Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 74 of 185
Found at i:22725576 original size:16 final size:15
Alignment explanation
Indices: 22725552--22725586 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
22725542 TAATTATTAT
22725552 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
22725568 TATTTTAATATTTTA
1 TATTCTAATATTTTA
22725583 TATT
1 TATT
22725587 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:22733100 original size:29 final size:29
Alignment explanation
Indices: 22733039--22733102 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
22733029 AATTTATTTT
*
22733039 ATTGTTAATTTTCTTATTATTTTAAAGGC
1 ATTGTTAATTTTCTTATTATTTTAAAGGA
*
22733068 ATTGTTAATTTT-TTATTATTTTAGAAGTA
1 ATTGTTAATTTTCTTATTATTTTA-AAGGA
22733097 ATTGTT
1 ATTGTT
22733103 TGTTAAGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (29 bp):
ATTGTTAATTTTCTTATTATTTTAAAGGA
Found at i:22733812 original size:17 final size:17
Alignment explanation
Indices: 22733790--22733824 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22733780 AATAAGTTGT
22733790 ACGTTTAGACAATAAGA
1 ACGTTTAGACAATAAGA
*
22733807 ACGTTTAGTCAATAAGA
1 ACGTTTAGACAATAAGA
22733824 A
1 A
22733825 TATAACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (17 bp):
ACGTTTAGACAATAAGA
Found at i:22741200 original size:22 final size:22
Alignment explanation
Indices: 22741175--22741237 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
22741165 AAATATCTTT
22741175 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
*
22741197 ACTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCAACC
*
22741219 ACCCCACTAAACCACTCCA
1 ACTCCACTAAACCACTCCA
22741238 CTGAACCACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.37, C:0.52, G:0.00, T:0.11
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:22741233 original size:35 final size:35
Alignment explanation
Indices: 22741193--22741261 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
22741183 AAACCACTCC
22741193 AACCACTCCACTAAACCACCCCAACCACCCCACTA
1 AACCACTCCACTAAACCACCCCAACCACCCCACTA
* *
22741228 AACCACTCCACTGAACCACCCCAACCACTCCACT
1 AACCACTCCACTAAACCACCCCAACCACCCCACT
22741262 TGCCTACAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.35, C:0.54, G:0.01, T:0.10
Consensus pattern (35 bp):
AACCACTCCACTAAACCACCCCAACCACCCCACTA
Found at i:22741656 original size:3 final size:3
Alignment explanation
Indices: 22741624--22741672 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
22741614 GGAGAGAGTG
* * * *
22741624 TTA TTT TTA ATA TTG TTA TTA TTT TCTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
22741670 TTA
1 TTA
22741673 CTAATACCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
3 35 0.95
4 2 0.05
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22741661 original size:19 final size:18
Alignment explanation
Indices: 22741624--22741665 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
22741614 GGAGAGAGTG
*
22741624 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
22741642 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
22741661 TTATT
1 TTATT
22741666 ATTATTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:22741767 original size:23 final size:23
Alignment explanation
Indices: 22741697--22741768 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
22741687 ATCATCATTA
*
22741697 TTACTATTA-TATTATAATACCTTT
1 TTACTATTATTATTATTATA--TTT
* * * * *
22741721 TCATTATTATTACTATTGTGTTT
1 TTACTATTATTATTATTATATTT
22741744 TTACTATTATTATTATTATATTT
1 TTACTATTATTATTATTATATTT
22741767 TT
1 TT
22741769 TTTGTATTAC
Statistics
Matches: 36, Mismatches: 11, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
23 23 0.64
24 7 0.19
25 6 0.17
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (23 bp):
TTACTATTATTATTATTATATTT
Found at i:22748005 original size:206 final size:206
Alignment explanation
Indices: 22747503--22748377 Score: 1396
Period size: 203 Copynumber: 4.3 Consensus size: 206
22747493 GATCTAGCTA
*
22747503 AAGC-AGAT-CAAGATGGTTTGGCAT-CTTG-GCTTACAA-GAGCAAATCGAAGACATAGCT-AT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* *
22747562 TTGGCTTTC-CGGTGCTTA-GCTAAAGCAA-TTTAAGATGATTTGGCATATCTGTATTGTCAGAG
66 TTGGCTTTCGC-GTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
22747624 AACAAGTCGAAGTCT-GCATCTCCATTTCGACGGAGAGCAGAT-CGAT-GC-GATCTGGCCTTCA
130 AACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATAC-ATAGCAGATCTGGCCTTCA
22747685 GATGTTTATACTG
194 GATGTTTATACTG
*
22747698 AAGAAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
** *
22747763 TTGGCTTTCATGTGCTTACGCTAAAGCAAGTCTAAGA-GATTTGGCATCTTTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
22747827 ACAAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
131 AC-AAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
22747892 ATGTTTATACTG
195 ATGTTTATACTG
*
22747904 AAAGCAAGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
1 -AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGA
* * *
