Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 63 of 185
Found at i:18291159 original size:15 final size:15
Alignment explanation
Indices: 18291139--18291170 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
18291129 ATATTAATGT
*
18291139 TATTTAATTTTAAAA
1 TATTTAATATTAAAA
18291154 TATTTAATATTAAAA
1 TATTTAATATTAAAA
18291169 TA
1 TA
18291171 ATACAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTAATATTAAAA
Found at i:18297832 original size:60 final size:62
Alignment explanation
Indices: 18297755--18297896 Score: 182
Period size: 63 Copynumber: 2.3 Consensus size: 62
18297745 TCAAACTAAG
*
18297755 TTATTTAAATAAGCCCTTACA-ATATTTTTT-TACCTAAATAAACCCTT-AGGCTATAATGGC
1 TTATTTAAATAAGCCCTTACAGATATTTTTTATACCTAAATAAACCCTTGA-GCTATAATGAC
* * * * *
18297815 TTATTTAAATAAGCCCTTATAGTATTTTTTTTATATCTAGATAAACCCTTGAGCTATATTGAC
1 TTATTTAAATAAGCCCTTACAG-ATATTTTTTATACCTAAATAAACCCTTGAGCTATAATGAC
*
18297878 TTATTTAAATAAACCCTTA
1 TTATTTAAATAAGCCCTTA
18297897 AATCTAGTTG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 20 0.28
62 8 0.11
63 42 0.59
64 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.42
Consensus pattern (62 bp):
TTATTTAAATAAGCCCTTACAGATATTTTTTATACCTAAATAAACCCTTGAGCTATAATGAC
Found at i:18297890 original size:31 final size:30
Alignment explanation
Indices: 18297789--18297896 Score: 85
Period size: 31 Copynumber: 3.5 Consensus size: 30
18297779 TTTTTTTACC
* *
18297789 TAAATAAACCCTTAGGCTATAATGGCTTATT
1 TAAATAAACCCTTA-GCTATATTGACTTATT
* ***
18297820 TAAATAAGCCCTTA--TAGTATTTTTTTTATAT
1 TAAATAAACCCTTAGCTA-TA-TTGACTTAT-T
*
18297851 CTAGATAAACCCTTGAGCTATATTGACTTATT
1 -TAAATAAACCCTT-AGCTATATTGACTTATT
18297883 TAAATAAACCCTTA
1 TAAATAAACCCTTA
18297897 AATCTAGTTG
Statistics
Matches: 59, Mismatches: 11, Indels: 15
0.69 0.13 0.18
Matches are distributed among these distances:
28 2 0.03
29 2 0.03
30 6 0.10
31 26 0.44
32 12 0.20
33 7 0.12
34 2 0.03
35 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (30 bp):
TAAATAAACCCTTAGCTATATTGACTTATT
Found at i:18315800 original size:44 final size:45
Alignment explanation
Indices: 18315743--18315861 Score: 161
Period size: 44 Copynumber: 2.7 Consensus size: 45
18315733 ATTTTACCCA
* * *
18315743 AAATGAGA-AAGACCATAGTTGAAAGATACTGTGGCATTAAACCAG
1 AAATGA-ATAAGACCATAGTTGAAAGATACTGCGACACTAAACCAG
*
18315788 -AATGAATAAGACCATGGTTGAAAGATACTGCGACACTAAACCAG
1 AAATGAATAAGACCATAGTTGAAAGATACTGCGACACTAAACCAG
**
18315832 AAATGTGTAAGACCATAGTTGAAAGATACT
1 AAATGAATAAGACCATAGTTGAAAGATACT
18315862 AAAACCATAG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 38 0.58
45 26 0.40
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGATACTGCGACACTAAACCAG
Found at i:18315868 original size:22 final size:22
Alignment explanation
Indices: 18315843--18315884 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
18315833 AATGTGTAAG
18315843 ACCATAGTTGAAAGATACTAAA
1 ACCATAGTTGAAAGATACTAAA
18315865 ACCATAGTTGAAAGATACTA
1 ACCATAGTTGAAAGATACTA
18315885 TGTCATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (22 bp):
ACCATAGTTGAAAGATACTAAA
Found at i:18315917 original size:45 final size:45
Alignment explanation
Indices: 18315865--18315982 Score: 130
Period size: 45 Copynumber: 2.6 Consensus size: 45
18315855 AGATACTAAA
* *
18315865 ACCATAGTTGAAAGATACTATGTCATTAAATCTGATACGAAT-AAG
1 ACCATAGTTGAAAGAAACTATGTCATTAAAT-TGATAAGAATCAAG
* * * * *
18315910 ACCATAGTTGAAAGAAAATATGTCATCACATTGGTAATAATCAAG
1 ACCATAGTTGAAAGAAACTATGTCATTAAATTGATAAGAATCAAG
* * *
18315955 ACCATAGTTGGAAGACACTATGACATTA
1 ACCATAGTTGAAAGAAACTATGTCATTA
18315983 CTTCGGGAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 7 0.12
45 53 0.88
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.27
Consensus pattern (45 bp):
ACCATAGTTGAAAGAAACTATGTCATTAAATTGATAAGAATCAAG
Found at i:18320366 original size:31 final size:29
Alignment explanation
Indices: 18320297--18320370 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
18320287 ACCTCAAGTT
* *
18320297 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTACGTTTGAAATGTA
* * *
18320326 ATATTTTAGTCACTTACGTTATCGTATTGTA
1 ACATTTTAGTCACTTACGTT-T-GAAATGTA
18320357 ACATTTTAGTCACT
1 ACATTTTAGTCACT
18320371 GAGCCGTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 18 0.49
30 1 0.03
31 18 0.49
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTACGTTTGAAATGTA
Found at i:18333490 original size:16 final size:16
Alignment explanation
Indices: 18333453--18333494 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
18333443 TTAATCATAT
*
18333453 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
18333469 TT-AAATATATTATAA
1 TTAAAATATATTATAA
18333484 TTAAAATATAT
1 TTAAAATATAT
18333495 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:18333501 original size:14 final size:15
Alignment explanation
Indices: 18333462--18333503 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
18333452 TTTAAACATA
*
18333462 ATTATTATTAAATAT
1 ATTATAATTAAATAT
18333477 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
18333491 A-TATAATTTAATA
1 ATTATAATTAAATA
18333504 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:18333621 original size:14 final size:15
Alignment explanation
Indices: 18333572--18333623 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
18333562 ATAAAATATA
18333572 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
18333587 TATTAAATATATTAT
1 AATTAAATATATTAT
18333602 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
18333615 AATTTAATA
1 AATTAAATA
18333624 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:18333810 original size:64 final size:64
Alignment explanation
Indices: 18333501--18333810 Score: 189
Period size: 59 Copynumber: 5.1 Consensus size: 64
18333491 ATATAATTTA
*
18333501 ATAAAATTCTTAAT-A--ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATTATAAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * * * * * *
18333562 ATAAAA-T-AT-A-AATTA-ACATAATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-T
1 ATAAAATTCTTAATAATTATAAAT-ATTCTTATATGAATTTACTCA-AATCATAATATATGATAC
18333619 T
64 T
* *
18333620 AATAAAATTCTTAAT-A--ATCAGTATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTATAAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * ** * *
18333682 ATAAAA-----GATAATT-TGAAATAATTATTAT-TAAATATATTTTAATTAAAATATATG--AC
1 ATAAAATTCTTAATAATTAT-AAAT-ATTCTTATATGAATTTACTCAAATCATAATATATGATAC
18333738 TT
64 -T
*
18333740 AATAAAATTCTTAATAATTATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTATAAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
18333805 ATAAAA
1 ATAAAA
18333811 GATAGTTTGA
Statistics
Matches: 175, Mismatches: 44, Indels: 57
0.63 0.16 0.21
Matches are distributed among these distances:
56 2 0.01
57 3 0.02
58 7 0.04
59 55 0.31
60 25 0.14
61 33 0.19
62 5 0.03
63 7 0.04
64 34 0.19
65 2 0.01
66 2 0.01
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (64 bp):
ATAAAATTCTTAATAATTATAAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
Found at i:18333883 original size:123 final size:120
Alignment explanation
Indices: 18333459--18333871 Score: 666
Period size: 120 Copynumber: 3.4 Consensus size: 120
18333449 ATATTTAAAC
*
18333459 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATAT
1 ATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAATAATCAATAT
* *
18333524 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-AA
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
* *
18333578 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAGTA
1 -ATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAATAATCAATA
18333643 TTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
65 TTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
* * *
18333699 ATAATTATTATTAAATATATTTTAATTAAAATATATGACTTAATAAAATTCTTAATAATTATTAA
1 ATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAAT-A--ATCAA
*
18333764 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAGTTTGAA
63 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
* * * *
18333822 AGAATTAATATTAAATATATTTTAATTAAAATATATGACTTAATAAAATT
1 ATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATT
18333872 TAAAATAATT
Statistics
Matches: 278, Mismatches: 11, Indels: 5
0.95 0.04 0.02
Matches are distributed among these distances:
120 167 0.60
121 3 0.01
123 108 0.39
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.42
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTATAATTAAAATATATAACTTAATAAAATTCTTAATAATCAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA
Found at i:18333941 original size:26 final size:28
Alignment explanation
Indices: 18333912--18333972 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
18333902 TATGAATTTG
*
18333912 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
18333938 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
18333966 TAAAATT
1 TATAATT
18333973 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:18333970 original size:47 final size:46
Alignment explanation
Indices: 18333919--18334062 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
18333909 TTGTATAATT
18333919 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
18333966 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
18334010 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
18334057 TAAAAT
1 TAAAAT
18334063 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:18333983 original size:91 final size:90
Alignment explanation
Indices: 18333887--18334094 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 90
18333877 TAATTATAAC
* * * *
18333887 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
18333952 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
18333978 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
18334043 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
18334069 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
18334095 CTAAAATCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
91 87 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:18334054 original size:44 final size:43
Alignment explanation
Indices: 18333912--18334054 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
18333902 TATGAATTTG
* *
18333912 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
18333956 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
18334003 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
18334047 TATAATTT
1 TATAATTT
18334055 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:18334069 original size:47 final size:47
Alignment explanation
Indices: 18333937--18334075 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
18333927 TTATTATTAC
* *
18333937 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
18333984 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
18334028 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
18334075 A
1 A
18334076 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:18339642 original size:2 final size:2
Alignment explanation
Indices: 18339635--18339664 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
18339625 TGAGATAAAT
18339635 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
18339665 GAACCCTTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18340479 original size:11 final size:11
Alignment explanation
Indices: 18340463--18340487 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18340453 AACCAAACAC
18340463 GGGATTAAGTG
1 GGGATTAAGTG
18340474 GGGATTAAGTG
1 GGGATTAAGTG
18340485 GGG
1 GGG
18340488 CCCACGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.52, T:0.24
Consensus pattern (11 bp):
GGGATTAAGTG
Found at i:18345734 original size:16 final size:16
Alignment explanation
Indices: 18345713--18345759 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
18345703 CATCTTTTAT
18345713 TTAATTAACATTTAAC
1 TTAATTAACATTTAAC
* *
18345729 TTAATTATCAAATT-AC
1 TTAATTAAC-ATTTAAC
18345745 TTAATTAACATTTAA
1 TTAATTAACATTTAA
18345760 AAATTACCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATTAACATTTAAC
Found at i:18345764 original size:22 final size:21
Alignment explanation
Indices: 18345738--18345782 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
18345728 CTTAATTATC
*
18345738 AAATTA-CTTAATTAACATTTAA
1 AAATTACCATAATT-ACA-TTAA
18345760 AAATTACCATAATTACATTAA
1 AAATTACCATAATTACATTAA
18345781 AA
1 AA
18345783 CCTATCCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 9 0.43
23 6 0.29
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATTACCATAATTACATTAA
Found at i:18349777 original size:17 final size:18
Alignment explanation
Indices: 18349745--18349778 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18349735 CCATGTGGTC
18349745 TGCCCATGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
*
18349763 TGCCCTTGT-GGCCCAC
1 TGCCCATGTGGGCCCAC
18349779 TCGGCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.41, G:0.26, T:0.21
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:18354756 original size:16 final size:16
Alignment explanation
Indices: 18354735--18354781 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
18354725 CATCTTTTAT
18354735 TTAATTAACATTTAAC
1 TTAATTAACATTTAAC
* *
18354751 TTAATTATCAAATT-AC
1 TTAATTAAC-ATTTAAC
18354767 TTAATTAACATTTAA
1 TTAATTAACATTTAA
18354782 AAATTTCCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATTAACATTTAAC
Found at i:18354956 original size:18 final size:17
Alignment explanation
Indices: 18354917--18354958 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
18354907 AACTTTTACA
*
18354917 CTTTTTACGATTTAGTC
1 CTTTTTACGATTTAGAC
*
18354934 CTTTTTATGATTTAGAC
1 CTTTTTACGATTTAGAC
18354951 CTTTTTAC
1 CTTTTTAC
18354959 TTAATTAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.19, C:0.17, G:0.10, T:0.55
Consensus pattern (17 bp):
CTTTTTACGATTTAGAC
Found at i:18366613 original size:16 final size:16
Alignment explanation
Indices: 18366599--18366631 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
18366589 TTATTAAATG
18366599 AATAAAAGTAAAAATAA
1 AATAAAA-TAAAAATAA
18366616 AATAAAAT-AAAATAA
1 AATAAAATAAAAATAA
18366631 A
1 A
18366632 TGAAACATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:18374174 original size:27 final size:27
Alignment explanation
Indices: 18374151--18374235 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
18374141 ATAAAAAGGT
**
18374151 AGCCTTTGTGGCGATCTATGAAAACCA
1 AGCCTTTGTGGCGATCTATGAAAAGAA
18374178 AGCCTTTGTGGCGATCTATGAAAA-AA
1 AGCCTTTGTGGCGATCTATGAAAAGAA
* *
18374204 ATCCTTTGTGGGGATCTATGATAAAG-A
1 AGCCTTTGTGGCGATCTATGA-AAAGAA
18374231 AGCCT
1 AGCCT
18374236 CTATGGCACA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 20 0.38
27 32 0.62
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (27 bp):
AGCCTTTGTGGCGATCTATGAAAAGAA
Found at i:18374219 original size:26 final size:27
Alignment explanation
Indices: 18374151--18374224 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
18374141 ATAAAAAGGT
*
18374151 AGCCTTTGTGGCGATCTATGAAAACCA
1 AGCCTTTGTGGCGATCTATGAAAACAA
18374178 AGCCTTTGTGGCGATCTATGAAAA-AA
1 AGCCTTTGTGGCGATCTATGAAAACAA
* *
18374204 ATCCTTTGTGGGGATCTATGA
1 AGCCTTTGTGGCGATCTATGA
18374225 TAAAGAAGCC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 20 0.45
27 24 0.55
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCCTTTGTGGCGATCTATGAAAACAA
