignment explanation
Indices: 15982455--15982481 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15982445 TCCATTTCCA
15982455 TTTTCG TTTTCG TTTTCG TTTTCG TTT
1 TTTTCG TTTTCG TTTTCG TTTTCG TTT
15982482 CTGTTTCTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.70
Consensus pattern (6 bp):
TTTTCG
Found at i:15986681 original size:6 final size:6
Alignment explanation
Indices: 15986670--15986706 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
15986660 AGCGGAAATG
15986670 GGATTA GGATTA GGATTA GGATTA GGATTA TGGATTA
1 GGATTA GGATTA GGATTA GGATTA GGATTA -GGATTA
15986707 AGGGTAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (6 bp):
GGATTA
Found at i:15989950 original size:14 final size:12
Alignment explanation
Indices: 15989928--15989969 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
15989918 TTCTCAACTC
15989928 ATAATTCTCATAA
1 ATAATTCTCA-AA
15989941 ATAATGTCTCAAA
1 ATAAT-TCTCAAA
*
15989954 ATAATTCAC-AA
1 ATAATTCTCAAA
15989965 ATAAT
1 ATAAT
15989970 CATGCATTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 7 0.26
12 3 0.11
13 12 0.44
14 5 0.19
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAATTCTCAAA
Found at i:15991728 original size:12 final size:11
Alignment explanation
Indices: 15991702--15991742 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 11
15991692 AACAAATCAG
15991702 TAAAGTAAA-AA
1 TAAA-TAAATAA
15991713 TAAATAATATAA
1 TAAATAA-ATAA
15991725 TAAAT-AATAA
1 TAAATAAATAA
15991735 TAAATAAA
1 TAAATAAA
15991743 ATAAAGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 12 0.44
11 8 0.30
12 7 0.26
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
TAAATAAATAA
Found at i:15991737 original size:22 final size:23
Alignment explanation
Indices: 15991702--15991746 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
15991692 AACAAATCAG
*
15991702 TAAAGTAAAAATAAATAATATAA
1 TAAAGTAAAAATAAATAAAATAA
*
15991725 TAAA-TAATAATAAATAAAATAA
1 TAAAGTAAAAATAAATAAAATAA
15991747 AGCAAAGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAGTAAAAATAAATAAAATAA
Found at i:15992054 original size:30 final size:30
Alignment explanation
Indices: 15992015--15992101 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
15992005 ACGGCCTCGG
*
15992015 ACACGCCCGTGTGTCCAGGCTGTGTGGCAC
1 ACACGCCCGTGTGTCCAGACTGTGTGGCAC
* *
15992045 ACACTCCCGTGTGTCTAGACTGTGTGGCAC
1 ACACGCCCGTGTGTCCAGACTGTGTGGCAC
*
15992075 ACACGGCCGTGTG-CCAGATCGTGTGTG
1 ACACGCCCGTGTGTCCAGA-C-TGTGTG
15992102 TTTTCCTTCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
29 4 0.08
30 39 0.80
31 6 0.12
ACGTcount: A:0.15, C:0.30, G:0.32, T:0.23
Consensus pattern (30 bp):
ACACGCCCGTGTGTCCAGACTGTGTGGCAC
Found at i:16002017 original size:26 final size:27
Alignment explanation
Indices: 16001962--16002019 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
16001952 AATTTTAAAA
* *
16001962 TATTTTTAAAATAATTTTTTTTATTTTT
1 TATTTTTAAAATAA-TTTTTTTAGTGTT
*
16001990 TATTTTTAAAATAA-TTTTTTGGTGTT
1 TATTTTTAAAATAATTTTTTTAGTGTT
16002016 TATT
1 TATT
16002020 AAAAAATGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 13 0.48
28 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (27 bp):
TATTTTTAAAATAATTTTTTTAGTGTT
Found at i:16002636 original size:15 final size:16
Alignment explanation
Indices: 16002616--16002657 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
16002606 CCCGGCCCGG
16002616 TCATAT-TAATTTTTT
1 TCATATATAATTTTTT
*
16002631 TCATATATTATTTTTT
1 TCATATATAATTTTTT
* *
16002647 TAAAATATAAT
1 TCATATATAAT
