Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 70 of 185
Found at i:20993664 original size:82 final size:81
Alignment explanation
Indices: 20993546--20993701 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
20993536 TGCTATATAA
* *
20993546 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
20993611 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
20993628 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
20993692 CACTTAGTGC
65 CACTTAGTGC
20993702 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:21001663 original size:27 final size:27
Alignment explanation
Indices: 21001633--21001810 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21001623 ATATTGAGTC
* * * *
21001633 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
21001660 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21001687 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
21001715 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
21001742 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
21001769 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21001796 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21001811 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:21001772 original size:82 final size:81
Alignment explanation
Indices: 21001654--21001809 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21001644 TGCTATATAA
* *
21001654 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
21001719 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
21001736 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
21001800 CACTTAGTGC
65 CACTTAGTGC
21001810 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:21008131 original size:25 final size:24
Alignment explanation
Indices: 21008099--21008147 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
21008089 GACCTTGCCT
* * *
21008099 GTTATCAGCTTGTATGAGCTTACC
1 GTTATCAGCTCGGAGGAGCTTACC
21008123 GTTATTCAGCTCGGAGGAGCTTACC
1 GTTA-TCAGCTCGGAGGAGCTTACC
21008148 ATTTATCGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (24 bp):
GTTATCAGCTCGGAGGAGCTTACC
Found at i:21010696 original size:21 final size:20
Alignment explanation
Indices: 21010661--21010700 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
21010651 GACTAAATTA
*
21010661 GAAACGTTTGAAAAATTTAG
1 GAAACGTTAGAAAAATTTAG
21010681 GAAACAGTTAGAAAAATTTA
1 GAAAC-GTTAGAAAAATTTA
21010701 ACTGCAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.50, C:0.05, G:0.17, T:0.28
Consensus pattern (20 bp):
GAAACGTTAGAAAAATTTAG
Found at i:21012771 original size:45 final size:46
Alignment explanation
Indices: 21012706--21012873 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
21012696 GATTGGAGAG
* * * * * *
21012706 TGCCATAGTGTCTTTTAACCATGTTCTTATTTATTCTT-GTCTTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
* * *
21012751 TGCCATAGTGTCTTTCAACCACGGTCTTATTCATTTTTCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
*
21012797 TG-CACTAGTGTCTTTCAACCATGGTGTTATTCATTTTTCGTCATGT
1 TGCCA-TAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
* * * *
21012843 TGTCATAGTGTCTTTCAGCTATGGTCATATT
1 TGCCATAGTGTCTTTCAACCATGGTCTTATT
21012874 TCTTTGATAC
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
45 35 0.34
46 67 0.64
47 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTTCGTCATGT
Found at i:21012990 original size:45 final size:45
Alignment explanation
Indices: 21012706--21013011 Score: 157
Period size: 45 Copynumber: 6.8 Consensus size: 45
21012696 GATTGGAGAG
* * * *
21012706 TGCCATAGTGTCTTTTAACCATGTTCTTATTTATTCTTGTC-T-TGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATT-TT-TCGTATGA
* * * * *
21012751 TGCCATAGTGTCTTTCAACCACGGTCTTATTCATTTTTCATCGTGT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGT-ATGA
* * *
21012797 TG-CACTAGTGTCTTTCAACCATGGTGTTATTCATTTTTCGTCATGT
1 TGCCA-TAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGT-ATGA
* * * *
21012843 TGTCATAGTGTCTTTCAGCTATGGTC--A-T-ATTTCTTTGATACCTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTT-TTCG-TA--TGA
* * * * * *
21012888 TGCCATAGCGTCTTCCAGCTATGGTCTTACTCGA----TAGAATTGA
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTC-ATTTTTCGTA-TGA
*** * * * *
21012931 TGCCATAACATCTTTCAGCCATGGTGTTACTCATTTTTGGTATGG
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGTATGA
* *
21012976 TGCCATAGTGTCTTTCAACTATGGTCTTAATCATTT
1 TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTT
21013012 CCTTCAAGCC
Statistics
Matches: 208, Mismatches: 35, Indels: 36
0.75 0.13 0.13
Matches are distributed among these distances:
42 5 0.02
43 37 0.18
44 6 0.03
45 91 0.44
46 64 0.31
47 3 0.01
48 1 0.00
50 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTACTCATTTTTCGTATGA
Found at i:21028017 original size:17 final size:18
Alignment explanation
Indices: 21027995--21028038 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
21027985 CTAATGAATG
*
21027995 ACAAATAATCAATA-AAT
1 ACAAATAAGCAATACAAT
21028012 ACAAATAAGCAATACAAT
1 ACAAATAAGCAATACAAT
*
21028030 ACACATAAG
1 ACAAATAAG
21028039 AGAAATAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.61, C:0.16, G:0.05, T:0.18
Consensus pattern (18 bp):
ACAAATAAGCAATACAAT
Found at i:21028720 original size:23 final size:23
Alignment explanation
Indices: 21028694--21028809 Score: 87
Period size: 23 Copynumber: 5.0 Consensus size: 23
21028684 TAAATGTAAG
*
21028694 TAATGTTAATGATAAAATTAAAA
1 TAATATTAATGATAAAATTAAAA
*
21028717 TAATAATACATTG-T-AAATTAAAA
1 TAATATTA-A-TGATAAAATTAAAA
* *
21028740 TAATATTGATGATAAATTTAAAA
1 TAATATTAATGATAAAATTAAAA
* *
21028763 GTAATATTAA-GCTTAAACATAAAAA
1 -TAATATTAATG-ATAAA-ATTAAAA
*
21028788 TAATATTAGAT-TTAAAATTAAA
1 TAATATTA-ATGATAAAATTAAA
21028810 TATATAATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 18
0.73 0.10 0.18
Matches are distributed among these distances:
21 2 0.03
22 2 0.03
23 35 0.47
24 27 0.36
25 8 0.11
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (23 bp):
TAATATTAATGATAAAATTAAAA
Found at i:21028809 original size:24 final size:24
Alignment explanation
Indices: 21028706--21028809 Score: 76
Period size: 24 Copynumber: 4.4 Consensus size: 24
21028696 ATGTTAATGA
* *
21028706 TAAAATT-AAAATAATAATACATT
1 TAAAATTAAAAATAATATTAGATT
*
21028729 GT-AAATT-AAAATAATATT-GATGA
1 -TAAAATTAAAAATAATATTAGAT-T
* * *
21028752 TAAATTTAAAAGTAATATTA-AGCT
1 TAAAATTAAAAATAATATTAGA-TT
21028776 TAAACA-TAAAAATAATATTAGATT
1 TAAA-ATTAAAAATAATATTAGATT
21028800 TAAAATTAAA
1 TAAAATTAAA
21028810 TATATAATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
22 3 0.05
23 20 0.32
24 38 0.61
25 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.35
Consensus pattern (24 bp):
TAAAATTAAAAATAATATTAGATT
Found at i:21029939 original size:18 final size:19
Alignment explanation
Indices: 21029916--21029959 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
21029906 ATTGGGCTTA
*
21029916 TTTATTTGTAATTGGA-TT
1 TTTATTTGTAAATGGACTT
21029934 TTTA-TTGTAAATGGACTT
1 TTTATTTGTAAATGGACTT
21029952 TGTTATTT
1 T-TTATTT
21029960 TTGGACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 7 0.32
19 3 0.14
20 2 0.09
ACGTcount: A:0.23, C:0.02, G:0.16, T:0.59
Consensus pattern (19 bp):
TTTATTTGTAAATGGACTT
Found at i:21041836 original size:18 final size:17
Alignment explanation
Indices: 21041809--21041843 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21041799 TCAAATAATC
21041809 AATAAATACAAATAAGA
1 AATAAATACAAATAAGA
*
21041826 AATAGAATACACATAAGA
1 AATA-AATACAAATAAGA
21041844 GCAATAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (17 bp):
AATAAATACAAATAAGA
Found at i:21042563 original size:22 final size:24
Alignment explanation
Indices: 21042476--21042569 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 24
21042466 TTACATAACA
* *
21042476 AATACATGATAAATGT-AAGTAAT
1 AATACATGATAAATTTAAAATAAT
**
21042499 GTTA-ATGATAAATTTAAAATAAT
1 AATACATGATAAATTTAAAATAAT
*
21042522 AATACATTG-TAAA-TTAAAAAAAT
1 AATACA-TGATAAATTTAAAATAAT
**
21042545 -ATTGATGATAAATTTAAAAGTAAT
1 AATACATGATAAATTTAAAA-TAAT
21042569 A
1 A
21042570 TTAAGCTTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
21 2 0.04
22 17 0.31
23 25 0.46
24 8 0.15
25 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (24 bp):
AATACATGATAAATTTAAAATAAT
Found at i:21042581 original size:46 final size:48
Alignment explanation
Indices: 21042503--21042595 Score: 122
Period size: 46 Copynumber: 2.0 Consensus size: 48
21042493 AGTAATGTTA
*
21042503 ATGATAAATTTAAAATAATAATACATTGTAAAT-TAAAAA-AATATTG
1 ATGATAAATTTAAAATAATAATACACTGTAAATATAAAAATAATATTG
*
21042549 ATGATAAATTTAAAAGTAATATTA-AGCT-TAAATATAAAAATAATATT
1 ATGATAAATTTAAAA-TAATAATACA-CTGTAAATATAAAAATAATATT
21042596 AGATTTAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
46 21 0.51
47 14 0.34
48 6 0.15
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (48 bp):
ATGATAAATTTAAAATAATAATACACTGTAAATATAAAAATAATATTG
Found at i:21042603 original size:24 final size:23
Alignment explanation
Indices: 21042507--21042610 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 23
21042497 ATGTTAATGA
* * *
21042507 TAAATTTAAAATAATAATACATT
1 TAAATTAAAAATAATATTAGATT
*
21042530 GTAAATTAAAAA-AATATT-GATGA
1 -TAAATTAAAAATAATATTAGAT-T
* *
21042553 TAAATTTAAAAGTAATATTA-AGCT
1 TAAA-TTAAAAATAATATTAGA-TT
21042577 TAAATATAAAAATAATATTAGATT
1 TAAAT-TAAAAATAATATTAGATT
21042601 TAAAATTAAA
1 T-AAATTAAA
21042611 TATATAATTT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
22 6 0.10
23 12 0.19
24 40 0.63
25 5 0.08
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.36
Consensus pattern (23 bp):
TAAATTAAAAATAATATTAGATT
Found at i:21043684 original size:17 final size:17
Alignment explanation
Indices: 21043662--21043697 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21043652 CTGTTAGGTT
21043662 TTAGGCTAGGCTTTGTA
1 TTAGGCTAGGCTTTGTA
* *
21043679 TTAGGCTTGGGTTTGTA
1 TTAGGCTAGGCTTTGTA
21043696 TT
1 TT
21043698 GGGATTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.08, G:0.31, T:0.47
Consensus pattern (17 bp):
TTAGGCTAGGCTTTGTA
Found at i:21043714 original size:19 final size:18
Alignment explanation
Indices: 21043690--21043737 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
21043680 TAGGCTTGGG
21043690 TTTGT-ATTGGGATTATTTA
1 TTTGTAATT-GGATT-TTTA
21043709 TTTGTAATTGGATTTTTA
1 TTTGTAATTGGATTTTTA
*
21043727 -TTGTAAATGGA
1 TTTGTAATTGGA
21043738 CATTATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 10 0.37
18 4 0.15
19 10 0.37
20 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (18 bp):
TTTGTAATTGGATTTTTA
Found at i:21044981 original size:4 final size:4
Alignment explanation
Indices: 21044972--21045002 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
21044962 ACTCATTTTG
21044972 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
21045003 TTCGAACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:21051605 original size:50 final size:50
Alignment explanation
Indices: 21051551--21051652 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
21051541 TTCATTAGTT
* *
21051551 CTCCTAATTTTTGTCGGAGGCATTTTCGATAAGATTTCAATCTAGAGAGA
1 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
21051601 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
1 CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
21051651 CT
1 CT
21051653 AACTTAATAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (50 bp):
CTCCTAATTTTTGTCGGAGCCATTTCCGATAAGATTTCAATCTAGAGAGA
Found at i:21056370 original size:24 final size:23