Found at i:18378624 original size:51 final size:52
Alignment explanation
Indices: 18378532--18378640 Score: 166
Period size: 51 Copynumber: 2.1 Consensus size: 52
18378522 ATATAACTGG
* *
18378532 TGAAAATGGAGAAATGAGAAACATTTGAAAATGATTATGGTTTTCTCCAAAA
1 TGAAAATAGAGAAATGAGAAACATTTGAAAATGAATATGGTTTTCTCCAAAA
* * *
18378584 TGAAAATAGAGAAATGA-AATCATTTGGAAATGAATGTGGTTTTCTCCAAAA
1 TGAAAATAGAGAAATGAGAAACATTTGAAAATGAATATGGTTTTCTCCAAAA
18378635 TGAAAA
1 TGAAAA
18378641 ATAAAATGTG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
51 36 0.69
52 16 0.31
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.28
Consensus pattern (52 bp):
TGAAAATAGAGAAATGAGAAACATTTGAAAATGAATATGGTTTTCTCCAAAA
Found at i:18394021 original size:27 final size:27
Alignment explanation
Indices: 18393943--18394021 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
18393933 AACAAGTGAG
* * *
18393943 GAAAAAGAAAAAGGAGAAGAGAAAAAT
1 GAAAATGAAAAAGGAGAAAAGGAAAAT
* *
18393970 -AAAAGTGAAAAAGAAGAAAATGAAAAT
1 GAAAA-TGAAAAAGGAGAAAAGGAAAAT
*
18393997 GAAAATGAAAAAGGCGAAAAGGAAA
1 GAAAATGAAAAAGGAGAAAAGGAAA
18394022 GCGAGAGAGA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.10
27 34 0.81
28 4 0.10
ACGTcount: A:0.68, C:0.01, G:0.24, T:0.06
Consensus pattern (27 bp):
GAAAATGAAAAAGGAGAAAAGGAAAAT
Found at i:18394120 original size:36 final size:33
Alignment explanation
Indices: 18394056--18394126 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 33
18394046 TGAAAGAAAT
*
18394056 GAGTGAAAAAGAGAGAGAGCTTAAACAAGGAAG
1 GAGTGAAAAAGAGAGAGAGCTAAAACAAGGAAG
* * *
18394089 GAGTGAAGAAGAAGAGAGTGCTCAAACACAAGGGAG
1 GAGTGAAAAAG-AGAGAGAGCT-AAA-ACAAGGAAG
18394125 GA
1 GA
18394127 ATATTTTTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
33 10 0.32
34 9 0.29
35 2 0.06
36 10 0.32
ACGTcount: A:0.48, C:0.08, G:0.35, T:0.08
Consensus pattern (33 bp):
GAGTGAAAAAGAGAGAGAGCTAAAACAAGGAAG
Found at i:18397466 original size:20 final size:20
Alignment explanation
Indices: 18397438--18397496 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
18397428 ACGAGTTGAA
18397438 TTGAGCTCGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTGAC
*
18397458 TTGAACTCGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTGAC
18397478 TTGAGCTC-AAGTGAGCTGA
1 TTGAGCTCGAA-TGAGCTGA
18397497 ACCACATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 34 0.94
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTGAC
Found at i:18405984 original size:23 final size:22
Alignment explanation
Indices: 18405933--18405984 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
18405923 CCTCGTCTTT
*
18405933 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
18405955 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
18405978 TTCTTTT
1 TTCTTTT
18405985 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:18405999 original size:18 final size:18
Alignment explanation
Indices: 18405978--18406016 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
18405968 TTTCTTCAAC
* *
18405978 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
18405996 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
18406014 TTC
1 TTC
18406017 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:18419939 original size:14 final size:14
Alignment explanation
Indices: 18419920--18419954 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
18419910 TCAAGTTGAA
18419920 AAAAAAAATTCGTG
1 AAAAAAAATTCGTG
18419934 AAAAAAAATTCGTG
1 AAAAAAAATTCGTG
18419948 AAAAAAA
1 AAAAAAA
18419955 GAAGAAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (14 bp):
AAAAAAAATTCGTG
Found at i:18425508 original size:17 final size:19
Alignment explanation
Indices: 18425469--18425513 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
18425459 AAAAGAAGAA
18425469 AAAAAAGAAGTTTCGGAAGT
1 AAAAAA-AAGTTTCGGAAGT
*
18425489 AAAAAAAA-TTT-GGAATT
1 AAAAAAAAGTTTCGGAAGT
18425506 AAAAAAAA
1 AAAAAAAA
18425514 AGAGAAGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 13 0.54
18 3 0.12
19 2 0.08
20 6 0.25
ACGTcount: A:0.62, C:0.02, G:0.16, T:0.20
Consensus pattern (19 bp):
AAAAAAAAGTTTCGGAAGT
Found at i:18426962 original size:16 final size:15
Alignment explanation
Indices: 18426943--18426972 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
18426933 AGTATCAATT
18426943 TTTGATTGGTGATGAC
1 TTTGATTGG-GATGAC
18426959 TTTGATTGGGATGA
1 TTTGATTGGGATGA
18426973 TGGATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
TTTGATTGGGATGAC
Found at i:18432488 original size:12 final size:12
Alignment explanation
Indices: 18432471--18432502 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
18432461 TTTCTCTTCT
18432471 TTTTTTTTCAAA
1 TTTTTTTTCAAA
18432483 TTTTTTTTCAAA
1 TTTTTTTTCAAA
18432495 TTTTTTTT
1 TTTTTTTT
18432503 TTCGATTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTTTTCAAA
Found at i:18454182 original size:21 final size:22
Alignment explanation
Indices: 18454146--18454191 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
18454136 TATTTGTTGG
18454146 AATAAAATTAGTTTAAGTATTT
1 AATAAAATTAGTTTAAGTATTT
* *
18454168 AATAAATTTAG-TTAAGTGTTT
1 AATAAAATTAGTTTAAGTATTT
18454189 AAT
1 AAT
18454192 TTGTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (22 bp):
AATAAAATTAGTTTAAGTATTT
Found at i:18456083 original size:19 final size:20
Alignment explanation
Indices: 18456051--18456088 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
18456041 CAAGCTGACT
18456051 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
*
18456071 TTAGCTC-ATTTCATCTCC
1 TTAGCTCAATTTCAGCTCC
18456089 AATCAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.18, C:0.34, G:0.08, T:0.39
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:18466812 original size:10 final size:11
Alignment explanation
Indices: 18466781--18466811 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
18466771 TTCGTAACGA
18466781 AAAAAAAAAGTC
1 AAAAAAAAA-TC
18466793 AAAAAAAAATC
1 AAAAAAAAATC
18466804 AAAAAAAA
1 AAAAAAAA
18466812 TTTGAGTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.84, C:0.06, G:0.03, T:0.06
Consensus pattern (11 bp):
AAAAAAAAATC
Found at i:18466926 original size:12 final size:13
Alignment explanation
Indices: 18466898--18466925 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18466888 AAAAGAGAAG
18466898 AAATTCAAAAAAA
1 AAATTCAAAAAAA
18466911 AAATTCAAAAAAA
1 AAATTCAAAAAAA
18466924 AA
1 AA
18466926 TCGAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATTCAAAAAAA
Found at i:18466932 original size:12 final size:12
Alignment explanation
Indices: 18466898--18466935 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
18466888 AAAAGAGAAG
18466898 AAATTCAAAAAAA
1 AAATTC-AAAAAA
18466911 AAATTCAAAAAA
1 AAATTCAAAAAA
18466923 AAA-TCGAAAAAA
1 AAATTC-AAAAAA
18466935 A
1 A
18466936 GGAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 2 0.08
12 16 0.67
13 6 0.25
ACGTcount: A:0.76, C:0.08, G:0.03, T:0.13
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:18466992 original size:12 final size:12
Alignment explanation
Indices: 18466929--18466993 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
18466919 AAAAAAATCG
18466929 AAAAAAAG-G-A
1 AAAAAAAGTGAA
18466939 AAAAAAAGTGACA
1 AAAAAAAGTGA-A
*
18466952 AAAAAATCGAGTTAA
1 AAAAAA---AGTGAA
*
18466967 AAAAAAAGAAGAA
1 AAAAAAAG-TGAA
18466980 AAAAAAAGTGAA
1 AAAAAAAGTGAA
18466992 AA
1 AA
18466994 GTCTTGCGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
10 8 0.18
11 1 0.02
12 7 0.16
13 17 0.39
15 7 0.16
16 4 0.09
ACGTcount: A:0.74, C:0.03, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAAAAAGTGAA
Found at i:18468023 original size:11 final size:11
Alignment explanation
Indices: 18468007--18468036 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
18467997 AAAGAAATTG
18468007 AAAGAAAACAA
1 AAAGAAAACAA
*
18468018 AAAGAAAACGA
1 AAAGAAAACAA
18468029 AAAGAAAA
1 AAAGAAAA
18468037 AGAAATTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAAAACAA
Found at i:18468030 original size:6 final size:6
Alignment explanation
Indices: 18468007--18468113 Score: 58
Period size: 6 Copynumber: 17.7 Consensus size: 6
18467997 AAAGAAATTG
* * ** *
18468007 AAAG-A AAACAA AAAGAA AACG-A AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
* ** * * *
18468053 AAAGAA ATCA-AA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA A-AAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
18468104 AAAGAA AAAG
1 AAAGAA AAAG
18468114 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 22, Indels: 13
0.68 0.20 0.12
Matches are distributed among these distances:
5 8 0.11
6 53 0.73
7 8 0.11
8 4 0.05
ACGTcount: A:0.72, C:0.04, G:0.18, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:18468093 original size:14 final size:13
Alignment explanation
Indices: 18468074--18468111 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
18468064 AAAAGTGAGA
18468074 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
18468086 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
18468101 GAAAAAGAAAA
1 GAAAAAGAAAA
18468112 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:18468108 original size:13 final size:12
Alignment explanation
Indices: 18467993--18468111 Score: 54
Period size: 12 Copynumber: 10.0 Consensus size: 12
18467983 AGAAAGAGAT
*
18467993 TGAAAAAGAAAT
1 TGAAAAAGAAAA
18468005 TG--AAAGAAAA
1 TGAAAAAGAAAA
*
18468015 -CAAAAAGAAAA
1 TGAAAAAGAAAA
*
18468026 CG-AAAAGAAAA
1 TGAAAAAGAAAA
* **
18468037 AGAAATTGCAAAA
1 TGAAAAAG-AAAA
18468050 -GAAAAAG-AAA
1 TGAAAAAGAAAA
* * *
18468060 TCAAAAAAGTGAGA
1 T-GAAAAAG-AAAA
18468074 -GAAAAAGAAAA
1 TGAAAAAGAAAA
18468085 TGAAGAAAAGAAAA
1 TG-A-AAAAGAAAA
18468099 TTGAAAAAGAAAA
1 -TGAAAAAGAAAA
18468112 AGCGAAAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 25
0.68 0.11 0.21
Matches are distributed among these distances:
10 10 0.12
11 20 0.25
12 23 0.28
13 14 0.17
14 12 0.15
15 2 0.02
ACGTcount: A:0.71, C:0.03, G:0.18, T:0.08
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:18468148 original size:12 final size:12
Alignment explanation
Indices: 18468117--18468148 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
18468107 GAAAAAGCGA
*
18468117 AAAAAGAATTTG
1 AAAAAGAGTTTG
18468129 AAAAAGAGTTTG
1 AAAAAGAGTTTG
18468141 AAAAAGAG
1 AAAAAGAG
18468149 AAGAGTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.22, T:0.19
Consensus pattern (12 bp):
AAAAAGAGTTTG
Found at i:18471665 original size:13 final size:13
Alignment explanation
Indices: 18471647--18471696 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
18471637 AGGTTCTTTG
18471647 AAAAAAAATTCGA
1 AAAAAAAATTCGA
18471660 AAAAAAAATTTCGA
1 AAAAAAAA-TTCGA
*
18471674 AAAAAAAATTCAA
1 AAAAAAAATTCGA
18471687 AAAAAAAATT
1 AAAAAAAATT
18471697 TAGTTTCCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
13 22 0.63
14 13 0.37
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.18
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:18477865 original size:29 final size:28
Alignment explanation
Indices: 18477829--18477906 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
18477819 TCATGAGATT
18477829 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
18477859 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
18477886 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
18477907 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:18478124 original size:174 final size:174
Alignment explanation
Indices: 18477859--18478360 Score: 986
Period size: 174 Copynumber: 2.9 Consensus size: 174
18477849 AAATTGTACA
18477859 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
18477924 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
18477989 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
18478033 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
18478098 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
18478163 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
18478207 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
18478272 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
18478337 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
18478361 ACCTTGAGTT
Statistics
Matches: 326, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 326 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:18486084 original size:27 final size:27
Alignment explanation
Indices: 18486054--18486232 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
18486044 ATATTGAGCC
* * * *
18486054 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
18486081 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
18486108 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
18486136 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
18486163 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
18486190 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
18486217 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
18486233 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:18486193 original size:82 final size:81
Alignment explanation
Indices: 18486080--18486230 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
18486070 TATAATCATC
* *
18486080 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
18486145 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
18486162 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
18486226 AGTGC
65 AGTGC
18486231 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:18486797 original size:13 final size:13
Alignment explanation
Indices: 18486779--18486803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18486769 TACTAAATTT
18486779 TCATGGATTCAAG
1 TCATGGATTCAAG
18486792 TCATGGATTCAA
1 TCATGGATTCAA
18486804 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:18488074 original size:101 final size:101
Alignment explanation
Indices: 18487887--18488562 Score: 615
Period size: 100 Copynumber: 6.9 Consensus size: 101
18487877 GGGCGAATGA
* * * * *
18487887 TGTCATGCCAAACTACCCAACCAAATTGCC-CAGCCAAAA-TTGATTAAATGCAAAATTAAGA-G
1 TGTCATGCCAAACTACCCAGCCAAACTACCTTA-CCAAAATTTGATTGAATGCAAAATTAAGAGG
* * *
18487949 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGAC
65 AA-ATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* *
18487987 TGTCACGCAAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
1 TGTCATGCCAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * * *
18488052 AATTTATATAGGCATTCAAATTGGGACGAAATGAAC
66 AATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * * * * *
18488088 TGTCATGCTAAGCTACCCAGCAAAACTA-TTCTACCAAAATTT-ATTAAATGCAAAATTAAGAGT
1 TGTCATGCCAAACTACCCAGCCAAACTACCT-TACCAAAATTTGATTGAATGCAAAATTAAGAGG
* * *
18488151 AAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
65 AAATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * * ** **
18488188 TGTCGTGCCAAACTATCCAACCAAACTGTCTTACC-AAATTTGATTGAATGCAAAATTTGGAGGA
1 TGTCATGCCAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * * *** *
18488252 CATTTCTTTAAGCATTTAAATTGGGATGGAATAGAC
66 AATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * * * * * *
18488288 TGTCATGCCAAACTACCCAACAAAATTGGCC-T-GCAAAAATTGATTGAATGCAAAATTAAGAAG
1 TGTCATGCCAAACTACCCAGCCAAACT-ACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGG
* *
18488351 ACATTTTTATAAGCATTCAAATTAGGG-CAAAATGGAC
65 AAATTTCTATAAGCATTCAAATT-GGGACAAAATGGAC
* *
