Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 73 of 185
Found at i:22348810 original size:388 final size:387
Alignment explanation
Indices: 22348349--22349134 Score: 850
Period size: 388 Copynumber: 2.0 Consensus size: 387
22348339 GCCATTCTTG
* * * * * *
22348349 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACTTCTTCAGTCTGCTCCACTGCATTCTCAG
1 ATCTGCTTCACTACGGCTTAGGGAGATAAGATCTACATCCTCAGTCTGCTCCACTACATGCTCAG
* * * **
22348414 AGAGATAAGAACTAATGC-GA-TCTACTCTACTGCAACCTCAGAGAGCTAAGATCTTTTATTTTA
66 AGAGATAAGAACTAATGCTCATTCTACTCTACTGCAACCTCAGAGAGATAAGA-C-TTGA-TGCA
* * * * * * * * * **
22348477 ATCCGCTCCATTGTAACTTCAGGGAGATAGGAT-TACTGGCTTCAATCTGCTCCGCTACGGCTT-
128 ATCCACTCCACTGTAACCTCAGAGAGATAAGATCT-CTGACTTCAACCCGCTCCACTACAACTTC
* * * * *
22348540 AGGAAGATAAGA-T-CTGCCATCCTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGGTTTGTTT
192 AGGAAGATAAGATTACTGCC-TCC-T-ATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTT
**
22348603 CTTCAGTCTACTCTGCTGCAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACCT
254 CTTCAGTCTACTCCACTGCAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACCT
* * **
22348668 CAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTAATGGC
319 CAGAGAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAACGAGATAGGATTAATGGC
22348733 TTCA
384 TTCA
* * *
22348737 ATCTGCTTCGCTACGGCTTAGGGAGATAAGATCTGCCATCCTC-GATCTGCTCCACTAC-TGCTT
1 ATCTGCTTCACTACGGCTTAGGGAGATAAGATCT-ACATCCTCAG-TCTGCTCCACTACATGCTC
* ** ** * * * * *
22348800 AGGGAGATAAGATTTGTTTCTTCATTCTGCTCTGCTGCAACCTCAGAGAGATAATACTTGATGCG
64 AGAGAGATAAGAACTAATGC-TCATTCTACTCTACTGCAACCTCAGAGAGATAAGACTTGATGCA
* * * * * * *
22348865 ATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCA
128 ATCCACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAACCCGCTCCACTACAACTTCA
* * * * * *
22348930 GGGAGATAGGATTACTGGCTTCTATCTACTCCGCTACGGCTTAGGGAGATAAGATCTGTTTCTTT
193 GGAAGATAAGATTACTGCCTCCTATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTC
* * * *
22348995 AGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAATCTCAGA
258 AGTCTACTCCACTGCAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGA
*
22349060 GAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAACGAGATAGGATTATTGGCTTCA
323 GAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAACGAGATAGGATTAATGGCTTCA
22349125 ATCTGCTTCA
1 ATCTGCTTCA
22349135 TTGCCAACCC
Statistics
Matches: 324, Mismatches: 65, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
388 256 0.79
389 32 0.10
390 5 0.02
391 31 0.10
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (387 bp):
ATCTGCTTCACTACGGCTTAGGGAGATAAGATCTACATCCTCAGTCTGCTCCACTACATGCTCAG
AGAGATAAGAACTAATGCTCATTCTACTCTACTGCAACCTCAGAGAGATAAGACTTGATGCAATC
CACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAACCCGCTCCACTACAACTTCAGGA
AGATAAGATTACTGCCTCCTATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGT
CTACTCCACTGCAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAG
ATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAACGAGATAGGATTAATGGCTTCA
Found at i:22348880 original size:172 final size:172
Alignment explanation
Indices: 22348702--22349115 Score: 415
Period size: 172 Copynumber: 2.4 Consensus size: 172
22348692 AATCCGCTCC
* * * * * * * **
22348702 ACTGTAACTTCAGGGAGATAGGAT-TAATGGCTTCAATCTGCTTCGCTACGGCTT-AGGGAGATA
1 ACTGTAACTTCAGAGAGATAAGATCT-ATGACTTCAACCCGCTCCACTACAACTTCAGGGAGATA
* * * *
22348765 AGA-T-CTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTTTCTTCATTCT
65 AGATTACTGCC-T--TCGATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCT
** * *
22348828 GCTCTGCTGCAACCTCAGAGAGATAATACTTGATGCGATCTACTCT
127 GCTCCACTGCAACCTCAGAGAGATAAGACCTGATGCGATCTACTCT
* * * * * * *
22348874 ACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAG
1 ACTGTAACTTCAGAGAGATAAGATCTATGACTTCAACCCGCTCCACTACAACTTCAGGGAGATAA
* * * *
22348939 GATTACTGGCTTCTATCTACTCCGCTACGGCTTAGGGAGATAAGATCTGTTTCTTTAGTCTGCTC
66 GATTACTGCCTTCGATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCTGCTC
*
22349004 CACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCT
131 CACTGCAACCTCAGAGAGATAAGACCTGATGCGATCTACTCT
* * * * * **
22349046 ACTGTAA-TCTCAGAGAGATAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAACGAGATA
1 ACTGTAACT-TCAGAGAGATAAGATCTATGACTTCAACCCGCTCCACTACAACTTCAGGGAGATA
*
22349110 GGATTA
65 AGATTA
22349116 TTGGCTTCAA
Statistics
Matches: 205, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
172 187 0.91
173 12 0.06
174 2 0.01
175 4 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (172 bp):
ACTGTAACTTCAGAGAGATAAGATCTATGACTTCAACCCGCTCCACTACAACTTCAGGGAGATAA
GATTACTGCCTTCGATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCTGCTC
CACTGCAACCTCAGAGAGATAAGACCTGATGCGATCTACTCT
Found at i:22348936 original size:85 final size:85
Alignment explanation
Indices: 22348834--22349097 Score: 295
Period size: 85 Copynumber: 3.1 Consensus size: 85
22348824 TTCTGCTCTG
*
22348834 CTGCAACCTCAGAGAGATAATACTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAATACTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATC
22348899 TTTTATTTTAACCCGCTCCA
66 TTTTATTTTAACCCGCTCCA
* * * * * * *
22348919 CTGCAACTTCAGGGAGATAGGATTACTGGCTTCTATCTACTC--C-GCT-ACGGCTTAGGGAGAT
1 CTGCAACCTCAGGGAGATA--A-TACTTGATGCGATCTACTCTACTG-TAAC--CTCAGAGAGAT
* ** *
22348980 AAGATCTGTTT-CTTTAGTCTGCTCCA
60 AAGATCT-TTTATTTTAACCCGCTCCA
* * *
22349006 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAATCTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAATACTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATC
22349071 TTTTATTTTAACCCGCTCCA
66 TTTTATTTTAACCCGCTCCA
22349091 CTGCAAC
1 CTGCAAC
22349098 TTCAACGAGA
Statistics
Matches: 141, Mismatches: 26, Indels: 24
0.74 0.14 0.13
Matches are distributed among these distances:
84 16 0.11
85 55 0.39
86 4 0.03
87 48 0.34
88 18 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (85 bp):
CTGCAACCTCAGGGAGATAATACTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATC
TTTTATTTTAACCCGCTCCA
Found at i:22349123 original size:172 final size:172
Alignment explanation
Indices: 22348781--22349128 Score: 552
Period size: 172 Copynumber: 2.0 Consensus size: 172
22348771 GCCATCCTCG
* * * * **
22348781 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGTTTCTTCATTCTGCTCTGCTGCAACCTCAG
1 ATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCTGCTCCACTGCAACCTCAG
* *
22348846 AGAGATAATACTTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAAC
66 AGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAAC
** *
22348911 CCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCT
131 CCGCTCCACTGCAACTTCAACGAGATAGGATTACTGGCTTCA
* *
22348953 ATCTACTCCGCTACGGCTTAGGGAGATAAGATCTGTTTCTTTAGTCTGCTCCACTGCAACCTCAG
1 ATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCTGCTCCACTGCAACCTCAG
* *
22349018 GGAGATAAGACCTGATGCGATCTACTCTACTGTAATCTCAGAGAGATAAGATCTTTTATTTTAAC
66 AGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAAC
*
22349083 CCGCTCCACTGCAACTTCAACGAGATAGGATTATTGGCTTCA
131 CCGCTCCACTGCAACTTCAACGAGATAGGATTACTGGCTTCA
22349125 ATCT
1 ATCT
22349129 GCTTCATTGC
Statistics
Matches: 160, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
172 160 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (172 bp):
ATCTACTCCACTACGGCTTAGGGAGATAAGATCTGTTTCTTCAGTCTGCTCCACTGCAACCTCAG
AGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCTTTTATTTTAAC
CCGCTCCACTGCAACTTCAACGAGATAGGATTACTGGCTTCA
Found at i:22349377 original size:88 final size:88
Alignment explanation
Indices: 22349211--22349378 Score: 192
Period size: 88 Copynumber: 1.9 Consensus size: 88
22349201 CTAATGTCTT
* * ** * * ** * *
22349211 CGATCTACTTCGCTGCCAGTATAGGAAGGTAAGATCTACCATTTTCAACCTGTTCCGCTGCTGCT
1 CGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTACT
22349276 CAAGGAGATAAGGCTGGTGCTTC
66 CAAGGAGATAAGGCTGGTGCTTC
* * * *
22349299 CGATCTGCTTCACTGCTAGTACAGGAAGACAAGATCTACAATCTTCAGCCTACTCCACTGTTACT
1 CGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTACT
* *
22349364 CAGGGAGGTAAGGCT
66 CAAGGAGATAAGGCT
22349379 TAAATCTGCT
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (88 bp):
CGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCTACT
CAAGGAGATAAGGCTGGTGCTTC
Found at i:22351698 original size:5 final size:6
Alignment explanation
Indices: 22351684--22351717 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
22351674 TGACCTCTCC
* *
22351684 TTTTCT TTTTCT TTTTCT TTTTCC TGTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
22351718 TATTATTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:22351701 original size:12 final size:12
Alignment explanation
Indices: 22351681--22351717 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
22351671 GCTTGACCTC
22351681 TCCTTTTCTTTT
1 TCCTTTTCTTTT
*
22351693 TCTTTTTCTTTT
1 TCCTTTTCTTTT
*
22351705 TCCTGTTCTTTT
1 TCCTTTTCTTTT
22351717 T
1 T
22351718 TATTATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.76
Consensus pattern (12 bp):
TCCTTTTCTTTT
Found at i:22351705 original size:7 final size:7
Alignment explanation
Indices: 22351684--22351776 Score: 52
Period size: 7 Copynumber: 13.6 Consensus size: 7
22351674 TGACCTCTCC
22351684 TTTTC-T
1 TTTTCTT
22351690 TTTTC-T
1 TTTTCTT
22351696 TTTTC-T
1 TTTTCTT
*
22351702 TTTTC-C
1 TTTTCTT
*
22351708 TGTTCTT
1 TTTTCTT
*
22351715 TTTTATT
1 TTTTCTT
22351722 ATTTTCATT
1 -TTTTC-TT
22351731 TTTT-TT
1 TTTTCTT
**
22351737 ATTTTGAT
1 -TTTTCTT
**
22351745 TTTAATT
1 TTTTCTT
22351752 TTTTCTT
1 TTTTCTT
22351759 TTTTCTT
1 TTTTCTT
*
22351766 TTCTCTT
1 TTTTCTT
22351773 TTTT
1 TTTT
22351777 TTTAATTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
6 23 0.34
7 34 0.50
8 9 0.13
9 2 0.03
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (7 bp):
TTTTCTT
Found at i:22352906 original size:25 final size:25
Alignment explanation
Indices: 22352856--22352921 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
22352846 AAGAAAATCC
*
22352856 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
*
22352881 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
22352906 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
22352922 TGTATTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 3 0.08
25 23 0.64
26 5 0.14
27 5 0.14
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:22358178 original size:16 final size:15
Alignment explanation
Indices: 22358150--22358183 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22358140 AAACCATGAA
*
22358150 AAAAGAAAGGAAAAC
1 AAAAGAAAAGAAAAC
22358165 AAAAGAAAAAGAAAAC
1 AAAAG-AAAAGAAAAC
22358181 AAA
1 AAA
22358184 TAAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAAAC
Found at i:22360581 original size:26 final size:26
Alignment explanation
Indices: 22360541--22360593 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22360531 ACTGGGAAAC