Alignment explanation
Indices: 21056343--21056391 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
21056333 TACCGATTAT
*
21056343 AGCTCGTATGAGCATACTATTTAC
1 AGCTCGTATGAGCATAC-ATGTAC
* *
21056367 AGCTTGTGTGAGCATACATGTAC
1 AGCTCGTATGAGCATACATGTAC
21056390 AG
1 AG
21056392 GATTTGACGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (23 bp):
AGCTCGTATGAGCATACATGTAC
Found at i:21057981 original size:22 final size:23
Alignment explanation
Indices: 21057938--21057981 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
21057928 TATGTATGAT
* * *
21057938 TTGATTTGATTTTAATATGTTTA
1 TTGATATGATTTTAAAAAGTTTA
21057961 TTGATATGA-TTTAAAAAGTTT
1 TTGATATGATTTTAAAAAGTTT
21057982 GAAATTTAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (23 bp):
TTGATATGATTTTAAAAAGTTTA
Found at i:21064777 original size:27 final size:26
Alignment explanation
Indices: 21064747--21064805 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
21064737 TTTTGCAATG
**
21064747 GTAAAACCGTCAAATATTTTATCGAGA
1 GTAAAACCAACAAATA-TTTATCGAGA
* * *
21064774 GTAAAATCAACAAATATTTATCGGGG
1 GTAAAACCAACAAATATTTATCGAGA
21064800 GTAAAA
1 GTAAAA
21064806 TTTGGATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (26 bp):
GTAAAACCAACAAATATTTATCGAGA
Found at i:21069464 original size:40 final size:40
Alignment explanation
Indices: 21069409--21069491 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
21069399 AAAAGATAAG
**
21069409 AAAGATTAGCCTAGAGACAAGCCATGAAAATGGACCTTGA
1 AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
*
21069449 AAAGATTAGCCTAGAGACAAGCGACAAAAATGGACCTTGA
1 AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
21069489 AAA
1 AAA
21069492 TCAAAATGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (40 bp):
AAAGATTAGCCTAGAGACAAGCCACAAAAATGGACCTTGA
Found at i:21069802 original size:27 final size:27
Alignment explanation
Indices: 21069764--21069816 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
21069754 AAGATAGCCA
*
21069764 GTGTACTTGAAGACTCATTGAGGTTGG
1 GTGTACTTGAAGACGCATTGAGGTTGG
21069791 GTGTACTTGAAGACGCATTGAGGTTG
1 GTGTACTTGAAGACGCATTGAGGTTG
21069817 AAGTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.11, G:0.34, T:0.32
Consensus pattern (27 bp):
GTGTACTTGAAGACGCATTGAGGTTGG
Found at i:21075849 original size:30 final size:30
Alignment explanation
Indices: 21075797--21075856 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
21075787 TCATGATTGG
* * *
21075797 TTTTTTTTTTTATTTTTAGTTAGTTGTTTA
1 TTTTTTTGTTTATTTATAGTTAGTTATTTA
21075827 TTTTTCTTGTTTATTTAT-GTTAGTTATTTA
1 TTTTT-TTGTTTATTTATAGTTAGTTATTTA
21075857 ATTTCTATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.15, C:0.02, G:0.10, T:0.73
Consensus pattern (30 bp):
TTTTTTTGTTTATTTATAGTTAGTTATTTA
Found at i:21077542 original size:49 final size:49
Alignment explanation
Indices: 21077485--21077583 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
21077475 AGACAGTCAG
21077485 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
1 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
*
21077534 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGTCATTTTC
1 GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
21077583 G
1 G
21077584 CATGGCTTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (49 bp):
GGATACAATTTAAACTTCTATAAGTACACATTCAAAAGATGCCATTTTC
Found at i:21078437 original size:47 final size:47
Alignment explanation
Indices: 21078366--21078770 Score: 675
Period size: 47 Copynumber: 8.6 Consensus size: 47
21078356 CCCTTCGGGA
* * * * * *
21078366 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
21078413 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21078460 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21078507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
21078554 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21078601 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
21078648 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21078697 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
21078744 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
21078771 TATTCAAATA
Statistics
Matches: 340, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 295 0.87
49 45 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:21078444 original size:25 final size:25
Alignment explanation
Indices: 21078416--21078494 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
21078406 ACTCGGCCCT
21078416 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
21078441 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
21078463 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
21078488 ATCACAT
1 ATCACAT
21078495 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:21081337 original size:15 final size:15
Alignment explanation
Indices: 21081317--21081394 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
21081307 TTTATGGAAA
21081317 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
21081332 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
21081346 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
21081362 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
21081376 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
21081392 ATC
1 ATC
21081395 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:21081354 original size:30 final size:30
Alignment explanation
Indices: 21081313--21081394 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
21081303 CATATTTATG
*
21081313 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
21081343 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
21081373 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
21081395 GAGATATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:21085945 original size:15 final size:15
Alignment explanation
Indices: 21085925--21086032 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
21085915 TTTATGGAAA
21085925 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
21085940 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
21085954 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
21085970 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
*
21085984 AGTCAAAGATGTGGGT
1 A-TCAAAGATATGGGT
* **
21086000 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
21086014 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
21086030 ATC
1 ATC
21086033 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:21085962 original size:30 final size:30
Alignment explanation
Indices: 21085919--21086042 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
21085909 TCCATATTTA
* *
21085919 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
21085949 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
21085979 TGGAAAGTCAAAGATGTGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
21086009 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
21086040 TGG
1 TGG
21086043 CATAATAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 78 0.91
31 8 0.09
ACGTcount: A:0.43, C:0.06, G:0.25, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:21089282 original size:61 final size:61
Alignment explanation
Indices: 21089183--21089299 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
21089173 AAGAACAAAC
* * * * *
21089183 TGCCACCAAAACTAAAAGATCTAGGGCGTTTCATTATACCTTGTTCGATTGGAAAGAAAAT
1 TGCCACCAAAACTAAAAGATCCAAGGAGTTTCACTATACCATGTTCGATTGGAAAGAAAAT
* * *
21089244 TGCCACCAAAATTAGAAGATCCAAGGAGTTTCGCTATACCATGTTCGATTGGAAAG
1 TGCCACCAAAACTAAAAGATCCAAGGAGTTTCACTATACCATGTTCGATTGGAAAG
21089300 CATTATGTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (61 bp):
TGCCACCAAAACTAAAAGATCCAAGGAGTTTCACTATACCATGTTCGATTGGAAAGAAAAT
Found at i:21102576 original size:22 final size:22
Alignment explanation
Indices: 21102551--21102592 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
21102541 ATATACACAT
21102551 TTTTTAACTCAAATTCATGCCC
1 TTTTTAACTCAAATTCATGCCC
*
21102573 TTTTTCACTCAAATTCATGC
1 TTTTTAACTCAAATTCATGC
21102593 AGTTTCGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.43
Consensus pattern (22 bp):
TTTTTAACTCAAATTCATGCCC
Found at i:21104152 original size:137 final size:137
Alignment explanation
Indices: 21103906--21104174 Score: 502
Period size: 137 Copynumber: 2.0 Consensus size: 137
21103896 CATGTAATAT
*
21103906 TTTATTTGCTTATGAGATTAAATTAATTGTTTGAATTGGCATAGAGATATGTACAAGAGATTATT
1 TTTATGTGCTTATGAGATTAAATTAATTGTTTGAATTGGCATAGAGATATGTACAAGAGATTATT
*
21103971 TTAATTTCATAAGTATGTATGTGCATTAACACATTTTCTTATTAAAATTTGTTTAATCGGTTGAA
66 TTAATTTCATAAGTATGTATGTGCAGTAACACATTTTCTTATTAAAATTTGTTTAATCGGTTGAA
21104036 TTAATTG
131 TTAATTG
21104043 TTTATGTGCTTATGAGATTAAATTAATTGTTTGAATTGGCATAGAGATATGTACAAGAGATTATT
1 TTTATGTGCTTATGAGATTAAATTAATTGTTTGAATTGGCATAGAGATATGTACAAGAGATTATT
* *
21104108 TTAATTTCATAAGTATGTATGTGCAGTAACTCTTTTTCTTATTAAAATTTGTTTAATCGGTTGAA
66 TTAATTTCATAAGTATGTATGTGCAGTAACACATTTTCTTATTAAAATTTGTTTAATCGGTTGAA
21104173 TT
131 TT
21104175 GACATAGAGA
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 128 1.00
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (137 bp):
TTTATGTGCTTATGAGATTAAATTAATTGTTTGAATTGGCATAGAGATATGTACAAGAGATTATT
TTAATTTCATAAGTATGTATGTGCAGTAACACATTTTCTTATTAAAATTTGTTTAATCGGTTGAA
TTAATTG
Found at i:21126439 original size:13 final size:12
Alignment explanation
Indices: 21126412--21126451 Score: 71
Period size: 12 Copynumber: 3.2 Consensus size: 12
21126402 TAAATTGCTT
21126412 AAAAATCAAGCA
1 AAAAATCAAGCA
21126424 AAAAATCAAGCA
1 AAAAATCAAGCA
21126436 AAAAATCAAGTCA
1 AAAAATCAAG-CA
21126449 AAA
1 AAA
21126452 GCCACTAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.68, C:0.15, G:0.07, T:0.10
Consensus pattern (12 bp):
AAAAATCAAGCA
Found at i:21129218 original size:27 final size:27
Alignment explanation
Indices: 21129188--21129365 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
21129178 ATATTGAGCC
* *
21129188 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
21129215 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
21129242 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** * ** *
21129270 CGCACACTTAGTGCCGCGTGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
21129297 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
21129324 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
21129351 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21129366 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:21129327 original size:82 final size:81
Alignment explanation
Indices: 21129209--21129364 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21129199 TGCTATATAA
* *
21129209 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
21129274 CACTTAGTGCCGCGTGG
65 CACTTAGTGCCGCGTGG
* * **
21129291 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
21129355 CACTTAGTGC
65 CACTTAGTGC
21129365 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCGTGG
Found at i:21136945 original size:27 final size:27
Alignment explanation
Indices: 21136915--21137092 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21136905 ATATTGAGCC
* * * *
21136915 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
21136942 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21136969 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
21136997 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
21137024 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