18488388 TGTCATGCCAAACT-----G------T--CTTATCAAAATTGGATTGAATGCAAAATTAAGAGGA
1 TGTCATGCCAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
* *
18488440 TATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
66 AATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * * * * * *
18488476 TGTCATCCCAAACTACCTAGTCAAACTACCCTT-CTAAAATTTGATTGAATTCAAGATTAAGAGT
1 TGTCATGCCAAACTACCCAGCCAAACTA-CCTTACCAAAATTTGATTGAATGCAAAATTAAGAGG
*
18488540 ACATTTCTATAAGCATTCAAATT
65 AAATTTCTATAAGCATTCAAATT
18488563 TAATTGAATG
Statistics
Matches: 469, Mismatches: 81, Indels: 51
0.78 0.13 0.08
Matches are distributed among these distances:
86 1 0.00
87 4 0.01
88 70 0.15
89 1 0.00
93 1 0.00
99 8 0.02
100 239 0.51
101 139 0.30
102 6 0.01
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (101 bp):
TGTCATGCCAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
AATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
Found at i:18488427 original size:88 final size:87
Alignment explanation
Indices: 18488323--18488489 Score: 264
Period size: 88 Copynumber: 1.9 Consensus size: 87
18488313 TTGGCCTGCA
*
18488323 AAAATTGATTGAATGCAAAATTAAGAAGACATTTTTATAAGCATTCAAATTAGGG-CAAAATGGA
1 AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATT-GGGACAAAATGGA
*
18488387 CTGTCATGCCAAACTGTCTTATC
65 CTGTCATCCCAAACTGTCTTATC
* * *
18488410 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGGACGAAATGGA
1 AAAATT-GATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
18488475 CTGTCATCCCAAACT
65 CTGTCATCCCAAACT
18488490 ACCTAGTCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
87 9 0.12
88 64 0.88
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (87 bp):
AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
TGTCATCCCAAACTGTCTTATC
Found at i:18488606 original size:45 final size:46
Alignment explanation
Indices: 18488512--18488608 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
18488502 TACCCTTCTA
* * * * *
18488512 AAATTTGATTGAATTCAAGATTAAGAGTACATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
18488558 AAATTTAATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
18488603 AAATTT
1 AAATTT
18488609 GAAAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
Found at i:18488790 original size:101 final size:100
Alignment explanation
Indices: 18488558--18489352 Score: 660
Period size: 101 Copynumber: 7.9 Consensus size: 100
18488548 ATAAGCATTC
* * **
18488558 AAATTTAATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTCAAATTTGAAAAAAAAAATTG
1 AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATT-AAAATTG--GGAAAAAA-TG
* * * * *
18488623 GACTGTCATGCAAAACTACCCTACCAAATTACCCTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
18488662 AAA-TTGATTGAATGCAAAATTAGGAGAATATTTTTATAAGAATTAAAATTGGGACAAAATGGA-
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** *
18488725 TGGTCACACAAAACTACCCAACCAAACCGCCTTACCA
65 T-GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * **
18488762 AAATTTGATTGAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATT-AAAATTG--GGAAAAAATG
* * * *
18488827 AACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
18488866 AAA-TTGATTGAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGAT
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** * *
18488930 TGTCACACAAAACTACCCAGCCAAACTACCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* ** * *
18488966 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * * **
18489031 TATCGTGCCAAACTACCC-AGCAAACT-ATTCTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCT-TACCA
* ** * *
18489066 AAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAAGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * *
18489130 TGTCGTGCCAAACTATCCAACCAAACTGCCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * * * *** *
18489166 AAATTTCATTGAATGCAAAATTTGAAG-GACATTTCTTTAAGCATTTAAATTGGGATGGAATAGA
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGA
* * * * *
18489230 CTATCATGCCAAACTACAC-AGCAAATTGGCC-TA-C-
64 CTGTCATGCAAAACTACCCAACCAAACT-GCCTTACCA
* * * * *** *
18489264 AAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * *
18489328 TGTCTTGCCAAACTGCCCAGCCAAA
65 TGTCATGCAAAACTACCCAACCAAA
18489353 ATTTGATTGA
Statistics
Matches: 572, Mismatches: 98, Indels: 48
0.80 0.14 0.07
Matches are distributed among these distances:
95 3 0.01
96 2 0.00
97 61 0.11
98 7 0.01
99 75 0.13
100 117 0.20
101 161 0.28
102 21 0.04
103 67 0.12
104 57 0.10
105 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (100 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGACT
GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
Found at i:18488834 original size:204 final size:200
Alignment explanation
Indices: 18488558--18494659 Score: 1041
Period size: 201 Copynumber: 31.3 Consensus size: 200
18488548 ATAAGCATTC
* *
18488558 AAATTTAATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTCAAATTTGAAAAAAAAAATTG
1 AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAA-TG
* *
18488623 GACTGTCATGCAAAACTACCCTACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAGGAG
65 GACTGTCATGCCAAACTACCC-ACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
*
18488688 AATATTTTTATAAGAATTAAAATTGGGACAAAATGGATGGTCACACAAAACTACCCAACCAAACC
129 AA-ATTTTTATAAGAATTAAAATTGGGACAAAATGGAT-GTCACACAAAACTACCCAACCAAACT
18488753 GCCTTACCA
192 GCCTTACCA
*
18488762 AAATTTGATTGAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * *
18488827 AACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCAAAATTGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCC-ACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
*
18488892 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGATTGTCACACAAAACTACCCAGCCAAACT
129 AA-ATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACT
*
18488957 ACCTTACCA
192 GCCTTACCA
* * ** *
18488966 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAA-TTG--GGAGAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * ** * *
18489028 GACTATCGTGCCAAACTACCCAGCAAACTATTCTACCAAAATTTATTGAATGCAAAATTAAGAGT
65 GACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG-
** ** * * * *** * *
18489093 AAATTTCCATAATCATTCAAATTGGGAAAAAAAGGACTGTCGTGCCAAACTATCCAACCAAACTG
129 AAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACTG
18489158 CCTTACCA
193 CCTTACCA
* * * * ** ***
18489166 AAATTTCATTGAATGCAAAATTTGAAG-GACATTTCTTTAAGCATTTAAA-TTG--GGATGGAAT
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAAT
* * * * ** *
18489227 AGACTATCATGCCAAACTACACAGCAAATTGGCCT-AC-AAATTGATTGAATGCAAAATTAAGAG
64 GGACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
* * * * * * * * **
18489290 GACATGTCTATAAGCATTCAAATTGGGGCGAAATAGACTGT---------CT----TGCCAAACT
128 GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACT
*
18489342 GCC-CAGCCA
192 GCCTTA-CCA
* *****
18489351 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA-TTG--GGGCGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
*
18489413 GACTGTCATGCC--A--A---A-C----T-GCCTGCCAAAATTGGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAATT-GATTGAATGCAAAATTAAGA-
* * ** * * ** * ** *
18489465 GACATTTCTATTGGCACTCCAATTGGGACAAAACGGATTGTCATGCCAAACTACCCAACCAAACT
128 GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACT
* *
18489530 GCCTTGCCC
192 GCCTTACCA
* * ** **
18489539 AAATTTTATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCATTCAAA-TTG--GGATGAAAT
1 AAATTTGATTGAATGCAA-AATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAAT
* * * * * * * * *
18489600 AGACGGTCACGCCAAACTACCCTGCCAAATTGCCATGCTAAAATTGATTGAATGCTAAATTAATA
64 GGACTGTCATGCCAAACTACCC-ACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * * * * ** *
18489665 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCAAAACTACCCAGCCAAAC
128 -GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
* * **
18489730 TACCCTGGCA
191 TGCCTTACCA
* * * ** **
18489740 AAA-TTGATTGAACT-CCAAATTTAGAGGACAA-TTCTAAAAGCATTCAAA-TT--AGGATGAAA
1 AAATTTGATTGAA-TGCAAAATTAAGA-GA-AATTTCTATAAGCATTCAAATTTGAAAAAAAAAA
* * * *
18489799 TGGATTGTCATGCCAAACTATCCAGCCAAATTACCTAGCTAAACTACCCAACCAAATTTGATGGA
63 TGGACTGTCATGCCAAACTACCCA-CCAAATTA-C---C----CT-GCC-A--AAA-TTGATTGA
* * ** * ** * * * * **
18489864 ATGAAAAAATAAGAGGGCAGTTAAATAA-ATATTCAAATTGGGACGAAATAGACAGTCATGCAAA
114 ATGCAAAATTAAGA-GAAATTTTTATAAGA-ATTAAAATTGGGACAAAATGGA-TGTCACACAAA
* * * * * *
18489928 AATACCCAGCCAAATTTCCCTGCCA
176 ACTACCCAACCAAACTGCCTTACCA
* * * * * * **
18489953 AAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAAA-TTG--GAACGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
** * * * * * *
18490015 GACTGTCATGTAAAACTATCTAGCCAAA-CATCCCTGCCAAAATTGACTAAATGCAAAATTAATA
65 GACTGTCATGCCAAACTACCCA-CCAAATTA-CCCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * * * * *** * *
18490079 GGACATTTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCATGTAATACTACCC-AGC-AA-
128 -GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
*
18490141 T--ATT----
191 TGCCTTACCA
* * * * *
18490145 AGA----ATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAA-TTG--AGACAAAAT
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCA-TTCAAATTTGAAAAAAAAAAT
* * * * * * ** *
18490200 GGATTGTCAAGCAAAACTTCCAAGCAAAACAGCCCTGCCAATATTGATTGAATGCAAAATTAAGA
64 GGACTGTCATGCCAAACTACCCACCAAATTA-CCCTGCCAAAATTGATTGAATGCAAAATTAAG-
** ** ** * * * ** *
18490265 AGTCATTCCTATAACCATTGAAATTTGGACGAAATGGACTGTCATGCTAAACT-----ACC---C
127 AGAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
18490322 TGCCTT----
191 TGCCTTACCA
* * * * * * * **
18490328 -AATTTGAGTAAATG-AAAATTAATATGACATTTCTGTAAG-AGTTCAAATATG---GATGAAAT
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCA-TTCAAATTTGAAAAAAAAAAT
* * * * * *
18490387 GGACAGTCATTCCAAACTACCCAGCC-AATTTCCCAGCCAAATTTTATTGAATGCAAAATTAAGA
64 GGACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA
* ** * * * ** * * * *
18490451 GGACATTTCGATAA-ACA-TACAAATTGGAAC-GAATGGACTATCATGCAAAACTATCTAGCTAA
128 -GAAATTTTTATAAGA-ATTA-AAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAA
* * * * *
18490513 CCT-TCTCCATCG
189 ACTGCCT-TACCA
** * ** **
18490525 AAA-TTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTAAA-TTG--GGACTAAATG
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* *
18490586 AACTGTCATG-C-AA-T----A-C----TACCCTGCC-AAATTGATTGAATGCTAAATTAAGAGA
65 GACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGA
* * ** ** * * ** * *
18490638 ACA-TTTTATAAGCATTCAAATTACGAGGAAATAGACAGTCATGC-CAACTACCCAGCCAAACTG
130 A-ATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACTG
*
18490701 TCC-T-GCA
193 -CCTTACCA
* * * ** ** **
18490708 ATATTTGATTGAATGC-ACATTAAGAGGACATTTCTATAAAAATTCAAA-TTG--CGACGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * *
18490769 GACTGTCATGCCAAA-TAACAAGCCAAACTACCTTGCCAATATTGATTGAATGC-AAATTAAGAG
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
* * * * * **
18490832 GACATTTCTTA-AAGCATTCAAATTTGGACAAAATGGACT-T---------TTA---TGCCAAAC
128 GAAATTT-TTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
*
18490883 TGCCCTACCA
191 TGCCTTACCA
* ** ** **
18490893 AAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCAAA-TTG--GTACGAAAT
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAG-CATTCAAATTTGAAAAAAAAAAT
* * * * * * * *
18490954 GGACTGTAATGCCAAACTACCCGGCCAAACTGCTCTACCAAAATTGATTGAATGTAAACTTAAGA
64 GGACTGTCATGCCAAACTACCC-ACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA
* * * *
18491019 GGACATTTTTATAAGTAA-TAAAATTGGGACGAAATGGACTGTCA-AGCCAAACTACCCAGCCAA
128 -GAAATTTTTATAAG-AATTAAAATTGGGACAAAATGGA-TGTCACA-CAAAACTACCCAACCAA
*
18491082 ACTTCACTT-CCA
189 ACTGC-CTTACCA
* ** ** **
18491094 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT-TTATTTG--GGATGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * * * * * *
18491156 GACTATCATGCCAAACTGCCTAACCAACTT-TCCTGCCAAAATTTGATTGAATTCGAACTTACGA
65 GACTGTCATGCCAAACTACC-CACCAAATTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA
* * * * ** ** *
18491220 GGACATTTCTATAA-ACATTCAAATTGGGACGAAATTAATTGTCATGGC-AAACTATCCAACCAA
128 -GAAATTTTTATAAGA-ATTAAAATTGGGACAAAATGGA-TGTCA-CACAAAACTACCCAACCAA
* * *
18491283 ACTACCATGCCA
189 ACTGCCTTACCA
* * * * ** *
18491295 AAA-TTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAA-TTG--GGACAAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * ** * *
18491356 AACGGTCATGCCAAACTACCCAACCAAACTGCTATGCTACAATTGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCC-ACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
* * * * * * * **
18491421 GACATTTCTATAAGCATTCAAATTGGTACGAAATGGACTG-CA-ATGCTAAACTACCCGGCCAAA
128 GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACA--CAAAACTACCCAACCAAA
* *
18491484 TTGCCCTACCA
190 CTGCCTTACCA
* * * * * *** *
18491495 AAA-TCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA--T-AGGGACAAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
** ** *
18491555 GACTG-C---CC-GCCTA---A-C----TACCGAGCCAAAATTTGATTGCATGCAAAATTAAGAT
65 GACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA-
* * * * * * * ** * *
18491607 GACATTTCTATAATAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCAACCAAAT
128 GAAATTTTTATAAGAATTAAAATTGGGAC-AAAATGGA-TGTCACACAAAACTACCCAACCAAAC
* *
18491671 TTCCTTGCCA
191 TGCCTTACCA
* * * ** **
18491681 AAATTTGATT-AATTGC-AAATTAAAATGACATTTCGATACA-CATTCAAA-TT--AGGATGAAA
1 AAATTTGATTGAA-TGCAAAATTAAGA-GAAATTTCTATA-AGCATTCAAATTTGAAAAAAAAAA
*
18491740 TGGACTGTCATGCAAAACTACCCAGCCAAACTT-CCCTGCCAAAATTGATTGAATGCAAAATTAA
63 TGGACTGTCATGCCAAACTACCCA-CCAAA-TTACCCTGCCAAAATTGATTGAATGCAAAATTAA
* * * * * ** * * * * *
18491804 GAAGACATTTCTATAA-ACATTCAAATTGGTACGAAATTAACAGTCATACCAAACTACCCAGCTA
126 G-AGAAATTTTTATAAGA-ATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCA
* * *
18491868 AATTGCCCTGCCA
188 AACTGCCTTACCA
* * * * ** *
18491881 ATATTTGATTGTATGC-AAATTAAGAGGAAATTTCTATAGGCGTTCAAA-TT--AGGACAAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* ** * * *
18491942 GACTGTCAGGCCAAACTACCCAGCCAAACAACCCTTCCAATATTTGATTGAAT-AAAAATTAAGA
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAA-AATTGATTGAATGCAAAATTAAG-
** * * * ** * ** *
18492006 AGTCATTTCTATAAGTATTATAATTGGGATGAAATGGACTCTCATGCCAAACT-----ACC---C
127 AGAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
18492063 TG-----CCA
191 TGCCTTACCA
* * * ** **
18492068 AAA-TTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAAA-TTG--GTACGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
** * * * * *
18492129 GACAATCATACCAAACTACCCAGCCAAACTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGA
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAA-AATTGATTGAATGCAAAATTAAGA
* * * * * ** * *** *
18492194 GGATATTTCTATAGGCATTCAAATTGGGA-AGAAATGGACTGTCATGCCAAACTATTGAGCCAAA
128 -GAAATTTTTATAAGAATTAAAATTGGGACA-AAATGGA-TGTCACACAAAACTACCCAACCAAA
* * *
18492258 CAGCCCTGCCA
190 CTGCCTTACCA
** * ** * * ** ** *
18492269 ATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-ATACTTG--GGACGAAATA
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
*
18492331 GACTGTCATGCCAAACTACCCAGCC-AA-TA---T-------TTGATTGAATGCAAAATTAAAAG
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
** * ** * * * **
18492384 GACCTTTCTATAA-ATATTCTAATTTGTACAAAATGGATTGTCATGA-AAAACT-----TTC--A
128 GAAATTTTTATAAGA-ATTAAAATTGGGACAAAATGGA-TGTCA-CACAAAACTACCCAACCAAA
18492440 -TG-----CCA
190 CTGCCTTACCA
