Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 58 of 185
Found at i:16665741 original size:23 final size:23
Alignment explanation
Indices: 16665681--16665764 Score: 102
Period size: 23 Copynumber: 3.8 Consensus size: 23
16665671 CCTGATCAGT
16665681 ATACGACACAT-AAGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
****
16665703 AT--GACACACGGGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
*
16665724 ATACGACACATAAAGTGCCTGAT
1 ATACGACACATAAAGTGCCTGAA
16665747 ATACGACACATAAAGTGC
1 ATACGACACATAAAGTGC
16665765 ATGATTGGCA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.12
21 11 0.22
22 2 0.04
23 32 0.63
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:16666765 original size:9 final size:9
Alignment explanation
Indices: 16666753--16666791 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
16666743 TTTCATTTTT
16666753 ATTTCTTTA
1 ATTTCTTTA
16666762 ATTTCTTTA
1 ATTTCTTTA
16666771 ATTTACTTT-
1 ATTT-CTTTA
*
16666780 ATTTTTTTA
1 ATTTCTTTA
16666789 ATT
1 ATT
16666792 ATAATAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
8 3 0.11
9 20 0.74
10 4 0.15
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (9 bp):
ATTTCTTTA
Found at i:16671233 original size:62 final size:57
Alignment explanation
Indices: 16671145--16671269 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 57
16671135 TCCAAAAATA
* * * *
16671145 ATATTATTTTAATAGTTTAGTATTAAATTTAATTTACTGTTTATCTTATAGATAAATATT
1 ATATTATTTTAATAGTTTAATATTAAATTTAATATAATATTTATC-T-T-GATAAATATT
*
16671205 CTATTATTTTAATAAGATTTAATATTAAATTTAATATAATATTTATCTTGATAAATATT
1 ATATTATTTTAAT-AG-TTTAATATTAAATTTAATATAATATTTATCTTGATAAATATT
16671264 ATATTA
1 ATATTA
16671270 ATTAAATATT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
59 15 0.26
60 13 0.23
61 3 0.05
62 26 0.46
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (57 bp):
ATATTATTTTAATAGTTTAATATTAAATTTAATATAATATTTATCTTGATAAATATT
Found at i:16677243 original size:29 final size:29
Alignment explanation
Indices: 16677197--16677261 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
16677187 CGAGACTATA
16677197 TTGCTCACACAAGCTGACAGTGATCAGGG
1 TTGCTCACACAAGCTGACAGTGATCAGGG
*
16677226 TTGCTCACACAAGTTGACAGTGATCAGGG
1 TTGCTCACACAAGCTGACAGTGATCAGGG
16677255 TTGCTCA
1 TTGCTCA
16677262 GGCTAAACCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (29 bp):
TTGCTCACACAAGCTGACAGTGATCAGGG
Found at i:16682310 original size:4 final size:4
Alignment explanation
Indices: 16682301--16682367 Score: 116
Period size: 4 Copynumber: 16.8 Consensus size: 4
16682291 TGCATTAGAC
16682301 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
* *
16682349 ATAG ATGG ATGG ATAG ATA
1 ATAG ATAG ATAG ATAG ATA
16682368 CCTCAAGGAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 61 1.00
ACGTcount: A:0.48, C:0.00, G:0.27, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:16684822 original size:50 final size:50
Alignment explanation
Indices: 16684768--16684866 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
16684758 CAAATTGGAT
*
16684768 ATTAACCTTTGAATTAATG-TCTCACCTCACTTTTTCATTAAGGTTGTTAC
1 ATTAACCCTTGAATTAATGTTCT-ACCTCACTTTTTCATTAAGGTTGTTAC
*
16684818 ATTAACCCTTGAATTAATGTTCTACCTCACTTTTTCGTTAAGGTTGTTA
1 ATTAACCCTTGAATTAATGTTCTACCTCACTTTTTCATTAAGGTTGTTA
16684867 GGACAATTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 43 0.93
51 3 0.07
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.44
Consensus pattern (50 bp):
ATTAACCCTTGAATTAATGTTCTACCTCACTTTTTCATTAAGGTTGTTAC
Found at i:16685908 original size:5 final size:5
Alignment explanation
Indices: 16685900--16685930 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
16685890 TAAATAAGTA
*
16685900 ATTAT ATTAT ATTAT ATTAT ACTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A
16685931 AACAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:16686008 original size:16 final size:17
Alignment explanation
Indices: 16685977--16686012 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
16685967 ACGAAAACAG
16685977 AGAAACAAAAACGAAAA
1 AGAAACAAAAACGAAAA
*
16685994 AGAAAGAAAAA-GAAAA
1 AGAAACAAAAACGAAAA
16686010 AGA
1 AGA
16686013 GAAAGAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00
Consensus pattern (17 bp):
AGAAACAAAAACGAAAA
Found at i:16686940 original size:25 final size:25
Alignment explanation
Indices: 16686889--16686946 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
16686879 ACTTTAGCGC
* ***
16686889 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTACTAGCACGACAGT
*
16686914 GCTCTCTGATTACTAGTACGACAGT
1 GCTCTCTGATTACTAGCACGACAGT
16686939 GCTCTCTG
1 GCTCTCTG
16686947 TTTAGCACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
GCTCTCTGATTACTAGCACGACAGT
Found at i:16695037 original size:42 final size:42
Alignment explanation
Indices: 16694990--16695074 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
16694980 TTCTTGACTA
*
16694990 ATATAAAAAACATAGTGAAACATCACATCTAATTTATAACTC
1 ATATAAAAAACATAATGAAACATCACATCTAATTTATAACTC
* * *
16695032 ATATAACAAACATAATGAAACATCACGTCTAATTTATGACTC
1 ATATAAAAAACATAATGAAACATCACATCTAATTTATAACTC
16695074 A
1 A
16695075 AACATAATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (42 bp):
ATATAAAAAACATAATGAAACATCACATCTAATTTATAACTC
Found at i:16697590 original size:35 final size:35
Alignment explanation
Indices: 16697544--16697614 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
16697534 AATTTTCATC
16697544 GACAACTAATTTTTGTTTTTTTCAAAAATGAAAAT
1 GACAACTAATTTTTGTTTTTTTCAAAAATGAAAAT
16697579 GACAACTAATTTTTGTTTTTTTCAAAAATGAAAAT
1 GACAACTAATTTTTGTTTTTTTCAAAAATGAAAAT
16697614 G
1 G
16697615 GTTTCGACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.42
Consensus pattern (35 bp):
GACAACTAATTTTTGTTTTTTTCAAAAATGAAAAT
Found at i:16699253 original size:88 final size:88
Alignment explanation
Indices: 16699104--16699279 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
16699094 CACCACTAAA
16699104 GGAGATAGTAGCTACGCCGAGGAGAGACGACATTTCGGAGGAGAAGTGGATGGCAATTCTTCAAA
1 GGAGATAGTAGCTACGCCGAGGAGAGACGACATTTCGGAGGAGAAGTGGATGGCAATTCTTCAAA
16699169 ATCTTCAGGAGGAGGACGTTAAG
66 ATCTTCAGGAGGAGGACGTTAAG
16699192 GGAGATAGTAGCTACGCCGAGGAGAGACGACATTTCGGAGGAGAAGTGGATGGCAATTCTTCAAA
1 GGAGATAGTAGCTACGCCGAGGAGAGACGACATTTCGGAGGAGAAGTGGATGGCAATTCTTCAAA
16699257 ATCTTCAGGAGGAGGACGTTAAG
66 ATCTTCAGGAGGAGGACGTTAAG
16699280 TGGAAAGCTT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.19
Consensus pattern (88 bp):
GGAGATAGTAGCTACGCCGAGGAGAGACGACATTTCGGAGGAGAAGTGGATGGCAATTCTTCAAA
ATCTTCAGGAGGAGGACGTTAAG
Found at i:16707454 original size:26 final size:25
Alignment explanation
Indices: 16707411--16707459 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
16707401 CAGAATTTTT
16707411 TTGTTCTTGTAATGCTTTATTCTTCA
1 TTGTTCTTGTAATGCTTT-TTCTTCA
*
16707437 TTGTTCTTG-AATATCTTTTTCTT
1 TTGTTCTTGTAAT-GCTTTTTCTT
16707460 TTCAAGACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.14, C:0.14, G:0.10, T:0.61
Consensus pattern (25 bp):
TTGTTCTTGTAATGCTTTTTCTTCA
Found at i:16707859 original size:37 final size:38
Alignment explanation
Indices: 16707818--16707940 Score: 104
Period size: 45 Copynumber: 3.1 Consensus size: 38
16707808 TGAAAATAGC
* * *
16707818 AGATCATGTCTTCCTATATTGGTAG-GAAGTGGATCAA
1 AGATCATGTCTTCCCATACTGGTAGCGAAGTAGATCAA
* *
16707855 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 AGATCATGTCTTCCCATACTGGTAGCGAAGTAGATC-----AA
* * *
16707898 GTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
1 --AGATCATGTCTTCCCATACTGGTAGCGAAGTAGATCAA
16707938 AGA
1 AGA
16707941 AAGTAGATCT
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
37 21 0.29
38 12 0.17
40 1 0.01
43 2 0.03
45 36 0.50
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (38 bp):
AGATCATGTCTTCCCATACTGGTAGCGAAGTAGATCAA
Found at i:16707993 original size:44 final size:44
Alignment explanation
Indices: 16707881--16708834 Score: 787
Period size: 44 Copynumber: 21.5 Consensus size: 44
16707871 TACTGGTGGC
* * *** * * *
16707881 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * * *
16707926 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATCGGCAT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * *
16707970 GAAGTAGATCAAAGGTAGCAGATCTTATCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
*** * * *
16708014 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
*
16708059 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * *
16708103 GAAGTAGATCAAAGATAGTAGATCTTGTCTTCATGTATTGGTGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * * * * *
16708147 GAAGTAGATCGAAGATAACAGATATTGTCTTC-TCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCAT-GTATTGG-CGT
* * * * *
16708192 GAAGTTAGATCGAAGATAGCAGATCCTGTCTTCCTATGTTGGTAG-
1 GAAG-TAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* *** * *
16708237 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * *
16708281 GAAGTAGATCGAAGAAAGTAAATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * * *
16708325 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * *
16708369 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATACTAGTGGC--
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTT--CAT-GTATTGGCGT
* * *
16708413 AAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * * * * *
16708457 GAAGTAGATCGAAGATAGGAGAACCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * *** * *
16708501 GAAGTGGATCGAAGAT-GCAGATCTTGTCTCCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * * **
16708545 GAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTATCGGTAT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* * * *
16708589 GAAGTAGATCAAAGGTAGCAGATCTTGTCTTCACGTATTGGTGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* *
16708633 GAAGTAGATCGAAGAT-GACAGATCTTGTCTTCATATATTAGCGT
1 GAAGTAGATCGAAGATAG-CAGATCTTGTCTTCATGTATTGGCGT
* * *** * * *
16708677 GAAATAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG-CGT
* * ** *
16708722 GAAATAGATCGAAGAAAATAGATCTTGTCTTCATGTATTGGCAT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
* ** * *
16708766 GAAGTAGATC-AAGGATAACAGATCTTACCTTCCTGTACTGGCAGT
1 GAAGTAGATCGAA-GATAGCAGATCTTGTCTTCATGTATTGGC-GT
* *
16708811 GAAGTAGATCAAAAATAGCAGATC
1 GAAGTAGATCGAAGATAGCAGATC
16708835 ATATCCAGTC
Statistics
Matches: 734, Mismatches: 152, Indels: 46
0.79 0.16 0.05
Matches are distributed among these distances:
42 6 0.01
43 63 0.09
44 433 0.59
45 192 0.26
46 39 0.05
47 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (44 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
Found at i:16708366 original size:132 final size:133
Alignment explanation
Indices: 16707813--16708736 Score: 921
Period size: 132 Copynumber: 7.0 Consensus size: 133
16707803 TAGGTTGAAA
*
16707813 ATAGCAGATCATGTCTTCCTATATTGGTAGGAAGTGGATC--A-A---AGATCTTGTCTTCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* **
16707872 ACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG
66 ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGATCG
16707937 AAG
131 AAG
* * * * * * * * * * * * ***
16707940 AAAGTAGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAGGTAGCAGATCTTATCTTCATG
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCA
* * * * **
16708005 TATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
65 TACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGATC
16708069 GAAG
130 GAAG
* * * * * * * * **
16708073 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCC
* * * *
16708137 GTATTGGT-GTGAAGTAGATCGAAGATAA-CAGATATTGTCTTC-TCATACTGGTGGCGAAGTTA
64 ATACTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCAT-ATACTGGTGGCGAAG-TA
16708199 GATCGAAG
126 GATCGAAG
*
16708207 ATAGCAGATCCTGTCTTCCTATGTTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * * * * *
16708272 ACTGGTGGTGAAGTAGATCGAAGAAAGTAAATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
66 ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGATCG
16708336 AAG
131 AAG
16708339 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * * * * *
16708404 ACTAGTGGCAAAATAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
66 ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGATCG
16708468 AAG
131 AAG
* * *
16708471 ATAGGAGAACCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTCCCCAT
1 ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
* * * **
16708536 ATTGGTGGCGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCATGTA-TCGGT-ATGAAGTAGATC
66 ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACT-GGTGGCGAAGTAGATC
*
16708599 AAAG
130 GAAG
* * * * *
16708603 GTAGCAGATCTTGTCTTCAC-GTATTGGT-GTGAAGTAGATCGAAGATGACAGATCTTGTCTTCA
1 ATAGCAGATCCTGTCTTC-CTATATTGGTAG-GAAGTGGATCGAAGATG-CAGATCTTGTCTTCC
* * * * * * * * ** *
16708666 TATATTAG-CGTGAAATAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAATAGA
63 CATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGA
16708730 TCGAAG