16002658 ACATCAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
TCATATATAATTTTTT
Found at i:16003532 original size:110 final size:110
Alignment explanation
Indices: 16003339--16003562 Score: 448
Period size: 110 Copynumber: 2.0 Consensus size: 110
16003329 TTTCTATGAA
16003339 AATAGACTCAATAAGATTTAATTCTATATCTCATCCACCTCTAATTCATTTTCTACTATCCTTAA
1 AATAGACTCAATAAGATTTAATTCTATATCTCATCCACCTCTAATTCATTTTCTACTATCCTTAA
16003404 TGATTTTTCAAAATCACGTCACTACTGCTGTCTCAAAACTGATTC
66 TGATTTTTCAAAATCACGTCACTACTGCTGTCTCAAAACTGATTC
16003449 AATAGACTCAATAAGATTTAATTCTATATCTCATCCACCTCTAATTCATTTTCTACTATCCTTAA
1 AATAGACTCAATAAGATTTAATTCTATATCTCATCCACCTCTAATTCATTTTCTACTATCCTTAA
16003514 TGATTTTTCAAAATCACGTCACTACTGCTGTCTCAAAACTGATTC
66 TGATTTTTCAAAATCACGTCACTACTGCTGTCTCAAAACTGATTC
16003559 AATA
1 AATA
16003563 CCAATTTTTT
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 114 1.00
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (110 bp):
AATAGACTCAATAAGATTTAATTCTATATCTCATCCACCTCTAATTCATTTTCTACTATCCTTAA
TGATTTTTCAAAATCACGTCACTACTGCTGTCTCAAAACTGATTC
Found at i:16007295 original size:50 final size:51
Alignment explanation
Indices: 16007234--16008006 Score: 314
Period size: 50 Copynumber: 15.6 Consensus size: 51
16007224 CGTAACTTTT
* * *
16007234 GGAAAGTAAGATTCACCATCGTGGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
** * * * *
16007284 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCACTGCCTG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * * * *
16007335 AGAATGTAAGATTCGCTGTTGTGGCTTTAGTCTTTTTAACCGCAAAGTCAG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * ** * **
16007386 GG-AGGCCAGATTCACCGTTGTGGCTTTAATCTGTTCCACTG-AACCG-CTT
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAA-TGTCAG
* * * * *
16007435 GGAAGGTAAGATTCATCGTTGTGACTTTAATCCTTTT-A--GC--TG-C--
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * *
16007478 ---AA-CATGATTCACCGTTGTGGCTTTAATCTCTCT-ACTGCACTGGCTG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * ** ** * * **
16007524 AGAGAGTGAGATTCGTCATTGTGACTTTAATCCCTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * ** *
16007574 GGAAAGCAAGATTCACCGTTGTGGCTCTAGTCTGCTTCACT---ATGTTACCAG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATG-T--CAG
* * * * *
16007625 GG-AAGTAACACTCACCGCTGTGGCTTTAGTCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * *** ** *
16007674 GGGAAGTAAGATTCACCGTCGTGACTTTAATCTGTTCCGCTGC-ATCACCTG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAAT-GTCAG
* * * * * * * *
16007725 GG-AAGTAAGAATCGCTGTTTTAGCTTTAATATTTTTAACTGCAATGTCAT
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * *** * * * *
16007775 GG-AGGCAATATTCACCGTTGTGGCTTTAATATGTTCCGCTTCACTGCCTG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * * *
16007825 AG-AGGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * ** *
16007874 GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCT-GCTGC-ATCACTTG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCT-TTTTAACTGCAATGTC-AG
* * * * *
16007925 GG-GAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAG
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
*
16007975 GG-AAGCAAGATTCACCGATGTGGCTTTAATCT
1 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCT
16008007 GTTCCACTAC
Statistics
Matches: 517, Mismatches: 173, Indels: 66
0.68 0.23 0.09
Matches are distributed among these distances:
39 25 0.05
40 1 0.00
41 2 0.00
43 2 0.00
44 1 0.00
45 2 0.00
47 4 0.01
48 1 0.00
49 20 0.04
50 390 0.75
51 65 0.13
52 1 0.00
53 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (51 bp):
GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCAG
Found at i:16007546 original size:89 final size:89
Alignment explanation
Indices: 16007394--16007568 Score: 221
Period size: 89 Copynumber: 2.0 Consensus size: 89
16007384 AGGGAGGCCA
* *
16007394 GATTCACCGTTGTGGCTTTAATCTGTTCCACTGAACCGCTTGGAAGGTAAGATTCATCGTTGTGA
1 GATTCACCGTTGTGGCTTTAATCTGCTCCACTGAACCGCTTGGAAGGTAAGATTCATCATTGTGA
* *
16007459 CTTTAATCCTTTTAGCTGCAACAT
66 CTTTAATCCCTTTAACTGCAACAT
* * * * *
16007483 GATTCACCGTTGTGGCTTTAATCT-CTCTACTGCACTGGC-T-GAGAGAGTGAGATTCGTCATTG
1 GATTCACCGTTGTGGCTTTAATCTGCTCCACTGAAC-CGCTTGGA-AG-GTAAGATTCATCATTG
16007545 TGACTTTAATCCCTTTAACTGCAA
63 TGACTTTAATCCCTTTAACTGCAA
16007569 TGTCGGGAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
87 2 0.03
88 11 0.15
89 61 0.82
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (89 bp):
GATTCACCGTTGTGGCTTTAATCTGCTCCACTGAACCGCTTGGAAGGTAAGATTCATCATTGTGA
CTTTAATCCCTTTAACTGCAACAT
Found at i:16007860 original size:200 final size:200
Alignment explanation
Indices: 16007641--16008011 Score: 589
Period size: 200 Copynumber: 1.9 Consensus size: 200
16007631 AACACTCACC
* * *
16007641 GCTGTGGCTTTAGTCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGTCGTGACTTTAATC
1 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
* *
16007706 TGTTCCGCTGCATCACCTGGGAAGTAAGAATCGCTGTTTTAGCTTTAATATTTTTAACTGCAATG
66 TATTCCGCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
* * * *
16007771 TCATGGAGGCAATATTCACCGTTGTGGCTTTAATATGTTCCGCTTCACTGCCTGAGAGGTAAGAT
131 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCGCTTCACTGCCTGAGAGGTAAGAT
16007836 TCGCT
196 TCGCT
* *
16007841 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATC
1 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
* * * * *
16007906 TATTCTGCTGCATCACTTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG
66 TATTCCGCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
*
16007971 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
131 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCC
16008012 ACTACATCGC
Statistics
Matches: 154, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
200 154 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (200 bp):
GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
TATTCCGCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCGCTTCACTGCCTGAGAGGTAAGAT
TCGCT
Found at i:16008034 original size:100 final size:101
Alignment explanation
Indices: 16007483--16008035 Score: 529
Period size: 100 Copynumber: 5.5 Consensus size: 101
16007473 GCTGCAACAT
* ** ** * * *
16007483 GATTCACCGTTGTGGCTTTAATCT-CTCTACTGCA-CTGGCTGAGAGAGTGAGATTCG-TCATTG
1 GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATC-ACCTGGGAGAGTAAGATTCGCT-GTTG
**
16007545 T-GACTTTAATCCCTTTAACTGCAATGTC-GGGAAAGCAA
64 TAG-CTTTAATCTTTTTAACTGCAATGTCAGGG-AAGCAA
* * ** * * * * * * *
16007583 GATTCACCGTTGTGGCTCTAGTCTGCTTCACTATG--TTACCAGGGA-AGTAACACTCACCGCTG
1 GATTCACCGTTGTGGCTTTAATCTG-TTC-CGCTGCATCACCTGGGAGAGTAAGATTCGCTGTTG
* * * *
16007645 TGGCTTTAGTCTTTTTAACTGCAATGTCGGGGAAGTAA
64 TAGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
* * * *
16007683 GATTCACCGTCGTGACTTTAATCTGTTCCGCTGCATCACCTGGGA-AGTAAGAATCGCTGTTTTA
1 GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATCACCTGGGAGAGTAAGATTCGCTGTTGTA
* * *
16007747 GCTTTAATATTTTTAACTGCAATGTCATGGAGGCAA
66 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
* * * * * *
16007783 TATTCACCGTTGTGGCTTTAATATGTTCCGCTTCA-CTGCCTGAGAG-GTAAGATTCGCTGCTGT