21137051 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21137078 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21137093 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:21137054 original size:82 final size:81
Alignment explanation
Indices: 21136936--21137091 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21136926 TGCTATATAA
* *
21136936 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
21137001 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
21137018 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
21137082 CACTTAGTGC
65 CACTTAGTGC
21137092 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:21143576 original size:24 final size:22
Alignment explanation
Indices: 21143543--21143605 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 22
21143533 ATCCTCACTG
*
21143543 TTTCGTTTCTTTTTATCAATTTTCT
1 TTTC-TTTCTTTTT-TCAATCTT-T
21143568 TTTCTTTCTCTTTTTCAATCTTT
1 TTTCTTTCT-TTTTTCAATCTTT
21143591 TTTCTTGTACTTTTT
1 TTTCTT-T-CTTTTT
21143606 CTTTCTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
23 7 0.21
24 17 0.50
25 10 0.29
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (22 bp):
TTTCTTTCTTTTTTCAATCTTT
Found at i:21157875 original size:20 final size:20
Alignment explanation
Indices: 21157852--21157903 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
21157842 AATAAAGTGC
*
21157852 AAATGATTTTAACCAAGTCA
1 AAATGATTTTAACAAAGTCA
* * *
21157872 AAATGATTTCAATAAAGTTA
1 AAATGATTTTAACAAAGTCA
*
21157892 AAATTATTTTAA
1 AAATGATTTTAA
21157904 AATTATTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.37
Consensus pattern (20 bp):
AAATGATTTTAACAAAGTCA
Found at i:21163314 original size:23 final size:22
Alignment explanation
Indices: 21163262--21163314 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
21163252 TCCACGTCTT
*
21163262 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
21163284 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
21163307 TTTCTTTT
1 TTTCTTTT
21163315 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:21176483 original size:38 final size:38
Alignment explanation
Indices: 21176409--21176493 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
21176399 ATTTCCTTAT
* *
21176409 TTTCACACACATTGCTTTTAACTCGTTCCATGCTTTTA
1 TTTCACTCACATTGCTTTTAACTCGTTCCATACTTTTA
* *
21176447 TTTCACTCACTTTGCTTTTAAC-C-TTCACAATACTTTTG
1 TTTCACTCACATTGCTTTTAACTCGTTC-C-ATACTTTTA
21176485 TTTC-CTCAC
1 TTTCACTCAC
21176494 CTAATTTTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.07
37 7 0.17
38 31 0.76
ACGTcount: A:0.20, C:0.28, G:0.06, T:0.46
Consensus pattern (38 bp):
TTTCACTCACATTGCTTTTAACTCGTTCCATACTTTTA
Found at i:21186642 original size:40 final size:40
Alignment explanation
Indices: 21186591--21186867 Score: 464
Period size: 40 Copynumber: 6.9 Consensus size: 40
21186581 ATAACCGCAA
* * * *
21186591 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
21186631 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
21186671 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
21186711 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
21186751 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
21186791 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
21186831 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
21186868 ATGCTCATGC
Statistics
Matches: 221, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:21189843 original size:15 final size:15
Alignment explanation
Indices: 21189805--21189843 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
21189795 TTGATGACTT
*
21189805 CCTAGGGTGGTCAAC
1 CCTAGGGTTGTCAAC
**
21189820 CCTAGGGTTGTCAGG
1 CCTAGGGTTGTCAAC
21189835 CCTAGGGTT
1 CCTAGGGTT
21189844 TTACGTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.36, T:0.26
Consensus pattern (15 bp):
CCTAGGGTTGTCAAC
Found at i:21192828 original size:13 final size:13
Alignment explanation
Indices: 21192810--21192834 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21192800 GAGGAGTTTT
21192810 AGGTGGTGGTTGA
1 AGGTGGTGGTTGA
21192823 AGGTGGTGGTTG
1 AGGTGGTGGTTG
21192835 TTTGTTAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32
Consensus pattern (13 bp):
AGGTGGTGGTTGA
Found at i:21204045 original size:22 final size:22
Alignment explanation
Indices: 21204020--21204062 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
21204010 TTATGTGACA
21204020 GTTTATCT-GCAATTATGTGGTT
1 GTTTAT-TGGCAATTATGTGGTT
*
21204042 GTTTATTGGCATTTATGTGGT
1 GTTTATTGGCAATTATGTGGT
21204063 GGCTTGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.16, C:0.07, G:0.26, T:0.51
Consensus pattern (22 bp):
GTTTATTGGCAATTATGTGGTT
Found at i:21213425 original size:19 final size:19
Alignment explanation
Indices: 21213401--21213438 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
21213391 CTTCAAAAGA
21213401 AAGGTTGAAGAAGATTATC
1 AAGGTTGAAGAAGATTATC
21213420 AAGGTTGAAGAAGATTATC
1 AAGGTTGAAGAAGATTATC
21213439 CCCAAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.26, T:0.26
Consensus pattern (19 bp):
AAGGTTGAAGAAGATTATC
Found at i:21221959 original size:21 final size:21
Alignment explanation
Indices: 21221935--21221979 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
21221925 CAATGGAAGT
21221935 ATGCTTATGTTAATGAAAATG
1 ATGCTTATGTTAATGAAAATG
21221956 ATGCTTATGTTAATGAAAATG
1 ATGCTTATGTTAATGAAAATG
21221977 ATG
1 ATG
21221980 AATTTAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (21 bp):
ATGCTTATGTTAATGAAAATG
Found at i:21227833 original size:40 final size:40
Alignment explanation
Indices: 21227651--21227873 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
21227641 TCCTCGTTCA
* * * *
21227651 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
21227690 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
21227730 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
21227770 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
21227810 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
21227850 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
21227874 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 38 0.24
40 115 0.71
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:21227873 original size:120 final size:119
Alignment explanation
Indices: 21227651--21227873 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
21227641 TCCTCGTTCA
* * *
21227651 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
21227716 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
21227770 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
21227834 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
21227874 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 38 0.44
120 43 0.49
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:21227882 original size:41 final size:41
Alignment explanation
Indices: 21227805--21227882 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
21227795 TTAGTATCTC
* * *
21227805 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
21227846 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
21227883 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:21235180 original size:40 final size:40
Alignment explanation
Indices: 21234997--21235166 Score: 243
Period size: 40 Copynumber: 4.3 Consensus size: 40
21234987 TCCTCGTTCA
* * * *
21234997 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
21235036 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
21235076 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
21235116 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
21235156 AAGGCCTTCGG
1 AATGCCTTCGG
21235167 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 35 0.29
40 85 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:21235203 original size:80 final size:79
Alignment explanation
Indices: 21234995--21235219 Score: 220
Period size: 80 Copynumber: 2.8 Consensus size: 79
21234985 GCTCCTCGTT
* * * * * *
21234995 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
21235059 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * *
21235074 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
** *
21235139 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
** * * * * *
21235154 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCAGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
21235218 GA
64 GA
21235220 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 38 0.31
80 79 0.65
81 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:21235219 original size:120 final size:119
Alignment explanation
Indices: 21234997--21235219 Score: 263
Period size: 120 Copynumber: 1.9 Consensus size: 119
21234987 TCCTCGTTCA
* * *
21234997 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* * *
21235062 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCAGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
21235116 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
21235180 TATATTC-ACTTAGCAC-AAAGCCTTCAGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCAGGACTTAACCCGGA
21235220 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
119 38 0.44
120 42 0.49
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCAGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:21235228 original size:41 final size:41
Alignment explanation
Indices: 21235151--21235228 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
21235141 TTAGTATCTC
* * *
21235151 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
21235192 GCACAAA-GCCTTCAGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
21235229 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:21245744 original size:40 final size:40
Alignment explanation
Indices: 21245634--21245744 Score: 141
Period size: 40 Copynumber: 2.8 Consensus size: 40
21245624 AATTATTGAA
* * *
21245634 TGAATGCACACACGTGCCCCTAATTGTACTTCAGTACCTC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCCC
* * *
21245674 TGAATGCACATACGTACCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCCC
* * *
21245714 TGAATGCACATATGTGCCCTTATTTTTACTT
1 TGAATGCACATACGTGCCCCTATTTGTACTT
21245745 TTGTAATCCT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTCAGTACCCC
Found at i:21249610 original size:27 final size:26
Alignment explanation
Indices: 21249540--21249647 Score: 153
Period size: 27 Copynumber: 4.1 Consensus size: 26
21249530 TCCCAACGAG
* *
21249540 CTACCCCTGATTACTGTCTCAGTGGA
1 CTACCCGTGATTACTGTCCCAGTGGA
*
21249566 CTACCCGTGATTGCTGTCCCAGTGGA
1 CTACCCGTGATTACTGTCCCAGTGGA
21249592 CTACCCTGTGATTACTGTCCCAGTGGA
1 CTACCC-GTGATTACTGTCCCAGTGGA
* *
21249619 CTACCCCGTGTTTACTGTCCTAGTGGA
1 CTA-CCCGTGATTACTGTCCCAGTGGA
21249646 CT
1 CT
21249648 CTATTGGTTG
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 29 0.39
27 42 0.57
28 3 0.04
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.31
Consensus pattern (26 bp):
CTACCCGTGATTACTGTCCCAGTGGA
Found at i:21252769 original size:50 final size:51
Alignment explanation
Indices: 21252708--21252840 Score: 180
Period size: 51 Copynumber: 2.6 Consensus size: 51
21252698 TATCATTCGA
* * *
21252708 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACTTTTCGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAACCTTCCGG
*
21252758 TTCACGTAGTAGCCTGT-ACATAGTACTACACACGTGACCAAAACCTTCCGG
1 TACACGTAGTAGCCT-TCACATAGTACTACACACGTGACCAAAACCTTCCGG
* * *
21252809 TACGCATAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTTCACATAGTACTACACA
21252841 TGTAGTACTA
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
50 35 0.49
51 37 0.51
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAACCTTCCGG
Found at i:21252939 original size:51 final size:51
Alignment explanation
Indices: 21252841--21252966 Score: 155
Period size: 51 Copynumber: 2.5 Consensus size: 51
21252831 GTACTACACA
* ** * *
21252841 TGTAGTACTATGTGCAGGCTACTATGCGTACCGGAAGGTTTTGGTCACGTG
1 TGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAGGTGATAGTCACATG
* *
21252892 TGTAGTACTATGTGCAGGCTACTACGTGTATCGGATA-GTGATAGTCACATG
1 TGTAGTACTATGTGCAGGCTACTACGCGTACCGGA-AGGTGATAGTCACATG
* *
21252943 TGTAGTACTATGTGTACGCTACTA
1 TGTAGTACTATGTGCAGGCTACTA
21252967 TGTGAACTGG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
51 64 0.98
52 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (51 bp):
TGTAGTACTATGTGCAGGCTACTACGCGTACCGGAAGGTGATAGTCACATG
Found at i:21253240 original size:37 final size:38
Alignment explanation
Indices: 21253171--21253243 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
21253161 ATGTGTGGAA
* **
21253171 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
21253209 TTGAATTGAATAGTGAC-TGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
21253244 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 15 0.48
38 16 0.52
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.30
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:21255191 original size:27 final size:27
Alignment explanation
Indices: 21255161--21255338 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
21255151 ATATTGAGTC
* * *
21255161 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
21255188 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21255215 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
21255243 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
21255270 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
21255297 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21255324 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21255339 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:21255300 original size:82 final size:81
Alignment explanation
Indices: 21255182--21255337 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21255172 TGCTATATAA
* *
21255182 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
21255247 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
21255264 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
21255328 CACTTAGTGC
65 CACTTAGTGC
21255338 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:21263879 original size:39 final size:40
Alignment explanation
Indices: 21263728--21263897 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
21263718 GGACTAAGAT
* * *
21263728 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
21263768 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
21263808 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
21263848 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
21263887 CCGAAGGCATT
1 CCGAAGGCATT
21263898 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:21263917 original size:79 final size:80
Alignment explanation
Indices: 21263750--21263932 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
21263740 GTGCGAGATA
* * * *
21263750 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
21263815 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
21263830 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
21263894 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
21263909 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
21263933 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:21274798 original size:39 final size:40
Alignment explanation
Indices: 21274647--21274816 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
21274637 GGACTAAGAT
* * *
21274647 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
21274687 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
21274727 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
21274767 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
21274806 CCGAAGGCATT
1 CCGAAGGCATT
21274817 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:21274836 original size:79 final size:80
Alignment explanation
Indices: 21274669--21274851 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
21274659 GTGCGAGATA
* * * *
21274669 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
21274734 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
21274749 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
21274813 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
21274828 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
21274852 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:21281732 original size:51 final size:49
Alignment explanation
Indices: 21281609--21281801 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 49
21281599 GAAAGTGATG
* * * *
21281609 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATA
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTA
* * * * * *
21281658 GGTCGCATGTGTAGTACTATGTGCAAGCCACTATGCGTACCGGATAGCTTC
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTA
* *
21281709 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATA
1 G-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT--TA
* * * *
21281761 GTCACATGTGTAGTACTATGTGTACGCTACTATGTGAACCG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
21281802 ATATCATTAA
Statistics
Matches: 115, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.35
51 73 0.63
52 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTA
Found at i:21281872 original size:46 final size:44
Alignment explanation
Indices: 21281801--21281890 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 44
21281791 TATGTGAACC
*
21281801 GATATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCCACCG
1 GATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CCACCG
* *
21281845 GATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCCACCG
1 GATATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCCACCG
21281891 TGTATCTGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.32
45 2 0.05
46 23 0.57
47 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
GATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCCACCG
Found at i:21282039 original size:38 final size:37
Alignment explanation
Indices: 21281997--21282069 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
21281987 ACGTGTGGAA
* *
21281997 TTGAATTGAATATTGACTTGAAAATGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TTGAAAATGAAAAAGTGAATT
*
21282035 TTGAATTGAATAGTGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTGAAAATGAAAAAGTGAA
21282070 ATTATGAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTGAAAATGAAAAAGTGAATT
Found at i:21288462 original size:12 final size:12
Alignment explanation
Indices: 21288441--21288477 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
21288431 GATTTGTAAG
21288441 GTTTTTATTTTT
1 GTTTTTATTTTT
*
21288453 GTTTTGATTTTT
1 GTTTTTATTTTT
21288465 GATTTTTATTTTT
1 G-TTTTTATTTTT
21288478 ATCTTGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (12 bp):
GTTTTTATTTTT
Found at i:21294832 original size:33 final size:33
Alignment explanation
Indices: 21294794--21294863 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
21294784 AGAGGCTTAC
*
21294794 CTTTAGGAGTAGGAAAACAAAATTCAGTTTTAA
1 CTTTAGGAGAAGGAAAACAAAATTCAGTTTTAA
* * *
21294827 CTTTAGGAGAAGGAAAACAAAGTTCGGTTTTAC
1 CTTTAGGAGAAGGAAAACAAAATTCAGTTTTAA
21294860 CTTT
1 CTTT
21294864 TCCATTTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (33 bp):
CTTTAGGAGAAGGAAAACAAAATTCAGTTTTAA
Found at i:21296516 original size:68 final size:68
Alignment explanation
Indices: 21296429--21296584 Score: 285
Period size: 68 Copynumber: 2.3 Consensus size: 68
21296419 GAAGAAAACA
*
21296429 TGCATGGAATGCATTAAAGAGAATGGGCTGCTGCAATTAAGAAGCTTTATCTACTTTGGACGGCA
1 TGCATGG-ATGGATTAAAGAGAATGGGCTGCTGCAATTAAGAAGCTTTATCTACTTTGGACGGCA
21296494 AGGG
65 AGGG
21296498 TGCATGGATGGATTAAAGAGAATGGGCTGCTGCAATTAAGAAGCTTTATCTACTTTGGACGGCAA
1 TGCATGGATGGATTAAAGAGAATGGGCTGCTGCAATTAAGAAGCTTTATCTACTTTGGACGGCAA
21296563 GGG
66 GGG
*
21296566 TGCATGGATGGATTTAAGA
1 TGCATGGATGGATTAAAGA
21296585 TGGTGTGCCG
Statistics
Matches: 85, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
68 78 0.92
69 7 0.08
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (68 bp):
TGCATGGATGGATTAAAGAGAATGGGCTGCTGCAATTAAGAAGCTTTATCTACTTTGGACGGCAA
GGG
Found at i:21298551 original size:17 final size:18
Alignment explanation
Indices: 21298529--21298570 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
21298519 TTTACTTCTT
21298529 TTTTTTTATAC-TCAAAC
1 TTTTTTTATACTTCAAAC
* *
21298546 TTTTTTT-TACTTCGAAT
1 TTTTTTTATACTTCAAAC
21298563 TTTTTTTA
1 TTTTTTTA
21298571 CTACAATAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.21, C:0.12, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTTTATACTTCAAAC
Found at i:21307322 original size:25 final size:24
Alignment explanation
Indices: 21307293--21307366 Score: 63
Period size: 25 Copynumber: 3.3 Consensus size: 24
21307283 TCAAGAGTAA
21307293 TATAACTTGATTTTTGACAAAAAAT
1 TATAACTTGATTTTT-ACAAAAAAT
**
21307318 TATAAC-T-A---TT-CAAGTAA-
1 TATAACTTGATTTTTACAAAAAAT
21307335 TATAACTTGATTTTTTACAAAAAAT
1 TATAACTTGA-TTTTTACAAAAAAT
21307360 TATAACT
1 TATAACT
21307367 ATTCAAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 16
0.65 0.07 0.28
Matches are distributed among these distances:
17 6 0.16
18 6 0.16
19 1 0.03
20 2 0.05
23 3 0.08
24 6 0.16
25 13 0.35
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (24 bp):
TATAACTTGATTTTTACAAAAAAT
Found at i:21307344 original size:42 final size:42
Alignment explanation
Indices: 21307288--21307379 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
21307278 ATTGATCAAG
21307288 AGTAATATAACTTGATTTTTGACAAAAAATTATAACTATTCA
1 AGTAATATAACTTGATTTTTGACAAAAAATTATAACTATTCA
*
21307330 AGTAATATAACTTGATTTTTTACAAAAAATTATAACTATTCA
1 AGTAATATAACTTGATTTTTGACAAAAAATTATAACTATTCA
*
21307372 AATAATAT
1 AGTAATAT
21307380 TACCTGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (42 bp):
AGTAATATAACTTGATTTTTGACAAAAAATTATAACTATTCA
Found at i:21312841 original size:11 final size:11
Alignment explanation
Indices: 21312811--21312845 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
21312801 ACTTTATTTT
*
21312811 TTTTGTTCGAG
1 TTTTGTTCGTG
21312822 TTATTGTTCGTG
1 TT-TTGTTCGTG
21312834 TTTTGTTCGTG
1 TTTTGTTCGTG
21312845 T
1 T
21312846 GTTGAAGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.06, C:0.09, G:0.26, T:0.60
Consensus pattern (11 bp):
TTTTGTTCGTG
Found at i:21317879 original size:19 final size:20
Alignment explanation
Indices: 21317834--21317879 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
21317824 TTTTATTATT
21317834 TTAATTCTTGATTAATTATGA
1 TTAATT-TTGATTAATTATGA
* *
21317855 -TGATTTTGTTTAATT-TGA
1 TTAATTTTGATTAATTATGA
21317873 TTAATTT
1 TTAATTT
21317880 CTATATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 3 0.14
19 14 0.67
20 4 0.19
ACGTcount: A:0.28, C:0.02, G:0.11, T:0.59
Consensus pattern (20 bp):
TTAATTTTGATTAATTATGA
Found at i:21323306 original size:40 final size:40
Alignment explanation
Indices: 21323251--21323349 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
21323241 TTGAACAACT
* *
21323251 TTCAGTAGGTATGGCTTGATAGAACATACTTTTTAGTGGA
1 TTCAGTAGGTATGGCTCGATAGAACATACTTTGTAGTGGA
* * * *
21323291 TTCAGTATGTATGGCTCGATGGAGCCTACTTTGTAGTGGA
1 TTCAGTAGGTATGGCTCGATAGAACATACTTTGTAGTGGA
21323331 TTCAGTAGGTATGGCTCGA