128 TCGAAG
16708736 A
1 A
16708737 AAATAGATCT
Statistics
Matches: 684, Mismatches: 90, Indels: 40
0.84 0.11 0.05
Matches are distributed among these distances:
127 31 0.05
129 1 0.00
131 2 0.00
132 325 0.48
133 226 0.33
134 97 0.14
135 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (133 bp):
ATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT
ACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATACTGGTGGCGAAGTAGATCG
AAG
Found at i:16717332 original size:42 final size:42
Alignment explanation
Indices: 16717246--16717332 Score: 120
Period size: 42 Copynumber: 2.1 Consensus size: 42
16717236 TATGTTTGAG
* *
16717246 TCATAAATTAGACGTGATGTTTCATTATGTTTGTTATATGAT
1 TCATAAATTAGACGTGATGTTTCACTATGTTTGTTACATGAT
* * * *
16717288 TCATAAATTCGATGTGATGTTTCACTATGTTTTTTACATTAT
1 TCATAAATTAGACGTGATGTTTCACTATGTTTGTTACATGAT
16717330 TCA
1 TCA
16717333 AGAAAGTAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (42 bp):
TCATAAATTAGACGTGATGTTTCACTATGTTTGTTACATGAT
Found at i:16722701 original size:39 final size:39
Alignment explanation
Indices: 16722658--16722775 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 39
16722648 TCATATTTAA
* * *
16722658 CATATAGTCACATAACATACAAGCATATATCACCATACT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
* * * * * *
16722697 CATATAATCTCATGACGTTTAAGCATATTTCATAATACT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
** * *
16722736 TGTAAAATCACATAACATTCAAGCATATACCACAATACT
1 CATATAATCACATAACATTCAAGCATATATCACAATACT
16722775 C
1 C
16722776 TAAAACATCT
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.30
Consensus pattern (39 bp):
CATATAATCACATAACATTCAAGCATATATCACAATACT
Found at i:16724381 original size:22 final size:22
Alignment explanation
Indices: 16724355--16724406 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
16724345 GATTTTATTT
16724355 AAAACATGTGA-TTTAACA-ACTA
1 AAAACAT-TGATTTTAA-AGACTA
16724377 AAAAC-TTGATTTTAAAGACTA
1 AAAACATTGATTTTAAAGACTA
16724398 AATAACATT
1 AA-AACATT
16724407 TAAAAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.15
21 12 0.46
22 8 0.31
23 2 0.08
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.31
Consensus pattern (22 bp):
AAAACATTGATTTTAAAGACTA
Found at i:16731229 original size:19 final size:19
Alignment explanation
Indices: 16731205--16731248 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
16731195 AATTAAAATG
16731205 TTTTTATTACTAATT-ATAT
1 TTTTTATTACTAATTGA-AT
*
16731224 TTTTTATTTCTAATTGAAT
1 TTTTTATTACTAATTGAAT
16731243 TTTTTA
1 TTTTTA
16731249 ACATTACTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTATTACTAATTGAAT
Found at i:16738454 original size:22 final size:22
Alignment explanation
Indices: 16738423--16738466 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
16738413 AAAAGTTTGT
16738423 ATGCTAATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
*
16738445 ATGCTCATTCATGAAATCAAAG
1 ATGCTAATTCATGAAATCAAAG
16738467 CTACTAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (22 bp):
ATGCTAATTCATGAAATCAAAG
Found at i:16741868 original size:16 final size:16
Alignment explanation
Indices: 16741849--16741880 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16741839 TTCCTTCAGA
16741849 TTTATTTAACTGTTTT
1 TTTATTTAACTGTTTT
*
16741865 TTTATTTAATTGTTTT
1 TTTATTTAACTGTTTT
16741881 CAGCTTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (16 bp):
TTTATTTAACTGTTTT
Found at i:16746921 original size:15 final size:15
Alignment explanation
Indices: 16746893--16746927 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
16746883 ATCAATAACT
16746893 AAAAAAATAAAAATA
1 AAAAAAATAAAAATA
16746908 CAAAAAAAT-AAAATA
1 -AAAAAAATAAAAATA
16746923 AAAAA
1 AAAAA
16746928 GTGTTACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 6 0.32
16 8 0.42
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAAAAATAAAAATA
Found at i:16750508 original size:20 final size:20
Alignment explanation
Indices: 16750474--16750522 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
16750464 TGAAAGAACT
16750474 AAAATAAATAAAAAA-CTATG
1 AAAATAAATAAAAAACCT-TG
**
16750494 AAAATAAATTTAAAACGCTTG
1 AAAATAAATAAAAAAC-CTTG
16750515 AAAATAAA
1 AAAATAAA
16750523 CTCTTTAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 13 0.52
21 10 0.40
22 2 0.08
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.22
Consensus pattern (20 bp):
AAAATAAATAAAAAACCTTG
Found at i:16754825 original size:10 final size:10
Alignment explanation
Indices: 16754824--16754852 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
16754814 AAGTAAAATT
16754824 AAATTAAT-A
1 AAATTAATAA
16754833 AAATTAATAA
1 AAATTAATAA
16754843 AAATTAATAA
1 AAATTAATAA
16754853 TATACTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTAATAA
Found at i:16755281 original size:5 final size:5
Alignment explanation
Indices: 16755266--16755297 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
16755256 TTATAATATT
16755266 TTAATA TTAAA TTAAA TTAAA TTAAA TTAAA T
1 TTAA-A TTAAA TTAAA TTAAA TTAAA TTAAA T
16755298 ACTTATCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TTAAA
Found at i:16755309 original size:39 final size:41
Alignment explanation
Indices: 16755266--16755356 Score: 102
Period size: 39 Copynumber: 2.3 Consensus size: 41
16755256 TTATAATATT
16755266 TTAATATTAAATTAAATTAAATTAA-ATT-AAAT-ACTTATC
1 TTAATATTAAATTAAATTAAATTAATATTAAAATGA-TTATC
* ** *
16755305 TTAATAGT--ATTTTATTAATTTAATATTAAAATGATTATC
1 TTAATATTAAATTAAATTAAATTAATATTAAAATGATTATC
16755344 TTAATATTAAATT
1 TTAATATTAAATT
16755357 TAATGTAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
37 12 0.29
38 3 0.07
39 23 0.55
40 1 0.02
41 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (41 bp):
TTAATATTAAATTAAATTAAATTAATATTAAAATGATTATC
Found at i:16755611 original size:25 final size:25
Alignment explanation
Indices: 16755572--16755619 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
16755562 TTGTAAAGAG
*
16755572 AAAATTCTCTGAAGAGATTATTTCAA
1 AAAATTCTCTAAAGAGATT-TTTCAA
*
16755598 AAAATT-TCTAAAGATATTTTTC
1 AAAATTCTCTAAAGAGATTTTTC
16755620 TAATATACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 10 0.50
26 6 0.30
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (25 bp):
AAAATTCTCTAAAGAGATTTTTCAA
Found at i:16756014 original size:43 final size:43
Alignment explanation
Indices: 16755953--16756061 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 43
16755943 TTGAGTAAGT
*
16755953 CGAAGCAATTATATTGGCACACAAGGTGTACCATC-GAGCAAGC
1 CGAAGCAATTATATTGGCACACAAGGTGTACCATCGGA-CAAAC
* * *
16755996 CGAAGCAATTATATTGGCACACGAGGTGTATCATCGGACAAAT
1 CGAAGCAATTATATTGGCACACAAGGTGTACCATCGGACAAAC
* *
16756039 CGAAGCAATTATACTCGCACACA
1 CGAAGCAATTATATTGGCACACA
16756062 TAGTGTTAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (43 bp):
CGAAGCAATTATATTGGCACACAAGGTGTACCATCGGACAAAC
Found at i:16757825 original size:4 final size:4
Alignment explanation
Indices: 16757816--16757855 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
16757806 TTATTTCTCG
16757816 TTAT TTAT TTAT TTA- TTAT TTAT TTATT TTAT TCTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT T-TAT TTA
16757856 ATCTATTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 3 0.09
4 22 0.67
5 8 0.24
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:16757836 original size:15 final size:15
Alignment explanation
Indices: 16757816--16757844 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16757806 TTATTTCTCG
16757816 TTATTTATTTATTTA
1 TTATTTATTTATTTA
16757831 TTATTTATTTATTT
1 TTATTTATTTATTT
16757845 TATTCTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:16761809 original size:51 final size:51
Alignment explanation
Indices: 16761745--16761852 Score: 135
Period size: 51 Copynumber: 2.1 Consensus size: 51
16761735 AATGAAAAAC
* * * * ** *
16761745 AAAATGGAGAAATGGAATTATTTTAAAATGAATGTGATTTTCTCCAAAATG
1 AAAATGGAAAAATGAAATCATTTGAAAATGAATAAGATTTTATCCAAAATG
* *
16761796 AAAATGGAAAAATGAAATCATTTGAAAATGAATAAGGTTTTATCTAAAATG
1 AAAATGGAAAAATGAAATCATTTGAAAATGAATAAGATTTTATCCAAAATG
16761847 AAAATG
1 AAAATG
16761853 AACTGAAAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.31
Consensus pattern (51 bp):
AAAATGGAAAAATGAAATCATTTGAAAATGAATAAGATTTTATCCAAAATG
Found at i:16762987 original size:20 final size:20
Alignment explanation
Indices: 16762958--16762998 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16762948 ATCAAATTGG
*
16762958 TTTAATTAACATAAACTTAA
1 TTTAACTAACATAAACTTAA
* *
16762978 TTTAACTAACTTAACCTTAA
1 TTTAACTAACATAAACTTAA
16762998 T
1 T
16762999 CAATACTTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAACTAACATAAACTTAA
Found at i:16764689 original size:39 final size:39
Alignment explanation
Indices: 16764630--16764708 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
16764620 TGTAAATCAT
16764630 AACCAACTGAAGTAACCTTTAACAAAGAATAAACACAAC
1 AACCAACTGAAGTAACCTTTAACAAAGAATAAACACAAC
* *
16764669 AACCATCTGAAGTAAGCTTTAACAAAGAATAAACACAAC
1 AACCAACTGAAGTAACCTTTAACAAAGAATAAACACAAC
16764708 A
1 A
16764709 CCTGTCCAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.53, C:0.22, G:0.09, T:0.16
Consensus pattern (39 bp):
AACCAACTGAAGTAACCTTTAACAAAGAATAAACACAAC
Found at i:16768711 original size:8 final size:8
Alignment explanation
Indices: 16768698--16768727 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
16768688 TTATCAGCTA
*
16768698 TTATTATT
1 TTATTAAT
16768706 TTATTAAT
1 TTATTAAT
16768714 TTATTAAT
1 TTATTAAT
16768722 TTATTA
1 TTATTA
16768728 TTCCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTATTAAT
Found at i:16768995 original size:26 final size:27
Alignment explanation
Indices: 16768945--16768995 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
16768935 AATTAATAAA
*
16768945 TTCTCTTTAAGTTTTTCTTTCAAGAAT
1 TTCTCTTTAAGTTTTTCTTTAAAGAAT
16768972 TTCTC-TTAAG-TTTTCTTTTAAAGA
1 TTCTCTTTAAGTTTTTC-TTTAAAGA
16768996 GTAGTTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 12 0.55
27 5 0.23
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.55
Consensus pattern (27 bp):
TTCTCTTTAAGTTTTTCTTTAAAGAAT
Found at i:16769178 original size:13 final size:14
Alignment explanation
Indices: 16769162--16769190 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
16769152 TTTCCATCTA
16769162 TCTTCTTTATT-TT
1 TCTTCTTTATTGTT
16769175 TCTTCTTTATTGTT
1 TCTTCTTTATTGTT
16769189 TC
1 TC
16769191 AATATTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.72
Consensus pattern (14 bp):
TCTTCTTTATTGTT
Found at i:16769295 original size:27 final size:27
Alignment explanation
Indices: 16769264--16769317 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
16769254 CAACATAAAG
16769264 AGTCTGTCGAG-ACATTAAACATGGGGT
1 AGTCTG-CGAGAACATTAAACATGGGGT
* *
16769291 AGTCTGCTAGAACATTAAACGTGGGGT
1 AGTCTGCGAGAACATTAAACATGGGGT
16769318 TACATGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (27 bp):
AGTCTGCGAGAACATTAAACATGGGGT
Found at i:16769413 original size:94 final size:94
Alignment explanation
Indices: 16769243--16769429 Score: 275
Period size: 94 Copynumber: 2.0 Consensus size: 94
16769233 TTTTATTTGA
* ** ** *
16769243 CTCGGCTATAGCAACATAAAGAGTCTGTCGAGACATTAAACATGGGGTAGTCTGCTAGAACATTA
1 CTCGGCTATAACAACATAAAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTA
*
16769308 AACGTGGGGTTACATGTGTAAGACCATAG
66 AACATGGGGTTACATGTGTAAGACCATAG
* * *
16769337 CTCGGTTATAACAACATAGAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTG
1 CTCGGCTATAACAACATAAAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTA
*
16769402 AACATGTGGTTACATGTGTAAGACCATA
66 AACATGGGGTTACATGTGTAAGACCATA
16769430 ACTCAACTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (94 bp):
CTCGGCTATAACAACATAAAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTA
AACATGGGGTTACATGTGTAAGACCATAG
Found at i:16769449 original size:94 final size:94
Alignment explanation
Indices: 16769248--16769453 Score: 259
Period size: 94 Copynumber: 2.2 Consensus size: 94
16769238 TTTGACTCGG
* * ** ** * *
16769248 CTATAGCAACATAAAGAGTCTGTCGAGACATTAAACATGGGGTAGTCTGCTAGAACATTAAACGT
1 CTATAACAACATAGAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTAAACAT
* **
16769313 GGGGTTACATGTGTAAGACCATAGCTCGG
66 GGGGTTACATGTGTAAGACCATAACTCAA
* *
16769342 TTATAACAACATAGAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTGAACAT
1 CTATAACAACATAGAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTAAACAT
*
16769407 GTGGTTACATGTGTAAGACCATAACTCAA
66 GGGGTTACATGTGTAAGACCATAACTCAA
* * *
16769436 CTATGATAGCATAGAGAG
1 CTATAACAACATAGAGAG
16769454 CCCGTTGGGA
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (94 bp):
CTATAACAACATAGAGAGTCTACCGAGACATTAAACACAGGGTAGTCCGCTAGAACATTAAACAT
GGGGTTACATGTGTAAGACCATAACTCAA
Found at i:16769466 original size:94 final size:94
Alignment explanation
Indices: 16769271--16769481 Score: 251
Period size: 94 Copynumber: 2.2 Consensus size: 94
16769261 AAGAGTCTGT