22747969 -TTGGCTTTCGCGTGCTTATGCTAAAGTAAGTCTAAGATGATTTGGCATCTTTGTATTGTCAGAG
65 TTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
*
22748033 AACAAGTCAAAGTCTGGCATCT-CATTTCGACGGAGAGCAG-TACATAGCAGATCT-GCCTTCAG
130 AACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
22748095 ATGTTTATACTG
195 ATGTTTATACTG
*
22748107 AAGCAAGATCCAAGATGATTTGGCATCCTTATGCTTACAAGGA--AAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
22748170 TTGGCTTTCGCGTGCTTACACTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCA-AGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* *
22748234 TCAAGTCGAAGTCTGGCATCTCCATTTCGATGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
22748299 TGTTTATACTG
196 TGTTTATACTG
22748310 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAAGCAAATCGGAAGATCATAGCT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGG-AGCAAATC-GAAGA-CATAGCT
22748375 GAT
63 GAT
22748378 CTAAGAAGCA
Statistics
Matches: 632, Mismatches: 23, Indels: 37
0.91 0.03 0.05
Matches are distributed among these distances:
195 3 0.00
196 4 0.01
197 15 0.02
198 4 0.01
199 8 0.01
200 62 0.10
201 92 0.15
202 92 0.15
203 99 0.16
204 44 0.07
205 21 0.03
206 82 0.13
207 96 0.15
208 10 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACTG
Found at i:22748539 original size:45 final size:45
Alignment explanation
Indices: 22748475--22748566 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 45
22748465 GAAGAAGCAA
22748475 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAA-ATAACAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-AAAGATAACAG
* * *
22748520 ATTTGGCGTCTTTGTATTAGACGGGGAGTAGATCAAAGATAGCAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
22748565 AT
1 AT
22748567 ATCGCCTTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 3 0.07
45 40 0.93
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (45 bp):
ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAACAG
Found at i:22750588 original size:27 final size:27
Alignment explanation
Indices: 22750555--22750733 Score: 268
Period size: 27 Copynumber: 6.6 Consensus size: 27
22750545 TAAATTGTGC
22750555 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22750582 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
22750610 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22750637 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
22750664 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
22750692 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22750719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22750734 GACTTAATAT
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.64
28 51 0.36
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:22750619 original size:55 final size:54
Alignment explanation
Indices: 22750555--22750733 Score: 295
Period size: 55 Copynumber: 3.3 Consensus size: 54
22750545 TAAATTGTGC
22750555 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
22750610 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
22750664 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
22750719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22750734 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
54 26 0.22
55 92 0.78
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:22750692 original size:82 final size:82
Alignment explanation
Indices: 22750555--22750733 Score: 304
Period size: 82 Copynumber: 2.2 Consensus size: 82
22750545 TAAATTGTGC
22750555 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
22750620 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATAT
* *
22750637 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
* *
22750702 GTGCGAGTTGATTATAT
66 GTGCGAATTGACTATAT
*
22750719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22750734 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAATTGACTATAT
Found at i:22758683 original size:28 final size:28
Alignment explanation
Indices: 22758626--22758831 Score: 323
Period size: 27 Copynumber: 7.5 Consensus size: 28
22758616 TAAATTGTGC
*
22758626 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
22758653 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
22758681 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
22758708 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
22758736 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
22758763 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
22758791 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
22758818 AGC-CTGAGTGTGCG
1 AGCACTAAGTGTGCG
22758832 GACTTAATAT
Statistics
Matches: 170, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
26 10 0.06
27 81 0.48
28 79 0.46
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:22758690 original size:55 final size:55
Alignment explanation
Indices: 22758626--22758831 Score: 351
Period size: 55 Copynumber: 3.8 Consensus size: 55
22758616 TAAATTGTGC
22758626 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