*
22360541 CCCCAGTTCGCAACTTACCTGGCGAA
1 CCCCAGTTCGCAACTTAACTGGCGAA
* * *
22360567 CCCCAGTTTGTAACTTAACTGGTGAA
1 CCCCAGTTCGCAACTTAACTGGCGAA
22360593 C
1 C
22360594 ACTAGCTCGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (26 bp):
CCCCAGTTCGCAACTTAACTGGCGAA
Found at i:22363196 original size:40 final size:40
Alignment explanation
Indices: 22363142--22363259 Score: 123
Period size: 40 Copynumber: 3.0 Consensus size: 40
22363132 GTAAATTATA
* *
22363142 CCCTGATTGCACTTACGTGCCCTTGTTTGTACTTCAGTAC
1 CCCTAATTGCACTTACGTGCCCCTGTTTGTACTTCAGTAC
* * * * *
22363182 CCCTAATTGTACTTATGTGCCCCTGATTGTATTTCGGTAC
1 CCCTAATTGCACTTACGTGCCCCTGTTTGTACTTCAGTAC
* *
22363222 CCCTGAA-TGCACGT-CAGTGCCCCTGTTTGCACTTCAGT
1 CCCT-AATTGCACTTAC-GTGCCCCTGTTTGTACTTCAGT
22363260 TTCCCTGATC
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
40 60 0.97
41 2 0.03
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.36
Consensus pattern (40 bp):
CCCTAATTGCACTTACGTGCCCCTGTTTGTACTTCAGTAC
Found at i:22363226 original size:20 final size:20
Alignment explanation
Indices: 22363168--22363259 Score: 78
Period size: 20 Copynumber: 4.6 Consensus size: 20
22363158 GTGCCCTTGT
*
22363168 TTGTACTTCAGTACCCCTAA
1 TTGTACTTCAGTACCCCTGA
*
22363188 TTGTACTT-ATGTGCCCCTGA
1 TTGTACTTCA-GTACCCCTGA
* *
22363208 TTGTATTTCGGTACCCCTGA
1 TTGTACTTCAGTACCCCTGA
* * * * *
22363228 ATGCACGTCAGTGCCCCTGT
1 TTGTACTTCAGTACCCCTGA
*
22363248 TTGCACTTCAGT
1 TTGTACTTCAGT
22363260 TTCCCTGATC
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
19 1 0.02
20 55 0.98
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (20 bp):
TTGTACTTCAGTACCCCTGA
Found at i:22369310 original size:13 final size:13
Alignment explanation
Indices: 22369292--22369360 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
22369282 GTATCAACAC
22369292 TTCATATAACCAT
1 TTCATATAACCAT
***
22369305 TTCATATATTTAT
1 TTCATATAACCAT
* *
22369318 TTCCGTATAAACAT
1 TT-CATATAACCAT
* *
22369332 TTCGTATATCCAT
1 TTCATATAACCAT
*
22369345 TTCATATTACCAT
1 TTCATATAACCAT
22369358 TTC
1 TTC
22369361 CATTTACTCA
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
13 34 0.79
14 9 0.21
ACGTcount: A:0.30, C:0.20, G:0.03, T:0.46
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:22369314 original size:53 final size:53
Alignment explanation
Indices: 22369251--22369360 Score: 134
Period size: 53 Copynumber: 2.1 Consensus size: 53
22369241 AAATGTCCCT
*
22369251 TTTCACATATTTATATT-CATATAAATATTTCGTATCA-ACACTTCATATAACCA
1 TTTCACATATTTAT-TTCCATATAAACATTTCGTAT-ATACACTTCATATAACCA
* * * * *
22369304 TTTCATATATTTATTTCCGTATAAACATTTCGTATATCCATTTCATATTACCA
1 TTTCACATATTTATTTCCATATAAACATTTCGTATATACACTTCATATAACCA
22369357 TTTC
1 TTTC
22369361 CATTTACTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
52 3 0.06
53 46 0.94
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (53 bp):
TTTCACATATTTATTTCCATATAAACATTTCGTATATACACTTCATATAACCA
Found at i:22369345 original size:40 final size:39
Alignment explanation
Indices: 22369266--22369351 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
22369256 CATATTTATA
*
22369266 TTCATATAAATATTTCGTATCAACACTTCATATAACCAT
1 TTCATATAAATATTTCGTATAAACACTTCATATAACCAT
** * * *
22369305 TTCATATATTTATTTCCGTATAAACATTTCGTATATCCAT
1 TTCATATAAATATTT-CGTATAAACACTTCATATAACCAT
22369345 TTCATAT
1 TTCATAT
22369352 TACCATTTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 13 0.32
40 27 0.68
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.44
Consensus pattern (39 bp):
TTCATATAAATATTTCGTATAAACACTTCATATAACCAT
Found at i:22369346 original size:27 final size:27
Alignment explanation
Indices: 22369296--22369347 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
22369286 CAACACTTCA
* **
22369296 TATAACCATTTCATATATTTATTTCCG
1 TATAAACATTTCATATATCCATTTCCG
*
22369323 TATAAACATTTCGTATATCCATTTC
1 TATAAACATTTCATATATCCATTTC
22369348 ATATTACCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (27 bp):
TATAAACATTTCATATATCCATTTCCG
Found at i:22369360 original size:40 final size:40
Alignment explanation
Indices: 22369277--22369361 Score: 93
Period size: 40 Copynumber: 2.1 Consensus size: 40
22369267 TCATATAAAT
* **
22369277 ATTT-CGTATCAACACTTCATATAACCATTTCATATATTT
1 ATTTCCGTATAAACACTTCATATAACCATTTCATATATCC
* * *
22369316 ATTTCCGTATAAACATTTCGTATATCCATTTCATAT-TACC
1 ATTTCCGTATAAACACTTCATATAACCATTTCATATAT-CC
22369356 ATTTCC
1 ATTTCC
22369362 ATTTACTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 5 0.13
40 33 0.87
ACGTcount: A:0.31, C:0.22, G:0.04, T:0.44
Consensus pattern (40 bp):
ATTTCCGTATAAACACTTCATATAACCATTTCATATATCC
Found at i:22380754 original size:13 final size:12
Alignment explanation
Indices: 22380713--22380755 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
22380703 CATATTTATA
*
22380713 TTCATATAATAT
1 TTCATATAACAT
*
22380725 TTCATATAAACAC
1 TTCATAT-AACAT
22380738 TTCATATAACCAT
1 TTCATATAA-CAT
22380751 TTCAT
1 TTCAT
22380756 TTATTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 9 0.35
13 17 0.65
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (12 bp):
TTCATATAACAT
Found at i:22383975 original size:2 final size:2
Alignment explanation
Indices: 22383968--22384013 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
22383958 GTTTCAACTT
22383968 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
22384010 CA CA
1 CA CA
22384014 TAACCATTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:22394960 original size:32 final size:32
Alignment explanation
Indices: 22394893--22394954 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
22394883 CGTATAACTC
22394893 TTAA-ATGTTTAGAATTTTATAATGGATAAAT
1 TTAAGATGTTTAGAATTTTATAATGGATAAAT
22394924 TTAAGATGTTCTAGAATTTT-T-AT-GATAAAT
1 TTAAGATGTT-TAGAATTTTATAATGGATAAAT
22394954 T
1 T
22394955 ATTAAGCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 8 0.28
31 6 0.21
32 6 0.21
33 9 0.31
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.47
Consensus pattern (32 bp):
TTAAGATGTTTAGAATTTTATAATGGATAAAT
Found at i:22402623 original size:40 final size:40
Alignment explanation
Indices: 22402540--22402802 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
22402530 TTGAATGCTG
* * * * * *
22402540 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
22402580 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
22402620 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
22402660 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
22402700 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22402740 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22402779 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22402803 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:22402822 original size:79 final size:80
Alignment explanation
Indices: 22402579--22402837 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
22402569 AAGTGAATAT
* * * * * *
22402579 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
22402643 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
22402659 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
22402724 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
22402739 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
22402803 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
22402818 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
22402838 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:22410553 original size:40 final size:40
Alignment explanation
Indices: 22410470--22410732 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
22410460 TTGAATGCTG
* * * * * *
22410470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
22410510 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
22410550 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
22410590 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
22410630 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22410670 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22410709 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22410733 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:22410752 original size:79 final size:80
Alignment explanation
Indices: 22410509--22410767 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
22410499 AAGTGAATAT
* * * * * *
22410509 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
22410573 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
22410589 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
22410654 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
22410669 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
22410733 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
22410748 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
22410768 TACGTGACTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:22428810 original size:40 final size:40
Alignment explanation
Indices: 22428727--22428949 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
22428717 TTGAATGCTG
* * * * *
22428727 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
22428767 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
22428807 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
22428847 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
22428887 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
22428926 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22428950 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:22428864 original size:80 final size:79
Alignment explanation
Indices: 22428727--22428951 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
22428717 TTGAATGCTG
* * * * * *
22428727 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
22428790 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
22428807 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
22428872 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
22428887 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
22428951 G
65 G
22428952 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:22428969 original size:79 final size:80
Alignment explanation
Indices: 22428802--22428984 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
22428792 GTGCGAGATA
** *
22428802 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
22428867 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
22428882 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
22428946 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
22428961 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22428985 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:22428969 original size:119 final size:120
Alignment explanation
Indices: 22428727--22428984 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
22428717 TTGAATGCTG
* * * * *