* * ** * * ** ** *
18492445 AAA-TTGATTGAATGAAAAATTAAAATGGCATTTTTATAAGCATT-AAAATTG--GGACGAAATT
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * * *
18492506 TACTGTCAAGCCAAACT-CCCAAGCCAAACTACCCTACCAATATTTGATTGAATGTAAAATTAAG
65 GACTGTCATGCCAAACTACCC-A-CCAAATTACCCTGCCAA-AATTGATTGAATGCAAAATTAAG
* * * * ** ** * *
18492570 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
127 A-GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAA
** * * *
18492635 CAACCCT-GCG
190 CTGCCTTACCA
** * * *
18492645 GTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAA-TTG--AGACAAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * * *
18492707 GACTGTCATGCCAAGCTACCCAGCCATACTGCCTTGCCAAAATTTGATTGAATTCAAAATT-AGA
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA
* * **
18492771 GAATATTTTTATAA-ACAAT-CAATTGGGAC-AAATGGACTGT----------TA---TGCCAAA
128 GAA-ATTTTTATAAGA-ATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAA
18492820 CTGCCCTT-CCA
190 CTG-CCTTACCA
* * ** ** **
18492831 AAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTC-AA-TT--AGGACGAAATG
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* *** *
18492892 GACTATCATGTTGAACTA--C-CC-----A----GGCAAAATTTGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA-
* * * * * * * ** **
18492945 GACATTTTTATAAGTATT-CAATTGGGTCGAAATGTACTGTAATGTC-AAACTACCCAGTCAAAC
128 GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCA-CACAAAACTACCCAACCAAAC
* *
18493008 TGCCCTGCCA
191 TGCCTTACCA
* * * * * ** ** *
18493018 AAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATT-AAAATTG--GGATGAAATT
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * * *
18493080 GACTGTCATGCCAAACTACCTAGCAAAACTGA-CTTGCCAAAATTTGATTGAATGTAAAATTAAG
65 GACTGTCATGCCAAACTACCCA-CCAAA-TTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAG
* * * ** * ** * * *
18493144 AAGACATTTGTATAAGCATTAAAATTGGGATGAAATTGACTGTCATGCCAAACTA-CCTAGCAAA
127 -AGAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAA
* *
18493208 CTGACTTGCCA
190 CTGCCTTACCA
* * * ** **
18493219 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATT-AAAATTG--GGACGAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* ** * ** * * * *
18493281 TACTGTCATGGGAACCTACCCAGCCAAACAACCATACCAAAATTGATGGAATGC-AAATTTA-AG
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
* * *** * * ** ** *
18493344 ACATTTCTATATTTATTCAAATTGGGACGAAAT---TG---------ACT-TGCATGTCAAACAG
129 AAATTTTTATAAGAATTAAAATTGGGACAAAATGGATGTCACACAAAACTACCCA-ACCAAACTG
* *
18493396 CCCTGCCA
193 CCTTACCA
* * ** **
18493404 AAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAAA-TTG--GGATGAAATG
1 AAATTTGATTGAATGCAAAATTAAG-AGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* ** * *
18493466 GACTGTTATGCCAAACTACCCAACC-AATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAG
65 GACTGTCATGCCAAACTACCC-ACCAAAT-TACCCTGCCAAAA-TTGATTGAATGCAAAATTAAG
* * * * * * * ** * * *
18493530 AGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGCCAAA
127 A-GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAA
* * *
18493595 TTGCCCTATCGGGA
190 CTGCCTTA-C--CA
* * ** * * * * **
18493609 GAAAATGGACAGTCATGTC-AAATTACCAAACCAAACTGCCTTGCCA-AA--ATT-GGA-TTGAA
1 -AAATTTGATTG-AATG-CAAAATTA--AGA-GAAA-T---TT-CTATAAGCATTCAAATTTGAA
*** * * * * ** * ** * * * * *
18493668 TGCAAAATTAAGA-GGACATTTC-TA-TAAGCATTCAAATTGA----GACGAAATTGACTGTCAT
55 AAAAAAAAT-GGACTGTCATGCCAAACTACCCA-CCAAATT-ACCCTGCCAAAATTGATTG-AAT
* * * ** * ** * *
18493726 GCCAAACTACCCAGATAAACTGCCCTTCTAA-AATT-TGATT-GAACTCAAA---AT-T-----A
116 GCAAAATTA---AGAGAAA-T--TTTTATAAGAATTAAAATTGGGAC-AAAATGGATGTCACACA
* ***** * * *
18493779 AAAGTAGATTTCTATAA--GCATT---T
174 AAACTACCCAACCA-AACTGCCTTACCA
*
18493802 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTT---AAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * *
18493864 GACTGTCATGCTAAACTACCCAGCCAAAATT-CCCTTCCAAAATTGGATTGAATGCAAAATTAAA
65 GACTGTCATGCCAAACTACCCA-CC-AAATTACCCTGCCAAAATT-GATTGAATGCAAAATTAAG
* * * * * *** * * *
18493928 AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCAAA
127 A-GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAA
* *
18493993 CTGCCCTATCA
190 CTGCCTTACCA
* * * ** ** *
18494004 AAA-TTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATT-AAAATTG--GGATGAAATA
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * * *
18494065 GACTGTCATGCCAAACTACCAAACTAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTATGAG
65 GACTGTCATGCCAAACTACC-CACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
* * *
18494130 AACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACTACCCAACCAAACT
129 AA-ATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACT
*
18494195 GCCTTTCCA
192 GCCTTACCA
* * * * ** *
18494204 AAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAA-TTG--GGACAAAATG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * **
18494266 GACTGTCATGCCAAACTACCCAGCAAAACTATTCTGCC-AAATTGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
* ** * * * ** * *
18494330 GAAACTTCCATAAGCATTCAAATTGAGGAGAAAATGGACTGTCATGCCAAACTATCCAACCAAAC
128 GAAATTTTTATAAGAATTAAAATTG-GGACAAAATGGA-TGTCACACAAAACTACCCAACCAAAC
*
18494395 TGCCCTACCA
191 TGCCTTACCA
* * * * * * ** * * *
18494405 AAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAA-TTG--GGATAGAATA
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
* * **
18494467 GACTATCATGCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTGATTGAATGCAAAATTAAGAG
65 GACTGTCATGCCAAACTACCCA-CCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-
* * * * * * * ** * * *
18494532 GACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAACT
128 GAAATTTTTATAAGAATTAAAATTGGGACAAAATGGA-TGTCACACAAAACTACCCAACCAAACT
* *
18494597 GCC-CAGACA
192 GCCTTA-CCA
*
18494606 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTATAAGCATTCAAATTTG
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTC-TATAAGCATTCAAATTTG
18494660 GACGAAATGG
Statistics
Matches: 4536, Mismatches: 961, Indels: 803
0.72 0.15 0.13
Matches are distributed among these distances:
172 28 0.01
173 26 0.01
174 21 0.00
175 118 0.03
176 6 0.00
177 3 0.00
178 1 0.00
180 1 0.00
181 5 0.00
182 4 0.00
183 54 0.01
184 69 0.02
185 289 0.06
186 391 0.09
187 297 0.07
188 282 0.06
189 114 0.03
190 5 0.00
191 28 0.01
192 22 0.00
193 10 0.00
194 3 0.00
195 25 0.01
196 45 0.01
197 51 0.01
198 118 0.03
199 83 0.02
200 773 0.17
201 952 0.21
202 201 0.04
203 11 0.00
204 201 0.04
205 39 0.01
206 16 0.00
207 23 0.01
208 3 0.00
209 10 0.00
210 22 0.00
211 10 0.00
212 15 0.00
213 92 0.02
214 69 0.02
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (200 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATGG
ACTGTCATGCCAAACTACCCACCAAATTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAA
ATTTTTATAAGAATTAAAATTGGGACAAAATGGATGTCACACAAAACTACCCAACCAAACTGCCT
TACCA
Found at i:18489417 original size:88 final size:88
Alignment explanation
Indices: 18489267--18489527 Score: 380
Period size: 88 Copynumber: 3.0 Consensus size: 88
18489257 GGCCTACAAA
* *
18489267 TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATAGACTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTGTC
*
18489332 TTGCCAAACTGCCCAGCCAAAAT
66 ATGCCAAACTGCCCAGCCAAAAT
18489355 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTGTC
*
18489420 ATGCCAAACTG-CCTGCCAAAAT
66 ATGCCAAACTGCCCAGCCAAAAT
* ** * * * * * *
18489442 TGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCAATTGGGACAAAACGGATTGTC
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTGTC
* *
18489507 ATGCCAAACTACCCAACCAAA
66 ATGCCAAACTGCCCAGCCAAA
18489528 CTGCCTTGCC
Statistics
Matches: 156, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
87 76 0.49
88 80 0.51
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (88 bp):
TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTGTC
ATGCCAAACTGCCCAGCCAAAAT
Found at i:18489684 original size:100 final size:100
Alignment explanation
Indices: 18489422--18490138 Score: 523
Period size: 100 Copynumber: 7.0 Consensus size: 100
18489412 GGACTGTCAT
** * *
18489422 GCCAAACTG-CCTGCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCA
1 GCCAAACTGCCCTGCCAAAATT-GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
18489486 ATTGGGACAAAACGGATTGTCATGCCAAACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * *
18489522 ACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCATTCA
1 GCCAAACTGCCCTG-CCAAAATTGATTGAATGCAA-AATTAAGAGGACATTTCTATAAGCATTCA
* * * * * *
18489586 AATTGGGATGAAATAGACGGTCACGCCAAACTACCCT
64 AATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * *
18489623 GCCAAATTGCCATGCTAAAATTGATTGAATGCTAAATTAATAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
18489688 TTGGGACGAAATGGACTGTTATGCAAAACTACCCA
66 TTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
18489723 GCCAAACTACCCTGGCAAAATTGATTGAACT-CCAAATTTAGAGGACAATTCTAAAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * *
18489787 ATTAGGATGAAATGGATTGTCATGCCAAACTATCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * ** * * ******
18489823 GCCAAATTACCTAGCTAAACTACCCAACCAAAT--TTG-ATGGAATGAAAAAATAAGAGGGCAGT
1 GCC-AA--A-CT-GC---CCT-GCCAA--AATTGATTGAATGCAA--AATTAAGAGGACATTTCT
** * * *
18489885 -TAAATAAATATTCAAATTGGGACGAAATAGACAGTCATGCAAAAATACCCA
53 AT-AA---GCATTCAAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
18489936 GCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAA
1 GCCAAACTGCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
18490001 ATTGGAACGAAATGGACTGTCATGTAAAACTATCTA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * *
18490037 GCCAAACAT-CCCTGCCAAAATTGACTAAATGCAAAATTAATAGGACATTTCTATAAGCATTCAA
1 GCCAAAC-TGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * *
18490101 ATTGGTACAAAATGGACTTTCATGTAATACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
18490137 GC
1 GC
18490139 AATATTAGAA
Statistics
Matches: 472, Mismatches: 116, Indels: 58
0.73 0.18 0.09
Matches are distributed among these distances:
99 2 0.00
100 233 0.49
101 131 0.28
102 12 0.03
103 2 0.00
104 15 0.03
105 7 0.01
106 5 0.01
107 1 0.00
108 5 0.01
109 7 0.01
110 10 0.02
111 3 0.01
112 2 0.00
113 37 0.08
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (100 bp):
GCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCAAAACTACCCA
Found at i:18490226 original size:86 final size:87
Alignment explanation
Indices: 18490064--18490226 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 87
18490054 AAATTGACTA
* * * *
18490064 AATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCATGTAAT
1 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCAAGCAAA
*
18490129 ACTACCCAGCAATATTAGAATT
66 ACTACCAAGCAATATTAGAATT
*
18490151 AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAATTGAG-ACAAAATGGA-TTGTCAAGC
1 AATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTG-GTACAAAATGGACTT-TCAAGC
*
18490212 AAAACTTCCAAGCAA
63 AAAACTACCAAGCAA
18490227 AACAGCCCTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 2 0.03
86 42 0.64
87 22 0.33
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.28
Consensus pattern (87 bp):
AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCAAGCAAA
ACTACCAAGCAATATTAGAATT
Found at i:18490317 original size:100 final size:100
Alignment explanation
Indices: 18490138--18490317 Score: 224
Period size: 100 Copynumber: 1.8 Consensus size: 100
18490128 TACTACCCAG
* **
18490138 CAATATTAGAATTAATGCAAAATTAAGAGGACATTCTATAAGTAGTTAAATTGAGACAAAATGGA
1 CAATATTAGAATTAATGCAAAATTAAGAAGACATTCTATAACCAGTTAAATTGAGACAAAATGGA
*
18490203 TTGTCAAGCAAAACTTCCAAGCAAAACAGCCCTGC
66 CTGTCAAGCAAAACTTCCAAGCAAAACAGCCCTGC
* *
18490238 CAATATT-G-ATTGAATGCAAAATTAAGAAGTCATTCCTATAACCA-TTGAAATTTG-GACGAAA
1 CAATATTAGAATT-AATGCAAAATTAAGAAGACATT-CTATAACCAGTT-AAA-TTGAGACAAAA
* *
18490299 TGGACTGTCATGCTAAACT
62 TGGACTGTCAAGCAAAACT
18490318 ACCCTGCCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
98 3 0.04
99 23 0.34
100 39 0.57
101 3 0.04
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27
Consensus pattern (100 bp):
CAATATTAGAATTAATGCAAAATTAAGAAGACATTCTATAACCAGTTAAATTGAGACAAAATGGA
CTGTCAAGCAAAACTTCCAAGCAAAACAGCCCTGC
Found at i:18490348 original size:186 final size:187
Alignment explanation
Indices: 18489964--18490375 Score: 426
Period size: 186 Copynumber: 2.2 Consensus size: 187
18489954 AATTTGATTG
* * * * * * * *
18489964 AATGCAAAACTAAGAGGACATTTCAATAA-ACATACAAATTG-GAACGAAATGGACTGTCATGTA
1 AATGCAAAATTAAGAGGACATTTCTATAAGA-GTTCAAATTGAG-ACAAAATGGATTGTCAAGCA
* * * * * *
18490027 AAACTAT-CTAGCCAAACATCCCTGCCAAAATTGACTAAATGCAAAATTAATAGGACATTTCTAT
64 AAACT-TCCAAGCAAAACAGCCCTGCCAAAATTGACTAAATGCAAAATTAAGAAGACATTCCTAT
* * *
18490091 AAGCATTCAAATTGGTACAAAATGGACTTTCATGTAATACTACCCAGCAATATTAGAATT
128 AACCATTCAAATTGGTACAAAATGGACTGTCATGTAATACTACCCAGCAATATTAGAATA
18490151 AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAATTGAGACAAAATGGATTGTCAAGCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAG-AGTTCAAATTGAGACAAAATGGATTGTCAAGCAA
* * * *
18490214 AACTTCCAAGCAAAACAGCCCTGCCAATATTGATTGAATGCAAAATTAAGAAGTCATTCCTATAA
65 AACTTCCAAGCAAAACAGCCCTGCCAAAATTGACTAAATGCAAAATTAAGAAGACATTCCTATAA
* * * ** * *
18490279 CCATTGAAATTTGG-ACGAAATGGACTGTCATGCTAA-ACTACCCTGCCTTAATTTGAGTA
130 CCATTCAAA-TTGGTACAAAATGGACTGTCATG-TAATACTACCCAGCAAT-ATTAGAATA
* * *
18490338 AATG-AAAATTAATATGACATTTCTGTAAGAGTTCAAAT
1 AATGCAAAATTAAGAGGACATTTCTATAAGAGTTCAAAT
18490376 ATGGATGAAA
Statistics
Matches: 185, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
185 1 0.01
186 133 0.72
187 50 0.27
188 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (187 bp):
AATGCAAAATTAAGAGGACATTTCTATAAGAGTTCAAATTGAGACAAAATGGATTGTCAAGCAAA
ACTTCCAAGCAAAACAGCCCTGCCAAAATTGACTAAATGCAAAATTAAGAAGACATTCCTATAAC
CATTCAAATTGGTACAAAATGGACTGTCATGTAATACTACCCAGCAATATTAGAATA
Found at i:18490982 original size:88 final size:86
Alignment explanation
Indices: 18490790--18490982 Score: 237
Period size: 88 Copynumber: 2.2 Consensus size: 86
18490780 CAAATAACAA
* * *
18490790 GCCAAACTACCTTGCCAATATTGATTGAATGCAAATTAAGAGGACATTTCTTAAAGCATTCAAAT
1 GCCAAACTACCCTGCCAAAATTGATTGAATGAAAATTAAGAGGACATTTCTTAAAGCATTCAAAT
* *
18490855 TTGGACAAAATGGACTTTTAT
66 TTGGACAAAATGGACTGTAAT
* * * *
18490876 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTC-TATAGACATTCA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATG-AAAATTAAGAGGACATTTCTTAAAG-CATTCA
*
18490940 AA-TTGGTACGAAATGGACTGTAAT
63 AATTTGG-ACAAAATGGACTGTAAT
*
18490964 GCCAAACTACCCGGCCAAA
1 GCCAAACTACCCTGCCAAA
18490983 CTGCTCTACC
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
86 16 0.18
87 19 0.21
88 55 0.61
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (86 bp):
GCCAAACTACCCTGCCAAAATTGATTGAATGAAAATTAAGAGGACATTTCTTAAAGCATTCAAAT
TTGGACAAAATGGACTGTAAT
Found at i:18491011 original size:100 final size:99
Alignment explanation
Indices: 18490876--18491559 Score: 658
Period size: 100 Copynumber: 6.8 Consensus size: 99
18490866 GGACTTTTAT
* * *
18490876 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTATAGACATTCAA
1 GCCAAACTGCTCTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATA-ACATTCAA
* *
18490941 ATTGGTACGAAATGGACTGTAATGCCAAACTACCCG
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
18490977 GCCAAACTGCTCTACCAAAATTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