* * *
16769271 CGAGACATTAAACATGGGGTAGTCTGCTAGAACATTAAACGTGGGGTTACATGTGTAAGACCATA
1 CGAGACATTAAACATAGGGTAGTCCGCTAGAACATTAAACATGGGGTTACATGTGTAAGACCATA
* *** * *
16769336 GCTCGGTTATAACAACATAGAGAGTCTAC
66 ACTCAACTATAACAACATAGAGAGCCCAC
* * *
16769365 CGAGACATTAAACACAGGGTAGTCCGCTAGAACATTGAACATGTGGTTACATGTGTAAGACCATA
1 CGAGACATTAAACATAGGGTAGTCCGCTAGAACATTAAACATGGGGTTACATGTGTAAGACCATA
* * * **
16769430 ACTCAACTATGATAGCATAGAGAGCCCGT
66 ACTCAACTATAACAACATAGAGAGCCCAC
* *
16769459 TGGGACATTAAACATAGGGTAGT
1 CGAGACATTAAACATAGGGTAGT
16769482 TGTTAGAGTA
Statistics
Matches: 97, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (94 bp):
CGAGACATTAAACATAGGGTAGTCCGCTAGAACATTAAACATGGGGTTACATGTGTAAGACCATA
ACTCAACTATAACAACATAGAGAGCCCAC
Found at i:16776685 original size:74 final size:74
Alignment explanation
Indices: 16776564--16777666 Score: 1645
Period size: 74 Copynumber: 15.0 Consensus size: 74
16776554 AACAAAGGCA
* *
16776564 ACAATCCATGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16776629 ACACAACAT
66 ACACAACAT
* * *
16776638 ACAATCCACATGTTAGAAATCATCAACTGCTTTGCATGCTAACAATCTTAACACGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16776703 ACACAACAT
66 ACACAACAT
* * ** *
16776712 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACAAGCTAACAATCAAAACTCGCTATCTAAGC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16776777 ACACAACAT
66 ACACAACAT
* *
16776786 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAACCTTAACGCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16776851 ACACAACAT
66 ACACAACAT
* *
16776860 ACAACCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16776925 ACACAACAT
66 ACACAACAT
*
16776934 ACAATCCACATGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAA-TGCGCTATCTAAA
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACT-CGCTATCTAAA
16776998 CACACAACAT
65 CACACAACAT
* ** *
16777008 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCAGAACTCGCTATCTAAGC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777073 ACACAACAT
66 ACACAACAT
* *
16777082 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAACCTTAACGCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777147 ACACAACAT
66 ACACAACAT
* * * * * *
16777156 ACAACCCAC-TGTTAGAATTCATCAACTGCTTAACATGCTAGCAATCATAACTTGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777220 ACACAACAT
66 ACACAACAT
* * * * *
16777229 ACAATCCATGTGTTAGAAATCATCAACTGCTTTACAGGCTAACAACCTTAGCGCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777294 ACACAACAT
66 ACACAACAT
*
16777303 ACAATCCACGTGTTAG-AATCCATCAACTGTTTTACATGCTAACAATCTTAACTCGCTATCTAAA
1 ACAATCCACGTGTTAGAAAT-CATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAA
16777367 C-CACAACAT
65 CACACAACAT
*
16777376 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777441 -CACAACAT
66 ACACAACAT
* *
16777449 ACAATCCACGTGTTAGAATTCATCAACTGCTTTACATGCTAACAATCTTAACTTGCTATCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
16777514 ACACAACAT
66 ACACAACAT
* * * * * * * *
16777523 GCAACCCACATGTT-----TCATCAACTTCTTTACATGCTAACAACCTTATCGCGCTACCTAAAC
1 ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
*
16777583 ACAAAACA-
66 ACACAACAT
* ** *
16777591 AAAATTCCACGTACTAG-AATCCATCAACTGCTTTACATGCTAACAATCTTAACTCACTATCTAA
1 ACAA-TCCACGTGTTAGAAAT-CATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAA
16777655 ACACACAACAT
64 ACACACAACAT
16777666 A
1 A
16777667 TAATAGAGTA
Statistics
Matches: 927, Mismatches: 89, Indels: 25
0.89 0.09 0.02
Matches are distributed among these distances:
68 2 0.00
69 53 0.06
73 209 0.23
74 661 0.71
75 2 0.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.26
Consensus pattern (74 bp):
ACAATCCACGTGTTAGAAATCATCAACTGCTTTACATGCTAACAATCTTAACTCGCTATCTAAAC
ACACAACAT
Found at i:16779303 original size:17 final size:18
Alignment explanation
Indices: 16779265--16779301 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
16779255 TGGTTCATGC
16779265 AAAGAGCAATGCAGAAAG
1 AAAGAGCAATGCAGAAAG
*
16779283 AAAGAG-AATGGAG-AAG
1 AAAGAGCAATGCAGAAAG
16779299 AAA
1 AAA
16779302 AGTTAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.59, C:0.05, G:0.30, T:0.05
Consensus pattern (18 bp):
AAAGAGCAATGCAGAAAG
Found at i:16787970 original size:14 final size:14
Alignment explanation
Indices: 16787951--16787980 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
16787941 TGACTTGGCA
16787951 TATTGTGTAATTTT
1 TATTGTGTAATTTT
16787965 TATTGTGTAATTTT
1 TATTGTGTAATTTT
16787979 TA
1 TA
16787981 AAGTATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (14 bp):
TATTGTGTAATTTT
Found at i:16789038 original size:43 final size:42
Alignment explanation
Indices: 16788934--16789057 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
16788924 AATGATTTCG
* * * *
16788934 TGTAAGACCATGTCTGGGACATCAGCATTGATATGAGATTACG
1 TGTAAGACCATGTCTGGGACAT-GGCATTGATATGTGATAACA
* *
16788977 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACA-TGGCATTGATATGTGATAACA
* * *
16789020 TGTAAGACCATATATGGGATATGGCATTG-TATGTGATA
1 TGTAAGACCATGTCTGGGACATGGCATTGATATGTGATA
16789058 TATGTGTTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 9 0.13
42 7 0.10
43 52 0.75
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATTGATATGTGATAACA
Found at i:16789725 original size:22 final size:22
Alignment explanation
Indices: 16789700--16789982 Score: 137
Period size: 22 Copynumber: 12.5 Consensus size: 22
16789690 TGAGCAAACT
16789700 AATGCTGTCCGAATGTTGGTTA
1 AATGCTGTCCGAATGTTGGTTA
*
16789722 AATGCTATCCGAATGTTGGTTA
1 AATGCTGTCCGAATGTTGGTTA
* * **
16789744 AATGCTGTCCATAAT-TAAGCATA
1 AATGCTGTCC-GAATGT-TGGTTA
*
16789767 CTAATGCTGTCCAAATGTTGGTTA
1 --AATGCTGTCCGAATGTTGGTTA
* * * *
16789791 AATGTTATCCGAATATTGTTTA
1 AATGCTGTCCGAATGTTGGTTA
* * **
16789813 AAAGCTTTCC--ATAGTTAAGCATA
1 AATGCTGTCCGAAT-GTT--GGTTA
* *
16789836 CTAATGCTGTCTGAATGTTAGTTA
1 --AATGCTGTCCGAATGTTGGTTA
* *
16789860 AATGTTGTCCGAATATT-GTTAA
1 AATGCTGTCCGAATGTTGGTT-A
** *
16789882 AATGCTGTCTTTAA--TTGAGCATA
1 AATGCTGTC-CGAATGTTG-G-TTA
* *
16789905 CTAATGTTGTCCGAATGATGGTTA
1 --AATGCTGTCCGAATGTTGGTTA
* *
16789929 AATGCCGTTCGAATGTTGGTTA
1 AATGCTGTCCGAATGTTGGTTA
* * *
16789951 AATGTTGTCTGAATGTTGCTTA
1 AATGCTGTCCGAATGTTGGTTA
16789973 AATGCTGTCC
1 AATGCTGTCC
16789983 ATTTAATGCT
Statistics
Matches: 190, Mismatches: 50, Indels: 42
0.67 0.18 0.15
Matches are distributed among these distances:
20 2 0.01
21 7 0.04
22 121 0.64
23 13 0.07
24 13 0.07
25 27 0.14
26 5 0.03
27 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (22 bp):
AATGCTGTCCGAATGTTGGTTA
Found at i:16789960 original size:69 final size:69
Alignment explanation
Indices: 16789692--16789959 Score: 322
Period size: 69 Copynumber: 3.9 Consensus size: 69
16789682 TTCATATTTG
* *
16789692 AGCAAACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATGTTGGTTAAATGCTGTCCATA
1 AGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATATTGGTTAAATGCTGTCCATA
16789757 ATTA
66 ATTA
* * * * *
16789761 AGCATACTAATGCTGTCCAAATGTTGGTTAAATGTTATCCGAATATTGTTTAAAAGCTTTCCATA
1 AGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATATTGGTTAAATGCTGTCCATA
*
16789826 GTTA
66 ATTA
* * * * **
16789830 AGCATACTAATGCTGTCTGAATGTTAGTTAAATGTTGTCCGAATATT-GTTAAAATGCTGTCTTT
1 AGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATATTGGTT-AAATGCTGTCCAT
*
16789894 AATTG
65 AATTA
* * ** * * *
16789899 AGCATACTAATGTTGTCCGAATGATGGTTAAATGCCGTTCGAATGTTGGTTAAATGTTGTC
1 AGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATATTGGTTAAATGCTGTC
16789960 TGAATGTTGC
Statistics
Matches: 169, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
68 2 0.01
69 164 0.97
70 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (69 bp):
AGCATACTAATGCTGTCCGAATGTTGGTTAAATGCTATCCGAATATTGGTTAAATGCTGTCCATA
ATTA
Found at i:16798226 original size:31 final size:31
Alignment explanation
Indices: 16798185--16798243 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
16798175 ATCCAATTTT
* **
16798185 AAAAAGTCGAATTTGATTATTAACCTTTTAA
1 AAAAAATCGAATTTGACCATTAACCTTTTAA
16798216 AAAAAATCGAATTTGACCATTAACCTTT
1 AAAAAATCGAATTTGACCATTAACCTTT
16798244 AGAAAGAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (31 bp):
AAAAAATCGAATTTGACCATTAACCTTTTAA
Found at i:16798610 original size:18 final size:19
Alignment explanation
Indices: 16798583--16798619 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
16798573 TTGATTAATT
16798583 TAAAAAAAAAT-TTAAAAA
1 TAAAAAAAAATATTAAAAA
*
16798601 TAAAATAAAATATTAAAAA
1 TAAAAAAAAATATTAAAAA
16798620 ATGGAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
TAAAAAAAAATATTAAAAA
Found at i:16798619 original size:20 final size:18
Alignment explanation
Indices: 16798583--16798621 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
16798573 TTGATTAATT
*
16798583 TAAAAAAAAATTTAAAAA
1 TAAAAAAAAATTAAAAAA
16798601 TAAAATAAAATATTAAAAAA
1 TAAAA-AAAA-ATTAAAAAA
16798621 T
1 T
16798622 GGAGAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TAAAAAAAAATTAAAAAA
Found at i:16799615 original size:53 final size:53
Alignment explanation
Indices: 16799558--16799939 Score: 260
Period size: 53 Copynumber: 7.2 Consensus size: 53
16799548 CCTAAACTCT
* **
16799558 TAATTATTTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTAT
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
* * *
16799611 TAATTATTTTAAAT-AAAT-TAAAACTGTAATTTTCCTAA--TA-TAATTTAAAATT-C
1 TAATTATCTTAATTAAAATCT-AAA-T-T-ATTAT-CTAACCTATTAATTT-AAATTCC
* * **
16799664 TAATGATCTTAACTAAAATCTAAAATTATTATCTAACCTATTAATTTAAATTAA
1 TAATTATCTTAATTAAAATCT-AAATTATTATCTAACCTATTAATTTAAATTCC
* * *
16799718 TAATGATCTTAAAT-AGAT-TAGAACTTTAATTATCCTAA--T-TTAATTTAAACTT-C
1 TAATTATCTTAATTAAAATCTA-AA--TT-ATTAT-CTAACCTATTAATTTAAA-TTCC
* * * *
16799771 TAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAA-TGAAGTTCC
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
* * * *
16799823 TAATTATCTT-ATCT-AAAT-TAAA-AATCTAAT-TATCCTAATTTATTTAAACTCC
1 TAATTATCTTAAT-TAAAATCTAAATTAT-T-ATCTAACCT-ATTAATTTAAATTCC
* * * *
16799875 TAATTATCTTAATTAAAATCTAAATTATTATCCAACCTATCAATTTAAAATCT
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
16799928 TAATTATCTTAA
1 TAATTATCTTAA
16799940 CTAAGGCTCT
Statistics
Matches: 264, Mismatches: 31, Indels: 68
0.73 0.09 0.19
Matches are distributed among these distances:
49 2 0.01
50 13 0.05
51 24 0.09
52 49 0.19
53 99 0.38
54 51 0.19
55 18 0.07
56 8 0.03
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.44
Consensus pattern (53 bp):
TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
Found at i:16799697 original size:107 final size:105
Alignment explanation
Indices: 16799550--16799939 Score: 487
Period size: 107 Copynumber: 3.7 Consensus size: 105
16799540 CTAGGAACCC
* *
16799550 TAAAC-TCTTAATTATTTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAA
1 TAAACTTC-TAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAA
* * *
16799614 TTATTTTAAATAAATTAAAACTGTAATTTTCCTAATATAATT
65 TTATCTTAAATAAATTAAAACTCTAATTATCCTAAT-TAATT
* * *
16799656 TAAAATTCTAATGATCTTAACTAAAATCTAAAATTATTATCTAACCTATTAATTTAAATTAATAA
1 TAAACTTCTAATTATCTTAACTAAAATCT-AAATTATTATCTAACCTATTAATTTAAATTATTAA
* * * *
16799721 TGATCTTAAATAGATTAGAACTTTAATTATCCTAATTTAATT
65 TTATCTTAAATAAATTAAAACTCTAATTATCCTAA-TTAATT
* * * **
16799763 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAA-TGAAGTTCCTAAT
1 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
** * *
16799827 TATCTTATCTAAATTAAAAATCTAATTATCCTAATTTATT
66 TATCTTAAATAAATTAAAACTCTAATTATCCTAATTAATT
* * * * * *
16799867 TAAACTCCTAATTATCTTAATTAAAATCTAAATTATTATCCAACCTATCAATTTAAAATCTTAAT
1 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
16799932 TATCTTAA
66 TATCTTAA
16799940 CTAAGGCTCT
Statistics
Matches: 244, Mismatches: 36, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
104 51 0.21
105 52 0.21
106 43 0.18
107 97 0.40
108 1 0.00
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.44
Consensus pattern (105 bp):
TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
TATCTTAAATAAATTAAAACTCTAATTATCCTAATTAATT
Found at i:16799855 original size:21 final size:20
Alignment explanation
Indices: 16799831--16799902 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 20
16799821 CCTAATTATC
16799831 TTATCTAAATTAAAAATCTAA
1 TTATCTAAATT-AAAATCTAA
*
16799852 TTATCCTAATTTATTTAAACTCCTAA
1 TTAT-CTAA---A-TTAAAAT-CTAA
*
16799878 TTATCTTAATTAAAATCTAAA
1 TTATCTAAATTAAAATCT-AA
16799899 TTAT
1 TTAT
16799903 TATCCAACCT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
20 2 0.05
21 16 0.39
22 5 0.12
25 8 0.20
26 10 0.24
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATCTAAATTAAAATCTAA
Found at i:16800279 original size:19 final size:19
Alignment explanation
Indices: 16800220--16800280 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
16800210 CCTTCATTCC
*
16800220 TTCATTTCCTCGGTTCCCT
1 TTCATTTCCTCGGTTCTCT
* * *