22428727 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
22428792 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
22428847 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
22428909 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
22428966 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22428985 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:22436884 original size:39 final size:40
Alignment explanation
Indices: 22436630--22436892 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
22436620 TTGAATGCTG
* * * * * *
22436630 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
22436670 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
22436710 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
22436750 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
22436790 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
22436830 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
22436869 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22436893 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:22444351 original size:51 final size:50
Alignment explanation
Indices: 22444232--22444416 Score: 160
Period size: 51 Copynumber: 3.7 Consensus size: 50
22444222 AAAGTGATGG
* * * * * *
22444232 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGCCAGA-A-TGATTAG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-A-TAA
* * *
22444282 TCGCACGTGTAGTACTATGTACAGGCTACTATGCGTACCGGATAGCT-TCAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG-TAT-AA
* * * * **
22444333 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-ATAA
*
22444384 TCACATGTGTAGTACTATCTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
22444417 TGAACCGATA
Statistics
Matches: 108, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
50 36 0.33
51 70 0.65
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTATAA
Found at i:22444651 original size:8 final size:8
Alignment explanation
Indices: 22444638--22444662 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
22444628 ATAATGATTG
22444638 AAAGTGAA
1 AAAGTGAA
22444646 AAAGTGAA
1 AAAGTGAA
22444654 AAAGTGAA
1 AAAGTGAA
22444662 A
1 A
22444663 TTATGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.12
Consensus pattern (8 bp):
AAAGTGAA
Found at i:22444669 original size:16 final size:16
Alignment explanation
Indices: 22444650--22444681 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22444640 AGTGAAAAAG
*
22444650 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
22444666 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
22444682 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:22458079 original size:30 final size:30
Alignment explanation
Indices: 22458022--22458083 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
22458012 GCTTTTTGAA
* *
22458022 AATATTTACAAAAAAAGGCATCTAATTTTT
1 AATATTTACAAAAAAAGGCACCAAATTTTT
*
22458052 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAAAGGC-ACCAAATTTTT
22458082 AA
1 AA
22458084 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAAAGGCACCAAATTTTT
Found at i:22471697 original size:13 final size:13
Alignment explanation
Indices: 22471655--22471698 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
22471645 CATATTTATA
*
22471655 TTCATATAAATAT
1 TTCATATAAACAT
*
22471668 TTCATATAAACAC
1 TTCATATAAACAT
*
22471681 TTCATATAACCAT
1 TTCATATAAACAT
22471694 TTCAT
1 TTCAT
22471699 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (13 bp):
TTCATATAAACAT
Found at i:22488473 original size:22 final size:21
Alignment explanation
Indices: 22488448--22488515 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
22488438 TACACATTTC
22488448 ATCACATAACATTCAAGCATAT
1 ATCACA-AACATTCAAGCATAT
*
22488470 ATCACAATAC--TC-A-TATA-
1 ATCACAA-ACATTCAAGCATAT
*
22488487 ATCAAACAACATTCAAGCATAT
1 ATCACA-AACATTCAAGCATAT
22488509 ATCACAA
1 ATCACAA
22488516 TACTTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 15
0.65 0.07 0.28
Matches are distributed among these distances:
17 7 0.20
18 4 0.11
19 3 0.09
20 3 0.09
21 5 0.14
22 13 0.37
ACGTcount: A:0.49, C:0.24, G:0.03, T:0.25
Consensus pattern (21 bp):
ATCACAAACATTCAAGCATAT
Found at i:22488519 original size:39 final size:39
Alignment explanation
Indices: 22488426--22488519 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 39
22488416 CACTTTTAAA
* * * * * *
22488426 CATATATCACATTACACATTTCATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCAAACAACATTCAAG
22488465 CATATATCACAATACTCATATAATCAAACAACATTCAAG
1 CATATATCACAATACTCATATAATCAAACAACATTCAAG
22488504 CATATATCACAATACT
1 CATATATCACAATACT
22488520 TAAAAACATG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.45, C:0.24, G:0.02, T:0.29
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCAAACAACATTCAAG
Found at i:22501301 original size:19 final size:19
Alignment explanation
Indices: 22501277--22501315 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22501267 TAAAATTAAT
22501277 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
22501296 TTTTCTAGAATATTATTTA
1 TTTTCTAAAATATTATTTA
22501315 T
1 T
22501316 CAATCTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:22504642 original size:3 final size:3
Alignment explanation
Indices: 22504634--22504674 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
22504624 GTTACTTTAA
*
22504634 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAA TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
22504675 AGCTTTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:22514521 original size:126 final size:126
Alignment explanation
Indices: 22514244--22515012 Score: 1036
Period size: 126 Copynumber: 6.1 Consensus size: 126
22514234 TAAGGCCAAG
*
22514244 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* *
22514309 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCATATTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * ** *
22514370 CAGCAACTACTGTAGAAAAAGAGCGTTCATATGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * ** **
22514435 ATCCTGCTTGAAGCTTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTT
66 ATCCTGCTTGAAGC--TTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
22514498 -AGGAACTAATGTAGAAAAA-AGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
*
22514561 ATCCTGCTTGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTTTT
66 ATCCTGCTTGAAGC-TTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
22514620 -AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
22514683 ATTCTGCTTGAAGCATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
22514743 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
22514808 ATCCTGCTTGAAGCGTTTTTGACATTATTTTTTCAAAACCGTCTTTTCAAAATT-TATTTTT
66 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTAT-TTTTT
* * * * ** * *
22514869 CAGAAACTCCTGTAGAAAAATAGCGTCCATGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
** * * *
22514934 ATATTGCTTGAAGCGTTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAATTTTTT
66 ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTT
* *
22514996 -AGAAACTACTATAGAAA
1 CAGGAACTACTGTAGAAA
22515013 TAAAAACAAA
Statistics
Matches: 573, Mismatches: 58, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
121 23 0.04
122 72 0.13
123 26 0.05
124 62 0.11
125 53 0.09
126 275 0.48
127 22 0.04
128 40 0.07
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:22514974 original size:373 final size:376
Alignment explanation
Indices: 22514245--22515012 Score: 1107
Period size: 373 Copynumber: 2.0 Consensus size: 376
22514235 AAGGCCAAGC
*
22514245 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* *
22514310 TCCTGCTTGAAGCTTTTTTGACACTATTTTTTCAGAACCATATTCTCAAAATTATTTTTTCAGCA
66 TCCTGCTTGAAGCATTTTTGACACTATTTTTTCAAAACCATATTCTCAAAATTATTTTTTCAGCA
* * * *
22514375 ACTACTGTAGAAAAAGAGCGTTCATATGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATCCT
131 ACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
* * * * *
22514440 GCTTGAAGCTTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTTAGGAACT
196 GCTTGAAGC-TGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAAAAAAATTTTAGAAACT
** * *
22514505 AATGTAGAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTT
260 AATGTAGAAAAAAGCGTCCACGTGACAGCTTTTTTCAGTAATTTTGCTAACAGTGCATACTGCTT
22514570 GAAGCGCTTTTTACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTTTT
325 GAAGCGCTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
22514620 AGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAGTAATTTTGTTGACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
* * *
22514684 TTCTGCTTGAAGCATTTTTGACACTA-TTTTTCAAAACCATCTTCTCAAAATTATTTTTTCAGGA
66 TCCTGCTTGAAGCATTTTTGACACTATTTTTTCAAAACCATATTCTCAAAATTATTTTTTCAGCA
* *
22514748 ACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGCATCCT
131 ACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
* * *** *
22514813 GCTTGAAGC-GTTTTTGACATTATTTTTTCAAAACCGTCTTTTCAAAATTTATTTTTCAGAAACT
196 GCTTGAAGCTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAAAAAAATTTT-AGAAACT
** * * *
22514877 CCTGTAGAAAAATAGCGTCCATGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGCATATTGCT
260 AATGTAGAAAAA-AGCGTCCACGTGACAGCTTTTTTCAGTAATTTTGCTAACAGTGCATACTGCT
* *
22514942 TGAAGCG-TTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAATTTTTT
324 TGAAGCGCTTTTT-ACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTT
* *
22514996 AGAAACTACTATAGAAA
1 AGGAACTACTGTAGAAA
22515013 TAAAAACAAA
Statistics
Matches: 348, Mismatches: 39, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
371 37 0.11
372 21 0.06
373 180 0.52
374 54 0.16
375 36 0.10
376 20 0.06
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (376 bp):
AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCA
TCCTGCTTGAAGCATTTTTGACACTATTTTTTCAAAACCATATTCTCAAAATTATTTTTTCAGCA
ACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCATCCT
GCTTGAAGCTGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAAAAAAATTTTAGAAACTA
ATGTAGAAAAAAGCGTCCACGTGACAGCTTTTTTCAGTAATTTTGCTAACAGTGCATACTGCTTG
AAGCGCTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:22515111 original size:33 final size:31
Alignment explanation
Indices: 22515074--22515195 Score: 129
Period size: 33 Copynumber: 3.7 Consensus size: 31
22515064 ACCCTTTTAC
*
22515074 AAAAACCCTAAAACCTAAACACAATTATTTTTT
1 AAAAACCCT-AAACCTAAATA-AATTATTTTTT
* *
22515107 AAAAACCCTAAACCTTAATTTAATTAATTTTCTT
1 AAAAACCCTAAACC-TAAATAAATT-ATTTT-TT
*
22515141 AAAAACCCTAAACCTAATTTAAA-TATTTTTT
1 AAAAACCCTAAACCTAA-ATAAATTATTTTTT
*
22515172 AAAATCCCTAAACCCTAAATAAAT
1 AAAAACCCTAAA-CCTAAATAAAT
22515196 AAATTCCTAA
Statistics
Matches: 77, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
31 17 0.22
32 19 0.25
33 21 0.27
34 20 0.26
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAAACCCTAAACCTAAATAAATTATTTTTT