18491042 TTGGGACGAAATGGACTGTCAA-GCCAAACTACCCA
65 TTGGGACGAAATGGACTGT-AATGCCAAACTACCCA
* * * **
18491077 GCCAAACTTCACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTA
1 GCCAAACTGCTCTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAA
* * * * * *
18491142 TTTGGGATGAAATGGACTATCATGCCAAACTGCCTA
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * * *
18491178 ACC-AACT-TTCCTGCCAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCA
1 GCCAAACTGCT-CTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AACATTCA
** * * * *
18491241 AATTGGGACGAAATTAATTGTCATGGCAAACTATCCA
63 AATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
18491278 ACCAAACTAC-CATGCCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAA
1 GCCAAACTGCTC-TACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAA
* * * *
18491342 ATTGGGACAAAATGAACGGTCATGCCAAACTACCCA
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * *
18491378 ACCAAACTGCTATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
* * * *
18491443 TTGGTACGAAATGGACTGCAATGCTAAACTACCCG
65 TTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
18491478 GCCAAATTGCCCTACCAAAATCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
* *
18491542 TAGGGACAAAATGGACTG
65 TTGGGACGAAATGGACTG
18491560 CCCGCCTAAC
Statistics
Matches: 484, Mismatches: 88, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
99 53 0.11
100 329 0.68
101 102 0.21
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (99 bp):
GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAACATTCAAAT
TGGGACGAAATGGACTGTAATGCCAAACTACCCA
Found at i:18491424 original size:200 final size:200
Alignment explanation
Indices: 18490876--18494683 Score: 2497
Period size: 201 Copynumber: 19.5 Consensus size: 200
18490866 GGACTTTTAT
* * * *
18490876 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG-CATTCA
* * * * *
18490940 AATTGGTACGAAATGGACTGTAATGCCAAACTACCCGGCCAAACTGCTCTACCAAAATTGATTGA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGA
* * * * * * *
18491005 ATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTGGGACGAAATGGACTGTCAAGCCAAA
129 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
18491070 CTACCCA
194 CTACCCA
* * * **
18491077 GCCAAACTTCACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * * * *
18491142 TTTGGGATGAAATGGACTATCATGCCAAACTGCCTAACC-AACT-TTCCTGCCAAAATTTGATTG
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCT-ATGCCAAAA-TTGATTG
* * * * * ** * *
18491205 AATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAATTGTCATGGCAA
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
*
18491270 ACTATCCA
193 ACTACCCA
* * * * *
18491278 ACCAAACTACCATGCCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * *
18491343 TTGGGACAAAATGAACGGTCATGCCAAACTACCCAACCAAACTGCTATGCTACAATTGATTGAAT
66 TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAAT
* *
18491408 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACTG-CAATGCTAAAC
131 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC-ATGCCAAAC
*
18491472 TACCCG
195 TACCCA
* * * * * * *
18491478 GCCAAATTGCCCTACCAAAATCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * ** * * *
18491542 TAGGGACAAAATGGACTG-CCCGCCTAACTACCGAGCCAAA-----AT-------TTGATTGCAT
66 TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAAT
* * * *
18491594 GCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAA
131 GCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAA-ATGGACTGTCATGCCAAA
*
18491657 ATACCCA
194 CTACCCA
* * * * * * *
18491664 ACCAAATTTCCTTGCCAAAATTTGATT-AATTGC-AAATTAAAATGACATTTCGATACA-CATTC
1 GCCAAACTACCCTGCCAAAA-TTGATTGAA-TGCAAAATTAAGAGGACATTTCTATA-AGCATTC
* * * * **
18491726 AAATTAGGATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATTG
63 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTG
* * * ** * *
18491791 AATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATTAACAGTCATACCAA
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
18491856 ACTACCCA
193 ACTACCCA
* * * * * * * *
18491864 GCTAAATTGCCCTGCCAATATTTGATTGTATGC-AAATTAAGAGGAAATTTCTATAGGCGTTCAA
1 GCCAAACTACCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * ** ** * *
18491928 ATTAGGACAAAATGGACTGTCAGGCCAAACTACCCAGCCAAACAACCCTTCCAATATTTGATTGA
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAA-AATTGATTGA
* * * * *
18491993 AT-AAAAATTAAGAAGTCATTTCTATAAGTATT-ATAATTGGGATGAAATGGAC--TC-T--C--
129 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGCCAA
18492049 A-T-----
193 ACTACCCA
* *
18492051 GCCAAACTACCCTGCCAAAATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* ** * ** *
18492116 TTGGTACGAAATGGACAATCATACCAAACTACCCAGCCAAACTGCCCTGCCAATATTTGATTGAA
66 TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAA-AATTGATTGAA
* * * *
18492181 TGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTGGGAAGAAATGGACTGTCATGCCAAAC
130 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
***
18492246 TATTGA
195 TACCCA
** * * **
18492252 GCCAAAC-AGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-A
1 GCCAAACTA-CCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
18492315 TACTTGGGACGAAATAGACTGTCATGCCAAACTACCCAGCC-AA----TAT-------TTGATTG
64 -AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTG
* * ** * * * * *
18492368 AATGCAAAATTAAAAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTCATG----
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
18492429 ---A---A
193 ACTACCCA
** * * * * *
18492431 ---AAACTTTCATGCCAAAATTGATTGAATGAAAAATTAAAATGG-CATTTTTATAAGCATTAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGA-GGACATTTCTATAAGCATTCAA
** * * ** * *
18492492 ATTGGGACGAAATTTACTGTCAAGCCAAACT-CCCAAGCCAAACTACCCTACCAATATTTGATTG
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCC-AGCCAAACTGCTATGCCAA-AATTGATTG
* *
18492556 AATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAA
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
18492621 ACTACCCA
193 ACTACCCA
* *** * *
18492629 GCCAAACAACCCTGCGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * *
18492694 TTGAGACAAAATGGACTGTCATGCCAAGCTACCCAGCCATACTGCCT-TGCCAAAATTTGATTGA
66 TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG-CTATGCCAAAA-TTGATTGA
* * * * * * *
18492758 ATTCAAAATT-AGAGAATATTTTTATAAACAATC-AATTGGGAC-AAATGGACTGTTATGCCAAA
129 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
18492820 CT-----
194 CTACCCA
* * * *
18492822 GCC---CT----T-CCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTC-A
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *** *
18492878 ATTAGGACGAAATGGACTATCATGTTGAACTACCCAG-------GC-A----AAATTTGATTGAA
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAA
* * * * * *
18492931 TGCAAAATTAAGAGGACATTTTTATAAGTATTC-AATTGGGTCGAAATGTACTGTAATGTCAAAC
130 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
18492995 TACCCA
195 TACCCA
* * * * * *
18493001 GTCAAACTGCCCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAA
1 GCCAAACTACCCTGCCAAAATT-GATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
18493066 ATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGACT-TGCCAAAATTTGATTG
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG-CTATGCCAAAA-TTGATTG
* * * * * *
18493130 AATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGAAATTGACTGTCATGCCAA
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
*
18493195 ACTACCTA
193 ACTACCCA
* * *
18493203 G-CAAACTGA-CTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAA
1 GCCAAACT-ACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* ** * ** * * *
18493266 AATTGGGACGAAATGTACTGTCATGGGAACCTACCCAGCCAAACAACCATACCAAAATTGATGGA
64 AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGA
* *** *
18493331 ATGC-AAATTTA-A-GACATTTCTATATTTATTCAAATTGGGACGAAATTGAC--T--TG-C--A
129 ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAA
18493386 -T-----
194 CTACCCA
* *
18493387 GTCAAAC-AGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTC
1 GCCAAACTA-CCCTGCCAAAA-TTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTC
* * * * *
18493450 AAATTGGGATGAAATGGACTGTTATGCCAAACTACCCAACCAATCTG-TCCTGCCAAAATTTGAT
63 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCT-ATGCCAAAA-TTGAT
* * * *
18493514 TGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCC
126 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
*
18493579 AAACTACGCA
191 AAACTACCCA
** * * ** * * * * * * **
18493589 GCCAAA-T----TGCC-CTATCG---GGA-G-AAAATGGACA-GTCATGTCAAATTACCAAACCA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTC-TATAAGC-ATTCA
* * * * * * * * ** * * * *
18493642 AACTGCCTTGCCAAAATTGGATTG-AATGCAAAATTA-AGAG-GACATTTCTATAAG-CATTCAA
64 AATTG---GGACGAAA-TGGACTGTCATGCCAAACTACCCAGCCAAACTGCTAT--GCCA---AA
* * * ** * ** * * *** *
18493703 ATTGA--G-A--CGAAATT--GACTGTCATGCCAAACTACCCAGAT-AAACTGCCCTTCTAAAAT
120 ATTGATTGAATGCAAAATTAAGA-GGACATTTC-TA-TAAGCA-TTCAAATTG--GGAC-GAAA-
* * * * * **
18493760 TTGATTG-AACT-CAAAATTA-AAA
177 TGGACTGTCA-TGCCAAACTACCCA
* * * * ** * * *
18493782 G-TAGATTTCTATAAG-CATTTAAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCA
1 GCCAAACTACCCT--GCCA---AAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
*** ** * * * ** *
18493845 TTCAAATTTAAAAAAAATGGACTGTCATGCTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGG
60 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATT-G
* *
18493910 ATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTG
124 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
*
18493975 CCAAACTACCTA
189 CCAAACTACCCA
* ** * ** *
18493987 GCCAAACTGCCCTATCAAAATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAA
1 GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * * **
18494052 TTGGGATGAAATAGACTGTCATGCCAAACTACCAAACTAAATTGCCCTGCCAAAATTGATTGAAT
66 TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAAT
* * * ** * * * ** *
18494117 GCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACT
131 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
18494182 ACCCA
196 ACCCA
* * * * * * *
18494187 ACCAAACTGCCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * ** *
18494252 ATTGGGACAAAATGGACTGTCATGCCAAACTACCCAGCAAAACTATTCTGCC-AAATTGATTGAA
65 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAA
* * *
18494316 TGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGGA-GAAAATGGACTGTCATGCCAA
130 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACG-AAATGGACTGTCATGCCAA
*
18494380 ACTATCCA
193 ACTACCCA
* * * * * * * *
18494388 ACCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * *
18494453 ATTGGGA-TAGAATAGACTATCATGCCAAACTACCCAGCAAAATTGGC-CTGCCAAAATTGATTG
65 ATTGGGACGA-AATGGACTGTCATGCCAAACTACCCAGCCAAACT-GCTATGCCAAAATTGATTG
* *
18494516 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAA
128 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
*
18494581 ACGACCCA
193 ACTACCCA
* * *
18494589 GCCAAACTGCCCAGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTATAAGCATTCA
1 GCCAAACTACCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTC-TATAAGCATTCA
* * *
18494654 AATTTGGACGAAATGGACTGTTATACCAAA
64 AATTGGGACGAAATGGACTGTCATGCCAAA
18494684 TTGCCCTAGC
Statistics
Matches: 2785, Mismatches: 611, Indels: 421
0.73 0.16 0.11
Matches are distributed among these distances:
172 17 0.01
173 29 0.01
174 22 0.01
175 65 0.02
176 15 0.01
177 1 0.00
178 1 0.00
179 3 0.00
180 1 0.00
182 3 0.00
183 1 0.00
184 1 0.00
185 129 0.05
186 144 0.05
187 192 0.07
188 152 0.05
189 101 0.04
190 20 0.01
191 18 0.01
192 11 0.00
193 21 0.01
194 25 0.01
195 22 0.01
196 7 0.00
197 40 0.01
198 43 0.02
199 66 0.02
200 527 0.19
201 797 0.29
202 204 0.07
203 16 0.01
204 22 0.01
205 10 0.00
206 15 0.01
207 16 0.01
208 18 0.01
209 9 0.00
210 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (200 bp):
GCCAAACTACCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCTATGCCAAAATTGATTGAAT
GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT
ACCCA
Found at i:18492068 original size:100 final size:100
Alignment explanation
Indices: 18491567--18494683 Score: 1018
Period size: 100 Copynumber: 31.9 Consensus size: 100
18491557 CTGCCCGCCT
** * * * * *
18491567 AACTACCGAGCCAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATT
* * * * *
18491631 GGGACGAAGA-GGACAGTCATGCAAAAATACCCAACCA
64 AGGACGAA-ATGGACTGTCATGCCAAACTACCCAGCCA
* * * * ** *
18491668 AATTTCCTTGCCAAAATTTGATT-AATTGCAAATTAA-AATGACATTTCGATACA-CATTCAAAT
1 AACTACCCTGCCAATATTTGATTGAA-TAAAAATTAAGAA-GACATTTCTATA-AGCATTCAAAT
* *
18491730 TAGGATGAAATGGACTGTCATGCAAAACTACCCAGCCA
63 TAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * *
18491768 AACTTCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATT-
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
** * * *
18491831 GGTACGAAATTAACAGTCATACCAAACTACCCAGCTA
65 GG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * ** * * * *
18491868 AATTGCCCTGCCAATATTTGATTGTATGCAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAG
1 AACTACCCTGCCAATATTTGATTGAATAAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAG
* *
18491933 GACAAAATGGACTGTCAGGCCAAACTACCCAGCCA
66 GACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * *
18491968 AACAACCCTTCCAATATTTGATTGAATAAAAATTAAGAAGTCATTTCTATAAGTATT-ATAATTG
1 AACTACCCTGCCAATATTTGATTGAATAAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTA
* * *
18492032 GGATGAAATGGACTCTCATGCCAAACTACCCTGCCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* **** * ** * * * * * *
18492068 AAATTGATTGAACGCAA-ATTT-A-AG-AGGACATTTCTATAAG-CA-TTC-A-AATTG-GTACG
1 AACTACCCTG--C-CAATATTTGATTGAATAAAAATT-AAGAAGACATTTCTATAA--GCATTC-
* ** ** * * * *
18492124 AAA-T-GGAC--AAT-CA-TACCA-AACTACCCAGCCA---A
59 AAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * *
18492156 AC-TGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* ***
18492220 GGAAGAAATGGACTGTCATGCCAAACTATTGAGCCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * ** *
18492256 AAC-AGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-ATACT
1 AACTA-CCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCA-AAT
* *
18492319 TGGGACGAAATAGACTGTCATGCCAAACT----A-CC-
63 TAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * ** *
18492351 --C-A----GCCAATATTTGATTGAATGCAAAATTAA-AAGGACCTTTCTATAAATATTCTAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAA-GACATTTCTATAAGCATTCAAATT
* * * *
18492408 TGTACAAAATGGATTGTCATG-------A---A---A
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
** * * * * *
18492432 AACTTTCATGCCAA-AATTGATTGAATGAAAAATTAA-AATGGCATTTTTATAAGCATTAAAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAA-GACATTTCTATAAGCATTCAAATT
* ** *
18492495 GGGACGAAATTTACTGTCAAGCCAAACT-CCCAAGCCA
64 AGGACGAAATGGACTGTCATGCCAAACTACCC-AGCCA
* * * *
18492532 AACTACCCTACCAATATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
*
18492597 GGATGAAATGGACTGTCATGCCAAACTACCCAGCCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* ** * * *
18492633 AACAACCCTG-CGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATT-
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* *
18492696 GAGACAAAATGGACTGTCATGCCAAGCTACCCAGCCA
65 G-GACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * * *
18492733 TACTGCCTTGCCAAAATTTGATTGAATTCAAAATT-AG-AGAATATTTTTATAAACAATC-AATT
1 AACTACCCTGCCAATATTTGATTGAA-TAAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATT
* *
18492795 GGGAC-AAATGGACTGTTATGCCAAACT-----GCC-
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * *
18492825 --CT----T-CCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTC-AATTA
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* *
18492882 GGACGAAATGGACTATCATG------T----TG---
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * *
18492905 AACTACCCAGGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTC-AATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* * * * *
18492969 GGTCGAAATGTACTGTAATGTCAAACTACCCAGTCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * *
18493005 AACTGCCCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* * * *
18493070 GGATGAAATTGACTGTCATGCCAAACTACCTAGCAA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * *
18493106 AACTGA-CTTGCCAAAATTTGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATT
1 AACT-ACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATT
* * * *
18493170 GGGATGAAATTGACTGTCATGCCAAACTACCTAG-CA
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * *
18493206 AACTGA-CTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATT
1 AACT-ACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATT
* * ** *
18493270 GGGACGAAATGTACTGTCATGGGAACCTACCCAGCCA
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * ** * *** *
18493307 AACAACCATACCAA-AATTGATGGAATGCAAATT--TAAGACATTTCTATATTTATTCAAATTGG
1 AACTACCCTGCCAATATTTGATTGAATAAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAG
* *
18493369 GACGAAATTGAC--T--TG-C--A-T-----GTCA
66 GACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * *
18493391 AAC-AGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAAATT
1 AACTA-CCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATT
* * * *
18493455 GGGATGAAATGGACTGTTATGCCAAACTACCCAACCA
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* ** * * * *
18493492 ATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTA
1 AACTACCCTGCCAATATTTGATT-GAATAAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* *
18493557 GGACGAAATGTACTGTCATGCCAAACTACGCAGCCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * * * * **
18493593 AA-T----TGCC-CTA-TCG---GGA-GAAAA-T-GGACAGTCATGTCAAATTACCAAACCAAAC
1 AACTACCCTGCCAATATTTGATTGAATAAAAATTAAGA-AGACATTTC-TATAAGC-ATTCAAA-
* * * * * * * ** *
18493645 TGCCT-TGCCAAAATTGGATTG-AATGCAAAATTA-AGAGGACA
62 T---TAGGACGAAA-TGGACTGTCATGCCAAACTACCCA-GCCA
** *** *** ** * * ** * ** *
18493686 TTTCTA-TAAG-C-AT-TCAAATTGAGA-CGAAATT--GACTGTCATGCCAAACTACCCAGAT-A
1 -AACTACCCTGCCAATATTTGATTGA-ATAAAAATTAAGA-AGACATTTC-TA-TAAGCA-TTCA
* ** * * * * * * ** *
18493743 AACT-GCCCTTCTAAAATTTGATTG-AACT-CAAAATTA-AAAG-TA
60 AATTAG---GAC-GAAA-TGGACTGTCA-TGCCAAACTACCCAGCCA
* * * ** * * * *
18493785 GATTTCTATAAG-CATTTAAATTTAATTGAATGCAAAATTAAG-AGAAAATTTCTATAAGCATTC
1 AACTACCCT--GCCA---ATATTTGATTGAAT-AAAAATTAAGAAG-ACATTTCTATAAGCATTC
* ** *
18493848 AAATTTA-AAAAAAATGGACTGTCATGCTAAACTACCCAGCCA
59 AAA-TTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * *
18493890 AAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAA-AAGGACATTTCTATAAGCATTCAAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAA-GACATTTCTATAAGCATTCAAATT
* * *
18493954 GGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCA
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* ** * * * * * *
18493991 AACTGCCCTATCAA-AATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* * * * *
18494055 GGATGAAATAGACTGTCATGCCAAACTACCAAACTA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * ** *
18494091 AATTGCCCTGCCAA-AATTGATTGAATGCAAAATTATG-AGAACATTTTTATAAAAATTAAAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATT
* * * ** * *
18494154 GGGACAAAATGGACTGTTACACTAAACTACCCAACCA
64 AGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * * * *
18494191 AACTGCCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* *
18494256 GGACAAAATGGACTGTCATGCCAAACTACCCAGCAA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
** * * * * *
18494292 AACTATTCTGCCAA-A-TTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATT-
* *
18494355 AGGA-GAAAATGGACTGTCATGCCAAACTATCCAACCA
64 AGGACG-AAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * * * * * * *
18494392 AACTGCCCTACCAAAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* * * *
18494457 GGA-TAGAATAGACTATCATGCCAAACTACCCAGCAA
65 GGACGA-AATGGACTGTCATGCCAAACTACCCAGCCA
* ** * * * *
18494493 AATTGGCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTCTATAAGCATTCAAATTA
* * *
18494557 GGGCGAAATTGACTGTCATGCCAAACGACCCAGCCA
65 GGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * * *
18494593 AACTGCCCAGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTATAAGCATTCAAATT
1 AACTACCCTGCCAATATTTGATTGAAT-AAAAATTAAGAAGACATTTC-TATAAGCATTCAAATT
* * *
18494658 TGGACGAAATGGACTGTTATACCAAA
64 AGGACGAAATGGACTGTCATGCCAAA
18494684 TTGCCCTAGC
Statistics
Matches: 2322, Mismatches: 506, Indels: 375
0.72 0.16 0.12
Matches are distributed among these distances:
81 1 0.00
82 4 0.00
83 2 0.00
84 17 0.01
85 36 0.02
86 30 0.01
87 138 0.06
88 110 0.05
89 14 0.01
90 16 0.01
91 11 0.00
92 10 0.00
93 27 0.01
94 14 0.01
95 5 0.00
96 15 0.01
97 47 0.02
98 28 0.01
99 81 0.03
100 843 0.36
101 714 0.31
102 105 0.05
103 14 0.01
104 4 0.00
105 9 0.00
106 14 0.01
107 9 0.00
108 3 0.00
109 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (100 bp):
AACTACCCTGCCAATATTTGATTGAATAAAAATTAAGAAGACATTTCTATAAGCATTCAAATTAG
GACGAAATGGACTGTCATGCCAAACTACCCAGCCA
Found at i:18492118 original size:87 final size:86
Alignment explanation
Indices: 18491964--18492156 Score: 217
Period size: 87 Copynumber: 2.2 Consensus size: 86
18491954 AAACTACCCA
* * * * * *
18491964 GCCAAACAACCCTTCCAATATTTGATTGAATAAAAATTAAGAAGTCATTTCTATAAGTATTATAA
1 GCCAAACTACCCTGCCAA-AATTGATTGAAGAAAAATTAAGAAGACATTTCTATAAGCATTATAA
* **
18492029 TTGGGATGAAATGGACTCTCAT
65 TTGGGACGAAATGGACAATCAT
* * *
18492051 GCCAAACTACCCTGCCAAAATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCA-A
1 GCCAAACTACCCTGCCAAAATTGATTGAA-GAAAAATTAAGAAGACATTTCTATAAGCATT-ATA
*
18492115 ATTGGTACGAAATGGACAATCAT
64 ATTGGGACGAAATGGACAATCAT
* *
18492138 ACCAAACTACCCAGCCAAA
1 GCCAAACTACCCTGCCAAA
18492157 CTGCCCTGCC
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
86 10 0.11
87 78 0.88
88 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (86 bp):
GCCAAACTACCCTGCCAAAATTGATTGAAGAAAAATTAAGAAGACATTTCTATAAGCATTATAAT
TGGGACGAAATGGACAATCAT
Found at i:18492532 original size:87 final size:86
Alignment explanation
Indices: 18492273--18492533 Score: 245
Period size: 87 Copynumber: 3.0 Consensus size: 86
18492263 CTGCCAATGT
* ** *
18492273 TTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATTATACTTGGGACGAAATAGACTGTC
1 TTGATTGAATGCAAAATTAA-AAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
18492338 ATGCCAAACTACCC-AGCCAATAT
65 ATGCCAAACT-CCCAAGCCAA-AA
* ** * * * * * *
18492361 TTGATTGAATGCAAAATTAAAAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTC
1 TTGATTGAATGCAAAATTAAAAGG-CATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
** ** *
18492426 ATGAAAAACTTTCATGCCAAAA
65 ATGCCAAACTCCCAAGCCAAAA
* * * **
18492448 TTGATTGAATGAAAAATTAAAATGGCATTTTTATAAGCATTAAAATTGGGACGAAATTTACTGTC
1 TTGATTGAATGCAAAATTAAAA-GGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
18492513 AAGCCAAACTCCCAAGCCAAA
65 ATGCCAAACTCCCAAGCCAAA
18492534 CTACCCTACC
Statistics
Matches: 132, Mismatches: 38, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
87 69 0.52
88 63 0.48
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (86 bp):
TTGATTGAATGCAAAATTAAAAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTCA
TGCCAAACTCCCAAGCCAAAA
Found at i:18492623 original size:101 final size:101
Alignment explanation
Indices: 18492442--18494683 Score: 1469
Period size: 101 Copynumber: 22.8 Consensus size: 101
18492432 AACTTTCATG
* * * *
18492442 CCAAAA-TTGATTGAATGAAAAATTAAAATGG-CATTTTTATAAGCATTAAAATTGGGACGAAAT
1 CCAAAATTTGATTGAATGCAAAATTAAGA-GGACATTTCTATAAGCATTCAAATTGGGACGAAAT
** * *
18492505 TTACTGTCAAGCCAAACT-CCCAAGCCAAACTACCCTA
65 GGACTGTCATGCCAAACTACCC-AGCCAAACTGCCCTA
* * *
18492542 CCAATATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
**
18492607 GACTGTCATGCCAAACTACCCAGCCAAACAACCCT-
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* *** * * *
18492642 GCGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGAGACAAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * *
18492707 GACTGTCATGCCAAGCTACCCAGCCATACTGCCTTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * *
18492743 CCAAAATTTGATTGAATTCAAAATT-AGAGAATATTTTTATAAACAATC-AATTGGGAC-AAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
*
18492805 GACTGT--T-----A-T-----GCCAAACTGCCCTT
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * *
18492828 CCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTC-AATTAGGACGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* ***
18492892 GACTATCATGTTGAACTACCCAG-------G-----
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *
18492916 -CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTC-AATTGGGTCGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
18492979 TACTGTAATGTCAAACTACCCAGTCAAACTGCCCTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * *
18493015 CCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGAAATT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
18493080 GACTGTCATGCCAAACTACCTAGCAAAACTGACTTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * *
18493116 CCAAAATTTGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGAAATT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * *
18493181 GACTGTCATGCCAAACTACCTAG-CAAACTGACTTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* *
18493216 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* ** * ** *
18493281 TACTGTCATGGGAACCTACCCAGCCAAACAACCATA
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *** *
18493317 CCAAAA-TTGATGGAATGC-AAATTTA-A-GACATTTCTATATTTATTCAAATTGGGACGAAATT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
*
18493378 GACT-TGCATGTC-AA--A--CAGCC---CTG-----
66 GACTGT-CATGCCAAACTACCCAGCCAAACTGCCCTA
* *
18493401 CCAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAATTGGGATGAAAT
1 CCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
18493465 GGACTGTTATGCCAAACTACCCAACCAATCTGTCCTG
65 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *
18493502 CCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * *
18493567 TACTGTCATGCCAAACTACGCAGCCAAATTGCCCTA
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * ** * ** * *
18493603 TCGGGAGAAAATGGACAGTCATGTC-AAATTACCA--A-A---CCA-AACTGCCTTGCCAAAATT
1 -C--CA-AAATTTGATTG-AATG-CAAAATTAAGAGGACATTTCTATAA--GCATT--C-AAATT
* * * * ** * ** ** * **
18493660 GGATTGAATGCAAAATTAAGA-GGACATTTC-TA-TAAGCATTCAAATTG--AGA
55 GG---G-A--CGAAA-T-GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * * **
18493710 -CGAAA-TTGACTGTCATGCCAAACTACCCAGA-TAAACTGCCCTTCTA-AA--ATT-TGATT-G
1 CCAAAATTTGATTG-AATGCAAAATTA---AGAGGACA-T----TTCTATAAGCATTCAAATTGG
* * * ***** *
18493767 AACTCAAA---A-T-T-A----AAAGTAGATTTCTATAA--G--C-A
57 GAC-GAAATGGACTGTCATGCCAAACTACCCAGCCA-AACTGCCCTA
*** * * * *** **
18493799 TTTAAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * *
18493864 GACTGTCATGCTAAACTACCCAGCCAAAATTCCCTT
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* *
18493900 CCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* *
18493965 GACTGTCTTGCCAAACTACCTAGCCAAACTGCCCTA
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * ** * * *
18494001 TCAAAA-TTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAAATA
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * * *
18494065 GACTGTCATGCCAAACTACCAAACTAAATTGCCCTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * ** * *
18494101 CCAAAA-TTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* ** * * * *
18494165 GACTGTTACACTAAACTACCCAACCAAACTGCCTTT
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * *
18494201 CCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACAAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* *** *
18494266 GACTGTCATGCCAAACTACCCAGCAAAACTATTCTG
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *
18494302 CC-AAA-TTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGGA-GAAAA
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACG-AAA
* *
18494364 TGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTA
64 TGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * *
18494402 CCAAAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TAGAAT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AAT
* * * * * *
18494466 AGACTATCATGCCAAACTACCCAGCAAAATTGGCCTG
65 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* *
18494503 CCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATT
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
*
18494567 GACTGTCATGCCAAACGACCCAGCCAAACTGCCC-A
66 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* *
18494602 GACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTATAAGCATTCAAATTTGGACGAAA
1 -CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC-TATAAGCATTCAAATTGGGACGAAA
* *
18494667 TGGACTGTTATACCAAA
64 TGGACTGTCATGCCAAA
18494684 TTGCCCTAGC
Statistics
Matches: 1694, Mismatches: 324, Indels: 246
0.75 0.14 0.11
Matches are distributed among these distances:
83 5 0.00
84 8 0.00
85 44 0.03
86 33 0.02
87 93 0.05
88 44 0.03
89 6 0.00
90 16 0.01
91 11 0.01
92 8 0.00
93 7 0.00
94 3 0.00
95 2 0.00
96 8 0.00
97 44 0.03
98 12 0.01
99 59 0.03
100 555 0.33
101 583 0.34
102 86 0.05
103 2 0.00
104 9 0.01
105 9 0.01
106 13 0.01
107 3 0.00
108 1 0.00
109 12 0.01
110 7 0.00
111 6 0.00
112 1 0.00
114 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
Found at i:18492920 original size:87 final size:87
Alignment explanation
Indices: 18492744--18493006 Score: 244
Period size: 87 Copynumber: 3.0 Consensus size: 87
18492734 ACTGCCTTGC
* * * * * * *
18492744 CAAAATTTGATTGAATTCAAAATT-AG-AGAATATTTTTATAAACAATCAATTGGGAC-AAATGG
1 CAAAATTTGATGGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAATTAGGACGAAATGG
* * * * ***
18492806 ACTGTTATGCCAAACTGCCCTTC
65 ACTATAATGTCAAACTACCCAGG
* *
18492829 CAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAATTAGGACGAAATGGA
1 CAAAATTTGATGGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTAGGACGAAATGGA
* **
18492894 CTATCATGTTGAACTACCCAGG
66 CTATAATGTCAAACTACCCAGG
* * * * * * *
18492916 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTCAATTGGGTCGAAATGTA
1 CAAAATTTGATGGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTAGGACGAAATGGA
* *
18492981 CTGTAATGTCAAACTACCCAGT
66 CTATAATGTCAAACTACCCAGG
18493003 CAAA
1 CAAA
18493007 CTGCCCTGCC
Statistics
Matches: 143, Mismatches: 32, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
85 21 0.15
86 23 0.16
87 99 0.69
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (87 bp):
CAAAATTTGATGGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTAGGACGAAATGGA
CTATAATGTCAAACTACCCAGG
Found at i:18493481 original size:88 final size:84
Alignment explanation
Indices: 18493303--18493469 Score: 199
Period size: 88 Copynumber: 1.9 Consensus size: 84
18493293 AACCTACCCA
* ***