16800239 CTTCAATTAT-CGCAGTTTTCT
1 -TTC-ATT-TCCTCGGTTCTCT
16800260 TTCATTTCCTCGGTTCTCT
1 TTCATTTCCTCGGTTCTCT
16800279 TT
1 TT
16800281 TCTCCATATC
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
18 1 0.03
19 13 0.42
20 6 0.19
21 10 0.32
22 1 0.03
ACGTcount: A:0.10, C:0.30, G:0.10, T:0.51
Consensus pattern (19 bp):
TTCATTTCCTCGGTTCTCT
Found at i:16805417 original size:14 final size:14
Alignment explanation
Indices: 16805394--16805433 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
16805384 ACAGAAAAGT
*
16805394 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
16805408 AAATCATTTTACGG
1 AAAACATTTTACAG
16805422 AAAACATTTTAC
1 AAAACATTTTAC
16805434 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:16805419 original size:34 final size:35
Alignment explanation
Indices: 16805359--16805425 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
16805349 CAAACACCAG
* *
16805359 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
16805394 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
16805426 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:16807522 original size:22 final size:22
Alignment explanation
Indices: 16807449--16807523 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
16807439 TGCACCTGTA
*
16807449 TATGAGAGCCCCTTGTGTGGGACG
1 TATGAGATCCCCTTG-G-GGGACG
* * **
16807473 TATAAGATCCCTTTATGGGACG
1 TATGAGATCCCCTTGGGGGACG
*
16807495 TTTGAGATCCCCTTGGGGGACG
1 TATGAGATCCCCTTGGGGGACG
16807517 TATGAGA
1 TATGAGA
16807524 GCACCGTAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
22 29 0.73
24 11 0.28
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (22 bp):
TATGAGATCCCCTTGGGGGACG
Found at i:16808622 original size:9 final size:9
Alignment explanation
Indices: 16808608--16808683 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
16808598 TTTGTTTAAA
16808608 AATTAACCG
1 AATTAACCG
*
16808617 AATTAACCT
1 AATTAACCG
*
16808626 AATTACCCG
1 AATTAACCG
*
16808635 AATTAATCG
1 AATTAACCG
16808644 AATT-ACCTG
1 AATTAACC-G
*
16808653 AATTAACCA
1 AATTAACCG
*
16808662 AATTACCCG
1 AATTAACCG
16808671 AATTAACCG
1 AATTAACCG
16808680 AATT
1 AATT
16808684 GAATCACTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 2 0.04
9 50 0.91
10 3 0.05
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:16808635 original size:18 final size:18
Alignment explanation
Indices: 16808608--16808683 Score: 107
Period size: 18 Copynumber: 4.2 Consensus size: 18
16808598 TTTGTTTAAA
* *
16808608 AATTAACCGAATTAACCT
1 AATTACCCGAATTAACCG
*
16808626 AATTACCCGAATTAATCG
1 AATTACCCGAATTAACCG
* *
16808644 AATTACCTGAATTAACCA
1 AATTACCCGAATTAACCG
16808662 AATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
16808680 AATT
1 AATT
16808684 GAATCACTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:16808656 original size:36 final size:36
Alignment explanation
Indices: 16808608--16808683 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
16808598 TTTGTTTAAA
* *
16808608 AATTAACCGAATTAACCTAATTACCCGAATTAATCG
1 AATTAACCGAATTAACCAAATTACCCGAATTAACCG
16808644 AATT-ACCTGAATTAACCAAATTACCCGAATTAACCG
1 AATTAACC-GAATTAACCAAATTACCCGAATTAACCG
16808680 AATT
1 AATT
16808684 GAATCACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 3 0.08
36 34 0.92
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (36 bp):
AATTAACCGAATTAACCAAATTACCCGAATTAACCG
Found at i:16808734 original size:6 final size:6
Alignment explanation
Indices: 16808723--16808747 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
16808713 ACTTTTAGAC
16808723 TTTAGT TTTAGT TTTAGT TTTAGT T
1 TTTAGT TTTAGT TTTAGT TTTAGT T
16808748 GTAGAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:16808808 original size:13 final size:13
Alignment explanation
Indices: 16808792--16808816 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16808782 AATTTTTATG
16808792 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
16808805 ATTGGGTTGGGT
1 ATTGGGTTGGGT
16808817 TGAATACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:16809939 original size:26 final size:26
Alignment explanation
Indices: 16809906--16809972 Score: 125
Period size: 26 Copynumber: 2.5 Consensus size: 26
16809896 AAACTCTTCT
16809906 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
16809932 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
16809958 AAAAGAAAAACTCAA
1 AAAAG-AAAACTCAA
16809973 AAAGACTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 31 0.77
27 9 0.22
ACGTcount: A:0.61, C:0.12, G:0.10, T:0.16
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTA
Found at i:16815238 original size:18 final size:19
Alignment explanation
Indices: 16815215--16815267 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
16815205 TGTTGGAGCA
*
16815215 GAAATATCGATATCTT-AG
1 GAAATATCGATACCTTAAG
16815233 GAAATACATCGATACCTTAAG
1 GAAAT--ATCGATACCTTAAG
*
16815254 AAAAGTATCGATAC
1 GAAA-TATCGATAC
16815268 TGGATGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 5 0.17
20 18 0.62
21 5 0.17
22 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (19 bp):
GAAATATCGATACCTTAAG
Found at i:16816846 original size:31 final size:31
Alignment explanation
Indices: 16816811--16816957 Score: 179
Period size: 31 Copynumber: 4.8 Consensus size: 31
16816801 GATAATGCAT
*
16816811 GGTATGAATATAAAAATATGAATGATTACAG
1 GGTATGAATATAAAAATATGAATGATTACAA
* *
16816842 GGTATGTATATAAAAGTATGAATGATTACAA
1 GGTATGAATATAAAAATATGAATGATTACAA
* *
16816873 GGTATGAATAT-GAAATATGAATGATTACAT
1 GGTATGAATATAAAAATATGAATGATTACAA
* * * * *
16816903 GGCATGACTATGAAAGTATGTATGATTACAA
1 GGTATGAATATAAAAATATGAATGATTACAA
**
16816934 GGTATGAATATGTAAATATGAATG
1 GGTATGAATATAAAAATATGAATG
16816958 GTTGATGCCC
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
30 25 0.26
31 72 0.74
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.31
Consensus pattern (31 bp):
GGTATGAATATAAAAATATGAATGATTACAA
Found at i:16816879 original size:17 final size:17
Alignment explanation
Indices: 16816827--16816942 Score: 81
Period size: 17 Copynumber: 7.4 Consensus size: 17
16816817 AATATAAAAA
*
16816827 TATGAATGATTACAGGG
1 TATGAATGATTACAAGG
* *
16816844 TATGTAT-A-TA-AAAG
1 TATGAATGATTACAAGG
16816858 TATGAATGATTACAAGG
1 TATGAATGATTACAAGG
*
16816875 TATGAAT-ATGA-AA--
1 TATGAATGATTACAAGG
*
16816888 TATGAATGATTACATGG
1 TATGAATGATTACAAGG
* * *
16816905 CATGACT-ATGA-AA-G
1 TATGAATGATTACAAGG
*
16816919 TATGTATGATTACAAGG
1 TATGAATGATTACAAGG
16816936 TATGAAT
1 TATGAAT
16816943 ATGTAAATAT
Statistics
Matches: 72, Mismatches: 17, Indels: 20
0.66 0.16 0.18
Matches are distributed among these distances:
13 7 0.10
14 16 0.22
15 10 0.14
16 11 0.15
17 28 0.39
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (17 bp):
TATGAATGATTACAAGG
Found at i:16816895 original size:61 final size:61
Alignment explanation
Indices: 16816811--16816957 Score: 215
Period size: 61 Copynumber: 2.4 Consensus size: 61
16816801 GATAATGCAT
* *
16816811 GGTATGAATATAAAAATATGAATGATTACAGGGTATGTA-TATAAAAGTATGAATGATTACAA
1 GGTATGAATAT-GAAATATGAATGATTACAGGGCATG-ACTATAAAAGTATGAATGATTACAA
* * *
16816873 GGTATGAATATGAAATATGAATGATTACATGGCATGACTATGAAAGTATGTATGATTACAA
1 GGTATGAATATGAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAA
16816934 GGTATGAATATGTAAATATGAATG
1 GGTATGAATATG-AAATATGAATG
16816958 GTTGATGCCC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
60 1 0.01
61 55 0.71
62 22 0.28
ACGTcount: A:0.44, C:0.04, G:0.21, T:0.31
Consensus pattern (61 bp):
GGTATGAATATGAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAA
Found at i:16818888 original size:40 final size:40
Alignment explanation
Indices: 16818858--16819187 Score: 536
Period size: 40 Copynumber: 8.3 Consensus size: 40
16818848 GGATTATGAT
* * * *
16818858 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16818898 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
16818938 CCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
16818978 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16819018 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16819058 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
16819098 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
16819138 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
16819177 CCGAAGGCATT
1 CCGAAGGCATT
16819188 TGAACGAGGA
Statistics
Matches: 275, Mismatches: 15, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 34 0.12
40 241 0.88
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:16818904 original size:80 final size:80
Alignment explanation
Indices: 16818805--16819187 Score: 513
Period size: 80 Copynumber: 4.8 Consensus size: 80
16818795 TTGAATGCTG
* * * * * * * *
16818805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTATGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTGATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
16818868 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA
* *
16818885 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGATTAAATCCGGGTTAAGTCCCGAAGGCATTC
16818950 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
16818965 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG-TTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TGATTAAATCCGGGTTAAGTCCCGAAGGCATT
16819029 CGTGCGAGTTATTAAA
65 CGTGCGAGTTATTAAA
*
16819045 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
16819110 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
* * * * * * *
16819125 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGATTAAATCCGGGTTAAGTCCCGAAGGCATT
16819188 TGAACGAGGA
Statistics
Matches: 276, Mismatches: 23, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
79 36 0.13
80 233 0.84
81 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTGATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:16819018 original size:120 final size:120
Alignment explanation
Indices: 16818805--16819187 Score: 547
Period size: 120 Copynumber: 3.2 Consensus size: 120
16818795 TTGAATGCTG
* * * * * * * * *
16818805 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTATGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * **
16818868 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64 TCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
16818925 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
16818990 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
16819045 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * *
16819110 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
66 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
16819164 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
16819188 TGAACGAGGA
Statistics
Matches: 240, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
119 35 0.15
120 199 0.83
121 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:16821089 original size:18 final size:19
Alignment explanation
Indices: 16821054--16821089 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
16821044 GTGTTATAAT
*
16821054 ATGTCAAGTTGGAATGTTA
1 ATGTCAAGTTGAAATGTTA
16821073 ATGTCAA-TTGAAATGTT
1 ATGTCAAGTTGAAATGTT
16821090 GTGCAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (19 bp):
ATGTCAAGTTGAAATGTTA
Found at i:16823033 original size:5 final size:5
Alignment explanation
Indices: 16823023--16823050 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
16823013 ATTTCGAGTG
16823023 ATTGA ATTGA ATTGA ATTGA ATTGA ATT
1 ATTGA ATTGA ATTGA ATTGA ATTGA ATT
16823051 ATATGCTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (5 bp):
ATTGA
Found at i:16827056 original size:21 final size:23
Alignment explanation
Indices: 16827032--16827079 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
16827022 GTTGAGAAAA
*
16827032 TTATTT-AATTAAAAATTTA-AT
1 TTATTTAAATTAAAAATTAATAT
*
16827053 TTATTTAAATTAATAATTAATAT
1 TTATTTAAATTAAAAATTAATAT
16827076 TTAT
1 TTAT
16827080 GTTGAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.26
22 11 0.48
23 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTATTTAAATTAAAAATTAATAT
Found at i:16835644 original size:15 final size:15
Alignment explanation
Indices: 16835608--16835638 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16835598 GGATCTAGAG
16835608 TCTTCTGATTATTAT
1 TCTTCTGATTATTAT
16835623 TCTTCTGATTATTAT
1 TCTTCTGATTATTAT
16835638 T
1 T
16835639 ACTCTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.06, T:0.61
Consensus pattern (15 bp):
TCTTCTGATTATTAT
Found at i:16848884 original size:21 final size:21
Alignment explanation
Indices: 16848852--16848908 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
16848842 ACTATTGTTG
* *
16848852 AGAAGAAAGTTGCTGCTGTAGA
1 AGAAG-AAGTTGCTGCTGAAAA
* *
16848874 AGAGGAAGTTGTTGCTGAAAA
1 AGAAGAAGTTGCTGCTGAAAA
16848895 AGAAGAAGTTGCTG
1 AGAAGAAGTTGCTG
16848909 ATGATGAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (21 bp):
AGAAGAAGTTGCTGCTGAAAA