Found at i:22515148 original size:34 final size:31
Alignment explanation
Indices: 22515096--22515185 Score: 135
Period size: 34 Copynumber: 2.8 Consensus size: 31
22515086 ACCTAAACAC
22515096 AATTATTTTTTAAAAACCCTAAACCTTAATTT
1 AATTATTTTTTAAAAACCCTAAACC-TAATTT
22515128 AATTAATTTTCTTAAAAACCCTAAACCTAATTT
1 AATT-ATTTT-TTAAAAACCCTAAACCTAATTT
* *
22515161 AAATATTTTTTAAAATCCCTAAACC
1 AATTATTTTTTAAAAACCCTAAACC
22515186 CTAAATAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
31 15 0.28
32 9 0.17
33 14 0.26
34 16 0.30
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (31 bp):
AATTATTTTTTAAAAACCCTAAACCTAATTT
Found at i:22515263 original size:8 final size:7
Alignment explanation
Indices: 22515218--22515265 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 7
22515208 TATTTTAACA
22515218 AAACCCT
1 AAACCCT
22515225 -AACCCT
1 AAACCCT
22515231 -AACCCT
1 AAACCCT
22515237 AAACCACT
1 AAACC-CT
22515245 AAAACCCT
1 -AAACCCT
22515253 AAACCCAT
1 AAACCC-T
22515261 AAACC
1 AAACC
22515266 ATAGGCATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 12 0.32
7 10 0.27
8 10 0.27
9 5 0.14
ACGTcount: A:0.46, C:0.42, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:22518513 original size:15 final size:16
Alignment explanation
Indices: 22518495--22518528 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22518485 AGATTAAATT
22518495 AATTAA-CTAAATACA
1 AATTAACCTAAATACA
*
22518510 AATTAACCTAAATGCA
1 AATTAACCTAAATACA
22518526 AAT
1 AAT
22518529 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATACA
Found at i:22521666 original size:14 final size:15
Alignment explanation
Indices: 22521638--22521671 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
22521628 GCGCCTTCGT
22521638 AAAA-CGCCGCTAAA
1 AAAACCGCCGCTAAA
22521652 AAAACCGCCGC-AAA
1 AAAACCGCCGCTAAA
22521666 AAAACC
1 AAAACC
22521672 TAAGCCCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.53, C:0.32, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAACCGCCGCTAAA
Found at i:22521769 original size:42 final size:41
Alignment explanation
Indices: 22521706--22521916 Score: 199
Period size: 41 Copynumber: 5.1 Consensus size: 41
22521696 CCTTTCTGGG
* * *
22521706 CTTTAGCAGCGTTTTTTAAAAAAGCACCGCTAATGCTCAGAT
1 CTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * *
22521748 CTTTAGCGGTGTTTTTGAAAAAGTGCCACTAATGCTTAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * *
22521789 CTTTAG-GAGCGTTTTTGAAAAGGCGCAGCTAATGCTCAAAT
1 CTTTAGCG-GCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * **
22521830 CTTTAGCTGCGTTTTTGGAAAAGCGCCGCTAATGCTCGGGG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * * ** * *
22521871 CTTTAGTGGCGTTTTTTAAGAAGCGCATCTAATGCTCGGAG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
22521912 CTTTA
1 CTTTA
22521917 ACATTTTATC
Statistics
Matches: 137, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.01
41 127 0.93
42 9 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:22521942 original size:20 final size:19
Alignment explanation
Indices: 22521919--22521960 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
22521909 GAGCTTTAAC
*
22521919 ATTTTATCTGTTTATTTACT
1 ATTTAATCTGTTTATTTA-T
*
22521939 ATTTAATTTGTTTATTTAT
1 ATTTAATCTGTTTATTTAT
22521958 ATT
1 ATT
22521961 AATTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (19 bp):
ATTTAATCTGTTTATTTAT
Found at i:22522057 original size:26 final size:26
Alignment explanation
Indices: 22522009--22522059 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
22521999 AAAATGGATA
** * *
22522009 AATTTGAAATAATGACACGTAGAAAT
1 AATTTGAAATAAAAAAACATAGAAAT
22522035 AATTTGAAATAAAAAAACATAGAAA
1 AATTTGAAATAAAAAAACATAGAAA
22522060 AATATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (26 bp):
AATTTGAAATAAAAAAACATAGAAAT
Found at i:22522373 original size:14 final size:14
Alignment explanation
Indices: 22522356--22522395 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
22522346 GGGTTGTGAT
22522356 TTAGGGGTTAAGGG
1 TTAGGGGTTAAGGG
*
22522370 TTAGGGGTTAGGGG
1 TTAGGGGTTAAGGG
22522384 TTA-GGGTTAAGG
1 TTAGGGGTTAAGG
22522396 ATTTAAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (14 bp):
TTAGGGGTTAAGGG
Found at i:22523711 original size:24 final size:25
Alignment explanation
Indices: 22523670--22523723 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 25
22523660 TTATAAAATC
22523670 TCCCCTCCCCCCCCGCCCCCCGAAA
1 TCCCCTCCCCCCCCGCCCCCCGAAA
*
22523695 TCCCC-CCTCCCCCGCCCCCCGAAA
1 TCCCCTCCCCCCCCGCCCCCCGAAA
22523719 TCCCC
1 TCCCC
22523724 AACCTTCCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.11, C:0.72, G:0.07, T:0.09
Consensus pattern (25 bp):
TCCCCTCCCCCCCCGCCCCCCGAAA
Found at i:22523882 original size:36 final size:36
Alignment explanation
Indices: 22523836--22523904 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
22523826 AGTGGATCTA
22523836 TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
1 TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
*
22523872 TTATGGATGTTTTAGATCTTTATGTTATGATTT
1 TTATAGATGTTTTAGATCTTTATGTTATGATTT
22523905 TAGTTCCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.17, T:0.57
Consensus pattern (36 bp):
TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
Found at i:22523895 original size:19 final size:19
Alignment explanation
Indices: 22523830--22523895 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
22523820 GGTTTTAGTG
*
22523830 GATCTATTATAGATGTTTTA
1 GATCT-TTATGGATGTTTTA
* *
22523850 GATCTTTATGTTATGATTT-
1 GATCTTTATG-GATGTTTTA
22523869 GA--TTTATGGATGTTTTA
1 GATCTTTATGGATGTTTTA
22523886 GATCTTTATG
1 GATCTTTATG
22523896 TTATGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
16 6 0.16
17 8 0.22
19 12 0.32
20 11 0.30
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.53
Consensus pattern (19 bp):
GATCTTTATGGATGTTTTA
Found at i:22523907 original size:21 final size:21
Alignment explanation
Indices: 22523845--22523907 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 21
22523835 ATTATAGATG
22523845 TTTTAGATCTTTATGTTATGA
1 TTTTAGATCTTTATGTTATGA
*
22523866 -TTT-GA--TTTATG-GATG-
1 TTTTAGATCTTTATGTTATGA
22523881 TTTTAGATCTTTATGTTATGA
1 TTTTAGATCTTTATGTTATGA
22523902 TTTTAG
1 TTTTAG
22523908 TTCCTCAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
19 8 0.24
20 6 0.18
21 6 0.18
ACGTcount: A:0.22, C:0.03, G:0.17, T:0.57
Consensus pattern (21 bp):
TTTTAGATCTTTATGTTATGA
Found at i:22524460 original size:2 final size:2
Alignment explanation
Indices: 22524453--22524482 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22524443 AACAAGTATC
22524453 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22524483 GAATGCCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22528247 original size:43 final size:43
Alignment explanation
Indices: 22528134--22528298 Score: 190
Period size: 43 Copynumber: 3.9 Consensus size: 43
22528124 GTTATGTTTT
* ** * * *
22528134 TAGCGGCGTTTTTTCGAAAAGCGCCGCTAAAGGT-TTGTTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* *
22528176 TAGCGGCGTTTGTCGG-AAAGCACCGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
** *
22528218 TAGCGGCAATTGTGGGAAAAGCGCCGCTAAAGGTCCTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
22528261 TAGCGGCGTTTTTGGGAAAAACGCTGCTAAAGGTCATG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
22528299 ACGTTGTCAA
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
41 16 0.16
42 31 0.30
43 56 0.54
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTA
Found at i:22531516 original size:15 final size:16
Alignment explanation
Indices: 22531498--22531531 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22531488 AGATTCAATT
22531498 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
22531513 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
22531529 AAT
1 AAT
22531532 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:22536487 original size:25 final size:25
Alignment explanation
Indices: 22536440--22536488 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
22536430 GAACGAATTT
*
22536440 TCATAAAATTTTACCGAGGGTAAAA
1 TCATAAAATTTTACCGAGAGTAAAA
*
22536465 TCATCAAAATTTTA-CTAGAGTAAA
1 TCAT-AAAATTTTACCGAGAGTAAA
22536489 TTTGGGATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (25 bp):
TCATAAAATTTTACCGAGAGTAAAA
Found at i:22537146 original size:28 final size:28
Alignment explanation
Indices: 22537069--22537156 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
22537059 TAAACGTAGG
* *
22537069 TACTGTCTCGGTGAACTTACTTCATGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
* *
22537097 TACTGTCACTGTAAACTTACTTCGTGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
* * * *
22537125 TACTGTCTCGGCAAAATCACTTTGTGTT
1 TACTGTCTCGGTAAACTTACTTCGTGTT
22537153 TACT
1 TACT
22537157 ATCTTGACAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (28 bp):
TACTGTCTCGGTAAACTTACTTCGTGTT
Found at i:22539972 original size:30 final size:30
Alignment explanation
Indices: 22539936--22539996 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22539926 AATGCTTAGT
22539936 AAGTTCGTATAAGAGAAACTTAAACTTCTC
1 AAGTTCGTATAAGAGAAACTTAAACTTCTC
22539966 AAGTTCGTATAAGAGAAACTTAAACTTCTC
1 AAGTTCGTATAAGAGAAACTTAAACTTCTC
22539996 A
1 A
22539997 TTCCTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (30 bp):
AAGTTCGTATAAGAGAAACTTAAACTTCTC
Found at i:22548276 original size:42 final size:43
Alignment explanation
Indices: 22548187--22548285 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
22548177 AAGACAGGGG
* * * **
22548187 ACACATGGCCGTGTCCCAGCCCGTGTAACTCACTGAGTTGGGT
1 ACACACGGCCGTGTCCCAGCCCGTGTAACACACTGACTTGAAT
22548230 -CACACGGCCGTGTCCCAAG-CCGTGTAACACACTGACTT-AAT
1 ACACACGGCCGTGTCCC-AGCCCGTGTAACACACTGACTTGAAT
*
22548271 ACACACGACCGTGTC
1 ACACACGGCCGTGTC
22548286 TTAGACCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
41 1 0.02
42 45 0.94
43 2 0.04
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (43 bp):
ACACACGGCCGTGTCCCAGCCCGTGTAACACACTGACTTGAAT
Found at i:22550294 original size:11 final size:11
Alignment explanation
Indices: 22550279--22550308 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
22550269 TTTATTCTTC
22550279 ATTTAATTTTG
1 ATTTAATTTTG
*
22550290 TTTTAATTTTG
1 ATTTAATTTTG
22550301 ATTTAATT
1 ATTTAATT
22550309 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:22554771 original size:88 final size:88
Alignment explanation
Indices: 22554622--22554797 Score: 352
Period size: 88 Copynumber: 2.0 Consensus size: 88
22554612 GCGCTTTGAC
22554622 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
1 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
22554687 TCAAAGACAAAATTAAAAGGAAG
66 TCAAAGACAAAATTAAAAGGAAG
22554710 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
1 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
22554775 TCAAAGACAAAATTAAAAGGAAG