1 TTCAGTAGGTATGGCTCGA
21323350 AAGCGCATAC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.35
Consensus pattern (40 bp):
TTCAGTAGGTATGGCTCGATAGAACATACTTTGTAGTGGA
Found at i:21323373 original size:40 final size:40
Alignment explanation
Indices: 21323329--21323417 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
21323319 CTTTGTAGTG
* *
21323329 GATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAATA
1 GATTCAGTAGCTATGGCTCGAAAGCGCATACATTTCAATA
* * ** * *
21323369 GATTCAGTAGCTATGGTTCGATATTGTATACATTTCAGTA
1 GATTCAGTAGCTATGGCTCGAAAGCGCATACATTTCAATA
21323409 GATTCAGTA
1 GATTCAGTA
21323418 AATACCACTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (40 bp):
GATTCAGTAGCTATGGCTCGAAAGCGCATACATTTCAATA
Found at i:21325200 original size:20 final size:20
Alignment explanation
Indices: 21325175--21325315 Score: 67
Period size: 20 Copynumber: 7.0 Consensus size: 20
21325165 TTGTACGGGA
21325175 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
** *
21325195 TTTGCACTTCAGTGCCCCTG
1 TTTGCACTTTGGTGCCTCTG
* **
21325215 TATATACTTTGGTGTCC-CTG
1 TTTGCACTTTGGTG-CCTCTG
* * * *
21325235 TTCGTACTATGGTGCC-CTTT
1 TTTGCACTTTGGTGCCTC-TG
* * *
21325255 TTTGTACATTT-GTGCCCCTA
1 TTTGCAC-TTTGGTGCCTCTG
21325275 TTTGCACTTTGGTG-CTCTTG
1 TTTGCACTTTGGTGCCTC-TG
*
21325295 TTATGCATCTTT-ATGCCTCTG
1 TT-TGCA-CTTTGGTGCCTCTG
21325316 ATGTGGTTTA
Statistics
Matches: 92, Mismatches: 20, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
19 8 0.09
20 64 0.70
21 13 0.14
22 7 0.08
ACGTcount: A:0.11, C:0.25, G:0.20, T:0.45
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTG
Found at i:21332717 original size:23 final size:23
Alignment explanation
Indices: 21332689--21332734 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
21332679 ATTACCAATG
* *
21332689 AAAACCTCCTCTAATAATAGTAA
1 AAAACCTCCTATAATAACAGTAA
21332712 AAAACCTCCTATAATAACAGTAA
1 AAAACCTCCTATAATAACAGTAA
21332735 CACGGTACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.22, G:0.04, T:0.24
Consensus pattern (23 bp):
AAAACCTCCTATAATAACAGTAA
Found at i:21336595 original size:24 final size:24
Alignment explanation
Indices: 21336561--21336607 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
21336551 ATCTCAATGT
* * *
21336561 TAGTGGTTACATCTACTTTTATGC
1 TAGTGGCTACATCAACTGTTATGC
21336585 TAGTGGCTACATCAACTGTTATG
1 TAGTGGCTACATCAACTGTTATG
21336608 GTTTTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (24 bp):
TAGTGGCTACATCAACTGTTATGC
Found at i:21338659 original size:17 final size:17
Alignment explanation
Indices: 21338637--21338669 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21338627 CACTATGATT
*
21338637 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
21338654 AAAATGCAACGACAAT
1 AAAATGCAACGACAAT
21338670 GTTCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:21351571 original size:25 final size:25
Alignment explanation
Indices: 21351543--21351594 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
21351533 ATTGCGTTCA
21351543 TTTTTGAACCAA-TATTCTTTCAATC
1 TTTTTGAA-CAATTATTCTTTCAATC
* *
21351568 TTTTTGAATAATTATTCTTTCATTC
1 TTTTTGAACAATTATTCTTTCAATC
21351593 TT
1 TT
21351595 CATTCATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTTTGAACAATTATTCTTTCAATC
Found at i:21352727 original size:14 final size:14
Alignment explanation
Indices: 21352696--21352746 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
21352686 AAGAAAACAA
*
21352696 AAAAAT-GAAAATG
1 AAAAATGGAAAAAG
21352709 AAAAATGGAAAAAGG
1 AAAAATGGAAAAA-G
*
21352724 AAAAA-GTAAAAAG
1 AAAAATGGAAAAAG
21352737 TAAAAATGGA
1 -AAAAATGGA
21352747 GAGGCTAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 7 0.23
14 16 0.52
15 8 0.26
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.12
Consensus pattern (14 bp):
AAAAATGGAAAAAG
Found at i:21354090 original size:88 final size:87
Alignment explanation
Indices: 21353941--21354183 Score: 315
Period size: 88 Copynumber: 2.8 Consensus size: 87
21353931 GAAATCACAA
* * ** *
21353941 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTACTTG
1 AGCCTTATCTCCTTGAGCAGAAGTGGAGTAGGTTGAAGATAGCAGATCTT-TCTTCCTGTACTGG
*
21354006 CAGCGAAGCAGATCGAATACACC
65 CAGCGAAGCAGATCGAAGACACC
* * *
21354029 AGCCTTATCTCCTTAAGGAGAAGTGGAGTAGGTTCAAGATAGCAGATCTTTCCTTCCTGTACTGG
1 AGCCTTATCTCCTTGAGCAGAAGTGGAGTAGGTTGAAGATAGCAGATCTTT-CTTCCTGTACTGG
* **
21354094 CAGTGAAGCAGATCGAAGACATT
65 CAGCGAAGCAGATCGAAGACACC
* * * *
21354117 AGCCTTATCTCCTTGAGCAGCAGTGGAATAGGTTGAAGATAGCAGATTTTATCTTCCTGTAATGG
1 AGCCTTATCTCCTTGAGCAGAAGTGGAGTAGGTTGAAGATAGCAGATCTT-TCTTCCTGTACTGG
21354182 CA
65 CA
21354184 ACGAGGTAGT
Statistics
Matches: 134, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.01
88 132 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (87 bp):
AGCCTTATCTCCTTGAGCAGAAGTGGAGTAGGTTGAAGATAGCAGATCTTTCTTCCTGTACTGGC
AGCGAAGCAGATCGAAGACACC
Found at i:21354622 original size:199 final size:200
Alignment explanation
Indices: 21354294--21354805 Score: 746
Period size: 199 Copynumber: 2.6 Consensus size: 200
21354284 CTACAGCCAC
* *
21354294 GAATCTTACTTCCCT-GGCGGTGTAGTGGAACAGATTGAAGCTA-AAAAGGCAAATCTTGCTTCC
1 GAATCTTACTT-CCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAACA-GCGAATCTTGCTTCC
* * *
21354357 CCGACATTACAGTTAAAAAGAATGAAGCTACAACAGCGAATCTTAGTTCCTAGGCGGTGCAGTGG
64 CCGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTAGGCGGTGCAGTGG
*
21354422 AACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTTCAGTT-AAAAGATTGAAGCTA
129 AACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTA
* *
21354486 TAACATT
194 CAACAGT
*
21354493 GAATCTTACTTCCTAGGCGGTGTAGTGGAACAGGTTGAAGCTACAACAGCGAATCTTGCTTCCCC
1 GAATCTTACTTCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCC
* *
21354558 GACATTGCAGTTAAAAAGATTGAAGCTACAACAACGAATCTTACTTCAC-AGGCGGTGTAGTGGA
66 GACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTC-CTAGGCGGTGCAGTGGA
* ** *
21354622 ACAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAGATTGAAGCTAC
130 ACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTAC
21354687 AACAGT
195 AACAGT
* * * * *
21354693 GAATCTTACTTCCCAGGCGGTGCAGTGGAACAAATTGAAGCTACAAC-GACGAGTTTTGCTTCCC
1 GAATCTTACTTCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAACAG-CGAATCTTGCTTCCC
* * *
21354757 CGACATTGCAGTTAAAAAGATTAAAGCTATAACAGCGAATCTTGCTTCC
65 CGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCC
21354806 CTAAAATTTT
Statistics
Matches: 283, Mismatches: 25, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
198 3 0.01
199 156 0.55
200 124 0.44
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (200 bp):
GAATCTTACTTCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCC
GACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCTAGGCGGTGCAGTGGAA
CAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACA
ACAGT
Found at i:21354739 original size:50 final size:50
Alignment explanation
Indices: 21354266--21354900 Score: 327
Period size: 50 Copynumber: 12.7 Consensus size: 50
21354256 TTTGGCATTA
* * * * *
21354266 CAGTGGAATAGATTGAAACTACAGCCA-CGAATCTTACTTCCCTGGCGGTG
1 CAGTGGAACAAATTGAAGCTACA-ACAGCGAATCTTACTTCCCAGGCGGTG
* * * * * * * ** *
21354316 TAGTGGAACAGATTGAAGCTA-AAAAGGCAAATCTTGCTTCCCCGACATTA
1 CAGTGGAACAAATTGAAGCTACAACA-GCGAATCTTACTTCCCAGGCGGTG
* * * * *
21354366 CAGT-TAAAAAGAATGAAGCTACAACAGCGAATCTTAGTTCCTAGGCGGTG
1 CAGTGGAACAA-ATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * * * * * ** *
21354416 CAGTGGAACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTT
1 CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * ** *
21354466 CAGT-TAA-AAGATTGAAGCTATAACATTGAATCTTACTTCCTAGGCGGTG
1 CAGTGGAACAA-ATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* ** * * * **
21354515 TAGTGGAACAGGTTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTG
1 CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * * *
21354565 CAGT-TAAAAAGATTGAAGCTACAACAACGAATCTTACTTCACAGGCGGTG
1 CAGTGGAACAA-ATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * ** * * * **
21354615 TAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGCTTCCCCGGCATTG
1 CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * *
21354665 CAGT-TAAAAAGATTGAAGCTACAACAGTGAATCTTACTTCCCAGGCGGTG
1 CAGTGGAACAA-ATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * * * * **
21354715 CAGTGGAACAAATTGAAGCTACAAC-GACGAGTTTTGCTTCCCCGACATTG
1 CAGTGGAACAAATTGAAGCTACAACAG-CGAATCTTACTTCCCAGGCGGTG
* * * * * **** *
21354765 CAGT-TAAAAAGATTAAAGCTATAACAGCGAATCTTGCTTCCCTA-AAATTT
1 CAGTGGAACAA-ATTGAAGCTACAACAGCGAATCTTACTTCCC-AGGCGGTG
* ** * * * * * **
21354815 TAGTAAAATAGATTGAAGCTACAACAGCTATTCTTACCTCCTTGGCGGTG
1 CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
* * *
21354865 TAGTGGAACAGATTGAAGCTACAACAGTGAATCTTA
1 CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTA
21354901 TTTTCCCGAC
Statistics
Matches: 422, Mismatches: 145, Indels: 36
0.70 0.24 0.06
Matches are distributed among these distances:
48 2 0.00
49 47 0.11
50 355 0.84
51 18 0.04
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (50 bp):
CAGTGGAACAAATTGAAGCTACAACAGCGAATCTTACTTCCCAGGCGGTG
Found at i:21354778 original size:150 final size:150
Alignment explanation
Indices: 21354266--21354940 Score: 532
Period size: 150 Copynumber: 4.5 Consensus size: 150
21354256 TTTGGCATTA
* * * * * * * ** * ** *
21354266 CAGTGGAATAGATTGAAACTACAGCCACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTG
1 CAGTGGAACAAATTGAAGCTACAACGACGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATTG
* * * *
21354331 AAGCTA-AAAAGGCAAATCTTGCTTCCCCGACATTACAGTTAAAAAGAATGAAGCTACAACAGCG
66 AAGCTACAACA-GCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCG
* *
21354395 AATCTTAGTTCCTAGGCGGTG
130 AATCTTACTTCCCAGGCGGTG
* * * * *
21354416 CAGTGGAACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTTCAGTT-AAAAGATTG
1 CAGTGGAACAAATTGAAGCTACAACGACGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATTG
* ** * ** * ** * ** * *
21354480 AAGCTATAACATTGAATCTTACTTCCTAGGCGGTGTAGTGGAACAGGTTGAAGCTACAACAGCGA
66 AAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGA
* * * **
21354545 ATCTTGCTTCCCCGACATTG
131 ATCTTACTTCCCAGGCGGTG
* * * * * * ** * ** *
21354565 CAGT-TAAAAAGATTGAAGCTACAACAACGAATCTTACTTCACAGGCGGTGTAGTGGAACAGATT
1 CAGTGGAACAA-ATTGAAGCTACAACGACGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATT
** * * *
21354629 GAAGCTACAATGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAGATTGAAGCTACAACAGTG
65 GAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCG
21354694 AATCTTACTTCCCAGGCGGTG
130 AATCTTACTTCCCAGGCGGTG
* * * *
21354715 CAGTGGAACAAATTGAAGCTACAACGACGAGTTTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 CAGTGGAACAAATTGAAGCTACAACGACGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATTG
* ** * ** *
21354780 AAGCTATAACAGCGAATCTTGCTTCCCTAAAATTTTAG-TAAAATAGATTGAAGCTACAACAGCT
66 AAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA-AGATTGAAGCTACAACAGCG
* * **
21354844 ATTCTTACCTCCTTGGCGGTG
130 AATCTTACTTCCCAGGCGGTG
* * * * * * **
21354865 TAGTGGAACAGATTGAAGCTACAAC-AGTGAATCTTATTTTCCCGACATTGCAATTAAACTGATT
1 CAGTGGAACAAATTGAAGCTACAACGA-CGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATT
21354929 GAAGCTACAACA
65 GAAGCTACAACA
21354941 ACAAACCTGA
Statistics
Matches: 399, Mismatches: 120, Indels: 12
0.75 0.23 0.02
Matches are distributed among these distances:
148 3 0.01
149 107 0.27
150 285 0.71
151 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (150 bp):