22758681 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
22758736 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
22758791 AGCACTAAGTGTGCGAGTTGATTATATAGC-CTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
22758832 GACTTAATAT
Statistics
Matches: 146, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 10 0.07
55 136 0.93
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:22763522 original size:63 final size:62
Alignment explanation
Indices: 22763425--22763719 Score: 358
Period size: 63 Copynumber: 4.7 Consensus size: 62
22763415 TATGTTACAT
* *
22763425 ATAAATAAATTACGGATTTGCGGAGGTTCGGTGGATGAGTACAGGAATCAAAATTGAAAATTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTAC-GGAATCAAAATTGAAAATTG
* * * * **
22763488 ATAAATAAATTATGGCTTTGTGAAAGTTCAGTGGATGAGTACGGTAATCAAAATTG-AAATCA
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGG-AATCAAAATTGAAAATTG
* * * * * * *
22763550 ATGAATAAATTATGGCTTTGTGGAGGTTCCGTGTATAAGCACGAGAATCAAAATTGAAATTTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACG-GAATCAAAATTGAAAATTG
* * *
22763613 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACAAGAATCAAAACTGAAATTTG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTAC-GGAATCAAAATTGAAAATTG
* * *
22763676 ATAAATAAATTATGGCTTTGCAGAGGATCGATGGATGAGTACGG
1 ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGG
22763720 GAATTAGAAT
Statistics
Matches: 198, Mismatches: 30, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
62 54 0.27
63 144 0.73
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (62 bp):
ATAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACGGAATCAAAATTGAAAATTG
Found at i:22763622 original size:125 final size:126
Alignment explanation
Indices: 22763425--22763701 Score: 353
Period size: 125 Copynumber: 2.2 Consensus size: 126
22763415 TATGTTACAT
* * * * *
22763425 ATAAATAAATTACGGATTTGCGGAGGTTCGGTGGATGAGTACAGGAATCAAAATTGAAAATTGAT
1 ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAGGAATCAAAATTGAAAATTGAT
* * *
22763490 AAATAAATTATGGCTTTGTGAAAGTTCAGTGGATGAGTAC-GGTAATCAAAATTGAAA-TCA
66 AAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAG-AATCAAAACTGAAATTCA
* * * *
22763550 ATGAATAAATTATGGCTTTGTGGAGGTTCCGTGTATAAGCAC-GAGAATCAAAATTGAAATTTGA
1 ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAG-GAATCAAAATTGAAAATTGA
* * * **
22763614 TAAATAAATTATGGCTTTGCGGAGGTTCGGTGGATGAGTACAAGAATCAAAACTGAAATTTG
65 TAAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAGAATCAAAACTGAAATTCA
*
22763676 ATAAATAAATTATGGCTTTGCAGAGG
1 ATAAATAAATTATGGCTTTGCGGAGG
22763702 ATCGATGGAT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
124 1 0.01
125 103 0.80
126 25 0.19
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.30
Consensus pattern (126 bp):
ATAAATAAATTATGGCTTTGCGGAGGTTCCGTGGATAAGCACAGGAATCAAAATTGAAAATTGAT
AAATAAATTATGGCTTTGCGAAAGTTCAGTGGATGAGTACAAGAATCAAAACTGAAATTCA
Found at i:22776659 original size:42 final size:42
Alignment explanation
Indices: 22776570--22776664 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
22776560 GCAAGTTAGT
* * * * *
22776570 GAGTTACATGGCCTGGCACACGAGCGTGTGCGGCAATTCAGA
1 GAGTTACATGGCCTGGCACACAAACGTGTGCGCCAACTCAAA
* *
22776612 TAGTTACATGGCCTGGCACACAAACGTGTGAC-CCTACTCAAA
1 GAGTTACATGGCCTGGCACACAAACGTGTG-CGCCAACTCAAA
22776654 GAGTTACATGG
1 GAGTTACATGG
22776665 GTGAGAACAC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (42 bp):
GAGTTACATGGCCTGGCACACAAACGTGTGCGCCAACTCAAA
Found at i:22778091 original size:34 final size:35
Alignment explanation
Indices: 22778053--22778120 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
22778043 TTGAGAGAAC
**
22778053 TCTATGAGAGTTAGGG-TTTTGTTTTT-GGGTTTGT
1 TCTATGAGAACTAGGGCTTTT-TTTTTGGGGTTTGT
22778087 TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTG
1 TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTG
22778121 GTTTTATACT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
34 19 0.63
35 11 0.37
ACGTcount: A:0.13, C:0.06, G:0.31, T:0.50
Consensus pattern (35 bp):
TCTATGAGAACTAGGGCTTTTTTTTTGGGGTTTGT
Found at i:22792999 original size:80 final size:79
Alignment explanation
Indices: 22792850--22793072 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
22792840 TTGAATGCTG
* * * ** * * * * *
22792850 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
22792914 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
22792930 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
22792995 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
22793010 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
22793073 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:22793053 original size:39 final size:40
Alignment explanation
Indices: 22792903--22793072 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
22792893 GGACTAAGAT
* * *
22792903 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
22792943 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
22792983 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