66 TCAAAGACAAAATTAAAAGGAAG
22554798 ATAAGCAGCG
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (88 bp):
GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
TCAAAGACAAAATTAAAAGGAAG
Found at i:22556586 original size:25 final size:26
Alignment explanation
Indices: 22556535--22556587 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
22556525 ATTTAAATTA
22556535 AAAAAAATAGATATGATAACTTATTT
1 AAAAAAATAGATATGATAACTTATTT
*
22556561 AAAAAAATAGATATGATAA-TTTTTT
1 AAAAAAATAGATATGATAACTTATTT
22556586 AA
1 AA
22556588 TGTTGTCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.36
Consensus pattern (26 bp):
AAAAAAATAGATATGATAACTTATTT
Found at i:22557271 original size:17 final size:18
Alignment explanation
Indices: 22557251--22557292 Score: 70
Period size: 16 Copynumber: 2.4 Consensus size: 18
22557241 AGAATTTTTG
22557251 AAAAATAATTATTT-TAT
1 AAAAATAATTATTTATAT
22557268 -AAAATAATTATTTATAT
1 AAAAATAATTATTTATAT
22557285 AAAAATAA
1 AAAAATAA
22557293 ATGGATCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.57
17 3 0.13
18 7 0.30
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAAATAATTATTTATAT
Found at i:22557623 original size:14 final size:15
Alignment explanation
Indices: 22557606--22557634 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22557596 AAATTGAATG
22557606 TTGAAAAA-TAAGTA
1 TTGAAAAATTAAGTA
22557620 TTGAAAAATTAAGTA
1 TTGAAAAATTAAGTA
22557635 CTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (15 bp):
TTGAAAAATTAAGTA
Found at i:22558251 original size:86 final size:86
Alignment explanation
Indices: 22558106--22558276 Score: 333
Period size: 86 Copynumber: 2.0 Consensus size: 86
22558096 TAGAATGTTC
*
22558106 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGTAAATTTTGTGTTCGAAA
1 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
22558171 AAGAAATAGTATATTGCATTA
66 AAGAAATAGTATATTGCATTA
22558192 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
1 ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
22558257 AAGAAATAGTATATTGCATT
66 AAGAAATAGTATATTGCATT
22558277 TCAATGACAC
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.45
Consensus pattern (86 bp):
ACATTTTTATTTAGAAATTGTTGTTACTAGTGTGATTATTGTAATTGCAAATTTTGTGTTCGAAA
AAGAAATAGTATATTGCATTA
Found at i:22559869 original size:12 final size:12
Alignment explanation
Indices: 22559852--22559876 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22559842 TGCACCAAGT
22559852 AGGGTCTCAGGA
1 AGGGTCTCAGGA
22559864 AGGGTCTCAGGA
1 AGGGTCTCAGGA
22559876 A
1 A
22559877 AGGGAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.40, T:0.16
Consensus pattern (12 bp):
AGGGTCTCAGGA
Found at i:22569882 original size:30 final size:30
Alignment explanation
Indices: 22569848--22569906 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
22569838 TCCGAGCTTT
22569848 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
22569878 GGGGAAAAATTGTAATTTTGCCAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
22569907 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:22570267 original size:26 final size:26
Alignment explanation
Indices: 22570231--22570280 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22570221 TTGGATAAAA
22570231 AGGGGTCGCTAAGTGCAGATTCCCTG
1 AGGGGTCGCTAAGTGCAGATTCCCTG
* *
22570257 AGGGGTTGCTAAGTGCTGATTCCC
1 AGGGGTCGCTAAGTGCAGATTCCC
22570281 CAAATTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.34, T:0.26
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGCAGATTCCCTG
Found at i:22570307 original size:42 final size:42
Alignment explanation
Indices: 22570260--22570486 Score: 223
Period size: 43 Copynumber: 5.4 Consensus size: 42
22570250 TTCCCTGAGG
** *
22570260 GGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
22570302 GGTTGCTAAGTGCTGATTCCATCGTA-TATTTGATTGTGAAAAG-
1 GGTTGCTAAGTGCTGATTCC-CCGTATTA-TTGATTGT-AAAGGT
* * * * *
22570345 GGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
* *
22570387 AGTTGCTAAGTGCTGATTCCACCGCATCT-TTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCGTAT-TATTGATTGT-AAAGGT
* *
22570430 GGTTGCTATGTGCTGATTCCCCGTATCATTGAATT-T-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATTATTG-ATTGTAAAGGT
22570471 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
22570487 ATCCACCGAG
Statistics
Matches: 150, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
40 4 0.03
41 19 0.13
42 58 0.39
43 60 0.40
44 9 0.06
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATTATTGATTGTAAAGGT
Found at i:22570402 original size:85 final size:84
Alignment explanation
Indices: 22570259--22570494 Score: 337
Period size: 85 Copynumber: 2.8 Consensus size: 84
22570249 ATTCCCTGAG
* ** * * *
22570259 GGGTTGCTAAGTGCTGATTCCCCAAATTATTGATTCTAAAGGTGGTTGCTAAGTGCTGATTCCAT
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCCAC
*
22570324 CGTATATTTGATTGTGAAAA
65 CGCATATTTGATTGTGAAAA
* *
22570344 GGGTTGCTATGTGCTGATTCCCCGTATCACTGAATATAAAGGTAGTTGCTAAGTGCTGATTCCAC
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCCAC
* *
22570409 CGCATCTTTGATTGTGAAAG
65 CGCATATTTGATTGTGAAAA
* *
22570429 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTTAAGGTGGTTGCTAAGTGCTGAATCCACC
1 GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACC
22570494 G
66 G
22570495 AGTAACGGAT
Statistics
Matches: 135, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
84 28 0.21
85 107 0.79
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.34
Consensus pattern (84 bp):
GGGTTGCTATGTGCTGATTCCCCGTATCATTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACC
GCATATTTGATTGTGAAAA
Found at i:22573706 original size:68 final size:68
Alignment explanation
Indices: 22573593--22573782 Score: 272
Period size: 68 Copynumber: 2.8 Consensus size: 68
22573583 AATCATAGGT
* *
22573593 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCTGCCAGGATAG
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
22573658 GAA
66 GAA
* * * ** * *
22573661 ACATGAAACCATATTGTGTAATACCATAGTTGATCTATGGTAACAAATGAAGTCTGCTAGGAAAG
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
*
22573726 TAA
66 GAA
* *
22573729 ACATGGCACCATATTGTGTAAGACCATAGCTGGGCTATTGCAACAAATGAAGTC
1 ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTC
22573783 CACTAAAATG
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 104 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
ACATGACACCATATTGTGTAAGACCATAGCTGGGCTATGGCAACAAATGAAGTCTGCCAGGAAAG
GAA
Found at i:22577326 original size:50 final size:50
Alignment explanation
Indices: 22577174--22577364 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 50
22577164 GGTGATGAGA
22577174 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-----GA-TATGAGAGG
* * * * * * *
22577230 TTCCATGGAAAAACATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
** ** **
22577280 TCCCCCGTAAGACCATGTCTGGGACATGGCAAGGGCATCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
* * *
22577330 TCTCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
22577365 TAGTACAGGA
Statistics
Matches: 108, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
50 73 0.68
51 2 0.02
56 33 0.31
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGAGG
Found at i:22584527 original size:28 final size:28
Alignment explanation
Indices: 22584476--22584531 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
22584466 TTTGGATCCA
* *
22584476 TACTTGTAAGATAGTCTTAACGGACTCC
1 TACTTATAAGATAGTCCTAACGGACTCC
**
22584504 TACTTATAAGATAGTCCTGGCGGACTCC
1 TACTTATAAGATAGTCCTAACGGACTCC
22584532 CATATGGAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
TACTTATAAGATAGTCCTAACGGACTCC
Found at i:22598308 original size:49 final size:49
Alignment explanation
Indices: 22598248--22599087 Score: 1353
Period size: 49 Copynumber: 17.6 Consensus size: 49
22598238 GATAATTGTG
22598248 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598295 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598344 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598393 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
22598440 ATGTGAAACTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598487 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22598536 ATGTTAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22598585 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22598632 ATGTGAAAGTG--TATGTATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22598679 ATGTGAAAGTGTATATATTTGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598728 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22598777 ATGTG-AAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598823 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598872 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22598921 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22598968 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22599015 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22599062 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
22599088 TCCCGAAGGG
Statistics
Matches: 751, Mismatches: 31, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
46 39 0.05
47 331 0.44
48 8 0.01
49 373 0.50
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22598547 original size:192 final size:192
Alignment explanation
Indices: 22598248--22599087 Score: 1429
Period size: 192 Copynumber: 4.4 Consensus size: 192
22598238 GATAATTGTG
* *
22598248 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22598313 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
22598378 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
22598440 ATGTGAAACTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
22598505 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTTAAAGTGTATATATATGTGATGAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
22598570 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22598632 ATGTGAAAGTGTATGTATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22598697 TTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
* *
22598762 TGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22598823 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22598888 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
* *
22598951 AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
129 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22599015 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22599078 ATGTGATAAG
66 ATGTGATAAG
22599088 TCCCGAAGGG
Statistics
Matches: 612, Mismatches: 33, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 44 0.07
191 89 0.15
192 375 0.61
193 93 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (192 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22598629 original size:22 final size:22
Alignment explanation