CAGTGGAACAAATTGAAGCTACAACGACGAATCTTACTTCCCCGACATTGCAGTTAAAAAGATTG
AAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTGAAGCTACAACAGCGA
ATCTTACTTCCCAGGCGGTG
Found at i:21354839 original size:100 final size:101
Alignment explanation
Indices: 21354275--21354808 Score: 715
Period size: 100 Copynumber: 5.3 Consensus size: 101
21354265 ACAGTGGAAT
* * *
21354275 AGATTGAAACTACAGCCA-CGAATCTTACTTCCCT-GGCGGTGTAGTGGAACAGATTGAAGCTAA
1 AGATTGAAGCTACA-ACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTAC
* * * *
21354338 AAAGGCAAATCTTGCTTCCCCGACATTACAGTTAAAA
65 AACGACGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
21354375 AGAATGAAGCTACAACAGCGAATCTTAGTT-CCTAGGCGGTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACA
* * *
21354439 ACGGCAAATCTTGCTTCCCCGACATTTCAGTT-AAA
66 ACGACGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* ** *
21354474 AGATTGAAGCTATAACATTGAATCTTACTT-CCTAGGCGGTGTAGTGGAACAGGTTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACA
21354538 AC-AGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
66 ACGA-CGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
21354574 AGATTGAAGCTACAACAACGAATCTTACTTCAC-AGGCGGTGTAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACA
* ** *
21354638 ATGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAA
66 ACGACGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
21354674 AGATTGAAGCTACAACAGTGAATCTTACTTCCC-AGGCGGTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACA
* *
21354738 ACGACGAGTTTTGCTTCCCCGACATTGCAGTTAAAA
66 ACGACGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
21354774 AGATTAAAGCTATAACAGCGAATCTTGCTTCCCTA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTA
21354809 AAATTTTAGT
Statistics
Matches: 385, Mismatches: 42, Indels: 13
0.88 0.10 0.03
Matches are distributed among these distances:
99 93 0.24
100 290 0.75
101 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (101 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGGCGGTGTAGTGGAACAGATTGAAGCTACA
ACGACGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:21360857 original size:42 final size:42
Alignment explanation
Indices: 21360718--21360858 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 42
21360708 TACTCGGTGA
* * *
21360718 AATCAGCACTTAGCAACCACC-TTATATTCAGTGATACGGGG
1 AATCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGG
* * *
21360759 AATCAGCACGTAGTAACC-CCTTTCACAATCAAGGATACGGTGG
1 AATCAGCACTTAGCAACCACCTTT-ACAATCAATGATACGG-GG
* * * *
21360802 AATCAGCAATTAGCAACCACCTTTAGAATCAATAATTCGGGG
1 AATCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGG
*
21360844 AATTAGCACTTAGCA
1 AATCAGCACTTAGCA
21360859 GCCCCTCGGG
Statistics
Matches: 81, Mismatches: 15, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
40 2 0.02
41 18 0.22
42 27 0.33
43 29 0.36
44 5 0.06
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
AATCAGCACTTAGCAACCACCTTTACAATCAATGATACGGGG
Found at i:21360867 original size:26 final size:26
Alignment explanation
Indices: 21360838--21360890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21360828 AATCAATAAT
*
21360838 TCGGGGAAT-TAGCACTTAGCAGCCCC
1 TCGGGGAATCT-GCACTTAGCAACCCC
21360864 TCGGGGAATCTGCACTTAGCAACCCC
1 TCGGGGAATCTGCACTTAGCAACCCC
21360890 T
1 T
21360891 TTTTGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.21
Consensus pattern (26 bp):
TCGGGGAATCTGCACTTAGCAACCCC
Found at i:21360909 original size:41 final size:41
Alignment explanation
Indices: 21360864--21361055 Score: 316
Period size: 41 Copynumber: 4.7 Consensus size: 41
21360854 TAGCAGCCCC
*
21360864 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAATGAT
*
21360905 TCGGGGAATCTGCACTTAGCAACCCCTTTTCGATCAATGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAATGAT
21360946 TCGGGGAATCTGCACTTAGCAA-CCCTTTTTCGATCAATGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTT-GATCAATGAT
*
21360987 TCGGGGAATTTGCACTTAGCAACCCCTTTTTGAT-AAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAA-TGAT
*
21361028 TCGGGAAATCTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
21361056 ACATTCAATG
Statistics
Matches: 142, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
40 9 0.06
41 125 0.88
42 8 0.06
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAATGAT
Found at i:21360912 original size:67 final size:68
Alignment explanation
Indices: 21360800--21360931 Score: 171
Period size: 67 Copynumber: 2.0 Consensus size: 68
21360790 AGGATACGGT
*
21360800 GGAATCAGCAATTAGCAACCACCTTTAGAATCAATAATTCGGGGAAT-TAGCACTTAGCAGCCCC
1 GGAATCAGCAATTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCT-GCACTTAGCAACCCC
21360864 TCGG
65 TCGG
* * * * *
21360868 GGAATCTGCACTTAGCAACC-CCTTTTTG-ATCAGTGATTCGGGGAATCTGCACTTAGCAACCCC
1 GGAATCAGCAATTAGCAACCACC-TTTAGAATCAATAATTCGGGGAATCTGCACTTAGCAACCCC
21360931 T
65 T
21360932 TTTCGATCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
67 33 0.59
68 23 0.41
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (68 bp):
GGAATCAGCAATTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCTGCACTTAGCAACCCCT
CGG
Found at i:21362556 original size:13 final size:14
Alignment explanation
Indices: 21362538--21362566 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
21362528 AAAATTGCTT
21362538 AAAAATCAAG-CAA
1 AAAAATCAAGTCAA
21362551 AAAAATCAAGTCAA
1 AAAAATCAAGTCAA
21362565 AA
1 AA
21362567 GCCACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.69, C:0.14, G:0.07, T:0.10
Consensus pattern (14 bp):
AAAAATCAAGTCAA
Found at i:21372097 original size:20 final size:19
Alignment explanation
Indices: 21372040--21372103 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
21372030 AGATGCATAT
*
21372040 CAGAGGCATCGAAGTTCAAG
1 CAGAGGCA-CGAAGTGCAAG
* *
21372060 CAGAGGCACAAATATGCAAG
1 CAGAGGCACGAA-GTGCAAG
*
21372080 CAGAGGCACCGAAGTGCAAA
1 CAGAGGCA-CGAAGTGCAAG
21372100 CAGA
1 CAGA
21372104 AGAATGAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.08
20 30 0.83
21 3 0.08
ACGTcount: A:0.41, C:0.22, G:0.28, T:0.09
Consensus pattern (19 bp):
CAGAGGCACGAAGTGCAAG
Found at i:21379550 original size:19 final size:20
Alignment explanation
Indices: 21379526--21379563 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21379516 GTTTCTTTTG
*
21379526 GCTTACAC-TATTTAAAGAT
1 GCTTACACTTATGTAAAGAT
21379545 GCTTACACTTATGTAAAGA
1 GCTTACACTTATGTAAAGA
21379564 ACTACGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (20 bp):
GCTTACACTTATGTAAAGAT
Found at i:21387274 original size:22 final size:22
Alignment explanation
Indices: 21387246--21387367 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
21387236 TTCCACATCC
21387246 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
21387268 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
21387292 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
21387315 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
21387339 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
21387362 ATCACA
1 ATCACA
21387368 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:21387281 original size:47 final size:47
Alignment explanation
Indices: 21387218--21387521 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
21387208 CCCTTCGGGA
* * *
21387218 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
21387265 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
21387312 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
21387359 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
21387406 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
21387453 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
21387502 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
21387522 GTACATCAAT
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:21396794 original size:44 final size:44
Alignment explanation
Indices: 21396696--21396936 Score: 164
Period size: 44 Copynumber: 5.2 Consensus size: 44
21396686 TAAGCAATAG
* * *
21396696 TGGAGCAGATCGAAGCCAGAAATCTTATCTCCCTGAGATTACAG
1 TGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAA
* * * *
21396740 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAA
1 TGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAA
** * *
21396784 TGGAGCAGATT-AAAATA-AAGGATCTTATCTCTCT-AAAGTTACAA
1 TGGAGCAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAA
* * *
21396828 TAGAGTAGATCGCATCAGATTGAAACCAGAAATCTTATTTCCCTGAGATTACAA
1 T---G--GA--G---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAA
* * * * *
21396882 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAG
1 TGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAA
*
21396926 TGGAGCGGATT
1 TGGAGCAGATT
21396937 AAAATAGAGG
Statistics
Matches: 151, Mismatches: 30, Indels: 32
0.71 0.14 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 105 0.70
47 2 0.01
49 4 0.03
51 2 0.01
54 23 0.15
55 6 0.04
56 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (44 bp):
TGGAGCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAA
Found at i:21396957 original size:142 final size:142
Alignment explanation
Indices: 21396701--21396987 Score: 466
Period size: 142 Copynumber: 2.0 Consensus size: 142
21396691 AATAGTGGAG
* * *
21396701 CAGATCGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCT
1 CAGATCGAAACCAGAAATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCTAGTAATCCT
*
21396766 ATCTCCCTGAGATTACAATGGAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAG
66 ATCTCCCTAAGATTACAATGGAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAG
21396831 AGTAGATCGCAT
131 AGTAGATCGCAT
* *
21396843 CAGATTGAAACCAGAAATCTTATTTCCCTGAGATTACAACGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATCGAAACCAGAAATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCTAGTAATCCT
* * * * *
21396908 ATCTCCCTAAGATTACAGTGGAGCGGATTAAAATAGAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTAAGATTACAATGGAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAG
*
21396973 AGTAGATTGCAT
131 AGTAGATCGCAT
21396985 CAG
1 CAG
21396988 GTCTTATCTC
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 133 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (142 bp):
CAGATCGAAACCAGAAATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCTAGTAATCCT
ATCTCCCTAAGATTACAATGGAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAATAG
AGTAGATCGCAT
Found at i:21397207 original size:100 final size:98
Alignment explanation
Indices: 21397055--21398481 Score: 1182
Period size: 100 Copynumber: 14.2 Consensus size: 98
21397045 CAAACGATGT
* * *
21397055 AGTGGAACAGATTAAATCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTTAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTCTT-CCCGACATTGCAG-TTAAAAGATTAA
* * * *
21397120 AGCTACAGCAGCAAATCTTACCTCCCAGGCAGTGT
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* * *
21397155 AGTGGAACAGATTAAAACCACAATGGTGAATCTTTCCTCCCTGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTCTTCCC-GACATTGCAGTT-AAAAGATTAA
* * * * ** *
21397220 AGCTACAGCAGCAAATCTTACCTCCCAAGTGGTGT
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* ** *
21397255 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGT-GTCATTGACATTGCAGTTGAAAAGACTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTT-TCTTC-CCGACATTGCAGTT-AAAAGATTA
* * * * * * *
21397319 AAGCCACAGCGGCGAGTGTTACTTCCCTGGCAATGC
63 AAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* * *
21397355 AGT-GAAGCAAATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTA
1 AGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTA
* * * * *