1 GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATC-ACCTGGGAGAGTAAGATTCGCTGTTGT
*
16007846 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAA
65 AGCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
* * *
16007883 GATTCACCGTTGTGGCTTTAATCTATTCTGCTGCATCACTTGGG-GAGTAAGATTCGCTGTTGTA
1 GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATCACCTGGGAGAGTAAGATTCGCTGTTGTA
16007947 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
66 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
* * * * *
16007983 GATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGA-TAAGAT
1 GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATCACCTGGGAGAGTAAGAT
16008036 CTGTAATTCT
Statistics
Matches: 366, Mismatches: 73, Indels: 28
0.78 0.16 0.06
Matches are distributed among these distances:
98 3 0.01
99 5 0.01
100 343 0.94
101 11 0.03
102 2 0.01
103 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (101 bp):
GATTCACCGTTGTGGCTTTAATCTGTTCCGCTGCATCACCTGGGAGAGTAAGATTCGCTGTTGTA
GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAA
Found at i:16008216 original size:170 final size:171
Alignment explanation
Indices: 16008026--16008393 Score: 504
Period size: 170 Copynumber: 2.1 Consensus size: 171
16008016 CATCGCTTGG
* * ** *
16008026 GAGATAAGATCTGTAATTCTTCGGTCTATTTCACCGTGATCTCAGGGAGATAAGACCTGATGTGA
1 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAAGAGATAAGACCTGATGCGA
* * *
16008091 TCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTAATCTGTTACACTGTAATCTCAGGGAA
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTTAATCCGCTACACTGTAATCTCAAGGAA
* * * *
16008155 ATAGGATTACTGGCTTCATTCTGCTCCGCTGTAATCTCAGA
131 ATAAGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGA
*
16008196 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAAAGAGATAAGACCTGATGCGA
1 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAAGAGATAAGACCTGATGCGA
* *
16008261 TCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAA
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATC---T-CTTTAATCCGCTACACTGTAATCTCAA
* * *
16008326 GGAGATAAGATTACTAGCTTCAATCTACTCCGCTGTAATCTTAGG
127 GGAAATAAGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGA
*
16008371 GAGATAAGGTTTCTGTAATTCTT
1 GAGATAA-G-ATCTGTAATTCTT
16008394 TAATCTGATG
Statistics
Matches: 172, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
170 92 0.53
175 67 0.39
176 1 0.01
177 12 0.07
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (171 bp):
GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAAGAGATAAGACCTGATGCGA
TCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTTAATCCGCTACACTGTAATCTCAAGGAA
ATAAGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGA
Found at i:16008478 original size:44 final size:44
Alignment explanation
Indices: 16008415--16008623 Score: 111
Period size: 44 Copynumber: 4.5 Consensus size: 44
16008405 GATCTACTCT
*
16008415 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
* * * * * *
16008459 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGA-T-C---CTTTATTTTAATCCG--CT-C-C
* **
16008512 TACTATAA-CTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
* * * * * * *
16008557 ACTATAATCTTAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTTAATCCGCTCC
16008601 ACTGTAATCTCAGGGAGATAAGA
1 ACTGTAATCTCAGGGAGATAAGA
16008624 CCTGTGGCTT
Statistics
Matches: 123, Mismatches: 27, Indels: 30
0.68 0.15 0.17
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 68 0.55
45 4 0.03
46 2 0.02
47 2 0.02
49 20 0.16
51 2 0.02
52 2 0.02
53 3 0.02
54 17 0.14