Indices: 22598601--22598678 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
22598591 AAGTGTATAT
22598601 ATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAGGCCTAATGGCCG
* *** ***
22598623 ATGTGATGAATGTGAAAGTGTATG
1 ATGTGATG-AGGCCTAA-TGGCCG
22598647 TATGTGATGAGGCCTAATGGCCG
1 -ATGTGATGAGGCCTAATGGCCG
22598670 ATGTGATGA
1 ATGTGATGA
22598679 ATGTGAAAGT
Statistics
Matches: 39, Mismatches: 14, Indels: 6
0.66 0.24 0.10
Matches are distributed among these distances:
22 17 0.44
23 7 0.18
24 7 0.18
25 8 0.21
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.28
Consensus pattern (22 bp):
ATGTGATGAGGCCTAATGGCCG
Found at i:22601357 original size:40 final size:40
Alignment explanation
Indices: 22601320--22601545 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
22601310 GCTACTCGTT
* *
22601320 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
22601360 CAAATGCCTTCGGGACTTAACCCGGACTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
22601400 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
22601440 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
22601480 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
22601521 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22601546 CATCATTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 153 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22604708 original size:40 final size:40
Alignment explanation
Indices: 22604647--22604927 Score: 395
Period size: 40 Copynumber: 7.0 Consensus size: 40
22604637 AGGTCTCGAC
22604647 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
22604686 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
22604726 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
22604766 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
22604806 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
22604846 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
22604886 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
22604926 GA
1 GA
22604928 CGTGTATTCG
Statistics
Matches: 217, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 5 0.02
40 210 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:22608302 original size:47 final size:47
Alignment explanation
Indices: 22608250--22609326 Score: 1785
Period size: 47 Copynumber: 22.6 Consensus size: 47
22608240 GATAATTGTG
* *
22608250 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608346 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608393 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608440 ATCTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608487 ATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608536 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608583 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608630 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608679 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22608728 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608775 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608871 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608918 ATGTGAAAGGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22608966 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609015 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22609062 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22609109 ATGTGAAAGTGTATATATATGTGATAATGCCTAATGGCCGATGTGATTA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22609158 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609207 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22609254 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609301 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22609327 TCCCGAAGGG
Statistics
Matches: 981, Mismatches: 36, Indels: 26
0.94 0.03 0.02
Matches are distributed among these distances:
47 566 0.58
48 45 0.05
49 370 0.38
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22608352 original size:96 final size:96
Alignment explanation
Indices: 22608250--22609326 Score: 1823
Period size: 96 Copynumber: 11.3 Consensus size: 96
22608240 GATAATTGTG
* *
22608250 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22608315 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
22608346 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22608409 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608440 ATCTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22608505 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608536 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22608599 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
22608630 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22608695 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22608728 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22608793 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
22608824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22608887 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22608918 ATGTGAAAGGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
22608983 TATGTGATAAGGCCTAATGGCCGATGTGATGA
65 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609015 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
22609078 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22609109 ATGTGAAAGTGTATATATATGTGATAATGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
22609174 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609207 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
22609270 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22609301 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22609327 TCCCGAAGGG
Statistics
Matches: 932, Mismatches: 36, Indels: 28
0.94 0.04 0.03
Matches are distributed among these distances:
94 281 0.30
95 49 0.05
96 468 0.50
97 43 0.05
98 91 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22608398 original size:143 final size:141
Alignment explanation
Indices: 22608250--22609326 Score: 1758
Period size: 143 Copynumber: 7.5 Consensus size: 141
22608240 GATAATTGTG
*
22608250 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
22608315 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
22608380 GCCGATGTGATGA
129 GCCGATGTGATGA
* *
22608393 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22608458 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
22608523 GCCGATGTGATGA
129 GCCGATGTGATGA
* *
22608536 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
22608601 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
22608666 GCCGATGTGATGA
129 GCCGATGTGATGA
22608679 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
22608744 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
22608809 TGGCCGATGTGATGA
127 TGGCCGATGTGATGA
*
22608824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
22608889 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTATATATATGTGATAAGGCCTAATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGG
22608954 CCGATGTGATGA
130 CCGATGTGATGA
22608966 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
22609031 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
22609096 GCCAATGTGATGA
129 GCCGATGTGATGA
* *
22609109 ATGTGAAAGTGTATATATATGTGATAATGCCTAATGGCCGATGTGATTAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
22609174 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
22609239 TGGCCGATGTGATGA
127 TGGCCGATGTGATGA
* * * * * * * * *
22609254 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22609319 GTGATAAG
66 GTGATAAG
22609327 TCCCGAAGGG
Statistics
Matches: 884, Mismatches: 41, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
141 61 0.07
142 44 0.05
143 461 0.52
144 93 0.11
145 225 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGA
Found at i:22614640 original size:28 final size:28
Alignment explanation
Indices: 22614607--22614846 Score: 178
Period size: 28 Copynumber: 8.6 Consensus size: 28
22614597 TCGAATGTTT
* * * *
22614607 CCATAATGGCTTCCTTCATTAGAGCTTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* ** *
22614635 CCATAACGGCAACCTTCATCAGTGATCG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
22614663 CCACAAAGGCATCCTTCATCAGGGATCG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
22614691 CCACAAAGGCTCCCTTCATCAGAGATCA
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* ** * *
22614719 CCATAATGGCTTCCTTCATTGGGGATTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * * *
22614747 CCACAAAGGCTTTCTTCAACAGAGATTG
1 CCATAAAGGCTTCCTTCATCAGAGATCG
* * *
22614775 CCATAATGGCTTCCATT-ATCA-AGGGTCA
1 CCATAAAGGCTTCC-TTCATCAGA-GATCG
* * *
22614803 CCACAAAGGCTTCCTTCATCAAAGATCA
1 CCATAAAGGCTTCCTTCATCAGAGATCG
*
22614831 CCAAAAAGGCTTCCTT
1 CCATAAAGGCTTCCTT
22614847 TTCTTGGTGT
Statistics
Matches: 167, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
27 3 0.02
28 161 0.96
29 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
CCATAAAGGCTTCCTTCATCAGAGATCG
Found at i:22614711 original size:56 final size:56
Alignment explanation
Indices: 22614647--22614846 Score: 215
Period size: 56 Copynumber: 3.6 Consensus size: 56
22614637 ATAACGGCAA
* * * * *
22614647 CCTTCATCAGTGATCGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGCTC
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
* ** *
22614703 CCTTCATCAGAGATCACCATAATGGCTTCCTTCATTGGGGATTGCCACAAAGGCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
* * ** * *
22614759 TCTTCAACAGAGATTGCCATAATGGCTTCCATT-ATCAAGGG-TCACCACAAAGGCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCC-TTCATC-AGGGATCGCCACAAAGGCTT
* *
22614815 CCTTCATCAAAGATCACCAAAAAGGCTTCCTT
1 CCTTCATCAGAGATCACCATAAAGGCTTCCTT
22614847 TTCTTGGTGT
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
55 2 0.02
56 111 0.94
57 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (56 bp):
CCTTCATCAGAGATCACCATAAAGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
Found at i:22614736 original size:84 final size:84
Alignment explanation
Indices: 22614647--22614846 Score: 197
Period size: 84 Copynumber: 2.4 Consensus size: 84
22614637 ATAACGGCAA
* * * * *
22614647 CCTTCATCAGTGATCGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGC-TCCCTTCATC
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATT-ATC
* *
22614711 -AGAGATCACCATAATGGCTT
65 AAG-GATCACCACAAAGGCTT
** * * * * * *
22614731 CCTTCATTGGGGATTGCCACAAAGGCTTTCTTCAACAGAGATTGCCATAATGGCTTCCATTATCA
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
*
22614796 AGGGTCACCACAAAGGCTT
66 AGGATCACCACAAAGGCTT
* * *
22614815 CCTTCATCAAAGATCACCAAAAAGGCTTCCTT
1 CCTTCATCAGAGATCGCCACAAAGGCTTCCTT
22614847 TTCTTGGTGT
Statistics
Matches: 91, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
84 84 0.92
85 7 0.08
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (84 bp):