22793023 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
22793062 CCGAAGGCATT
1 CCGAAGGCATT
22793073 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:22793092 original size:79 final size:80
Alignment explanation
Indices: 22792925--22793107 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
22792915 GTGCGAGATA
* *
22792925 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
22792990 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
22793005 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
22793069 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
22793084 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22793108 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:22800913 original size:80 final size:79
Alignment explanation
Indices: 22800764--22800986 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
22800754 TTGAATGCTG
* * * ** * * * * *
22800764 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
22800828 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
22800844 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
22800909 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
22800924 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
22800987 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:22800967 original size:39 final size:40
Alignment explanation
Indices: 22800817--22800986 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
22800807 GGACTAAGAT
* * *
22800817 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
22800857 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
22800897 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
22800937 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
22800976 CCGAAGGCATT
1 CCGAAGGCATT
22800987 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:22801006 original size:79 final size:80
Alignment explanation
Indices: 22800839--22801021 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
22800829 GTGCGAGATA
* *
22800839 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
22800904 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
22800919 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
22800983 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
22800998 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22801022 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:22803393 original size:27 final size:27
Alignment explanation
Indices: 22803334--22803386 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22803324 GGGCATTACG
*
22803334 GTCATTTTACCTTACAGGGGTATTTCA
1 GTCATTTTACCTTACAGGGGTACTTCA
*
22803361 GTCATTTTACCCTT-CGGGGGTACTTC
1 GTCATTTTA-CCTTACAGGGGTACTTC
22803387 GATCATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCTTACAGGGGTACTTCA
Found at i:22805663 original size:16 final size:16
Alignment explanation
Indices: 22805642--22805675 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22805632 GCAACAACTC
*
22805642 TTGTTTAAAATAGTTG
1 TTGTTTAAAACAGTTG
*
22805658 TTGTTTAGAACAGTTG
1 TTGTTTAAAACAGTTG
22805674 TT
1 TT
22805676 CTTCGGGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (16 bp):
TTGTTTAAAACAGTTG
Found at i:22806506 original size:4 final size:4
Alignment explanation
Indices: 22806497--22806537 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
22806487 CAAATTAAAT
*
22806497 ATTA ATTA ATTA ATTA ATTA ATTTA ATTA ACTAA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA A-TTA ATTA A-TTA ATTA ATT
22806538 TCCCAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 26 0.79
5 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:22806524 original size:13 final size:12
Alignment explanation
Indices: 22806497--22806537 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
22806487 CAAATTAAAT
22806497 ATTAATTAATTA
1 ATTAATTAATTA
22806509 ATTAATTAATTTA
1 ATTAATTAA-TTA
*
22806522 ATTAACTAAATTA
1 ATTAA-TTAATTA
22806535 ATT
1 ATT
22806538 TCCCAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 9 0.35
13 14 0.54
14 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (12 bp):
ATTAATTAATTA
Found at i:22806553 original size:8 final size:8
Alignment explanation
Indices: 22806497--22806537 Score: 55
Period size: 9 Copynumber: 4.9 Consensus size: 8
22806487 CAAATTAAAT
22806497 ATTAATTA
1 ATTAATTA
22806505 ATTAATTA
1 ATTAATTA
22806513 ATTAATTTA
1 ATTAA-TTA
*
22806522 ATTAACTAA
1 ATTAA-TTA
22806531 ATTAATT
1 ATTAATT
22806538 TCCCAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 14 0.48
9 15 0.52
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (8 bp):
ATTAATTA
Found at i:22826137 original size:20 final size:19
Alignment explanation
Indices: 22826097--22826137 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
22826087 AAATAGTGAG
*
22826097 AAATTTATTTTCTAAGTAT
1 AAATTTATTTTCTAAGAAT
*
22826116 AAATTATATTTTCTGAGAAT
1 AAATT-TATTTTCTAAGAAT
22826136 AA
1 AA
22826138 TAATTCTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (19 bp):
AAATTTATTTTCTAAGAAT