21397419 AAG-TCACAA-TGATGAATCTCACTCTCTCAGCCAGTGC
63 AAGCT-ACAACAG-CGAATCTTACT-TCCCAGGCAGTGC
* * * * *
21397456 AGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTAA
* * *
21397521 AGCTACAATAGTGAATCTTACTTCCTAGGCAGTGC
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
** *
21397556 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTC-TCATTGACATTGCAGTTGAAAAGACTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTT-TCTTC-CCGACATTGCAGTT-AAAAGATTA
* * * * * ** *
21397620 AAGCCACAGCGGCGAGTGTTACTTCCTTGGCAATGC
63 AAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* * * *
21397656 AGT-GAAGCAGATTAAAGCCACAACGGTAAATCTTACTTTCCCAACATTGCTGTTAAAAGGATTA
1 AGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTA
* * *
21397720 AAG-TCACAAC-GACGAATCTCACTCTCTCAGCCAGTGC
63 AAGCT-ACAACAG-CGAATCTTACT-TCCCAGGCAGTGC
* * * * * * * ** *
21397757 AGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGAAATTACAACTAGAAGGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTA-AAAGATTAA
*
21397822 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGT
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* *
21397857 AATGGAACAGATTAAAGCCACAACGGTGAATCTTGTC-TCCCTGACATTGCAGTTGAAAAGACTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTT-TCTTCCC-GACATTGCAGTT-AAAAGATTA
* * * * *
21397921 AAGCCACAGCGGC-AAGTGTTACTTCCCTA-GCAATGC
63 AAGCTACAACAGCGAA-TCTTACTTCCC-AGGCAGTGC
* *
21397957 AGT-GAAGCAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTA
1 AGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTA
* * *
21398021 AAG-TCACAAC-GATGAATC-TAGCTCTCTCAGCCAGTGC
63 AAGCT-ACAACAG-CGAATCTTA-CT-TCCCAGGCAGTGC
* * * * * *
21398058 AGTAGAGCAGATTAAAGCCACATCGGTGAATCTTACTTTCCCAACATTGCAGCTAAAAGGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTAA
* *
21398123 AGCTACAACAACGAATCTTACTTCTCAGGCAGTGC
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
**
21398158 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTC-TCCCTGACATTGCAGTTGAAAAGGCTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTT-TCTTCCC-GACATTGCAGTT-AAAAGATTA
* * * * ** *
21398222 AAGCCACAGCGGC-AAGTGTTACTTCCTTGGCAATGC
63 AAGCTACAACAGCGAA-TCTTACTTCCCAGGCAGTGC
* * *
21398258 AGT-GAAGCAGATTAAAGCCACAACAGTAAATCTTACTTTCCCGACATTGCAGTTAAAAGGATTA
1 AGTGGAA-CAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAA-GATTA
* * * * *
21398322 AAG-TCACAATACCGAATCTCACTCTCTCAGCCAGTGC
63 AAGCT-ACAACAGCGAATCTTACT-TCCCAGGCAGTGC
* ** * * * *
21398359 AGTAGAGTAGATTAAAGCCACATCGGTGAATCTTGCTTTCCAGACATTGCAGCTAAAAGTATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTC-TTCCCGACATTGCAGTTAAAAG-ATTAA
*
21398424 AGCTACAACAGCGAATCTTACTTCCCAAGCAGTGC
64 AGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* *
21398459 AGTGGAACAGATTGAAGCTACAA
1 AGTGGAACAGATTAAAGCCACAA
21398482 AAGCAAATCT
Statistics
Matches: 1069, Mismatches: 197, Indels: 122
0.77 0.14 0.09
Matches are distributed among these distances:
99 54 0.05
100 658 0.62
101 339 0.32
102 18 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (98 bp):
AGTGGAACAGATTAAAGCCACAACGGTGAATCTTTCTTCCCGACATTGCAGTTAAAAGATTAAAG
CTACAACAGCGAATCTTACTTCCCAGGCAGTGC
Found at i:21397624 original size:301 final size:301
Alignment explanation
Indices: 21397062--21398481 Score: 2136
Period size: 301 Copynumber: 4.7 Consensus size: 301
21397052 TGTAGTGGAA
* * * *
21397062 CAGATTAAATCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTTAAAA-GATTAAAG-CTA
1 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAG-TTAAAAGGATTAAAGTC-A
* * * * * * * * *
21397125 CAGC-AGCAAATCTTAC-CTCCCAGGCAGTGTAGTGGAACAGATTAAAACCACAAT-GGTGAATC
64 CAACGA-CGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCAC-ATCGGTGAATC
* * * * * * * * **
21397187 TTTC-CTCCCTGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCAAATCTTACCTCCCAAGTG
127 TTGCTTTCCC-GACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCA
* * *
21397251 GTGTAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTGTCATTGACATTGCAGTTGAAAAGA
191 GTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCACTGACATTGCAGTTGAAAAGA
*
21397316 CTAAAGCCACAGCGGCGAGTGTTACTTCCCTGGCAATGCAGTGAAG
256 CTAAAGCCACAGCGGCAAGTGTTACTTCCCTGGCAATGCAGTGAAG
*
21397362 CAAATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
1 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
* *
21397427 ATGATGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGC
66 ACGACGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGC
* * *
21397492 TTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAATAGTGAATCTTACTTCCTAGGCAGTGCA
131 TTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCA
*
21397557 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCATTGACATTGCAGTTGAAAAGACTAAA
196 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCACTGACATTGCAGTTGAAAAGACTAAA
* *
21397622 GCCACAGCGGCGAGTGTTACTTCCTTGGCAATGCAGTGAAG
261 GCCACAGCGGCAAGTGTTACTTCCCTGGCAATGCAGTGAAG
* * *
21397663 CAGATTAAAGCCACAACGGTAAATCTTACTTTCCCAACATTGCTGTTAAAAGGATTAAAGTCACA
1 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
21397728 ACGACGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGC
66 ACGACGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGC
* * * * * *
21397793 TTTCTCGAAATTACAACTAGAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGTA
131 TTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCA
* *
21397858 ATGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCCCTGACATTGCAGTTGAAAAGACTAAA
196 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCACTGACATTGCAGTTGAAAAGACTAAA
*
21397923 GCCACAGCGGCAAGTGTTACTTCCCTAGCAATGCAGTGAAG
261 GCCACAGCGGCAAGTGTTACTTCCCTGGCAATGCAGTGAAG
21397964 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
1 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
* *
21398029 ACGATGAATCT-AGCTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTA
66 ACGACGAATCTCA-CTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTG
* * *
21398093 CTTTCCCAACATTGCAGCTAAAAGGATTAAAGCTACAACAACGAATCTTACTTCTCAGGCAGTGC
130 CTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* *
21398158 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCCCTGACATTGCAGTTGAAAAGGCTAA
195 AGTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCACTGACATTGCAGTTGAAAAGACTAA
*
21398223 AGCCACAGCGGCAAGTGTTACTTCCTTGGCAATGCAGTGAAG
260 AGCCACAGCGGCAAGTGTTACTTCCCTGGCAATGCAGTGAAG
* *
21398265 CAGATTAAAGCCACAACAGTAAATCTTACTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
1 CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
* *
21398330 A-TACCGAATCTCACTCTCTCAGCCAGTGCAGTAGAGTAGATTAAAGCCACATCGGTGAATCTTG
66 ACGA-CGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTG
* * *
21398394 CTTTCCAGACATTGCAGCTAAAAGTATTAAAGCTACAACAGCGAATCTTACTTCCCAAGCAGTGC
130 CTTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGC
* *
21398459 AGTGGAACAGATTGAAGCTACAA
195 AGTGGAACAGATTAAAGCCACAA
21398482 AAGCAAATCT
Statistics
Matches: 1026, Mismatches: 85, Indels: 17
0.91 0.08 0.02
Matches are distributed among these distances:
299 6 0.01
300 62 0.06
301 953 0.93
302 5 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (301 bp):
CAGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTGCAGTTAAAAGGATTAAAGTCACA
ACGACGAATCTCACTCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTGC
TTTCCCGACATTGCAGCTAAAAGGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCA
GTGGAACAGATTAAAGCCACAACGGTGAATCTTGTCTCACTGACATTGCAGTTGAAAAGACTAAA
GCCACAGCGGCAAGTGTTACTTCCCTGGCAATGCAGTGAAG
Found at i:21398294 original size:50 final size:49
Alignment explanation
Indices: 21397059--21398448 Score: 512
Period size: 50 Copynumber: 27.7 Consensus size: 49
21397049 CGATGTAGTG
* * * **
21397059 GAACAGATTAAATCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAG-T
* * * * * ** * ** * * *
21397109 TAAAAGATTAAAGCTACAGCAGCAAATCTTACCTCCCAGGCAGTGTAGT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
* * * * *
21397158 GGAACAGATTAAAACCACAATGGTGAATCTTTCCTCCCTGACATTGCAGTT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAG-T
* * * * * ** * * *
21397209 AAAAAGATTAAAGCTACAGCAGCAAATCTTACCTCC--CA-AGTGGTGTAGT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACA-T--TGCAGT
* *
21397258 GGAACAGATTAAAGCCACAACGGTGAATCTT-GTGTCATTGACATTGCAGTT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACT-TCCTTGACATTGCAG-T
* * * * * * * * *
21397309 GAAAAGACTAAAGCCACAGCGGCGAGTGTTACTTCCCTGGCAATGCAGT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
* * * *
21397358 GAAGCAAATTAAAGCCACAACGGTAAATCTTGCTTTCC-CGACATTGCAGT
1 GAA-CAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAGT
* * * * * * * * *
21397408 TAAAAGGATTAAAGTCACAATGATGAATCTCAC-TCTCTCAGCCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTC-CT-TGACATTGCAGT
* * * *
21397459 AGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTTCC-CGACATTGCAGCT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAG-T
* * ** * * *
21397510 -AAAAGGATTAAAGCTACAATAGTGAATCTTACTTCCTAGGCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
* *
21397559 GGAACAGATTAAAGCCACAACGGTGAATCTT-GTCTCATTGACATTGCAGTT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACT-TCCTTGACATTGCAG-T
* * * * * * * *
21397610 GAAAAGACTAAAGCCACAGCGGCGAGTGTTACTTCCTTGGCAATGCAGT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
* ** *
21397659 GAAGCAGATTAAAGCCACAACGGTAAATCTTACTTTCC-CAACATTGCTGT
1 GAA-CAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAGT
* * * ** * * * *
21397709 TAAAAGGATTAAAGTCACAACGACGAATCTCAC-TCTCTCAGCCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTC-CT-TGACATTGCAGT
* * * * * * * *
21397760 AGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGAAATTACAACT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGC-AGT
* * * * ** * * * *
21397811 AGAA-GGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGTAAT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
* *
21397860 GGAACAGATTAAAGCCACAACGGTGAATCTT-GTCTCCCTGACATTGCAGTT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACT-TCCTTGACATTGCAG-T
* * * * * * *
21397911 GAAAAGACTAAAGCCACAGCGG-CAAGTGTTACTTCCCT-AGCAATGCAGT
1 GAACAGATTAAAGCCACAACGGTGAA-TCTTACTTCCTTGA-CATTGCAGT
* * *
21397960 GAAGCAGATTAAAGCCACAACGGTAAATCTTGCTTTCC-CGACATTGCAGT
1 GAA-CAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAGT
* * * * * * *
21398010 TAAAAGGATTAAAGTCACAACGATGAATC-TAGC-TCTCTCAGCCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTA-CTTC-CT-TGACATTGCAGT
* * **
21398061 AGAGCAGATTAAAGCCACATCGGTGAATCTTACTTTCC-CAACATTGCAGCT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAG-T
* * *** * * *
21398112 -AAAAGGATTAAAGCTACAACAACGAATCTTACTT-CTCAGGCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTCCT-TGACATTGCAGT
* *
21398161 GGAACAGATTAAAGCCACAACGGTGAATCTT-GTCTCCCTGACATTGCAGTT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTACT-TCCTTGACATTGCAG-T
* ** * * * * *
21398212 GAAAAGGCTAAAGCCACAGCGG-CAAGTGTTACTTCCTTGGCAATGCAGT
1 GAACAGATTAAAGCCACAACGGTGAA-TCTTACTTCCTTGACATTGCAGT
* * *
21398261 GAAGCAGATTAAAGCCACAACAGTAAATCTTACTTTCC-CGACATTGCAGT
1 GAA-CAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAGT
* * * **** * * * *
21398311 TAAAAGGATTAAAGTCACAATACCGAATCTCAC-TCTCTCAGCCAGTGCAGT
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTC-CT-TGACATTGCAGT
** * * *
21398362 AGAGTAGATTAAAGCCACATCGGTGAATCTTGCTTTCC-AGACATTGCAGCT
1 -GAACAGATTAAAGCCACAACGGTGAATCTTAC-TTCCTTGACATTGCAG-T
* * * *
21398413 -AAAAGTATTAAAGCTACAACAGCGAATCTTACTTCC