Found at i:16849390 original size:17 final size:17
Alignment explanation
Indices: 16849368--16849400 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16849358 ATAAGTACAC
*
16849368 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
16849385 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
16849401 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:16853786 original size:3 final size:3
Alignment explanation
Indices: 16853778--16853811 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
16853768 GGTTTTTTGC
16853778 TGT TGT TGT TGT TGT TGT TGT T-T T-T TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
16853812 GGAGGGGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TGT
Found at i:16857644 original size:16 final size:16
Alignment explanation
Indices: 16857614--16857651 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
16857604 AATTAATTGA
*
16857614 TTTATT-GTTATTATT
1 TTTATTAGTCATTATT
16857629 TTTATTAGTCATTATT
1 TTTATTAGTCATTATT
*
16857645 ATTATTA
1 TTTATTA
16857652 TTATTAGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTATTAGTCATTATT
Found at i:16857645 original size:3 final size:3
Alignment explanation
Indices: 16857615--16857657 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
16857605 ATTAATTGAT
* * *
16857615 TTA TTG TTA TTA TTT TTA TTA GTCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
16857658 GTCTTTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:16857649 original size:22 final size:20
Alignment explanation
Indices: 16857621--16857676 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 20
16857611 TGATTTATTG
16857621 TTATTATTTTTATTAGTCATT
1 TTATTATTTTTATTAGTC-TT
*
16857642 ATTATTATTATTATTAGTCTT
1 -TTATTATTTTTATTAGTCTT
16857663 TTATT-TTTTATATT
1 TTATTATTTT-TATT
16857677 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.10
20 9 0.29
21 2 0.06
22 17 0.55
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (20 bp):
TTATTATTTTTATTAGTCTT
Found at i:16857737 original size:23 final size:25
Alignment explanation
Indices: 16857711--16857771 Score: 76
Period size: 23 Copynumber: 2.6 Consensus size: 25
16857701 ATATAGATCC
16857711 TTTTATTTTATTATAAG-A-TATTA
1 TTTTATTTTATTATAAGTATTATTA
* *
16857734 TTTTATGTT-TT-TAGGTATTATTA
1 TTTTATTTTATTATAAGTATTATTA
16857757 TTTTATTTTATTATA
1 TTTTATTTTATTATA
16857772 CATTTCTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 3 0.10
22 3 0.10
23 21 0.68
24 2 0.06
25 2 0.06
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (25 bp):
TTTTATTTTATTATAAGTATTATTA
Found at i:16859454 original size:3 final size:3
Alignment explanation
Indices: 16859446--16859477 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
16859436 CATGGGGGTT
16859446 TTG TTG TTG TTG TTG TTG TT- TT- TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
16859478 GCAGGGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.00, C:0.00, G:0.28, T:0.72
Consensus pattern (3 bp):
TTG
Found at i:16869320 original size:27 final size:26
Alignment explanation
Indices: 16869289--16869466 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 26
16869279 TAAATTGTAC
16869289 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
16869316 TGCACTAAGTGTGCGAAATGGA-TATG-
1 AGCACTAAGTGTGCG--ATTGACTATGT
* *
16869342 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* *
16869370 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGC--GATTGACTATGT
* *
16869398 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
16869425 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
16869452 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
16869467 GGCTCAATAA
Statistics
Matches: 128, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.05
27 94 0.73
28 24 0.19
29 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:16869350 original size:54 final size:54
Alignment explanation
Indices: 16869290--16869440 Score: 198
Period size: 55 Copynumber: 2.8 Consensus size: 54
16869280 AAATTGTACA
*
16869290 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATGAT-
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAAATGGACTATG-TG
* ** *
16869344 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
*
16869399 GCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGA
16869441 GTTGATTATA
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
54 42 0.49
55 43 0.51
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAAATGGACTATGTG
Found at i:16869405 original size:82 final size:81
Alignment explanation
Indices: 16869290--16869445 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
16869280 AAATTGTACA
* *
16869290 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGA-TATG-ATGCACTAAGT
1 GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCG-AATGGATTATGTA-GCACTAAGT
16869353 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* * *
16869371 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAATGGATTATGTAGCACTAAGTG
*
16869436 TGCGAGTTGA
65 TGCGAATTGA
16869446 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 19 0.29
82 46 0.70
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAATGGATTATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:16869430 original size:55 final size:54
Alignment explanation
Indices: 16869290--16869466 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
16869280 AAATTGTACA
* * *
16869290 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGATATGAT
* * **
16869344 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGA-TATGAT
* *
16869398 GGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTAT-AT
1 -GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGA-TATGAT
*
16869452 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
16869467 GGCTCAATAA
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
54 63 0.60
55 42 0.40
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGGATATGAT
Found at i:16869457 original size:82 final size:81
Alignment explanation
Indices: 16869286--16869466 Score: 213
Period size: 82 Copynumber: 2.2 Consensus size: 81
16869276 GATTAAATTG
* *
16869286 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGGATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATATGATGCACTAA
16869351 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
16869367 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCG-ATTTGATTATG-TAGCAC
1 TACAGCACTAAGTGTGCGA-ATCGACTATGTGGCACTAAGTGTGCGAAATGGA-TATGAT-GCAC
* **
16869430 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
16869449 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
16869467 GGCTCAATAA
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 22 0.27
82 61 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATCGACTATGTGGCACTAAGTGTGCGAAATGGATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:16872948 original size:21 final size:22
Alignment explanation
Indices: 16872914--16872963 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
16872904 TTTTTTAAAA
*
16872914 TTAAAAATTAAAAATTTATTTT
1 TTAAAAATTAAAAATTAATTTT
*
16872936 TTAACAATT-AAAATTAA-TTT
1 TTAAAAATTAAAAATTAATTTT
16872956 TTAAAAAT
1 TTAAAAAT
16872964 GAAGATGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.40
21 7 0.28
22 8 0.32
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAAAAATTAAAAATTAATTTT
Found at i:16875303 original size:3 final size:3
Alignment explanation
Indices: 16875295--16875329 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
16875285 CATGGGGTTT
16875295 TTG TTG TTG TTG TTG TTG TTG TT- TT- TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
16875330 GCAGGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TTG
Found at i:16876643 original size:38 final size:38
Alignment explanation
Indices: 16876567--16876644 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 38
16876557 ACATAAATCG
** *
16876567 ATTTTGATTCTGTATATAAATGTCATTTGTTGGGATTT
1 ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
* * *
16876605 ATTTTGATTGTTTATATAAATGTCACATGTTGATATTT
1 ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
16876643 AT
1 AT
16876645 GTGCAGATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (38 bp):
ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
Found at i:16895139 original size:41 final size:41
Alignment explanation
Indices: 16894991--16895232 Score: 247
Period size: 41 Copynumber: 5.9 Consensus size: 41
16894981 GAGCTTTCGA
* *
16894991 GGCTTTAGCGGCGTTTTT-AGGGAAGCACTGCTAATGCTCAG
1 GGCTTTAGCGGCGTTTTTGA-GGAAGCGCCGCTAATGCTCAG
* * *
16895032 GGCTTTAGCGGCATTTTTGGGGAAGCGCCGCTAATGCTCGG
1 GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
* * * * * *
16895073 GGCTTTAGCGGCATTTCTGGGGAAGCGTCGCTAATTCTTAG
1 GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
* *
16895114 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGAAT-AG
1 GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATG-CTCAG
* * **
16895155 GGATTTAGCGGTGTTTTT-AGGAAGCGCCGCTAATGAACAG
1 GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
* * ** *
16895195 GGATTTAGCGACGTTTTTGAAAAAGCACCGCTAATGCT
1 GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCT
16895233 TTACTTTTAG
Statistics
Matches: 169, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 34 0.20
41 133 0.79
42 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (41 bp):
GGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAG
Found at i:16896263 original size:14 final size:14
Alignment explanation
Indices: 16896246--16896356 Score: 71
Period size: 14 Copynumber: 7.9 Consensus size: 14
16896236 GGATTATGAA
*
16896246 TTAAGGTTTATGGT
1 TTAAGGTTTAGGGT
** *
16896260 TTAAGGGGTGGGGT
1 TTAAGGTTTAGGGT
*
16896274 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGT
* *
16896288 TTAGGGGTTAGGGGT
1 TTAAGGTTTA-GGGT
* *
16896303 TTAGGGTTTATGG-
1 TTAAGGTTTAGGGT
*
16896316 TTAGGGGTTTAGGGT
1 TTA-AGGTTTAGGGT
* * * *
16896331 TTATGTTTTATGAT
1 TTAAGGTTTAGGGT
16896345 TTAAGGTTTAGG
1 TTAAGGTTTAGG
16896357 AGAAGGGTTA
Statistics
Matches: 73, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
13 3 0.04
14 55 0.75
15 15 0.21
ACGTcount: A:0.18, C:0.00, G:0.40, T:0.42
Consensus pattern (14 bp):
TTAAGGTTTAGGGT
Found at i:16896276 original size:21 final size:20
Alignment explanation
Indices: 16896250--16896288 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
16896240 TATGAATTAA
*
16896250 GGTTTATGGTTTAAGGGGTGG
1 GGTTTAAGGTTT-AGGGGTGG
16896271 GGTTTAAGGTTTAGGGGT
1 GGTTTAAGGTTTAGGGGT
16896289 TAGGGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38
Consensus pattern (20 bp):
GGTTTAAGGTTTAGGGGTGG
Found at i:16896330 original size:7 final size:7
Alignment explanation
Indices: 16896270--16896382 Score: 72
Period size: 7 Copynumber: 16.1 Consensus size: 7
16896260 TTAAGGGGTG
16896270 GGGTTTA
1 GGGTTTA
*
16896277 AGGTTTA
1 GGGTTTA
*
16896284 GGGGTTA
1 GGGTTTA
*
16896291 GGGGTTA
1 GGGTTTA
16896298 GGGGTTTA
1 -GGGTTTA
16896306 GGGTTTA
1 GGGTTTA
*
16896313 TGG-TTA
1 GGGTTTA
16896319 GGGGTTTA
1 -GGGTTTA
16896327 GGGTTTA
1 GGGTTTA
* *
16896334 TGTTTTA
1 GGGTTTA
* *
16896341 TGATTTA
1 GGGTTTA
*
16896348 AGGTTTA
1 GGGTTTA
*
16896355 GGAG--AA
1 GG-GTTTA
16896361 GGG-TTA
1 GGGTTTA
16896367 GGGGTTTA
1 -GGGTTTA
16896375 GGGTTTA
1 GGGTTTA
16896382 G
1 G
16896383 ATAAATTAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
5 1 0.01
6 7 0.08
7 64 0.75
8 13 0.15
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:16900942 original size:43 final size:43
Alignment explanation
Indices: 16900870--16900998 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
16900860 TTAAAATTTT
* *
16900870 TCATGACCTTTAACGGCGTTTTTGGGGAAAGTC-TCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTTTGGGGAAAG-CGTCGCTAAAGG
* * * *
16900913 TCTTGTTCTTTAGCGGCATTTTTGAGGAAAGCGTCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGG
16900956 TCATGATCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGG
16900999 CCTAAAAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 74 0.99
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
TCATGATCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGG
Found at i:16903515 original size:14 final size:14
Alignment explanation
Indices: 16903492--16903532 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
16903482 GTGGTCCAAT
16903492 TGAACTGAACCGAG
1 TGAACTGAACCGAG
*
16903506 TGAACCGAACCGAG
1 TGAACTGAACCGAG
16903520 TGAACTGAACCGA
1 TGAACTGAACCGA
16903533 CCAAGAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.27, T:0.12
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:16904098 original size:2 final size:2
Alignment explanation
Indices: 16904091--16904122 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
16904081 TATGCTAAAC
16904091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16904123 GAATGTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16909189 original size:703 final size:703