Found at i:22847654 original size:15 final size:15
Alignment explanation
Indices: 22847634--22847666 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
22847624 TTAAATTTTT
22847634 AATTAAGATTTCTAA
1 AATTAAGATTTCTAA
22847649 AATTAAGATTTCTAA
1 AATTAAGATTTCTAA
22847664 AAT
1 AAT
22847667 ATGTATCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTAAGATTTCTAA
Found at i:22849114 original size:9 final size:9
Alignment explanation
Indices: 22849100--22849160 Score: 104
Period size: 9 Copynumber: 6.8 Consensus size: 9
22849090 TTTGGTTAAA
22849100 AATTACCCG
1 AATTACCCG
22849109 AATTACCCG
1 AATTACCCG
22849118 AATTACCCG
1 AATTACCCG
22849127 AATTACCCG
1 AATTACCCG
*
22849136 AATTAACCG
1 AATTACCCG
*
22849145 AATTAACCG
1 AATTACCCG
22849154 AATTACC
1 AATTACC
22849161 GAAAAATACC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:22873675 original size:12 final size:12
Alignment explanation
Indices: 22873660--22873689 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22873650 TTATGGCAAC
22873660 TCTTATAATAAT
1 TCTTATAATAAT
22873672 TCTTATAATAAT
1 TCTTATAATAAT
*
22873684 TTTTAT
1 TCTTAT
22873690 GTCAGTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (12 bp):
TCTTATAATAAT
Found at i:22879079 original size:20 final size:20
Alignment explanation
Indices: 22879056--22879093 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22879046 CCCTCTCAAC
*
22879056 CCTTTTCTTCAAAATCTTCA
1 CCTTTTCTGCAAAATCTTCA
22879076 CCTTTTCTGCAAAATCTT
1 CCTTTTCTGCAAAATCTT
22879094 GGCACAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.45
Consensus pattern (20 bp):
CCTTTTCTGCAAAATCTTCA
Found at i:22883930 original size:56 final size:50
Alignment explanation
Indices: 22883865--22884100 Score: 197
Period size: 50 Copynumber: 4.6 Consensus size: 50
22883855 GTGATACCAT
* * *
22883865 GTAAGACCATGTCTGGGGCATGGCATTGGCATCATTGAAATTATGAGAGGTCCCAC
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-C--CG--A-GATGAGAGGTCCCAC
* *
22883921 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAC
* * * ** *
22883971 GTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAC
* * * * * * ** *
22884021 GTAAGACCATATCTGGGATATGACATTGGCA--GTACAAGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGGTCCCAC
* *
22884070 GTAAGACCATGTTTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
22884101 TGTTATTATC
Statistics
Matches: 151, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.25
50 81 0.54
51 1 0.01
53 1 0.01
55 1 0.01
56 29 0.19
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAC
Found at i:22890722 original size:50 final size:50
Alignment explanation
Indices: 22890594--22890835 Score: 177
Period size: 50 Copynumber: 4.7 Consensus size: 50
22890584 GGTAAAGAGA
* * * *
22890594 TCCCATGTAAGACCATGTCTGGGAGATGGCATTGGCATCATTGAGGTTATGA-AAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATGAGAA-C
* * * **
22890650 TCCCATGGAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * *
22890700 TCCCCCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * ** * *
22890750 TCCCATGTAAGACCATATCTGGGATATGGCATTGG--TTGTACAAGA-AAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAAC
* *
22890798 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
22890836 TGTTGTTATC
Statistics
Matches: 154, Mismatches: 27, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
48 4 0.03
49 36 0.23
50 75 0.49
51 1 0.01
52 1 0.01
53 2 0.01
55 1 0.01
56 34 0.22
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:22891116 original size:58 final size:58
Alignment explanation
Indices: 22891049--22891164 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
22891039 TAAATAGGTA
22891049 AGTAAATAAACAAGTAAATAAGAGTAAGTATAGAGGAAACTTAAGAACATGATACTTG
1 AGTAAATAAACAAGTAAATAAGAGTAAGTATAGAGGAAACTTAAGAACATGATACTTG
22891107 AGTAAATAAACAAGTAAATAAGAGTAAGTATAGAGGAAACTTAAGAACATGATACTTG
1 AGTAAATAAACAAGTAAATAAGAGTAAGTATAGAGGAAACTTAAGAACATGATACTTG
22891165 CATATTATTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (58 bp):
AGTAAATAAACAAGTAAATAAGAGTAAGTATAGAGGAAACTTAAGAACATGATACTTG
Found at i:22897810 original size:20 final size:18
Alignment explanation
Indices: 22897763--22897869 Score: 60
Period size: 19 Copynumber: 5.8 Consensus size: 18
22897753 CAAGGTAAAC
22897763 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
22897780 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
22897800 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
22897819 ATTAAGA-TAAGTATTAAAT
1 ATTAA-ATTAA-TATTTAAT
* *
22897838 -TTAATTTAATATTAAACT
1 ATTAAATTAATATTTAA-T
*
22897856 ATTAAAATAATATT
1 ATTAAATTAATATT
22897870 ATTTTTGGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 18
0.70 0.11 0.18
Matches are distributed among these distances:
17 15 0.22
18 9 0.13
19 27 0.39
20 18 0.26
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:22901729 original size:137 final size:137
Alignment explanation
Indices: 22901471--22901737 Score: 311
Period size: 137 Copynumber: 1.9 Consensus size: 137