18493303 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTTAAGACATTTCTATATTTATTCAAATTG
1 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
*
18493368 GGACGAAATTGACTTGCAT
66 GGACGAAATGGACTTGCAT
* * * * *
18493387 GTCAAACAGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAA
1 GCCAAACAACCATACCAAAA-TTGATGGAATGC-AAATTAA--AGACATTTCTATAAGGATTCAA
*
18493452 ATTGGGATGAAATGGACT
62 ATTGGGACGAAATGGACT
18493470 GTTATGCCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 16 0.24
85 11 0.16
86 6 0.09
88 35 0.51
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (84 bp):
GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
GGACGAAATGGACTTGCAT
Found at i:18493732 original size:150 final size:150
Alignment explanation
Indices: 18493461--18493735 Score: 421
Period size: 150 Copynumber: 1.8 Consensus size: 150
18493451 AATTGGGATG
* * * * * * *
18493461 AAATGGACTGTTATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAAT
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
18493526 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
66 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
18493591 CAAATTGCCCTATCGGGAGA
131 CAAATTGCCCTATCGGGAGA
* *
18493611 AAATGGACAGTCATGTCAAATTACCAAACCAAACTG-CCTTGCCAAAATTGGATTGAATGCAAAA
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCC-TGCCAAAATTGGATTGAATGCAAAA
18493675 TTAAGAGGACATTTCTATAAGCATTCAAATT-GAGACGAAAT-TGACTGTCATGCCAAACTAC
65 TTAAGAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATGT-ACTGTCATGCCAAACTAC
18493736 CCAGATAAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
149 4 0.04
150 109 0.96
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (150 bp):
AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
CAAATTGCCCTATCGGGAGA
Found at i:18493813 original size:46 final size:46
Alignment explanation
Indices: 18493756--18493855 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
18493746 TGCCCTTCTA
* * * *
18493756 AAATTTGATTGAACT-CAAAATTAAAAGTAGATTTCTATAAGCATTT
1 AAATTTAATTGAA-TGCAAAATTAAAAGAAAATTTCTATAAGCATTC
*
18493802 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
18493848 AAATTTAA
1 AAATTTAA
18493856 AAAAAATGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
Found at i:18493868 original size:147 final size:147
Alignment explanation
Indices: 18493662--18493953 Score: 415
Period size: 147 Copynumber: 2.0 Consensus size: 147
18493652 CCAAAATTGG
* * * ** *
18493662 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * * * * *
18493727 CCAAACTACCCAGATAAACTGCCCTTCTAAAATTTGATTGAACT-CAAAATTAAAAGTAGATTTC
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAA-TGCAAAATTAAAAGGACATTTC
*
18493791 TATAAGCATTTAAATTTA
130 TATAAGCATTCAAATTTA
*
18493809 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * *
18493874 CTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
18493939 ATAAGCATTCAAATT
131 ATAAGCATTCAAATT
18493954 GGGACGAAAT
Statistics
Matches: 127, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
146 1 0.01
147 126 0.99
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.29
Consensus pattern (147 bp):
ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
ATAAGCATTCAAATTTA
Found at i:18494372 original size:301 final size:300
Alignment explanation
Indices: 18493802--18494683 Score: 1044
Period size: 301 Copynumber: 2.9 Consensus size: 300
18493792 ATAAGCATTT
* * * * * ***
18493802 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGAC
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
* * *
18493867 TGTCATGCTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGA
66 TGTCATGCTAAACTACCCAGCCAAAA-TGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* *
18493932 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCAAACTGC
130 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGC
* * * *
18493997 CCTATCAAAATTGATTGAATGCAAAGTTAAGA--AAACATTTCTATAAGCATTAAAATTGGGATG
195 CCT-GCAAAATTGATTGAATGCAAAATTAAGAGGAAAC--TTCTATAAGCATTCAAATTGGGACG
* * * *
18494060 AAATAGACTGTCATGCCAAACTA-CCAAACTAAATTGCCCTGCCA
257 AAATGGACTGTCATGCCAAACTATCC-AACCAAACTGCCCTACCA
** *
18494104 AAA-TTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
* ** * * *
18494168 TGTTACACTAAACTACCCAACCAAACTGCCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGA
66 TGTCATGCTAAACTACCCAGCCAAAATGCC-TTCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * * * **
18494233 CATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAGCAAAACTAT
130 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGC
* * *
18494298 TCTGCCAAATTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGGA-GAA
195 CCTGCAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCTATAAGCATTCAAATTG-GGACG-A
18494362 AATGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
258 AATGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
* ** * * * *
18494405 AAATTTGATTGAATGCAAAATT-TAGAGGACACTGCTT-TAAGCATTTAAATTGGGATAGAATAG
1 AAATTTGATTGAATGCAAAATTAT-GAGAACA-TTTTTATAAGCATTAAAATTGGGAAAAAATGG
* * *
18494468 ACTATCATGCCAAACTACCCAG-CAAAATTGGCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA
64 ACTGTCATGCTAAACTACCCAGCCAAAA-T-GCCTTCCAAAATTTGATTGAATGCAAAATTAAGA
* * *
18494531 GGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAAC
127 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
* * * *
18494596 TGCCCAGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTATAAGCATTCAAATTTGG
192 TGCCCTG-CAAAA-TTGATTGAATGCAAAATTAAGAGGAAACTTC-TATAAGCATTCAAATTGGG
* *
18494661 ACGAAATGGACTGTTATACCAAA
254 ACGAAATGGACTGTCATGCCAAA
18494684 TTGCCCTAGC
Statistics
Matches: 491, Mismatches: 74, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
300 47 0.10
301 291 0.59
302 81 0.16
303 56 0.11
304 16 0.03
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (300 bp):
AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
TGTCATGCTAAACTACCCAGCCAAAATGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGGAC
ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCC
CTGCAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
Found at i:18516511 original size:17 final size:17
Alignment explanation
Indices: 18516489--18516538 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
18516479 TCCCAGATTT
18516489 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
*
18516506 TGATACCTATATCTTTC
1 TGATACCCATATCTTTC
18516523 TGATACCCATATCTTT
1 TGATACCCATATCTTT
18516539 GACTTTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:18518837 original size:40 final size:40
Alignment explanation
Indices: 18518788--18518982 Score: 164
Period size: 40 Copynumber: 4.9 Consensus size: 40
18518778 CGGAATTTAA
** * *
18518788 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
18518828 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * **
18518868 CCGGATTTAGTAACTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * **
18518908 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * *
18518948 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGAC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
18518983 TGAGCTCGGA
Statistics
Matches: 135, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 120 0.89
41 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:18536486 original size:17 final size:17
Alignment explanation
Indices: 18536464--18536499 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
18536454 AAATCCCAGA
18536464 TTCTGATACCCATATCT
1 TTCTGATACCCATATCT
18536481 TTCTGATACCCATATCT
1 TTCTGATACCCATATCT
18536498 TT
1 TT
18536500 GACTTTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.44
Consensus pattern (17 bp):
TTCTGATACCCATATCT
Found at i:18541324 original size:47 final size:47
Alignment explanation
Indices: 18541174--18541646 Score: 732
Period size: 47 Copynumber: 10.1 Consensus size: 47
18541164 CCCTTCGGGA
* * * * * * *
18541174 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18541221 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18541267 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18541314 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18541361 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18541408 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18541455 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
18541502 CTTATCACACATATACACTTTCACATTCATCACACCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18541549 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18541596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18541643 CTTA
1 CTTA
18541647 GTATCATTTC
Statistics
Matches: 396, Mismatches: 29, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
46 40 0.10
47 356 0.90
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18548050 original size:14 final size:14
Alignment explanation
Indices: 18548024--18548057 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
18548014 ATATTTATGG
18548024 TTTTTTTCTTTCTT
1 TTTTTTTCTTTCTT
18548038 TTATTTTTC-TTCTT
1 TT-TTTTTCTTTCTT
18548052 TTTTTT
1 TTTTTT
18548058 GAATGGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 9 0.47
15 6 0.32
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTTCTTTCTT
Found at i:18548057 original size:18 final size:17
Alignment explanation
Indices: 18548024--18548056 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18548014 ATATTTATGG
18548024 TTTTTTTCTTTCTTTTA
1 TTTTTTTCTTTCTTTTA
18548041 TTTTTCTTCTTT-TTTT
1 TTTTT-TTCTTTCTTTT
18548057 TGAATGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTCTTTCTTTTA
Found at i:18565766 original size:22 final size:22
Alignment explanation
Indices: 18565740--18565784 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
18565730 ATTATATGTA
18565740 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
18565762 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
18565784 T
1 T
18565785 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:18566422 original size:21 final size:21
Alignment explanation
Indices: 18566392--18566435 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
18566382 ATTTAATCAA
*
18566392 TTTAGCTTGAATTTAA-TTCGT
1 TTTAGCTTG-ATTGAATTTCGT
*
18566413 TTTAGGTTGATTGAATTTCGT
1 TTTAGCTTGATTGAATTTCGT
18566434 TT
1 TT
18566436 GTTAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.55
Consensus pattern (21 bp):
TTTAGCTTGATTGAATTTCGT
Found at i:18573121 original size:16 final size:16
Alignment explanation
Indices: 18573100--18573130 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
18573090 ATTATAGGAG
18573100 ATACTTTTAATTTTTC
1 ATACTTTTAATTTTTC
18573116 ATACTTTTAATTTTT
1 ATACTTTTAATTTTT
18573131 ATTGTCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (16 bp):
ATACTTTTAATTTTTC
Found at i:18575107 original size:36 final size:36
Alignment explanation
Indices: 18575067--18575136 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
18575057 AGTCGATGTA
*
18575067 CTCTTATAAGCATTTGGTGCGTTTCGGATGGATTAG
1 CTCTTATAAGCATCTGGTGCGTTTCGGATGGATTAG
* * * *
18575103 CTCTTATGAGCATCTGGTGTGTTTTGGTTGGATT
1 CTCTTATAAGCATCTGGTGCGTTTCGGATGGATT
18575137 GTCGATGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.43
Consensus pattern (36 bp):
CTCTTATAAGCATCTGGTGCGTTTCGGATGGATTAG
Found at i:18576064 original size:12 final size:12
Alignment explanation
Indices: 18576047--18576072 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18576037 TATGTTTATG
18576047 ATATTGAATAAA
1 ATATTGAATAAA
18576059 ATATTGAATAAA
1 ATATTGAATAAA
18576071 AT
1 AT
18576073 TAAGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
ATATTGAATAAA
Found at i:18583883 original size:36 final size:36
Alignment explanation
Indices: 18583836--18583918 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
18583826 TCTCTGTTTC
*
18583836 GGTGTGTTTCGATTAGACTAGCTCTT-CGAAGCCATT
1 GGTGTGTTTCGAATAGACTAGCTCTTACG-AGCCATT
* * *
18583872 GGTGTGTTTCGAATAGATTAGCTCTTATGAGCCTTT
1 GGTGTGTTTCGAATAGACTAGCTCTTACGAGCCATT
18583908 GGTGTGTTTCG
1 GGTGTGTTTCG
18583919 GATGGATAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 41 0.98
37 1 0.02
ACGTcount: A:0.17, C:0.16, G:0.28, T:0.40
Consensus pattern (36 bp):
GGTGTGTTTCGAATAGACTAGCTCTTACGAGCCATT
Found at i:18583933 original size:36 final size:36
Alignment explanation
Indices: 18583865--18583952 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 36
18583855 AGCTCTTCGA
* *
18583865 AGCCATTGGTGTGTTTCGAATAGATTAGCTCTTATG
1 AGCCATTGGTGTGTTTCGAATAGATAAACTCTTATG
* * *
18583901 AGCCTTTGGTGTGTTTCGGATGGATAAACTCTTATG
1 AGCCATTGGTGTGTTTCGAATAGATAAACTCTTATG
*
18583937 AG-CATCTAGTGTGTTT
1 AGCCAT-TGGTGTGTTT
18583953 TGGTTGGATT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 2 0.05
36 42 0.95
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.40
Consensus pattern (36 bp):
AGCCATTGGTGTGTTTCGAATAGATAAACTCTTATG
Found at i:18583961 original size:36 final size:36
Alignment explanation
Indices: 18583873--18583961 Score: 97
Period size: 36 Copynumber: 2.5 Consensus size: 36
18583863 GAAGCCATTG
* * * * * * *
18583873 GTGTGTTTCGAATAGATTAGCTCTTATGAGCCTTTG
1 GTGTGTTTCGGATGGATAAACTCTTATGAGCATCTA
18583909 GTGTGTTTCGGATGGATAAACTCTTATGAGCATCTA
1 GTGTGTTTCGGATGGATAAACTCTTATGAGCATCTA
* *
18583945 GTGTGTTTTGGTTGGAT
1 GTGTGTTTCGGATGGAT
18583962 TGTCGATGTA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.19, C:0.11, G:0.28, T:0.42
Consensus pattern (36 bp):
GTGTGTTTCGGATGGATAAACTCTTATGAGCATCTA
Found at i:18587342 original size:55 final size:56
Alignment explanation
Indices: 18587279--18587386 Score: 182
Period size: 55 Copynumber: 1.9 Consensus size: 56
18587269 TTTTACAAAA
*
18587279 AATGAGATATTATAGGATATTATTATG-GATATTATCTCTTAGCAATTTGATTCAT
1 AATGAGATATTATAGGATATTATTATGAGATATTACCTCTTAGCAATTTGATTCAT
* *
18587334 AATGAGATATTATATGATATTATTATGAGATATTACCTTTTAGCAATTTGATT
1 AATGAGATATTATAGGATATTATTATGAGATATTACCTCTTAGCAATTTGATT
18587387 TCTAAGTAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 26 0.53
56 23 0.47
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.44
Consensus pattern (56 bp):
AATGAGATATTATAGGATATTATTATGAGATATTACCTCTTAGCAATTTGATTCAT
Found at i:18588107 original size:20 final size:19
Alignment explanation
Indices: 18588070--18588120 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
18588060 TCTATAACCG
18588070 AATAATGTT-TATTAAAAAAT
1 AATAAT-TTATATT-AAAAAT
*
18588090 AA-AATTGTATATTTAAAAT
1 AATAATT-TATATTAAAAAT
18588109 AATAATTTATAT
1 AATAATTTATAT
18588121 AATATGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 10 0.37
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (19 bp):
AATAATTTATATTAAAAAT
Found at i:18588639 original size:39 final size:39
Alignment explanation
Indices: 18588565--18588650 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
18588555 AAGTATTTAG
** *
18588565 TTACAAAGTTAGGTTTCCAATAAAAAATTTGATATTTGA
1 TTACAAAAATAGGTTTCCAATAAAAAATTTAATATTTGA
* * * *
18588604 TTATAAAAATAGGTTTCCAA-AAGTAATTTTAATATTTGG
1 TTACAAAAATAGGTTTCCAATAA-AAAATTTAATATTTGA
18588643 TTACAAAA
1 TTACAAAA
18588651 GGTTTTCAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
38 2 0.05
39 36 0.95
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (39 bp):
TTACAAAAATAGGTTTCCAATAAAAAATTTAATATTTGA
Found at i:18589336 original size:21 final size:22
Alignment explanation
Indices: 18589307--18589381 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
18589297 ACTAATAATT