CCTTCATCAGAGATCGCCACAAAGGCTTCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
AGGATCACCACAAAGGCTT
Found at i:22619348 original size:20 final size:20
Alignment explanation
Indices: 22619323--22619361 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22619313 TTGCTTTTTC
22619323 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
22619343 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
22619362 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:22619687 original size:50 final size:50
Alignment explanation
Indices: 22619570--22619742 Score: 156
Period size: 50 Copynumber: 3.5 Consensus size: 50
22619560 ACATGTCAAA
* * * * *
22619570 GCCAAGTCCCAGAAATGGTCTTACATGGGATGTT-TCCTGTAC--TACCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCCAAT
* * * *
22619619 GCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
** ** * *
22619669 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
22619719 GCCATG-CCCTAGACATGGTCTTAC
1 GCCATGTCCC-AGACATGGTCTTAC
22619743 GTGGTACCTA
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
48 4 0.04
49 33 0.32
50 65 0.64
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAAT
Found at i:22619743 original size:50 final size:50
Alignment explanation
Indices: 22619633--22619811 Score: 157
Period size: 50 Copynumber: 3.5 Consensus size: 50
22619623 TATCCCAAAT
* ** * * *
22619633 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCC-AGAC
1 ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATG-CCCTAGAC
*
22619683 ATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
1 ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
* * ** *
22619733 ATGGTCTTACGTGGTACCTATCATAAACTCAATAATGCCAATGCCATGTCCTAGAC
1 ATGGTCTTACGTGGGACCTCTCAT---CT---TGGTGCCAATGCCATGCCCTAGAC
*
22619789 ATGGTCTTACATGGGA--TCTCATC
1 ATGGTCTTACGTGGGACCTCTCATC
22619812 CCCTTAATGT
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
49 3 0.03
50 60 0.57
51 1 0.01
53 2 0.02
54 5 0.05
56 35 0.33
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACGTGGGACCTCTCATCTTGGTGCCAATGCCATGCCCTAGAC
Found at i:22624322 original size:23 final size:21
Alignment explanation
Indices: 22624283--22624324 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
22624273 GTACTTAAAT
22624283 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
22624304 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
22624325 ATATGGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:22631337 original size:23 final size:21
Alignment explanation
Indices: 22631298--22631339 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
22631288 TTACTTAAGT
22631298 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
22631319 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
22631340 ATATGGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:22632921 original size:46 final size:46
Alignment explanation
Indices: 22632868--22633014 Score: 145
Period size: 46 Copynumber: 3.2 Consensus size: 46
22632858 CACGTGAAAG
22632868 TAATAGTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAATCGAA
1 TAATAGTGCCTAGTTACCCA-TTAGGGTTAAACCTACACGAATCGAA
** * * * *
22632914 TAATAGTGTTTGGTCT-CCCATTAGGGTTAAACCTACTCAAATTGGAA
1 TAATAGTGCCTAGT-TACCCATTAGGGTTAAACCTACACGAA-TCGAA
* * * * * *
22632961 AAATGGTGCCTAGTTACCCGTTAGGGTTGAACCTACACGAATTGGA
1 TAATAGTGCCTAGTTACCCATTAGGGTTAAACCTACACGAATCGAA
22633007 TAATAGTG
1 TAATAGTG
22633015 TTTGGTCACC
Statistics
Matches: 78, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
45 2 0.03
46 41 0.53
47 35 0.45
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (46 bp):
TAATAGTGCCTAGTTACCCATTAGGGTTAAACCTACACGAATCGAA
Found at i:22632994 original size:47 final size:46
Alignment explanation
Indices: 22632869--22633047 Score: 137
Period size: 46 Copynumber: 3.9 Consensus size: 46
22632859 ACGTGAAAGT
* * * * *
22632869 AATAGTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAA-TCGAA
1 AATAGTGCCTAGTCACCC-GTTAGGGTTGAACCTACACAAATTGGAA
** * * * * *
22632914 TAATAGTGTTTGGTCTCCCATTAGGGTTAAACCTACTCAAATTGGAAA
1 -AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGG-AA
* * * *
22632962 AATGGTGCCTAGTTACCCGTTAGGGTTGAACCTACACGAATTGGAT
1 AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGGAA
** * *
22633008 AATAGTGTTTGGTCACCTGTTAGGGTTGAACCTACACAAA
1 AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAA
22633048 AAATAGCCTG
Statistics
Matches: 103, Mismatches: 27, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
45 2 0.02
46 63 0.61
47 36 0.35
48 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (46 bp):
AATAGTGCCTAGTCACCCGTTAGGGTTGAACCTACACAAATTGGAA
Found at i:22633032 original size:93 final size:93
Alignment explanation
Indices: 22632873--22633047 Score: 253
Period size: 93 Copynumber: 1.9 Consensus size: 93
22632863 GAAAGTAATA
*
22632873 GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCTCCCATTAG
1 GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTAG
*
22632938 GGTTAAACCTACTCAAATTGGAAAAATG
66 GGTTAAACCTACACAAATTGGAAAAATG
* * * * **
22632966 GTGCCTAGTTACCC-GTTAGGGTTGAACCTACACGAATTGGATAATAGTGTTTGGTCACCTGTTA
1 GTGCCTAGTTACCCACTT-GGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTA
*
22633030 GGGTTGAACCTACACAAA
65 GGGTTAAACCTACACAAA
22633048 AAATAGCCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (93 bp):
GTGCCTAGTTACCCACTTGGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCACCCATTAG
GGTTAAACCTACACAAATTGGAAAAATG
Found at i:22633039 original size:46 final size:46
Alignment explanation
Indices: 22632891--22633044 Score: 164
Period size: 46 Copynumber: 3.3 Consensus size: 46
22632881 TTACCCACTT
* * * *
22632891 GGGTTAAACCTACACGAATCGAATAATAGTGTTTGGTCTCCCATTA
1 GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
* * * * ** * *
22632937 GGGTTAAACCTACTCAAATTGGAAAAATGGTGCCTAGTTACCCGTTA
1 GGGTTAAACCTACACGAATTGG-ATAATAGTGTTTGGTCACCCGTTA
* *
22632984 GGGTTGAACCTACACGAATTGGATAATAGTGTTTGGTCACCTGTTA
1 GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
*
22633030 GGGTTGAACCTACAC
1 GGGTTAAACCTACAC
22633045 AAAAAATAGC
Statistics
Matches: 85, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
46 50 0.59
47 35 0.41
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (46 bp):
GGGTTAAACCTACACGAATTGGATAATAGTGTTTGGTCACCCGTTA
Found at i:22633874 original size:51 final size:49
Alignment explanation
Indices: 22633810--22634101 Score: 198
Period size: 51 Copynumber: 5.8 Consensus size: 49
22633800 TATCGATGAA
*
22633810 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATCGATAAAT-TTGGT
* * * * * *
22633861 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACGTGTGTAGTACTTA-TGAAGGCTACTACGTGTATCGATAA-ATTTG-GT
* * * *
22633912 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATCGATAAA-TTTGGT
* * * * * * *
22633963 TACATGTGTGGTACTAAGTGAAGGCTACTATG-GATACCGGA-AAGCTTTGGT
1 CACGTGTGTAGTACTTA-TGAAGGCTACTACGTG-TATC-GATAA-ATTTGGT
* * * * *
22634014 CATGTATGTAGTACTATATGAAGGCTACTATGTG-AGTCG-TAAAACTTGAT
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTA-TCGAT-AAATTTGGT
*
22634064 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC
1 CACGTGTGTAGTACT-TATGAAGGCTACTACGTGTATC
22634102 AAATGATAAA
Statistics
Matches: 183, Mismatches: 42, Indels: 33
0.71 0.16 0.13
Matches are distributed among these distances:
50 41 0.22
51 137 0.75
52 5 0.03
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTTATGAAGGCTACTACGTGTATCGATAAATTTGGT
Found at i:22633939 original size:102 final size:101
Alignment explanation
Indices: 22633810--22634099 Score: 340
Period size: 102 Copynumber: 2.9 Consensus size: 101
22633800 TATCGATGAA
22633810 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCG-TAAATAATGGTCACATGTGTAGTAC
*
22633875 TAAGTGAAGGCTACTATGTGTACC-GAGAAGTTTTGAG-
65 TAAGTGAAGGCTACTATGTGTACCGGA-AAGCTTTG-GT
* * * *
22633912 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTGGTA
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATC-GTAAA-TAATGGTCACATGTGTAGTA
22633976 CTAAGTGAAGGCTACTATG-GATACCGGAAAGCTTTGGT
64 CTAAGTGAAGGCTACTATGTG-TACCGGAAAGCTTTGGT
* * * * * * *
22634014 CATGTATGTAGTACTATATGAAGGCTACTATGTG-AGTCGTAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTA-TCGTAAATA-ATGGTCACATGTGTAGTA
* *
22634077 CTATGTGAAGGCTACTACGTGTA
64 CTAAGTGAAGGCTACTATGTGTA
22634100 TCAAATGATA
Statistics
Matches: 161, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
101 40 0.25
102 117 0.73
103 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTATGAAGGCTACTACGTGTATCGTAAATAATGGTCACATGTGTAGTACT
AAGTGAAGGCTACTATGTGTACCGGAAAGCTTTGGT
Found at i:22640875 original size:51 final size:50
Alignment explanation
Indices: 22640811--22641104 Score: 249
Period size: 51 Copynumber: 5.8 Consensus size: 50
22640801 TATCGATGAA
* * *
22640811 CACGTGTGTAGTACTGTGTGAGGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-TTGGT
* * * * * *
22640862 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATTTG-GT
* * * *
22640913 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TTTGGT
* * * * * *
22640964 TACATGTGTGGTACTAAGTGAAGGCTACTA--TGGATACAGGA-AAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTAT-C--GATAA-ATTTGGT
* * * *
22641015 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGAT-AAATTTGGT
22641065 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
22641105 ATGATAAAAA
Statistics
Matches: 188, Mismatches: 40, Indels: 30
0.73 0.16 0.12
Matches are distributed among these distances:
49 4 0.02
50 42 0.22
51 135 0.72
52 5 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATTTGGT
Found at i:22640987 original size:102 final size:102
Alignment explanation
Indices: 22640811--22641100 Score: 358
Period size: 102 Copynumber: 2.9 Consensus size: 102
22640801 TATCGATGAA
* *
22640811 CACGTGTGTAGTACTGTGTGAGGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
* *
22640875 CTAAGTGAAGGCTACTATGTGTAC-CGAGAAGTTTTGAG-
65 CTAAGTGAAGGCTACTATGTGTACAGGA-AAGCTTTG-GT
* * *
22640913 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTGGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
22640978 TAAGTGAAGGCTACTATG-GATACAGGAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTG-TACAGGAAAGCTTTGGT
* * * * * *
22641015 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGTA
* *
22641078 CTATGTGAAGGCTACTACGTGTA
65 CTAAGTGAAGGCTACTATGTGTA
22641101 TCGAATGATA
Statistics
Matches: 164, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
101 38 0.23
102 123 0.75
103 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACAGGAAAGCTTTGGT
Found at i:22644484 original size:25 final size:26
Alignment explanation
Indices: 22644436--22644494 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
22644426 TCTCATCATT
** **
22644436 ATTTTACCCCCAATAACATTTTGATG
1 ATTTTACCCCCAATAACAAATTGACC
*
22644462 ATTTTACCCCCGAT-ACAAATTGACC