22901461 AGCCATAAAC
** * * *
22901471 GGGTATGCTCACACAAGTTGACGGTTAGAATGTAGCTACACGATGCCGCTTACACAAGATGACGA
1 GGGTATGCTCACACAAGCAGACGGTCAGAATGTAGCTACACAATGCCGCTCACACAAGATGACGA
* *
22901536 GTATATGCAAAAAATGCCGGAACTCAGCCATCAATAGCATATTCAGGACCAACACCCAAAACATG
66 GTATATGCAAAAAATGCCGGAACTCAGCCATCAATAGAACATTCAGGACCAACACCCAAAACATG
22901601 GTAACCT
131 GTAACCT
* * * * * **
22901608 GGGTCTGCTTACACAAGCAGACGGTCGGAATGTAAGCTACACAATGCTGCTCACACAAGTTGGTG
1 GGGTATGCTCACACAAGCAGACGGTCAGAATGT-AGCTACACAATGCCGCTCACACAAGATGACG
* * * * * ** * *
22901673 AGT-TCTGCAACAAATGTCGGACCTCAGCTATCGGTAGAACATTCAGGACCAGCACCCGAAACAT
65 AGTATATGCAAAAAATGCCGGAACTCAGCCATCAATAGAACATTCAGGACCAACACCCAAAACAT
22901737 G
130 G
22901738 AAAACCCTAA
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
137 78 0.74
138 28 0.26
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (137 bp):
GGGTATGCTCACACAAGCAGACGGTCAGAATGTAGCTACACAATGCCGCTCACACAAGATGACGA
GTATATGCAAAAAATGCCGGAACTCAGCCATCAATAGAACATTCAGGACCAACACCCAAAACATG
GTAACCT
Found at i:22904807 original size:28 final size:28
Alignment explanation
Indices: 22904761--22905015 Score: 290
Period size: 28 Copynumber: 9.3 Consensus size: 28
22904751 CTATTCAGTA
**
22904761 ACAGT-ACAGTGT-GGCCTTAGCCTGAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* *
22904787 ACAGTAATAGTGTGGGCCTTAGCCCGAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
22904815 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* * *
22904843 ATAGTAACAATGTGGGCCTTAGCCCCAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
22904871 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* ** **
22904899 ACAGTAAC--TAGT--ACAGTA-CAAAAAT
1 ACAGTAACAGT-GTGGGCCTTAGC-CCAAT
*
22904924 GCAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* *
22904952 ACAGTAACACTGTGGGCCTTAGCCTAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
22904980 ACTGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
22905008 ATAGTAAC
1 ACAGTAAC
22905016 TAGTACAGTG
Statistics
Matches: 191, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.01
25 13 0.07
26 8 0.04
27 9 0.05
28 159 0.83
29 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:22904943 original size:109 final size:109
Alignment explanation
Indices: 22904816--22905035 Score: 368
Period size: 109 Copynumber: 2.0 Consensus size: 109
22904806 TAGCCCGATA
* *
22904816 CAGTAACAGTGTGGGCCTTAGCCCAATATAGTAACAATGTGGGCCTTAGCCCCATACAGTAACAG
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAG
22904881 TGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAAAAATG
66 TGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAAAAATG
* * *
22904925 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACACTGTGGGCCTTAGCCTAATACTGTAACAG
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAG
* * *
22904990 TGTGGGCCTTAGCCCAATATAGTAACTAGTACAGTGCAATAATG
66 TGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAAAAATG
22905034 CA
1 CA
22905036 ACCCATCCCA
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 103 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (109 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACAATGTGGGCCTTAGCCCAATACAGTAACAG
TGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAAAAATG
Found at i:22904952 original size:53 final size:53
Alignment explanation
Indices: 22904872--22905035 Score: 188
Period size: 53 Copynumber: 3.0 Consensus size: 53
22904862 TAGCCCCATA
*
22904872 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAAAAATG
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAATAATG
* ** * *
22904925 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAAC-ACTGTGGGCCTTAGC-CTAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACTA--GT--ACAGTA-CAATAATG
* * *
22904981 CTGTAACAGTGTGGGCCTTAGCCCAATATAGTAACTAGTACAGTGCAATAATG
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAATAATG
22905034 CA
1 CA
22905036 ACCCATCCCA
Statistics
Matches: 89, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
52 2 0.02
53 42 0.47
54 2 0.02
55 2 0.02
56 39 0.44
57 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (53 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAACTAGTACAGTACAATAATG
Found at i:22908287 original size:101 final size:101
Alignment explanation
Indices: 22908169--22908353 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 101
22908159 AAAGTGATTG
* *
22908169 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATTGAAAT-G-ATGGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCG-AATGGAAT-GGTCACATGTGTAGT
22908232 ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
64 ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
* ** *
22908270 TCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTATCGGATGGAAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGG-AATGGTCACATGTGTAGTA
22908335 CTATGTGCAGGCTACTATG
65 CTATGTGCAGGCTACTATG
22908354 TGAACCGGGT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 2 0.03
101 37 0.49
102 34 0.45