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
Found at i:16008523 original size:98 final size:98
Alignment explanation
Indices: 16008395--16008596 Score: 368
Period size: 98 Copynumber: 2.1 Consensus size: 98
16008385 GTAATTCTTT
* *
16008395 AATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
*
16008460 CTGTAATCTCAGGGAGATAGGATTACTAGCTTC
66 CTATAATCTCAGGGAGATAGGATTACTAGCTTC
16008493 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
*
16008558 CTATAATCTTAGGGAGATAGGATTACTAGCTTC
66 CTATAATCTCAGGGAGATAGGATTACTAGCTTC
16008591 AATCTG
1 AATCTG
16008597 CTCCACTGTA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 100 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (98 bp):
AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
CTATAATCTCAGGGAGATAGGATTACTAGCTTC
Found at i:16008841 original size:131 final size:131
Alignment explanation
Indices: 16008655--16009019 Score: 561
Period size: 131 Copynumber: 2.8 Consensus size: 131
16008645 CTTACACTTA
*
16008655 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT-AGGGAGACAAGATCTGTAATTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG-TTCAGGGAAACAAGATCTGTAATTTC
* *
16008719 CAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGTTTAAATCTGTTTCCCTACTCCTGG
65 CAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGG
16008784 GG
130 GG
* ** * *
16008786 AAGATAAGATTCGCCGTCTTCGATCTACTCTGCTGCTGTTCAGGGAAACAAGATCTGTAATTTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTCAGGGAAACAAGATCTGTAATTTCC
*
16008851 AACCTATTCCACTACTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
66 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
16008916 G
131 G
* * * *
16008917 AAGAGAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTCAGGAAAACAAGATCTGTAATTTCT
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTCAGGGAAACAAGATCTGTAATTTCC
** * *
16008982 AACCTATTCCACTGCTGACCAGGGGCATAGGACTTGTG
66 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTG
16009020 ATTTCACCGA
Statistics
Matches: 210, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
130 2 0.01
131 208 0.99
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (131 bp):
AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTCAGGGAAACAAGATCTGTAATTTCC
AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
G
Found at i:16010246 original size:13 final size:13
Alignment explanation
Indices: 16010228--16010278 Score: 75
Period size: 13 Copynumber: 3.8 Consensus size: 13
16010218 AGCCTCTCCG
*
16010228 TTTTCAGTTTTCA
1 TTTTCATTTTTCA
16010241 TTTTCATTTTTCA
1 TTTTCATTTTTCA
*
16010254 TTCTCATTTTTCA
1 TTTTCATTTTTCA
16010267 TTTTTCATTTTT
1 -TTTTCATTTTT
16010279 TTGACTCCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
13 24 0.71
14 10 0.29
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.69
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:16010251 original size:20 final size:20
Alignment explanation
Indices: 16010228--16010277 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
16010218 AGCCTCTCCG
16010228 TTTTCAGTTTTCA-TTTTCAT
1 TTTTCA-TTTTCATTTTTCAT
*
16010248 TTTTCATTCTCATTTTTCAT
1 TTTTCATTTTCATTTTTCAT
16010268 TTTTCATTTT
1 TTTTCATTTT
16010278 TTTGACTCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTCATTTTCATTTTTCAT
Found at i:16010278 original size:7 final size:7
Alignment explanation
Indices: 16010228--16010278 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
16010218 AGCCTCTCCG
*
16010228 TTTTCAG
1 TTTTCAT
16010235 TTTTCA-
1 TTTTCAT
16010241 TTTTCAT
1 TTTTCAT