1 ATTTTACCCCCAATAACAAATTGACC
22644487 ATTTTACC
1 ATTTTACC
22644495 TCTAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTTTACCCCCAATAACAAATTGACC
Found at i:22654784 original size:26 final size:26
Alignment explanation
Indices: 22654742--22654815 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
22654732 TCTCATCATT
* * **
22654742 ATTTTACCCCCAATAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACA
* * * *
22654768 ATTTTATCTCTGGTAAAAATTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
22654794 ATTTTACCCCTAGTAAAATTTT
1 ATTTTACCCCTAGTAAAATTTT
22654816 TAGAAAATAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:22668359 original size:20 final size:20
Alignment explanation
Indices: 22668336--22668394 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 20
22668326 ATGTCCCTGT
22668336 TTGCACTATGGTGCCTCTGC
1 TTGCACTATGGTGCCTCTGC
* * * * *
22668356 TTGCACAATCGTGTCACTGT
1 TTGCACTATGGTGCCTCTGC
**
22668376 TTGCACTCCGGTGCCTCTG
1 TTGCACTATGGTGCCTCTG
22668395 TTAGCATATA
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.12, C:0.31, G:0.24, T:0.34
Consensus pattern (20 bp):
TTGCACTATGGTGCCTCTGC
Found at i:22670381 original size:18 final size:18
Alignment explanation
Indices: 22670342--22670383 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
22670332 ATTGTGTTTC
22670342 CTTAAAATTTGATTTCTT
1 CTTAAAATTTGATTTCTT
*
22670360 -TTAAAATTATTATTT-TT
1 CTTAAAATT-TGATTTCTT
22670377 CTTAAAA
1 CTTAAAA
22670384 ACTTGAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (18 bp):
CTTAAAATTTGATTTCTT
Found at i:22674810 original size:12 final size:13
Alignment explanation
Indices: 22674786--22674810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22674776 GAGATTTAAA
22674786 TTTATCTTTTTTT
1 TTTATCTTTTTTT
22674799 TTTATCTTTTTT
1 TTTATCTTTTTT
22674811 AATGATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTATCTTTTTTT
Found at i:22681810 original size:17 final size:17
Alignment explanation
Indices: 22681788--22681835 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
22681778 AGTGCATGCA
22681788 GGCTATTTGCATGTTGC
1 GGCTATTTGCATGTTGC
22681805 GGCTATTTGCATGTTGC
1 GGCTATTTGCATGTTGC
* *
22681822 AGCTCTTGTGCATG
1 GGCTATT-TGCATG
22681836 CTACATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 22 0.79
18 6 0.21
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.40
Consensus pattern (17 bp):
GGCTATTTGCATGTTGC
Found at i:22683798 original size:21 final size:19
Alignment explanation
Indices: 22683769--22683807 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
22683759 ATAGTTGCAT
22683769 TTCAATTTTCATTTGGCAATA
1 TTCAATTTT-ATTT-GCAATA
*
22683790 TTCATTTTTATTTGCAAT
1 TTCAATTTTATTTGCAAT
22683808 TACAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.54
Consensus pattern (19 bp):
TTCAATTTTATTTGCAATA
Found at i:22701942 original size:27 final size:27
Alignment explanation
Indices: 22701911--22702088 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22701901 TAAATTGTAC
22701911 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22701938 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22701964 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22701992 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22702020 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22702047 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22702074 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22702089 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22702025 original size:82 final size:81
Alignment explanation
Indices: 22701912--22702067 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22701902 AAATTGTACA
* *
22701912 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22701976 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22701993 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22702058 TGCGAGTTGA
65 TGCGAATTGA
22702068 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22702079 original size:82 final size:81
Alignment explanation
Indices: 22701908--22702088 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22701898 GATTAAATTG
* *
22701908 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22701973 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22701989 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22702053 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22702071 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22702089 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22709019 original size:27 final size:27
Alignment explanation
Indices: 22708989--22709164 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
22708979 ATATTGAGTC
* * *
22708989 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
22709016 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
22709042 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
22709070 CGCACAC-TAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
22709096 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
22709123 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
22709150 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22709165 GTACAATTAA
Statistics
Matches: 127, Mismatches: 17, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
26 32 0.25
27 86 0.68
28 9 0.07
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:22709661 original size:12 final size:12
Alignment explanation
Indices: 22709644--22709669 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22709634 ATGGCATACT
22709644 TATGTATATATA
1 TATGTATATATA
22709656 TATGTATATATA
1 TATGTATATATA
22709668 TA
1 TA
22709670 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:22724455 original size:1 final size:1
Alignment explanation
Indices: 22724449--22724493 Score: 81
Period size: 1 Copynumber: 45.0 Consensus size: 1
22724439 CTAGCATTTA
*
22724449 TTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22724494 AAATTTACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.02, C:0.00, G:0.00, T:0.98
Consensus pattern (1 bp):
T
Found at i:22724471 original size:22 final size:22
Alignment explanation
Indices: 22724445--22724491 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
22724435 CTTCCTAGCA
22724445 TTTATTTTTTTTTTTTTTTTTT
1 TTTATTTTTTTTTTTTTTTTTT
22724467 TTTATTTTTTTTTTTTTTTTTT
1 TTTATTTTTTTTTTTTTTTTTT
22724489 TTT
1 TTT
22724492 TTAAATTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96
Consensus pattern (22 bp):
TTTATTTTTTTTTTTTTTTTTT
Found at i:22724473 original size:26 final size:25
Alignment explanation
Indices: 22724444--22724493 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
22724434 CCTTCCTAGC
22724444 ATTTATTTTTTTTTTTTTTTTTTTTT
1 ATTT-TTTTTTTTTTTTTTTTTTTTT
22724470 ATTTTTTTTTTTTTTTTTTTTTTT
1 ATTTTTTTTTTTTTTTTTTTTTTT
22724494 AAATTTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.06, C:0.00, G:0.00, T:0.94
Consensus pattern (25 bp):
ATTTTTTTTTTTTTTTTTTTTTTTT
Found at i:22724499 original size:26 final size:24
Alignment explanation
Indices: 22724449--22724494 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
22724439 CTAGCATTTA
22724449 TTTTTTTTTTTTTTTTTTTTTATT
1 TTTTTTTTTTTTTTTTTTTTTATT
22724473 TTTTTTTTTTTTTTTTTTTTTA
1 TTTTTTTTTTTTTTTTTTTTTA
22724495 AATTTACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96
Consensus pattern (24 bp):
TTTTTTTTTTTTTTTTTTTTTATT
Found at i:22724712 original size:29 final size:31
Alignment explanation
Indices: 22724675--22724741 Score: 120
Period size: 29 Copynumber: 2.2 Consensus size: 31
22724665 CTAGTCTTTG
22724675 CCACCACCAACTCCACTAG-CACACTTGCT-
1 CCACCACCAACTCCACTAGCCACACTTGCTC
22724704 CCACCACCAACTCCACTAGCCACACTTGCTC
1 CCACCACCAACTCCACTAGCCACACTTGCTC
22724735 CCACCAC
1 CCACCAC
22724742 TTGTACCTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 19 0.53
30 10 0.28
31 7 0.19
ACGTcount: A:0.27, C:0.52, G:0.06, T:0.15
Consensus pattern (31 bp):
CCACCACCAACTCCACTAGCCACACTTGCTC
Found at i:22725225 original size:23 final size:23
Alignment explanation
Indices: 22725188--22725316 Score: 86
Period size: 25 Copynumber: 5.5 Consensus size: 23
22725178 TTTTTTTTGT
*
22725188 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
22725211 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
* * *
22725233 TATTA-GTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
22725255 TATTACGTATATATATATT-ATACTA
1 TATTA--TATATAT-TCTTAATACTA
* *
22725280 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
22725305 TATTATTTATAT
1 TATTATATATAT
22725317 ATATATTTTT
Statistics
Matches: 82, Mismatches: 16, Indels: 14
0.73 0.14 0.12
Matches are distributed among these distances:
21 8 0.10
22 17 0.21
23 19 0.23
24 6 0.07
25 30 0.37
26 2 0.02
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:22725292 original size:27 final size:26
Alignment explanation
Indices: 22725252--22725402 Score: 95
Period size: 25 Copynumber: 6.0 Consensus size: 26
22725242 ATTCTAAATT
*
22725252 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
22725277 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
* *
22725302 CTATATTATTTATATATATATTTTTACATG
1 CTATATTATGTATATATATA---TTA-ATA
* *
22725332 TTATCTTATGTATATAT-T-TTAAT-
1 CTATATTATGTATATATATATTAATA
* * *
22725355 -TATATTATGTATGTAT-T-TTTACA
1 CTATATTATGTATATATATATTAATA
* *
22725378 CTATATTATGTACATAT-TTTTAATA
1 CTATATTATGTATATATATATTAATA
22725403 TTATCACGTA
Statistics
Matches: 99, Mismatches: 18, Indels: 18
0.73 0.13 0.13
Matches are distributed among these distances:
22 18 0.18
24 19 0.19
25 42 0.42
29 4 0.04
30 16 0.16
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.55
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:22725362 original size:22 final size:23
Alignment explanation
Indices: 22725306--22725401 Score: 97
Period size: 24 Copynumber: 4.1 Consensus size: 23
22725296 TTAATACTAT
*
22725306 ATTAT-TTATATATATATTTTTA
1 ATTATATTATGTATATATTTTTA
*
22725328 CATGTTATCTTATGTATATA-TTTTA
1 -A--TTATATTATGTATATATTTTTA
*
22725353 ATTATATTATGTATGTATTTTTA
1 ATTATATTATGTATATATTTTTA
* *
22725376 CACTATATTATGTACATATTTTTA
1 -ATTATATTATGTATATATTTTTA
22725400 AT
1 AT
22725402 ATTATCACGT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
22 14 0.23
23 7 0.11
24 21 0.34
25 9 0.15
26 10 0.16
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (23 bp):
ATTATATTATGTATATATTTTTA
Found at i:22725403 original size:20 final size:20
Alignment explanation
Indices: 22725380--22725438 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
22725370 TTTTTACACT
22725380 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
22725400 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
22725423 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
22725439 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Done.