103 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGAATGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
Found at i:22908354 original size:51 final size:49
Alignment explanation
Indices: 22908168--22908355 Score: 198
Period size: 51 Copynumber: 3.7 Consensus size: 49
22908158 GAAAGTGATT
* ** * *
22908168 GTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATTGAAATGATGG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCG-AATGATCG
* * * *
22908218 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAAT-G-ATCG
* * * *
22908269 ATCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTATCGGATGGAAAT-G
1 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAAT-G--ATCG
22908320 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
22908356 AACCGGGTAC
Statistics
Matches: 113, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
49 3 0.03
50 35 0.31
51 74 0.65
52 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (49 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGATCG
Found at i:22910519 original size:25 final size:23
Alignment explanation
Indices: 22910472--22910520 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
22910462 ATTAGTTTAT
*
22910472 TGATATTTTAATTTGATTTTTAA
1 TGATATTTTAATTTGATTATTAA
*
22910495 TGATATTTTATTATTTTATTATTAA
1 TGATATTTTA--ATTTGATTATTAA
22910520 T
1 T
22910521 TTATTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 10 0.45
25 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (23 bp):
TGATATTTTAATTTGATTATTAA
Found at i:22914012 original size:120 final size:120
Alignment explanation
Indices: 22913875--22914192 Score: 627
Period size: 120 Copynumber: 2.6 Consensus size: 120
22913865 GAATTTTTGT
*
22913875 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATTTTTAATAA
1 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
22913940 TAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTTA
66 TAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTTA
22913995 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
1 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
22914060 TAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTTA
66 TAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTTA
22914115 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
1 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
22914180 TAATTATGTTAAA
66 TAATTATGTTAAA
22914193 ATATGATTAA
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 197 1.00
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (120 bp):
TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAA
TAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTTA
Found at i:22914022 original size:61 final size:61
Alignment explanation
Indices: 22913957--22914144 Score: 196
Period size: 57 Copynumber: 3.1 Consensus size: 61
22913947 GTTAAATTAT
22913957 ATTTTATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGA
* * * * *
22914018 ATTTTAT--TA-AAT-TA-TAT-ATTTTAATTAAAATGTT-TTTAATAATAATT-ATGT-TAAAT
1 ATTTTATAGTATCATATATTATGATTTT-AGT-AAAT-TTATATAAGAAT-ATTGAT-TATTAA-
*
22914074 TA
60 GA
22914076 TATTTTATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGA
1 -ATTTTATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGA
22914138 ATTTTAT
1 ATTTTAT
22914145 TAAATTATAT
Statistics
Matches: 99, Mismatches: 12, Indels: 32
0.69 0.08 0.22
Matches are distributed among these distances:
55 5 0.05
56 5 0.05
57 18 0.18
58 9 0.09
59 9 0.09
61 16 0.16
62 9 0.09
63 18 0.18
64 5 0.05
65 5 0.05
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTTAGTAAATTTATATAAGAATATTGATTATTAAGA
Found at i:22914290 original size:157 final size:157
Alignment explanation
Indices: 22914128--22914435 Score: 553
Period size: 157 Copynumber: 2.0 Consensus size: 157
22914118 AAGAATATTG
* * *
22914128 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAATAATTATGTTAAA
1 ATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTTAATAATAATTATGTTAAA
* *
22914193 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
22914258 ATAATTTACCAAAACAAATTTCTGGTA
131 ATAATTTACCAAAACAAATTTCTGGTA
*
22914285 ATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTTAATAATAATTATGTTAAA
22914350 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
*
22914415 ATCATTTACCAAAACAAATTT
131 ATAATTTACCAAAACAAATTT
22914436 ATGCTAAGGG
Statistics
Matches: 144, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
ATTATTAAGAATTTTATTAAATTATATACTTTAATTAAAATATATTTAATAATAATTATGTTAAA
ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTCTGGTA
Found at i:22914586 original size:16 final size:16
Alignment explanation
Indices: 22914565--22914616 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
22914555 GATTTGCTAT
22914565 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
22914581 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
22914597 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
22914613 TACA
1 TACA
22914617 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:22916111 original size:26 final size:26