Alignment explanation
Indices: 16907226--16915147 Score: 8653
Period size: 703 Copynumber: 11.3 Consensus size: 703
16907216 ACACGGAATA
* * **
16907226 AAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACATGGAATAGAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * * * *
16907291 GGCTACCTGGGAATCGGAAGAAGCTATGAAAGTGCAATACTTGAAGTTATTTTCTGGTAAGGTTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * * ** ** * * *
16907356 TTGGGGATGAAATTTCCTTTAGGGTAAGAGTTGTAACAACTTATTTTCAATGAAAT-AGAGACAG
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCA-AAACAG
** ** * * * **
16907420 TGGTTTCGATACCTTAAATTTGACAAAGCTTTGTATGGTCGAAAGTGTCGAATTCTGTTATACTG
195 TGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTG
* * * * * * *
16907485 GACAGAGTTGAGCGAGAAAAAAGTTATTTGGTGTTGATTTGACTCGAGAAACCAAAGAAAAGGTC
260 AACAGAGCTGAGCGAG-AAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTC
* * * * * *
16907550 AAAATGATACGTGATAGCTTGAAACCAGGTTTGGATCAACA-AAAACTTACGCTGATTTG-AAA-
324 AAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAG
16907612 AAAA-A-ATTGAATTTCAAGTCA-GCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTT
389 AAAAGATATTGAATTTCAAGT-AGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTT
* * *** * * * *
16907674 ATTTGATTTGGGCAAAACTAAAAGCTTAGTTTGTGGTTTATCGGGCCATTTAAGATCATTTAGAG
453 -CTTGATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAGAG
* ** *
16907739 AATTGGGTCAGTAGCTTATCA-TTAGC-TTCACTATCAGAGTTAGAAAAGATTAATAATGTATTC
517 AATTGGGCCAGTAGCTTATCAGTTAGCTTTGTC-ATCAGAGTTAGAAAAGATTCATAATGTATTC
* * * * *
16907802 CACGTATCGATGTTACGATGGTATCGATCAGATCCTTCAGATGTAATATCCCCAATTGATGTGGA
581 CACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGA
* * * *
16907867 AATTCAACCTGATATGACATACAGTGACA-AACCGATCAGAATTCTTGCACGAGAAGTT
646 AATTCAACCTGATATGACGTACAGTGA-AGAACCGATCAGAATTCTAGCTCGGGAAGTT
* *
16907925 AAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGCAATGACA-AGGAATAGAAG
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACA-GAATAGAAG
* * *
16907989 AGGCTGCGTGGAAACC-GAAAGAAGCTATGAAAGTGCAATACTTGAACATATTTTCTGGTAAGAT
65 AGGCTGCCTGGGAACCAG-AAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGA-
** * * *
16908053 TTTTTA-GGACGAAAATT-CTTTAGGGGGAGTTTTGTAACAACCCCTTTTCAGTGAAATCAAAAT
128 TTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAAC
* * * ** *
16908116 AATGGTTTTGAGACCACAAATCCAACGAAGCTTTGTATGGTCAAAAGTGTAGAATTCCATTATAC
193 AGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATAC
* * * * *
16908181 T-AGATAGAGCTGAGCAAGAAAAAGTTATTCAGTATTGATTTGATTTGAGAAATCGAAGAAAATG
258 TGA-ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATG
* * ** * * * *
16908245 TCAAAATGAAACGTGATAGCTTGAAAGCAGCAATGGATCGACATAAATTTTATGCAAATTTGAAA
322 TCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAA
* * *
16908310 AGAAAAGATATTGAATTTCAAGTCGGTGACACAATATTTCTGAAAGTATTGCCTTGGAAGAAAGT
387 AGAAAAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGT
* * * * *
16908375 ACATTGATTTGGCCGAAAAA--AAAGCTTAATCCGA-GGTTTATCGAGCCATTTGAGATTATTGA
452 TC-TTGATTTGGCC-AAAAAGGAAAGCTTAGT-CTATGGTTTATCGGGCCATTTGAGATCATTGA
* * * *
16908437 GAGAATTGGGTCAGTAGCTTATCAGTTAGCTTTGCCATCGGAGTTAGAAAATATTCATAATGTAT
514 GAGAATTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTAT
* * * *
16908502 TCCACGTATCGATGTTACAATGGTGTTGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTT
579 TCCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTT
* * * *
16908567 GAAATTTAACTTGATATGACGTACAGTGAAGAACCGATCAAAATTCTAGCTCGGGTAGTT
644 GAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * *
16908627 AATGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTAGTAACGACACAGAATAGAATA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * * ** *
16908692 GACTTCCTGGGAACCAGAATAAAATATGAAAGTGCAATACTTGAACTTATTTTATGGTAAGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * * *
16908757 TCAGGGATGAAAATTCCTTTAGGGGGAGAGTTGTAATAGCCCATTTTCAGTGAAGTCAAAACAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* * * * *
16908822 GGTTTCGGGACCATAAATTTGACGAAGCTTTGTATGGTCAAAAGTTTCGAATTCCGTTATACTCA
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * * * * * *
16908887 ATAGTGCTGAGTGTGAAAAAGTTATTCGATGTTGATTTGATTTGAGAAACTGATGAAAATGTCAA
261 ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCAA
*** * * * *
16908952 AGTGATACGTGATAGCTTGAAAATGGCTTTGGATCAATAGAAATCTTATGCAGATTTGAAACGAA
326 AGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAA
* * * * * * *
16909017 AATATATTAAATTCCAAGTAGGCGACACAGTGTTTCTAAAATTATTACCTTGGAAGAAAGTTCTT
391 AAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTT
* * ** * * * * *
16909082 CAATGTACCCAAAAAGGAAAGCTTAGCCCT-TGGTTTATCAGGCCTTTTGAGATTATTGAAAGAA
456 -GATTTGGCCAAAAAGGAAAGCTTAG-TCTATGGTTTATCGGGCCATTTGAGATCATTGAGAGAA
* *
16909146 -TGGGCCAGTAGATTATCAGTTAGCTTTGTCATTAGAGTTAGAAAAGATTCATAATGTATTCCAC
519 TTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCAC
* * * * * * *
16909210 GTCTCGATGTTGCGACGGTATCGATCAGATTCTTCACTCATAATATCCCTAGTTTATGCTT-AAA
584 GTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATG-TTGAAA
* *
16909274 TTCAACCTGATATGATGTACTGTGAAGAACCGATCAGAATTCTAGCTC-GG--G--
648 TTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
*
16909325 -AAG---T------T-AAA--A-AA--TT-G--AAA---AT-T---AA--A-A-AG---AGAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * * * *
16909357 GGTTTCTTGGGAACTAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATCTTCTGGTAAGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * * * * *
16909422 TTAGTGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAATGAAGTTAGAATAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* * * * * * ** * *
16909487 GGCTTCGAGTCCACAAATCTAACAAATCTTTGTATGGTTGAAAGTGTCGAATTCCATTTTACTGG
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * *
16909552 ACAGATG-TGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCAAACAAAAGGTCA
261 ACAGA-GCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCA
* **
16909616 AAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACATAGATTTGAAAAGA
325 AAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGA
* * * * * **
16909681 AAAGATATTGAATTTCAAGTCGGCAACACAGAATTTCTAAAATTATTGCCTTCAAAGAAAGTTCA
390 AAAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTC-
** * * * * *
16909746 TTGATTTGGCTGAAAAGGAAAGCTTAGTCTCTGGTTTATTGGGCCGTTTGAGATCATTAAGTGAA
454 TTGATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAGAGAA
* * * *
16909811 TTGGGCTAGTAGCTTAACGGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCTAC
519 TTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCAC
* * * **
16909876 GTATCAATGTTACAACGGTATCGATCAGATCCTTCACAAGTAATATCCCTTGTTGATGTTGAAAT
584 GTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGAAAT
* * * *
16909941 TCAACTTGATATGACGTACAGTGAAAAACCGATCAAAATTCTAGCTCGGGTAGTT
649 TCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * * *
16909996 AAAAAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTTTTTGGTAATGACACAGAATAGAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
*** * *
16910061 GGCTATTTGGGAACTAGAAGAAGCTATGAAAGTGTAATACTTGAACTTATTTTCTGGT-AGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * * * *
16910125 TTAGGGACAAAAATTACTTTAGGGGGAAAGTTGTAACAACCCGTTTTCAGTGAAGTCAAAACAAT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* * * * **
16910190 GGTTTCGGGACTACAAATCTGATGAAGCTTTTTATGGTAAAAAGTGTTAAATTCCATTATACT-A
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * * ** * **
16910254 GATAGAGTTGAGTGAGAAAAAGTTATTAAGTATTGATTTGATTTGAGAAATTGAAGAAAATGTCA
261 -ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCA
* * * * * * *
16910319 AAGTGATACGTGATAGCTTGAAAACTGCTTTGGATCGATAGAAATCTTTCACAAATTTGAGAAGA
325 AAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGA
* ** * * * * * * *
16910384 AAAGATACTGAATTTTGAGTCA-GCAACACAATATTTTTCAAATTATTTCCATGGAAGAAAGTTC
390 AAAGATATTGAATTTCAAGT-AGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTC
* * * * *
16910448 TTTGATTTGGTCGAAAAGGAAAGCTTAGTCCATCCGTGGTTTATTGGGCCATTCGAGATCATTGA
454 -TTGATTTGGCCAAAAAGGAAAGCTTAGT-C-T--ATGGTTTATCGGGCCATTTGAGATCATTGA
* * * * *
16910513 GAGAATTGAGCCAGTAGCTTATCAGTTAGGTTT-TCCGTTAGAGTTAGGAAAGATTCATAATGTA
514 GAGAATTGGGCCAGTAGCTTATCAGTTAGCTTTGT-CATCAGAGTTAGAAAAGATTCATAATGTA
* * * * * * *
16910577 TTCTACGCATCGATGTTACGACGGTATTGATTAGAACCTTCACACGTAATATCCCCAATTGGTGT
578 TTCCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGT
* * * * *
16910642 TGAAATTCAACCTAAAATGACGTACACTGAAGAACCGATCAAAAGTCTAGCTCGGGAAGTT
643 TGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * * * * * *
16910703 AAGGCATTGAGAAATAAAAGTATAGCTTTAGTTTATAGTTCTTTGGCAATGACACATAATAGAAA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAG-TTAAAGTTCTCTGGCAACGACACAGAATAGAAG
* * ** * * *
16910768 AGGCTACCTGGAAACTGGAATAAGCTATAAAAGTGCAATACTTGAACTTATTTTCTAGTAAGA-T
65 AGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATT
* * * * * * ** *
16910832 TGTCGGGAACGAAAATTCTTTTAGGAGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCGGAATA
130 TTTAGGG-ACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACA
* * * * * * ** *
16910897 GTTGTTTCAGGAACACATATCTGACGAATCTTTGTA-GCATCAACAA-TGTCGAATTCTGTTAGA
194 GTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATG-GTCAA-AAGTGTCGAATTCCATTATA
*
16910960 CTAGAA-AGAGCTGAGCGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACCGAAGAAAA-
257 CT-GAACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAAT
* * * * *
16911023 GTGCAAAGTGATACGTGATAGCTTGAAAGCAACCTTGGATCGATAGAAATCTTTCACAGATTTGA
321 GT-CAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGA
* * *
16911088 AAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCAGAAAGTATTGCCTTGGAAGAAA
385 AAAGAAAAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
* * * * *
16911153 GTTCTTCGATTTGGCCAAAATGGAAAGCTTAGTATGTGGTTTATCGGGCTATTTGAGGTCATTGA
450 GTTCTT-GATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGA
*** * * * *
16911218 GAGAATTGGAATAGTAGCTTAAT-GGTTAGCTTTGTCGTAAGAGGTAGAAAAGATTCATAATGTA
514 GAGAATTGGGCCAGTAGCTT-ATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTA
* * * * ** * * *
16911282 TTCTATGTATCAATGTTACAACAATATCAATTAGATCCTTCACATGTAATATCCCCAGTTGATGT
578 TTCCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGT
* * * *
16911347 TGACATTCAACCTGATATGACGTACAGTGAAGAATCGATCAGAATTGTAGCTCGAGAAGTT
643 TGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * * **
16911408 AAAGAATTGAGAAATAAAAGTAT-ACTTTAGTTAAAGTTCTCTGGTAATGACACGGGATAGATTA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * * * *
16911472 GGCTGCCTAGGAACCAGAATAAGCTATGAAAGTACAATACTTGAACTTATTTTTTGGGAAGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * * * * **
16911537 TT-GGGATGAAAATTCCTTTAAGGAGAGAGTTGTAACAGCCCATTTTTAGTGAAGTCGGAACAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* ** * *
16911601 GGTTTCAGGACCACAAATCTGACGAAGCTTTGTATGGTTGAAAGTGTCGAATTCCGTTATACTAA
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * * * * *
16911666 ACAAAGCTGCGCGAGAAAATGTTATTCGGTGTTGATTTTATTTGACAAACCGAAGAAAAGGTCAA
261 ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCAA
* * * * *
16911731 AGTCATACTTGATAGCTTGAAAGCAGCTTTGGATCAACAAAAATCTTACGCAGATTTGAAAAGAG
326 AGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAA
** * * * *
16911796 AAGATATTGAATTTTGAGTTGGCGACACAGTATTTCTGAATGTATTTCCTTGGAAAAAAGTTCGT
391 AAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTC-T
* * *
16911861 TGATTTGGCCGAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCGTTTGAGATCATTTAGAGAAT
455 TGATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAGAGAAT
* *
16911926 TGGGCTAGTAGCTTATCTGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCACG
520 TGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCACG
* * * *
16911991 TATTGATATTACGACGGTATCGATCAGATCCTTCACATGTAATATCCCCAGTTGATGTTGACATT
585 TATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGAAATT
* * * * * ** *
16912056 CTACTTGATATGACGTACAGTGAAGAACTGATTAAAATTCTAGCTCATGAAGCT
650 CAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * *
16912110 AAAGAATTAAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGAAACGACA-AGGAGTAGAAG
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACA-GAATAGAAG
* * * * * *
16912174 AGGCTGCCTTGTAGCCGGAAGAAGCTATGAAAGTGCAA-ACTTGAACTTTTTTTCTTGTAAGATT
65 AGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATT
* * * * ** *
16912238 TTCAGGGACAAAAATT-CTTGTAGGAGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCGGAA-T
130 TTTAGGGACGAAAATTCCTT-TAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACA
* * * *
16912301 GCTGGTTTCGGGACCACAAATTTGAGGAAGCTTTGTATGGTCGAAAGTGTCGAATTCTATTATAC
194 G-TGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATAC
* * * * *
16912366 TGGAA-AGAG-TGTAGCGAGAAAAATTTTTTCGGTGTTGATTTTATTTGAGAAACCAAAGAAAAG
258 T-GAACAGAGCTG-AGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAAT
* * * * * *