18589307 AAAAT-TAAATTTTAAAATTT-
1 AAAATATAAATTTTAAAATTTA
* *
18589327 GAAATATAAAAATTTAAAATTTA
1 AAAATAT-AAATTTTAAAATTTA
* * *
18589350 AAAATAAAAATTTAAAAAAATTTC
1 AAAATATAAATTT--TAAAATTTA
18589374 AAAATATA
1 AAAATATA
18589382 CGGGCTTAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 18 0.43
23 5 0.12
24 14 0.33
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (22 bp):
AAAATATAAATTTTAAAATTTA
Found at i:18589338 original size:15 final size:15
Alignment explanation
Indices: 18589320--18589381 Score: 54
Period size: 15 Copynumber: 4.0 Consensus size: 15
18589310 ATTAAATTTT
*
18589320 AAAATTTGAAATATA
1 AAAATTTAAAATATA
*
18589335 AAAATTTAAAATTTA
1 AAAATTTAAAATATA
* *
18589350 AAAA-TAAAAATTTAAA
1 AAAATTTAAAA--TATA
18589366 AAAATTTCAAAATATA
1 AAAATTT-AAAATATA
18589382 CGGGCTTAGG
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
14 5 0.14
15 17 0.47
16 9 0.25
17 1 0.03
18 4 0.11
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
AAAATTTAAAATATA
Found at i:18589345 original size:7 final size:7
Alignment explanation
Indices: 18589305--18589366 Score: 63
Period size: 7 Copynumber: 8.9 Consensus size: 7
18589295 ATACTAATAA
18589305 TTAAAA-
1 TTAAAAT
*
18589311 TTAAATT
1 TTAAAAT
18589318 TTAAAAT
1 TTAAAAT
*
18589325 TTGAAAT
1 TTAAAAT
*
18589332 ATAAAAAT
1 -TTAAAAT
18589340 TTAAAAT
1 TTAAAAT
*
18589347 TTAAAAA
1 TTAAAAT
*
18589354 TAAAAAT
1 TTAAAAT
18589361 TTAAAA
1 TTAAAA
18589367 AAATTTCAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
6 5 0.11
7 34 0.77
8 5 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (7 bp):
TTAAAAT
Found at i:18589365 original size:8 final size:8
Alignment explanation
Indices: 18589313--18589367 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
18589303 AATTAAAATT
*
18589313 AAATTTTA
1 AAATTTAA
*
18589321 AAATTT-G
1 AAATTTAA
*
18589328 AAATATAA
1 AAATTTAA
18589336 AAATTT-A
1 AAATTTAA
18589343 AAATTTAA
1 AAATTTAA
18589351 AAA--TAA
1 AAATTTAA
18589357 AAATTTAA
1 AAATTTAA
18589365 AAA
1 AAA
18589368 AATTTCAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 6 0.15
7 12 0.31
8 21 0.54
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (8 bp):
AAATTTAA
Found at i:18589367 original size:14 final size:15
Alignment explanation
Indices: 18589313--18589367 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
18589303 AATTAAAATT
* **
18589313 AAATTTTAAAATTTG
1 AAATTTAAAAATTAA
* *
18589328 AAATATAAAAATTTA
1 AAATTTAAAAATTAA
18589343 AAATTTAAAAA-TAA
1 AAATTTAAAAATTAA
18589357 AAATTTAAAAA
1 AAATTTAAAAA
18589368 AATTTCAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 13 0.37
15 22 0.63
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
AAATTTAAAAATTAA
Found at i:18590198 original size:27 final size:28
Alignment explanation
Indices: 18590151--18590206 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
18590141 TAAATTCAAG
18590151 ATATTTATAAAAATTCCAAAA-ATTATAT
1 ATATTTATAAAAATTCCAAAAGA-TATAT
*
18590179 ATATTT-TAAAAATTCTAAAAGATATAT
1 ATATTTATAAAAATTCCAAAAGATATAT
18590206 A
1 A
18590207 AAAAAGTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (28 bp):
ATATTTATAAAAATTCCAAAAGATATAT
Found at i:18596240 original size:128 final size:128
Alignment explanation
Indices: 18596012--18596267 Score: 494
Period size: 128 Copynumber: 2.0 Consensus size: 128
18596002 TTAATTTTAA
*
18596012 AAGGAATATACCAAAAACTTTCATGCCAAGAGTTTGAATAAACTAAGTAAAATTTCTTTAAAAAG
1 AAGGAATATACCAAAAACTTTCATGCCAAGAGTTTGAATAAACCAAGTAAAATTTCTTTAAAAAG
18596077 GGTGATTTGTTTACGGTAACGAGGCTAAATTTGGCAGTGAAGAAAGGTGTTAGGACCTACTAC
66 GGTGATTTGTTTACGGTAACGAGGCTAAATTTGGCAGTGAAGAAAGGTGTTAGGACCTACTAC
*
18596140 AAGGAATATACTAAAAACTTTCATGCCAAGAGTTTGAATAAACCAAGTAAAATTTCTTTAAAAAG
1 AAGGAATATACCAAAAACTTTCATGCCAAGAGTTTGAATAAACCAAGTAAAATTTCTTTAAAAAG
18596205 GGTGATTTGTTTACGGTAACGAGGCTAAATTTGGCAGTGAAGAAAGGTGTTAGGACCTACTAC
66 GGTGATTTGTTTACGGTAACGAGGCTAAATTTGGCAGTGAAGAAAGGTGTTAGGACCTACTAC
18596268 GTCCTTTTTT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 126 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.28
Consensus pattern (128 bp):
AAGGAATATACCAAAAACTTTCATGCCAAGAGTTTGAATAAACCAAGTAAAATTTCTTTAAAAAG
GGTGATTTGTTTACGGTAACGAGGCTAAATTTGGCAGTGAAGAAAGGTGTTAGGACCTACTAC
Found at i:18597119 original size:17 final size:18
Alignment explanation
Indices: 18597099--18597138 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
18597089 TGTAATAATT
*
18597099 TTATATATTTTTATTTA-
1 TTATATATTTTTATATAG
18597116 TTATA-ATTTTTATATAG
1 TTATATATTTTTATATAG
18597133 TTATAT
1 TTATAT
18597139 TAACATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
TTATATATTTTTATATAG
Found at i:18601205 original size:16 final size:16
Alignment explanation
Indices: 18601182--18601237 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
18601172 CGTTTGGTTC
18601182 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
* **
18601198 GTTGTAATTAAATAGA
1 GCTGTAATGGAATAGA
*
18601214 ACTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
18601230 GCTGTAAT
1 GCTGTAAT
18601238 AAGTAATTCA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:18601424 original size:133 final size:134
Alignment explanation
Indices: 18601184--18601456 Score: 404
Period size: 133 Copynumber: 2.0 Consensus size: 134
18601174 TTTGGTTCGC
* * *
18601184 TGTAATGGAATAGAGTTGTAATTAAATAGAACTGTAATGGAATAGAGCTGTAATAAGTAATTCAA
1 TGTAATGGAATAGAGCTCTAATTAAATAGAACTGTAATGGAATAGAGCTATAATAAGTAATTCAA
* * *
18601249 TTATTTGGTTGAATAGAATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGGAAT-G
66 TTATTTGGTTGAATAGAATGAAATAGAACTGTAATAGAATTCTTGTGTTTGGTTGAACGGAATAG
18601313 ATGT
131 ATGT
* * * * *
18601317 TGTAATGGAATAGGGCTCTAATTGAATAGAATTGTAATGGGATAGAGCTATAATCAGTAATTCAA
1 TGTAATGGAATAGAGCTCTAATTAAATAGAACTGTAATGGAATAGAGCTATAATAAGTAATTCAA
* **
18601382 TTATTTGGTTGAATGGAATGAAATAGAGTTGTAATAGAATTCTTGTGTTTGGTTGAACGGAATAG
66 TTATTTGGTTGAATAGAATGAAATAGAACTGTAATAGAATTCTTGTGTTTGGTTGAACGGAATAG
18601447 ATGT
131 ATGT
*
18601451 CGTAAT
1 TGTAAT
18601457 AGTATAAGAA
Statistics
Matches: 124, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
133 114 0.92
134 10 0.08
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (134 bp):
TGTAATGGAATAGAGCTCTAATTAAATAGAACTGTAATGGAATAGAGCTATAATAAGTAATTCAA
TTATTTGGTTGAATAGAATGAAATAGAACTGTAATAGAATTCTTGTGTTTGGTTGAACGGAATAG
ATGT
Found at i:18601551 original size:25 final size:26
Alignment explanation
Indices: 18601517--18601568 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18601507 TAGGTAGATG
*
18601517 ATTATTGTT-ATTAAATTTTAATAAA
1 ATTATTGTTAAATAAATTTTAATAAA
*
18601542 ATTATTGTTAAATATATTTTAATAAA
1 ATTATTGTTAAATAAATTTTAATAAA
18601568 A
1 A
18601569 ATAAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
ATTATTGTTAAATAAATTTTAATAAA
Found at i:18601592 original size:55 final size:57
Alignment explanation
Indices: 18601526--18601639 Score: 151
Period size: 55 Copynumber: 2.0 Consensus size: 57
18601516 GATTATTGTT
* * * *
18601526 ATTAAATTTTAATAAAATTATTGTTAAATATATTTTAAT-AAA-AATAAATAATTTA
1 ATTAAATTTTAACAAAATTATTATTAAATACAATTTAATAAAATAATAAATAATTTA
* * *
18601581 ATTATATTTTAACATAATTATTATTAAATACAATTTAATAAAATAATATATAATTTA
1 ATTAAATTTTAACAAAATTATTATTAAATACAATTTAATAAAATAATAAATAATTTA
18601638 AT
1 AT
18601640 AGCATTCCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 33 0.66
56 3 0.06
57 14 0.28
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (57 bp):
ATTAAATTTTAACAAAATTATTATTAAATACAATTTAATAAAATAATAAATAATTTA
Found at i:18601678 original size:13 final size:13
Alignment explanation
Indices: 18601660--18601693 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
18601650 ATATAATTAT
18601660 TAATAATATTTAA
1 TAATAATATTTAA
18601673 TAATAAT-TTTAA
1 TAATAATATTTAA
18601685 T-ATAATATT
1 TAATAATATT
18601694 ATTATTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.25
12 8 0.40
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATATTTAA
Found at i:18602279 original size:144 final size:144
Alignment explanation
Indices: 18602081--18602340 Score: 348
Period size: 144 Copynumber: 1.8 Consensus size: 144
18602071 CAAGAATTAG
* *
18602081 CGGCGATTCTTATAAAACGCCGCAAAAAATTGTGCAAAACAACTCCGTTTTTTTTTC-TTTTATT
1 CGGCGATTCTTATAAAACGCCGCAAAAAATTGTGCAAAACAACTCCG-TTTTTTTTCACTATATT
* *
18602145 GGTTTAGTGGCGCTTTTTAAAAAATGCCACAATATATTGGG-CTTTAGCGGCCCTAAGGTGAAAA
65 GCTTTAGTGGCGCTTTTTAAAAAATGCCACAATAGATTGGGACTTTAGCGGCCCTAAGGTGAAAA
18602209 CACCGCTATAGATTC
130 CACCGCTATAGATTC
* * * *
18602224 CGGCGTTTCTTGTAAAAACGCCGCAAAAAATT-TAAGCAAAACGACTTCG-TTTTTTTCACTATA
1 CGGCGATTCTTAT-AAAACGCCGCAAAAAATTGT--GCAAAACAACTCCGTTTTTTTTCACTATA
* ** *
18602287 TTTCTTTAGTGGCGCTTTTTACTAAATGCCGCAATAGATTGGGACTTTAGCGGC
63 TTGCTTTAGTGGCGCTTTTTAAAAAATGCCACAATAGATTGGGACTTTAGCGGC
18602341 GCGTTTTACT
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
143 20 0.20
144 58 0.58
145 22 0.22
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (144 bp):
CGGCGATTCTTATAAAACGCCGCAAAAAATTGTGCAAAACAACTCCGTTTTTTTTCACTATATTG
CTTTAGTGGCGCTTTTTAAAAAATGCCACAATAGATTGGGACTTTAGCGGCCCTAAGGTGAAAAC
ACCGCTATAGATTC
Found at i:18602655 original size:20 final size:20
Alignment explanation
Indices: 18602580--18602655 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
18602570 TATTTTAGGA
* *
18602580 TTAGGGTTTTGAGTTTAGGGT
1 TTAGGGTTTAG-GTTTAAGGT
* * *
18602601 TTATGGTGTAGGTTTAAGGC
1 TTAGGGTTTAGGTTTAAGGT
18602621 TT-GGGTTTGAGGTTTAAGGT
1 TTAGGGTTT-AGGTTTAAGGT
*
18602641 TTAGGGTTTATGTTT
1 TTAGGGTTTAGGTTT
18602656 TAGTGTTAAG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
19 4 0.09
20 26 0.59
21 14 0.32
ACGTcount: A:0.16, C:0.01, G:0.36, T:0.47
Consensus pattern (20 bp):
TTAGGGTTTAGGTTTAAGGT
Found at i:18604408 original size:31 final size:31
Alignment explanation
Indices: 18604370--18604449 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
18604360 TTGGATTTTA
18604370 ATTGGTTTTTG-TAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCT-GCTAAGATGGTACCTTCT
*
18604401 ATTGGTTTTTGCTGCTAAGATGGTACCTTTT
1 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
*
18604432 ATTGATTTTTGCTGCTAA
1 ATTGGTTTTTGCTGCTAA
18604450 ATCAACCATG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
31 45 0.98
32 1 0.02
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.47
Consensus pattern (31 bp):
ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
Found at i:18605317 original size:12 final size:12
Alignment explanation
Indices: 18605296--18605362 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
18605286 TAATAATAAT
18605296 ATTA-TATTAAA
1 ATTATTATTAAA
18605307 ATTATTATT-AA
1 ATTATTATTAAA
18605318 A-TATTATTAATA
1 ATTATTATTAA-A
18605330 ATTA-TATTAGAA
1 ATTATTATTA-AA
*
18605342 A-TGTTATT-AA
1 ATTATTATTAAA
18605352 ATTATATATTA
1 ATTAT-TATTA
18605363 TTTTATTAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 16
0.71 0.03 0.25
Matches are distributed among these distances:
10 10 0.22
11 11 0.24
12 21 0.47
13 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
ATTATTATTAAA
Found at i:18605336 original size:34 final size:35
Alignment explanation
Indices: 18605292--18605362 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
18605282 TTCTTAATAA
18605292 TAATATTATATTA-AAATTATTATTAAA-TAT-TAT
1 TAATATTATATTAGAAA-TATTATTAAATTATATAT
*
18605325 TAATAATTATATTAGAAATGTTATTAAATTATATAT
1 TAAT-ATTATATTAGAAATATTATTAAATTATATAT
18605361 TA
1 TA
18605363 TTTTATTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
33 4 0.12
34 18 0.55
35 6 0.18
36 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (35 bp):
TAATATTATATTAGAAATATTATTAAATTATATAT
Found at i:18606629 original size:3 final size:3
Alignment explanation
Indices: 18606621--18606690 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
18606611 AGTACCTGGC
18606621 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
18606669 AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
18606691 GTGATGTTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:18609802 original size:14 final size:14
Alignment explanation
Indices: 18609783--18609817 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
18609773 TGCATATTCA
*
18609783 GATATGGGTATGTG
1 GATATGAGTATGTG
*
18609797 GATATGATTATGTG
1 GATATGAGTATGTG
18609811 GATATGA
1 GATATGA
18609818 TTTGGATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (14 bp):
GATATGAGTATGTG
Found at i:18609818 original size:14 final size:14
Alignment explanation
Indices: 18609791--18609819 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
18609781 CAGATATGGG
18609791 TATGTGGATATGAT
1 TATGTGGATATGAT
18609805 TATGTGGATATGAT
1 TATGTGGATATGAT
18609819 T
1 T
18609820 TGGATTCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (14 bp):
TATGTGGATATGAT
Found at i:18614457 original size:5 final size:5
Alignment explanation
Indices: 18614451--18614530 Score: 142
Period size: 5 Copynumber: 15.8 Consensus size: 5
18614441 ATATAATCTT
*
18614451 AAATT AAATAA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
1 AAATA AAAT-A AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
18614502 AAATA AAATA AAATA AAATA AAATA AAAT
1 AAATA AAATA AAATA AAATA AAATA AAAT
18614531 TATTCTCTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
5 69 0.95
6 4 0.05
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:18614729 original size:15 final size:15
Alignment explanation
Indices: 18614706--18614749 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
18614696 CAAACAAGAC
*
18614706 CTTAGTTTTTCAATA
1 CTTAATTTTTCAATA
* *
18614721 CTTAATTTTTTAGTA
1 CTTAATTTTTCAATA
18614736 CTTAATTTTTCAAT
1 CTTAATTTTTCAAT
18614750 TTATCAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (15 bp):
CTTAATTTTTCAATA
Found at i:18614795 original size:20 final size:20
Alignment explanation
Indices: 18614773--18614809 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
18614763 CTTAAGTCTA
18614773 AAAAAAACCA-CCACTTACT
1 AAAAAAACCACCCACTTACT
18614792 AAAAAAACCACCCACTTA
1 AAAAAAACCACCCACTTA
18614810 GAAACTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.54, C:0.32, G:0.00, T:0.14
Consensus pattern (20 bp):
AAAAAAACCACCCACTTACT
Found at i:18620296 original size:15 final size:16
Alignment explanation
Indices: 18620258--18620297 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
18620248 GACTTATGTG
18620258 ATATATGTGATGATTT
1 ATATATGTGATGATTT
* *
18620274 AAACATGTGA-GATTT
1 ATATATGTGATGATTT
18620289 ATATATGTG
1 ATATATGTG
18620298 TAAGCTAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (16 bp):
ATATATGTGATGATTT
Found at i:18620543 original size:49 final size:51
Alignment explanation
Indices: 18620485--18620634 Score: 187
Period size: 49 Copynumber: 3.0 Consensus size: 51
18620475 AAGGTGGAAG
18620485 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAA-T-TTAT
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTAT
* * * * *
18620534 TAGTTGTAGTATATTTGCATATCAGTGGTAGCTTGTCCACAAAAGTGTTAT
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTAT
* * * * *
18620585 CAGTGGCAGTTTATCTACAATTCAGTGGTGGCTTATCCACAAAAGGTGTT
1 CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAA-GTGTT
18620635 TCGAATGTAC
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 39 0.47
50 1 0.01
51 38 0.46
52 5 0.06
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (51 bp):
CAGTGGTAGTATATCTGCAAATCAGTGGTGGCTTGTCCACAAAAGTGTTAT
Done.