16010248 TTTTCA-
1 TTTTCAT
*
16010254 TTCTCAT
1 TTTTCAT
16010261 TTTTCAT
1 TTTTCAT
16010268 TTTTCAT
1 TTTTCAT
16010275 TTTT
1 TTTT
16010279 TTGACTCCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 11 0.28
7 29 0.73
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.69
Consensus pattern (7 bp):
TTTTCAT
Found at i:16011150 original size:15 final size:15
Alignment explanation
Indices: 16011118--16011160 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
16011108 CCTCTCCTGT
* *
16011118 TTTTTTCTTTTTTTTC
1 TTTTTTC-TTTCTCTC
16011134 TTTTTTCTTTCTCTC
1 TTTTTTCTTTCTCTC
*
16011149 TTTTTTATTTCT
1 TTTTTTCTTTCT
16011161 ATTTTGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTCTTTCTCTC
Found at i:16017588 original size:50 final size:50
Alignment explanation
Indices: 16017523--16017763 Score: 232
Period size: 50 Copynumber: 4.7 Consensus size: 50
16017513 TCTTGAACTA
* * **
16017523 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTG
* * * *
16017573 CCCATGCCATGTCCCAGACATGGTCTTCCGA-GGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATATAGGTG
* * * * *
16017623 CCAACGCCATGTCCCAGACATGCTCTTACATGGGATCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTG
* * * * * *
16017673 CCAACGTCATGTACCAGAGATGGTCTTAAATGGGACCTCTCATAATCTCAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GGTG
*
16017729 CCAATGCCATGTCCCAAACATGGTCTTACATGGGA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
16017764 TCTCATCCTC
Statistics
Matches: 155, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 120 0.77
51 1 0.01
53 1 0.01
56 32 0.21
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGGTG
Found at i:16017708 original size:100 final size:102
Alignment explanation
Indices: 16017523--16017767 Score: 273
Period size: 100 Copynumber: 2.4 Consensus size: 102
16017513 TCTTGAACTA
* * * * *
16017523 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGT-TCTCATATAGGTGCCCATGCCATGTCC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TCTCTCATATAGGTGCCAACGCCATGTAC
** *
16017587 CAGACATGGTCTTCCGAGGGACCTCTC-ATCTC-GGTG
65 CAGACATGGTCTTCAAAGGGACCTCTCAATCTCAGATG
* * * * *
16017623 CCAACGCCATGTCCCAGACATGCTCTTACATGGGATCTCTCATCTCGGTGCCAACGTCATGTACC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATATAGGTGCCAACGCCATGTACC
*
16017688 AGAGATGGTCTT-AAATGGGACCTCTCATAATCTCAATGATG
66 AGACATGGTCTTCAAA-GGGACCTCTC--AATCTC-A-GATG
*
16017729 CCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTC
16017768 ATCCTCTTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
99 2 0.02
100 74 0.62
103 5 0.04
106 39 0.32
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (102 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATATAGGTGCCAACGCCATGTACC
AGACATGGTCTTCAAAGGGACCTCTCAATCTCAGATG
Found at i:16019028 original size:19 final size:17
Alignment explanation
Indices: 16018994--16019028 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
16018984 CTAAAATAGT
16018994 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
16019011 AACAACAATTATACAATA
1 AACAA-AATTA-ACAATA
16019029 TATAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.20
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:16019062 original size:22 final size:22
Alignment explanation
Indices: 16019037--16019079 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
16019027 TATATAAACA
16019037 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* * *
16019059 ATAATAGTGAAATTGTAGCAA
1 ATAATAATAAAATAGTAGCAA
16019080 AATAGTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Done.