16912429 GTCAAAGTGATACGTGATTGCTTGAAAGAAACTTTGGATCGACAAAAATATTACACAGATTTGAA
321 GTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAA
* * * * * *
16912494 AATAAAAGATATTGAATTTCAAGTCGGCGACATAATATATCTAAAAGTATTGCCTTGGAAGAAAG
386 AAGAAAAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAG
* * ** *
16912559 TTATGTGATTTGGCCAAAAAGGAAAGCTGAGTCTATGGTTTATTAGGCCGTTTGAGATCATTGAG
451 TTCT-TGATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAG
* ** * * *
16912624 GGAATTGGGCCAACAGCTTATCAGTTAGCTTTGCCGTTAGAGTTAGAAAAGATTCATAATGTATT
515 AGAATTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATT
* * * *
16912689 TCACGTATCGATGTTACGATGGTACCGATCAGATCCTTCACACGTAATATCCCTAGTTGATGTTG
580 CCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTG
* * * * * * * * *
16912754 AAATTTATCCTAATATAACGTAAAGTGAAGAACTGGTCAGAATTTTAGCTCAGGAAGTT
645 AAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * * **
16912813 AAAGAATTAAGGAATAAAAATATAGCTTTAGTTAAAGTTCTCTGGCAATC-ACATGGAATAGAAG
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAA-CGACACAGAATAGAAG
* * *
16912877 AGGCTGCCTGGGACCCAGAAGTAA-CTATGAAACTGCAATACTTGAACTTATTTTCTAGTAAGAT
65 AGGCTGCCTGGGAACCAGAAG-AAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGAT
* ** * * * * * * ** *
16912941 TTTTGGGGACGAAAATTATTTTAGGGGAAAAGTTTTAACAACCCATTTTAAGAGAAATTGAAATA
129 TTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACA
** * * * *
16913006 GTGGTTTCAAGACCACATAT-TCGACGAAGATTTGTATGGTCGAAAGTGTCGAATTCGATTATAC
194 GTGGTTTCGGGACCACAAATCT-GACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATAC
* * * * * * *
16913070 TGGACAGAGCTGAGTGAGAAAAAGTTATTCAGTGTTGATTTGATGTAAGAAACCTAA-TAAATGG
258 TGAACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAAT-G
* * * * *
16913134 TCAAAGTGATACGTGAGAGCTT-AAATGCAGCTTTGGATCAAAAGAAATATTATGCAGATTTGAA
322 TCAAAGTGATACGTGATAGCTTGAAA-GCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAA
* *
16913198 AAGAAAAGATATTGAATTTCAAGTCA-ACAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
386 AAGAAAAGATATTGAATTTCAAGT-AGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
** * ** * *
16913262 GTTCTTCGATTTGGCGGAAAAGGAAAGCTTAGTCTCTGGTTTATTAGGCCGTTTGAGATCATTGT
450 GTTCTT-GATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGA
* * * * *
16913327 GAAAATTGGGCCAGTAGCTTATCGGTTAGCTTTGCCGTCAGATTTAGAAAAGATTCATAATGTAT
514 GAGAATTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTAT
* * * *
16913392 TCCACATATCGATGTTAC-ACGGTACCAATTAGATCCTTCACACGTAATATCCCCAGTTGATGTT
579 TCCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTT
* *
16913456 GAAATTCAACCAGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGAAAGTT
644 GAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * *
16913516 AAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAATACAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * * * * * *
16913581 GGCTTCCTAGGAACCAGAAGAAGCTATAAAAGTCCAATACTTGAATTTATTTTCTAGTACGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * ** **
16913646 TCAGGGATGAAAATTCCTTTAGGGGGAGAGTTGTAACAACTGATTTTCAGTGAAGTCGGAACAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* * * * * *
16913711 GGTTTTGAGACCACAAATCTGATGAAGCTTGGTATGGTCAAAAGTGTCGAATTCCATTATAATGG
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * * ** * *
16913776 ATAGAGCTAAGTGAGAAAAAGTTATTCAATATTGATTTGATTTAAGAAACCGAAGAAAATGTCAA
261 ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCAA
* *
16913841 AGTAATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTCCGC-GTATTTGAAAAGA
326 AGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAG-ATTTGAAAAGA
** ** * * *
16913905 AAAGATATTGAATTTCTTGTCA-GTAACACAATATTTGTGAAAGTATTTCCTTGGAAGAAAGTTC
390 AAAGATATTGAATTTCAAGT-AGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTC
** * *
16913969 TTTGATTTGGCTGAAAAGGAAAGCTTAGTCCGTCCGTGGTTTATTGGGCCATTTGAGATCATTGA
454 -TTGATTTGGCCAAAAAGGAAAGCTTAGT-C-T--ATGGTTTATCGGGCCATTTGAGATCATTGA
* * * *
16914034 GAGAATTGGGCTAGTAGCTTATCGGTTAGGTTT-TCCATTAGAGTTAGAAAAGATTCATAATGTA
514 GAGAATTGGGCCAGTAGCTTATCAGTTAGCTTTGT-CATCAGAGTTAGAAAAGATTCATAATGTA
* * * * *
16914098 TTTCACGTATCGATGTTACGACGATACCAATCAGATCCTTCACACATAATATCCCCAGTTGATGT
578 TTCCACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGT
* * *
16914163 TGAAATTCAACCTAATATGACTTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTT
643 TGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
** *
16914224 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCGATGGCAACGACACAGAATACAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
* * *
16914289 GGCTGCCTGGGAACCAGAAGAAGCGATGAAAGTGGAATACTTGAATTTATTTTCTGGTAAGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
* * ** ** * * *
16914354 TTAGGAACAAAAATTCCTTTAGGGGGAGAGTTGTAACAGTCGGTTTTCAATAAAGTCAGAACAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
* *
16914419 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACGGG
196 GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
* * * * * *
16914484 ACAAAGTTGAACGACAAAAGGTTATTCGGTGGTGATTTGATTTGAGAAACCGAAGAAAA-GTTCA
261 ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATG-TCA
* * * *
16914548 AAGTGATACGTGATAGCTTGAAAGCAGCTTTGGACCAACAGGAATCTTACGCAGATTTGAAAACA
325 AAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGA
* * * *
16914613 AAAGATATTGAATTTCAAGTCGGTGACACAGTATTTCTGAACGTATTACCTTGGAAGAAAGTTCT
390 AAAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCT
* * *** *
16914678 TCGATTTGGCCGAAAAA-GAAAGCTTAGTCCATCGTTTATCGGGTTGTTTGAGATCATTGAGATA
455 T-GATTTGGCC-AAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAGAGA
* * * * *
16914742 ATTGGGCTAGTAGCTTATCAGTTAGCTTTGACGTCGGAGTTAGAAAAGATTCATATTGTATTCCA
518 ATTGGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCA
* * ** * *
16914807 CGTATCAATGTTATGACAATATTGATCAGATCCTTCACACGTAATATCACCAGTTGATGTTGAAA
583 CGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGAAA
* * * * * * *
16914872 TTCAACCTGACATGACGTACAATGTAGAACTGGTCAGAAATCTAGCTCGAGAAGTT
648 TTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
* * * * *
16914928 AAAGAATTTAGAAATAAAAGTATAACTTTAGTCAAAGTTCTTTGGCAACAACACGGAATAGAAGA
1 AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
** * *
16914993 GGCTGCCTGGGAACTGGAAGAAGCTATGAAAGTTCAATACTTGAACTTATTTTTTGGTAAGATTT
66 GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
** * * * * * * * *
16915058 TCGGGGATGAAAATTCCTTTAGGGGGAGAGTTGTAATAGCCCGTTTTTAGTGAAATTAAAATAGT
131 TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
*
16915123 GGTTTCGGGACCACAAGTCTGACGA
196 GGTTTCGGGACCACAAATCTGACGA
16915148 GTAAATTTTA
Statistics
Matches: 6100, Mismatches: 985, Indels: 271
0.83 0.13 0.04
Matches are distributed among these distances:
664 2 0.00
665 377 0.06
666 155 0.03
667 2 0.00
668 2 0.00
669 2 0.00
670 1 0.00
672 4 0.00
675 2 0.00
676 1 0.00
679 3 0.00
681 2 0.00
682 5 0.00
684 3 0.00
685 3 0.00
687 5 0.00
688 2 0.00
690 3 0.00
693 1 0.00
694 2 0.00
697 79 0.01
698 113 0.02
699 130 0.02
700 11 0.00
701 72 0.01
702 861 0.14
703 1929 0.32
704 908 0.15
705 209 0.03
706 4 0.00
707 318 0.05
708 599 0.10
709 286 0.05
710 3 0.00
711 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (703 bp):
AAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCTCTGGCAACGACACAGAATAGAAGA
GGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTAAGATTT
TTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAACCCATTTTCAGTGAAGTCAAAACAGT
GGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATTATACTGA
ACAGAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAATGTCAA
AGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTACGCAGATTTGAAAAGAA
AAGATATTGAATTTCAAGTAGGCGACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAAGTTCTT
GATTTGGCCAAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCATTTGAGATCATTGAGAGAATT
GGGCCAGTAGCTTATCAGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTATTCCACGT
ATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGAAATTC
AACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGGGAAGTT
Found at i:16915973 original size:17 final size:17
Alignment explanation
Indices: 16915953--16915990 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
16915943 GGCAAAATGA
16915953 GAATTTTGCA-TAAATAT
1 GAATTTTGCACTAAAT-T
*
16915970 GAATTTTGGACTAAATT
1 GAATTTTGCACTAAATT
16915987 GAAT
1 GAAT
16915991 ACTAGAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (17 bp):
GAATTTTGCACTAAATT
Found at i:16917667 original size:16 final size:16
Alignment explanation
Indices: 16917648--16917678 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16917638 ATATTAATTT
*
16917648 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
16917664 TATTTAATATTAAAA
1 TATTTAATATTAAAA
16917679 CTACAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:16924118 original size:50 final size:50
Alignment explanation
Indices: 16924045--16924240 Score: 221
Period size: 50 Copynumber: 3.8 Consensus size: 50
16924035 TCTTGTACTA
* * **
16924045 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* ** *
16924095 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* * * *
16924145 CCAACGCCATGTCCCAGACATAGTCTTACATGAGACCTCTCATAACCTCAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTG
*
16924201 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
16924241 TTACCCAAAT
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.66
53 2 0.02
56 39 0.32
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:16924772 original size:17 final size:17
Alignment explanation
Indices: 16924750--16924788 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
16924740 CATTAGGTAT
16924750 TTTACCGATTATGTCAA
1 TTTACCGATTATGTCAA
16924767 TTTACCGATTATGTCAA
1 TTTACCGATTATGTCAA
16924784 TTTAC
1 TTTAC
16924789 TCGTTTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (17 bp):
TTTACCGATTATGTCAA
Found at i:16931270 original size:16 final size:16
Alignment explanation
Indices: 16931251--16931298 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
16931241 TTTATGTTTT
16931251 CTTATTTTTAACTTTA
1 CTTATTTTTAACTTTA
*
16931267 CTTATTTTCTTTACTTTA
1 CTTA-TTT-TTAACTTTA
16931285 -TTATTATTTAACTT
1 CTTATT-TTTAACTT
16931299 ATAAAATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 12 0.44
17 7 0.26
18 8 0.30
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTATTTTTAACTTTA
Found at i:16932273 original size:17 final size:17
Alignment explanation
Indices: 16932248--16932280 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16932238 TTAATAGGAC
*
16932248 TATTTATGAATTTAATG
1 TATTAATGAATTTAATG
16932265 TATTAATGAATTTAAT
1 TATTAATGAATTTAAT
16932281 TTTCAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
TATTAATGAATTTAATG
Found at i:16936228 original size:16 final size:17
Alignment explanation
Indices: 16936207--16936242 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
16936197 GATGATCAAA
16936207 TACAAA-CTTCAAACGG
1 TACAAAGCTTCAAACGG
16936223 TACAAAGCTTCAAACGG
1 TACAAAGCTTCAAACGG
16936240 TAC
1 TAC
16936243 CATTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.42, C:0.25, G:0.14, T:0.19
Consensus pattern (17 bp):
TACAAAGCTTCAAACGG
Found at i:16938570 original size:27 final size:27
Alignment explanation
Indices: 16938540--16938717 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
16938530 ATATTGAGTC
* * * *
16938540 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16938567 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16938594 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16938622 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16938649 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16938676 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16938703 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16938718 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16938679 original size:82 final size:81
Alignment explanation
Indices: 16938561--16938716 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
16938551 TGCTATATAA
* *
16938561 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16938626 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16938643 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16938707 CACTTAGTGC
65 CACTTAGTGC
16938717 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16939218 original size:12 final size:12
Alignment explanation
Indices: 16939201--16939227 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
16939191 ATGGCATACT
16939201 TATGTATATATA
1 TATGTATATATA
16939213 TATGTATATATA
1 TATGTATATATA
16939225 TAT
1 TAT
16939228 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:16944176 original size:40 final size:40
Alignment explanation
Indices: 16944120--16944380 Score: 193
Period size: 40 Copynumber: 6.5 Consensus size: 40
16944110 GAGCATAAAT
* * * * *
16944120 AGGGGCACGAAAGTGCATTTAGGGGTACCAAAGTATAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * **
16944160 AGGGGCACGTATGTGCAATCAGCGATAATGAAA-TACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGT-ACCAAAGTACAAAC
* * * *
16944200 AGAGGCACGTGTGAGCAATCAAGGGTACCAAAGTACAGAA-
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACA-AAC
* * * * *
16944240 AGGGGAACATATGTGCAATCAAGGGTACCAAAGTACCAAT
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * * ** *
16944280 AGGGGTACGTATGTGTAGTCAGGGGTACTGAAGTGCAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * ** * *
16944320 AAGGGCACGTATGTGGAATCAGTTGTACCGAAGTACAAAG
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * *
16944360 AGGGGCATGTTTGTCCAATCA
1 AGGGGCACGTATGTGCAATCA
16944381 TACAATAATT
Statistics
Matches: 170, Mismatches: 47, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
39 6 0.04
40 158 0.93
41 6 0.04
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.19
Consensus pattern (40 bp):
AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
Found at i:16952639 original size:27 final size:26
Alignment explanation
Indices: 16952620--16953137 Score: 473
Period size: 27 Copynumber: 19.3 Consensus size: 26
16952610 GGGTATAATA
*
16952620 GTCATTTAACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* * **
16952647 TTCATTTTAACCTACAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTA-TTTG
*
16952674 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* *
16952701 GTCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTA-TTTG
* * *
16952728 GTCATTTTATCTTTTGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTA-TTTG
*
16952755 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* *
16952782 ATCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* *
16952809 TTCATTTTACCCTATGGAGGTATTTG
1 GTCATTTTACCCTATGGGGGTATTTG
* *
16952835 AGTCATTCTATCCTATGGGGGTATTTCG
1 -GTCATTTTACCCTATGGGGGTATTT-G
*
16952863 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* * *
16952890 ATCATTTTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTA-TTTG
* *
16952917 GTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTT-G
* * *
16952944 ATCATTCTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* * *
16952971 GTCATTTTACTCTATTGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* * * *
16952998 ATCATTTTATCCTATAGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
* * * *
16953025 ATCATTTTACCCTATAGGAGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTT-G
* *
16953052 GTCATTTTACCTTATGGGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
*
16953079 GTCATTCTACCCTAT-GGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTA-TTTG
*
16953105 GTCATTTTATCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTT-G
16953131 GTCATTT
1 GTCATTT
16953138 ACCTATTTTG
Statistics
Matches: 419, Mismatches: 62, Indels: 21
0.83 0.12 0.04
Matches are distributed among these distances:
25 3 0.01
26 43 0.10
27 363 0.87
28 10 0.02
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGGTATTTG
Found at i:16952686 original size:54 final size:53
Alignment explanation
Indices: 16952620--16953137 Score: 581
Period size: 54 Copynumber: 9.6 Consensus size: 53
16952610 GGGTATAATA
* * * * *
16952620 GTCATTTAACCCTATGGGGGTATTTCGTTCATTTTAACCTACAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCG
* * *
16952674 GTTATTTTACCCTATGGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCG
* * * *
16952728 GTCATTTTATCTTTTGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCG
* * *
16952782 ATCATTTTACCCTATGAGGGTATTTCGTTCATTTTACCCTATGGAGGTATTT-G
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGG-GGTATTTCG
* * *
16952835 AGTCATTCTATCCTATGGGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCG
1 -GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCG
* * ** *
16952890 ATCATTTTACCCTATGAGGGTATTTTAGTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCG
* * * * *
16952944 ATCATTCTACTCTATGGGGGTATTTCGGTCATTTTACTCTATTGGGTTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCG
* * * * * * *
16952998 ATCATTTTATCCTATAGGGTTATTTCGATCATTTTACCCTATAGGAGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCG
* * * *
16953052 GTCATTTTACCTTATGGGAGTATTTCGGTCATTCTACCCTATGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCG
*
16953105 GTCATTTTATCCTAT-GGGGTATTTCGGTCATTT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTT
16953138 ACCTATTTTG
Statistics
Matches: 388, Mismatches: 67, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
52 16 0.04
53 26 0.07
54 341 0.88
55 5 0.01
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (53 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCG
Found at i:16952733 original size:81 final size:80
Alignment explanation
Indices: 16952620--16953137 Score: 560
Period size: 81 Copynumber: 6.4 Consensus size: 80
16952610 GGGTATAATA
* * * *
16952620 GTCATTTAACCCTATGGGGGTATTTCGTTCATTTTAACCTACAGGGGTATTTTGGTTATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACCTA-TGGGGTATTTTGGTCATTTTACC
16952685 CTATGGGGGTATTTCG
65 CTATGGGGGTATTTCG
* * * * * *
16952701 GTCATTTTACCTTATAGGGGTATTTTGGTCATTTTATCTTTTGGGGGTATTTTGGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACCTAT-GGGGTATTTTGGTCATTTTACC
*
16952766 CTATGAGGGTATTTCG
65 CTATGGGGGTATTTCG
* * * * * *
16952782 ATCATTTTACCCTATGAGGGTATTTCGTTCATTTTACCCTATGGAGGTA-TTTGAGTCATTCTAT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACCTATGG-GGTATTTTG-GTCATTTTAC
16952846 CCTATGGGGGTATTTCG
64 CCTATGGGGGTATTTCG
* * * *
16952863 GTTATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGAGGGTATTTTAGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACCTATG-GGGTATTTTGGTCATTTTACC
* *
16952928 CTATGAGGGTATTTCA
65 CTATGGGGGTATTTCG
* * * * * * *
16952944 ATCATTCTACTCTATGGGGGTATTTCGGTCATTTT-ACTCTATTGGGTTATTTCGATCATTTTAT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAAC-CTA-TGGGGTATTTTGGTCATTTTAC
* *
16953008 CCTATAGGGTTATTTCG
64 CCTATGGGGGTATTTCG
* * * * * *
16953025 ATCATTTTACCCTATAGGAGTATTTCAGTCATTTT-ACCTTATGGGAGTATTTCGGTCATTCTAC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACC-TATGGG-GTATTTTGGTCATTTTAC
*
16953089 CCTAT-GGGGTATTTTG
64 CCTATGGGGGTATTTCG
*
16953105 GTCATTTTATCCTAT-GGGGTATTTCGGTCATTT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTT
16953138 ACCTATTTTG
Statistics
Matches: 366, Mismatches: 62, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
79 16 0.04
80 34 0.09
81 310 0.85
82 6 0.02
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTAACCTATGGGGTATTTTGGTCATTTTACCC
TATGGGGGTATTTCG
Found at i:16956501 original size:39 final size:39
Alignment explanation
Indices: 16956458--16956549 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
16956448 TAGAAAACTA
*
16956458 TTGTACTTCGGTACCCCTGATCACACTTACGTGCCCCAG
1 TTGTACTTCAGTACCCCTGATCACACTTACGTGCCCCAG
* * * *
16956497 TTGTACTTCAATACCCGTGATCGCACTTACGTGCCCCTG
1 TTGTACTTCAGTACCCCTGATCACACTTACGTGCCCCAG
16956536 TTGTACTTCAGTAC
1 TTGTACTTCAGTAC
16956550 TCCTAATAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (39 bp):
TTGTACTTCAGTACCCCTGATCACACTTACGTGCCCCAG
Found at i:16956562 original size:39 final size:38
Alignment explanation
Indices: 16956458--16956570 Score: 129
Period size: 39 Copynumber: 2.9 Consensus size: 38
16956448 TAGAAAACTA
*
16956458 TTGTACTTCGGTACCCCTGATCA-CACTTACGTGCCCCAG
1 TTGTACTTCAGTA-CCCTGAT-AGCACTTACGTGCCCCAG
* * *
16956497 TTGTACTTCAATACCCGTGATCGCACTTACGTGCCCCTG
1 TTGTACTTCAGTACCC-TGATAGCACTTACGTGCCCCAG
* *
16956536 TTGTACTTCAGTACTCCTAATAGCACTTTCGTGCC
1 TTGTACTTCAGTAC-CCTGATAGCACTTACGTGCC
16956571 GTGTTTATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.05
39 58 0.92
40 2 0.03
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.32
Consensus pattern (38 bp):
TTGTACTTCAGTACCCTGATAGCACTTACGTGCCCCAG
Found at i:16960463 original size:29 final size:29
Alignment explanation
Indices: 16960430--16960720 Score: 264
Period size: 29 Copynumber: 10.0 Consensus size: 29
16960420 AGTCTAATCA
*
16960430 TGATGGCCGTCACCGTCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
*
16960459 TGATGGTCGTCACCATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * * *
16960488 CGATAGCCG-AAGCTATGCCTTTTCATAAT
1 TGATGGCCGTCA-CCATCCCTTTTCATAAT
* * *
16960517 TCGATGGTCATCACCATCCCTTTTCATAGT
1 T-GATGGCCGTCACCATCCCTTTTCATAAT
16960547 TGATGGCCGTCACCATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * ** **
16960576 CGTTAGCC-AAAGTATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * *
16960604 TCGATGGTCGTCTCCAACCCTTTTCATAGT
1 T-GATGGCCGTCACCATCCCTTTTCATAAT
* *
16960634 TGATGGTCATCACCATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * *
16960663 TGATAGCCG-AAGCTATCCCTTTTCATAAT
1 TGATGGCCGTCA-CCATCCCTTTTCATAAT
* *
16960692 TCAATGGTCGTCACCATCCCTTTTCATAA
1 T-GATGGCCGTCACCATCCCTTTTCATAA
16960721 CAGATAGCCG
Statistics
Matches: 203, Mismatches: 51, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
28 18 0.09
29 129 0.64
30 54 0.27
31 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (29 bp):
TGATGGCCGTCACCATCCCTTTTCATAAT
Found at i:16960532 original size:59 final size:59
Alignment explanation
Indices: 16960445--16960756 Score: 330
Period size: 59 Copynumber: 5.3 Consensus size: 59
16960435 GCCGTCACCG
*
16960445 TCCCTTTTCATAATT-GATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* * * * * *
16960503 TGCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAGTTGATGGCCGTCA-CCA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCG-AAGCTA
* * * * ** * * *** *
16960562 TCCCTTTTCATAA-TCGTTAGCCA-AAGTATCCCTTTTCATAATTCGATGGTCGTCTCCA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAA-TCGATAGCCGAAGCTA
* * *
16960620 ACCCTTTTCATAGTT-GATGGTCATCACCATCCCTTTTCATAATTGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* *
16960678 TCCCTTTTCATAATTCAATGGTCGTCACCATCCCTTTTCATAA-CAGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATC-GATAGCCGAAGCTA
*
16960737 TCCCTTTTCACAATTCGATG
1 TCCCTTTTCATAATTCGATG
16960757 ATCGTCAATA
Statistics
Matches: 205, Mismatches: 41, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
57 14 0.07
58 70 0.34
59 120 0.59
60 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (59 bp):
TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
Found at i:16960583 original size:88 final size:88
Alignment explanation
Indices: 16960431--16960719 Score: 454
Period size: 88 Copynumber: 3.3 Consensus size: 88
16960421 GTCTAATCAT
* * *
16960431 GATGGCCGTCACCGTCCCTTTTCATAATTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC
*
16960496 GAAGCTATGCCTTTTCATAATTC
66 GAAGCTATCCCTTTTCATAATTC
* * *
16960519 GATGGTCATCACCATCCCTTTTCATAGTTGATGGCCGTCACCATCCCTTTTCATAATCGTTAGCC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC
*
16960584 AAAG-TATCCCTTTTCATAATTC
66 GAAGCTATCCCTTTTCATAATTC
* * * *
16960606 GATGGTCGTCTCCAACCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAATTGATAGCC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC
16960671 GAAGCTATCCCTTTTCATAATTC
66 GAAGCTATCCCTTTTCATAATTC
*
16960694 AATGGTCGTCACCATCCCTTTTCATA
1 GATGGTCGTCACCATCCCTTTTCATA
16960720 ACAGATAGCC
Statistics
Matches: 181, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 78 0.43
88 103 0.57
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.35
Consensus pattern (88 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCC
GAAGCTATCCCTTTTCATAATTC
Found at i:17003703 original size:24 final size:24
Alignment explanation
Indices: 17003672--17003718 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
17003662 AGTGTGATTT
17003672 TGTTAGTTAGAATGACATATTTGA
1 TGTTAGTTAGAATGACATATTTGA
*
17003696 TGTTAGTTAGAATGGCATATTTG
1 TGTTAGTTAGAATGACATATTTG
17003719 GTACCATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (24 bp):
TGTTAGTTAGAATGACATATTTGA
Found at i:17006856 original size:27 final size:27
Alignment explanation
Indices: 17006825--17007002 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
17006815 TAAATTGTAC
17006825 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
17006852 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
17006878 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
17006906 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
17006934 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
17006961 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
17006988 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
17007003 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:17006939 original size:82 final size:81
Alignment explanation
Indices: 17006826--17006981 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
17006816 AAATTGTACA
* *
17006826 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
17006890 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
17006907 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
17006972 TGCGAGTTGA
65 TGCGAATTGA
17006982 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Done.