1 GAACAG-ATTAAAGCCACAACGGTGAATCTTACTTCC
21398449 CAAGCAGTGC
Statistics
Matches: 959, Mismatches: 301, Indels: 161
0.67 0.21 0.11
Matches are distributed among these distances:
47 1 0.00
48 11 0.01
49 59 0.06
50 702 0.73
51 163 0.17
52 16 0.02
53 7 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (49 bp):
GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCTTGACATTGCAGT
Found at i:21403302 original size:24 final size:24
Alignment explanation
Indices: 21403270--21403319 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
21403260 CGAGTTATAA
21403270 AATTTCATCTAAATTAAAACTTTC
1 AATTTCATCTAAATTAAAACTTTC
21403294 AATTTCATCTAAATTAAAACTTTC
1 AATTTCATCTAAATTAAAACTTTC
21403318 AA
1 AA
21403320 ATTTTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTTCATCTAAATTAAAACTTTC
Found at i:21405003 original size:8 final size:8
Alignment explanation
Indices: 21404983--21405019 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
21404973 TATATATACT
21404983 AAATAA-A
1 AAATAATA
21404990 ATAATAATA
1 A-AATAATA
21404999 AAATAATA
1 AAATAATA
21405007 AAATAATA
1 AAATAATA
21405015 AAATA
1 AAATA
21405020 TCATTTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 1 0.04
8 25 0.89
9 2 0.07
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:21406877 original size:50 final size:50
Alignment explanation
Indices: 21406753--21407135 Score: 434
Period size: 50 Copynumber: 7.7 Consensus size: 50
21406743 AATCATAACA
* ** *
21406753 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TCTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCT-CGG
* * * * ** *
21406802 TGCCAATGCCATATCCTAGATATGGTCTTACATAGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* **
21406852 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * **
21406902 TGCCAATGCCATGTCCCTGACATGGTATTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
21406952 TGCCAAT-TCATGTCCCAAACATGGTCTTACACAGGG-CCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATCTCGG
**
21407001 TGCCAATGCCATGTCCCAGACATGGTCTTACACAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
21407051 TGCCAACGTCATGTCCCAGGCATGGTCTTACATGGGACCTCTCATTTGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
21407101 TGCCAACGCCATGTCCCAAACATGGTCTTACATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG
21407136 CTCACATATT
Statistics
Matches: 288, Mismatches: 40, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
48 6 0.02
49 75 0.26
50 207 0.72
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:21406881 original size:99 final size:98
Alignment explanation
Indices: 21406753--21407132 Score: 332
Period size: 99 Copynumber: 3.8 Consensus size: 98
21406743 AATCATAACA
* * * *
21406753 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCTCTACTGCCAATGCCATATCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCTCT-CTGCCAATGCCATGTCC
* * ** *
21406818 TAGATATGGTCTTACATAGGAGTTCTCATATCGG
65 TAGACATGGTCTTACACAGGACCTCTCATCTCGG
* ** * **
21406852 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TCTTATCTCTCTGCCAATGCCATGT-
* ***
21406917 CCT-GACATGGTATTACGGGGGACCTCTCATCTCGG
63 CCTAGACATGGTCTTACACAGGACCTCTCATCTCGG
* * * * * **
21406952 TGCCAAT-TCATGTCCCAAACATGGTCTTACACAGGGCCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGG-ATCTTATCTCTCTGCCAATGCCATGTC
*
21407016 CCAGACATGGTCTTACACAGGACCTCTCATCTCGG
64 CTAGACATGGTCTTACACAGGACCTCTCATCTCGG
* * * * * *** *
21407051 TGCCAACGTCATGTCCCAGGCATGGTCTTACATGGGACCTCTCATTTGGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TCTTATCTCTCTGCCAATGCCATGTC
* *
21407116 CCAAACATGGTCTTACA
64 CTAGACATGGTCTTACA
21407133 TGGCTCACAT
Statistics
Matches: 234, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
98 2 0.01
99 116 0.50
100 107 0.46
101 9 0.04
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (98 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCTCTCTGCCAATGCCATGTCCT
AGACATGGTCTTACACAGGACCTCTCATCTCGG
Found at i:21407023 original size:149 final size:150
Alignment explanation
Indices: 21406753--21407132 Score: 437
Period size: 149 Copynumber: 2.5 Consensus size: 150
21406743 AATCATAACA
* * * ** * * *
21406753 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TCTAC--TGCCAATGCCATA
1 TGCCAACGCCATGTCCCAGACATGGTATTACAGGGGA-CCTCTCATCT-CGGTGCCAACGCCATG
* * * * * *
21406815 TCCTAGATATGGTCTTACATAGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCT
64 TCCCAAACATGGTCTTACACAGGAGCTCTCATATCGGTGCCAATGCCATGTCCCAGACATGGTCT
***
21406880 TACGGGGGACCTCTCATCTCGG
129 TACACAGGACCTCTCATCTCGG
* * * **
21406902 TGCCAATGCCATGTCCCTGACATGGTATTACGGGGGACCTCTCATCTCGGTGCCAA-TTCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTC
*
21406966 CCAAACATGGTCTTACACAGG-GCCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTT
66 CCAAACATGGTCTTACACAGGAG-CTCTCATATCGGTGCCAATGCCATGTCCCAGACATGGTCTT
21407030 ACACAGGACCTCTCATCTCGG
130 ACACAGGACCTCTCATCTCGG
* * * * * *
21407051 TGCCAACGTCATGTCCCAGGCATGGTCTTACATGGGACCTCTCATTTGGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTC
21407116 CCAAACATGGTCTTACA
66 CCAAACATGGTCTTACA
21407133 TGGCTCACAT
Statistics
Matches: 194, Mismatches: 32, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
148 5 0.03
149 160 0.82
150 29 0.15
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (150 bp):
TGCCAACGCCATGTCCCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTC
CCAAACATGGTCTTACACAGGAGCTCTCATATCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
CACAGGACCTCTCATCTCGG
Found at i:21409683 original size:51 final size:50
Alignment explanation
Indices: 21409607--21409800 Score: 187
Period size: 51 Copynumber: 3.8 Consensus size: 50
21409597 TATAAACACG
* * *
21409607 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGATA-GATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTATCGA-AGGAT-ATGGTCACA
* * * *
21409658 TGTGTAGTACTATGTGCAGGCTACTATGTGTACTGGAAGGCTTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTA-TCGAAGGATATGGTCACA
* * * * *
21409709 TGTGTAGTACTATATGCAGGCTACTATGTG-AACTGAA-AAGTTTGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTATC-GAAGGA-TATGGTCACA
* * *
21409759 TGTGTAGTACTACGTGAAGGCTACTATGTGTATCGAATGATA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAAGGATA
21409801 ATAATTACAC
Statistics
Matches: 117, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
50 43 0.37
51 69 0.59
52 5 0.04
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAAGGATATGGTCACA
Found at i:21409780 original size:50 final size:51
Alignment explanation
Indices: 21409653--21409788 Score: 193
Period size: 51 Copynumber: 2.7 Consensus size: 51
21409643 TAGATAATGG
* * * *
21409653 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACTGGAAGGCTTTGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACTGAAAAGCTTTGA
* *
21409704 TCACGTGTGTAGTACTATATGCAGGCTACTATGTGAACTGAAAAG-TTTGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACTGAAAAGCTTTGA
* *
21409754 TCACATGTGTAGTACTACGTGAAGGCTACTATGTG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTG
21409789 TATCGAATGA
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 35 0.47
51 40 0.53
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACTGAAAAGCTTTGA
Found at i:21416164 original size:3 final size:3
Alignment explanation
Indices: 21416158--21416183 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
21416148 TCCATTGGAG
21416158 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
21416184 TCCATTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:21416216 original size:36 final size:36
Alignment explanation
Indices: 21416116--21416219 Score: 95
Period size: 36 Copynumber: 2.9 Consensus size: 36
21416106 GATAGAAACC
21416116 TTGGTTTCTGTGGAAAGCAAGTTTGAAGAAGATCCA
1 TTGGTTTCTGTGGAAAGCAAGTTTGAAGAAGATCCA
***** * * **
21416152 TTGGAGGAAGAAGAAGAAG-AAG-AAGAAGAAGATCCA
1 TTGGTTTCTG-TGGA-AAGCAAGTTTGAAGAAGATCCA
21416188 TTGGTTTCTGTGGAAAGCAAGTTTGAAGAAGA
1 TTGGTTTCTGTGGAAAGCAAGTTTGAAGAAGA
21416220 AGGTGAAGAA
Statistics
Matches: 46, Mismatches: 18, Indels: 8
0.64 0.25 0.11
Matches are distributed among these distances:
34 3 0.07
35 5 0.11
36 30 0.65
37 5 0.11
38 3 0.07
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (36 bp):
TTGGTTTCTGTGGAAAGCAAGTTTGAAGAAGATCCA
Found at i:21436145 original size:43 final size:42
Alignment explanation
Indices: 21436092--21436191 Score: 137
Period size: 43 Copynumber: 2.4 Consensus size: 42
21436082 TTTCGTTTAT
* * ** *
21436092 CCCTAATGGGTTTTCGTTCAGCTCTTTTGAGCTTCAGTTTAA
1 CCCTTATGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAA
*
21436134 CCCTTATTGGGTTTCCGTTCAGCTCTTACGAGCTTCCGTTCAA
1 CCCTTA-TGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAA
21436177 CCCTTATGGGTTTCC
1 CCCTTATGGGTTTCC
21436192 ATTTAGCACT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 14 0.27
43 37 0.73
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (42 bp):
CCCTTATGGGTTTCCGTTCAGCTCTTACGAGCTTCAGTTCAA
Found at i:21436191 original size:21 final size:21
Alignment explanation
Indices: 21436132--21436191 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
21436122 GCTTCAGTTT
21436132 AACCCTTATTGGGTTTCCGTTC
1 AACCCTTA-TGGGTTTCCGTTC
* * * * *
21436154 AGCTCTTACGAGCTTCCGTTC
1 AACCCTTATGGGTTTCCGTTC
21436175 AACCCTTATGGGTTTCC
1 AACCCTTATGGGTTTCC
21436192 ATTTAGCACT
Statistics
Matches: 28, Mismatches: 10, Indels: 1
0.72 0.26 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.37
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCGTTC
Found at i:21443349 original size:11 final size:12
Alignment explanation
Indices: 21443333--21443365 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
21443323 GAACAGAAAC
21443333 AAAAATAAAA-T
1 AAAAATAAAATT
21443344 AAAAATAAAATT
1 AAAAATAAAATT
21443356 ACAAAATAAA
1 A-AAAATAAA
21443366 TTTTGTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
12 2 0.10
13 8 0.40
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:21446706 original size:21 final size:20
Alignment explanation
Indices: 21446668--21446726 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
21446658 CTGAGTGTGC
* **
21446668 TGATTGTAGTTCTGTTGTTGT
1 TGATTGTAATTCCCTTGTT-T
21446689 TGATTGTAATTCCCTTGTTT
1 TGATTGTAATTCCCTTGTTT
* *
21446709 TGAATTATAATTTCCTTG
1 TG-ATTGTAATTCCCTTG
21446727 AGTAGATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.17, C:0.10, G:0.19, T:0.54
Consensus pattern (20 bp):
TGATTGTAATTCCCTTGTTT
Found at i:21462940 original size:50 final size:50
Alignment explanation
Indices: 21462816--21463107 Score: 259
Period size: 50 Copynumber: 5.7 Consensus size: 50
21462806 GATAATAACA
* * ** *
21462816 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTTTCATCT-CGG
* * * * * *
21462865 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGA-GTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTT-TCATCTCGG
* * * ** *
21462915 TGCCCATGCCATGTCCCACAAATGGTCTTACGGGGGACCTTTCATCTCAG
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTTTCATCTCGG
* *
21462965 TGCCAACGCCATGTCCCA-AACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGAA-ATGGTCTTACATGGGACCTTTCATCTCGG
* * *
21463015 TGCCAACGCCATGTCCTAGACATTGTCTTACATGGGACCTTTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTTTC---ATCTC--GG
* *
21463070 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGA
21463108 TCTCTTTACC
Statistics
Matches: 202, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
48 4 0.02
49 40 0.20
50 115 0.57
51 3 0.01
53 4 0.02
55 2 0.01
56 34 0.17
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTTTCATCTCGG
Done.