Alignment explanation
Indices: 22916080--22916186 Score: 135
Period size: 26 Copynumber: 4.1 Consensus size: 26
22916070 AACAGACCAA
* * *
22916080 TATCGCAAAAAAGTTGCCAGTAATAG
1 TATCGCAGAAAAGCTGCCAGTAACAG
*
22916106 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGAAAAGCTGCCAGTAACAG
*
22916132 TATCGCAGCAAAA-CTACCAGTAACAG
1 TATCGCAG-AAAAGCTGCCAGTAACAG
* *
22916158 TATCGCAGCAAAGTTGCCAGTAACAG
1 TATCGCAGAAAAGCTGCCAGTAACAG
22916184 TAT
1 TAT
22916187 ATGTGGAAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 3 0.04
26 64 0.91
27 3 0.04
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
TATCGCAGAAAAGCTGCCAGTAACAG
Found at i:22916468 original size:27 final size:27
Alignment explanation
Indices: 22916438--22916753 Score: 275
Period size: 27 Copynumber: 11.7 Consensus size: 27
22916428 ATCCTATGGT
22916438 GGTATTTCAGTCATTTTACCCTTCGAG
1 GGTATTTCAGTCATTTTACCCTTCGAG
* *
22916465 GGTA-TTCCGATCATTTCACCCTTCG-G
1 GGTATTTCAG-TCATTTTACCCTTCGAG
* *
22916491 GGATATTT-TGATCATTTGACCCTTCG-G
1 GG-TATTTCAG-TCATTTTACCCTTCGAG
*
22916518 GGTATTTC-GATCATTTTACCCTTCGGG
1 GGTATTTCAG-TCATTTTACCCTTCGAG
* *
22916545 GGTATTTCAATCATTTTACCCTTCGGG
1 GGTATTTCAGTCATTTTACCCTTCGAG
** *
22916572 GGTATTTTGGTCATTTTACCCTTCGAT
1 GGTATTTCAGTCATTTTACCCTTCGAG
* **
22916599 GGTATTTAAGTCATTTTACCAATCGAG
1 GGTATTTCAGTCATTTTACCCTTCGAG
* ** * *
22916626 GGTATTT-TGATCATTTTATGCTTCTAT
1 GGTATTTCAG-TCATTTTACCCTTCGAG
* ** *
22916653 GATATTTTGGTCATTTTACCCATCGAG
1 GGTATTTCAGTCATTTTACCCTTCGAG
* * *
22916680 GGTATTTCAGTTATTTTAACCATCGAG
1 GGTATTTCAGTCATTTTACCCTTCGAG
* * **
22916707 GGTATTTCGGTCATTTTACCCATAAAG
1 GGTATTTCAGTCATTTTACCCTTCGAG
*
22916734 GGTATTTCGGTCATTTTACC
1 GGTATTTCAGTCATTTTACC
22916754 TATCAAGGTT
Statistics
Matches: 241, Mismatches: 40, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
26 29 0.12
27 209 0.87
28 3 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTCAGTCATTTTACCCTTCGAG
Found at i:22916641 original size:81 final size:81
Alignment explanation
Indices: 22916438--22916753 Score: 357
Period size: 81 Copynumber: 3.9 Consensus size: 81
22916428 ATCCTATGGT
* * * * *
22916438 GGTATTTCAGTCATTTTACCCTTCGAGGGTATTCCGATCATTTCACCCTTCGGGGATATTTTGAT
1 GGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTTGGT
*
22916503 CATTTGACCCTTCG-G
66 CATTTTACCCTTCGAG
* * * * *
22916518 GGTATTTC-GATCATTTTACCCTTCGGGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTTGG
1 GGTATTTCAG-TCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTTGG
*
22916582 TCATTTTACCCTTCGAT
65 TCATTTTACCCTTCGAG
* * * ** * *
22916599 GGTATTTAAGTCATTTTACCAATCGAGGGTATTTTGATCATTTTATGCTTCTATGATATTTTGGT
1 GGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTTGGT
*
22916664 CATTTTACCCATCGAG
66 CATTTTACCCTTCGAG
* * * * ** * *
22916680 GGTATTTCAGTTATTTTAACCATCGAGGGTATTTCGGTCATTTTACCCATAAAGGGTATTTCGGT
1 GGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTTGGT
22916745 CATTTTACC
66 CATTTTACC
22916754 TATCAAGGTT
Statistics
Matches: 197, Mismatches: 36, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
79 1 0.01
80 70 0.36
81 125 0.63
82 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTCAGTCATTTTACCCATCGAGGGTATTTCGATCATTTTACCCTTCGAGGATATTTTGGT
CATTTTACCCTTCGAG
Found at i:22916761 original size:27 final size:27
Alignment explanation
Indices: 22916420--22916776 Score: 234
Period size: 27 Copynumber: 13.3 Consensus size: 27
22916410 GGGTATAACA
*
22916420 GTCATTTTATCCTAT-G-GTGGTATTTCA
1 GTCATTTTA-CCTATCGAG-GGTATTTCG
*
22916447 GTCATTTTACCCT-TCGAGGGTATTCCG
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* * *
22916474 ATCATTTCACCCT-TCG-GGGATATTTTG
1 GTCATTTTA-CCTATCGAGGG-TATTTCG
* *
22916501 ATCATTTGACCCT-TCG-GGGTATTTCG
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* * *
22916527 ATCATTTTACCCT-TCGGGGGTATTTCA
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* * *
22916554 ATCATTTTACCCT-TCGGGGGTATTTTG
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* **
22916581 GTCATTTTACCCT-TCGATGGTATTTAA
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* *
22916608 GTCATTTTACCAATCGAGGGTATTTTG
1 GTCATTTTACCTATCGAGGGTATTTCG
* * * * * *
22916635 ATCATTTTATGCT-TCTATGATATTTTG
1 GTCATTTTA-CCTATCGAGGGTATTTCG
* *
22916662 GTCATTTTACCCATCGAGGGTATTTCA
1 GTCATTTTACCTATCGAGGGTATTTCG
*
22916689 GTTATTTTAACC-ATCGAGGGTATTTCG
1 GTCATTTT-ACCTATCGAGGGTATTTCG
* **
22916716 GTCATTTTACCCATAAAGGGTATTTCG
1 GTCATTTTACCTATCGAGGGTATTTCG
* *
22916743 GTCATTTTACCTATCAAGGTTATTTCG
1 GTCATTTTACCTATCGAGGGTATTTCG
*
22916770 ATCATTT
1 GTCATTT
22916777 GCCCACAAAT
Statistics
Matches: 276, Mismatches: 45, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
26 31 0.11
27 240 0.87
28 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCTATCGAGGGTATTTCG
Found at i:22916767 original size:81 final size:80
Alignment explanation
Indices: 22916420--22916776 Score: 285
Period size: 81 Copynumber: 4.4 Consensus size: 80
22916410 GGGTATAACA
*** * * * *
22916420 GTCATTTTATCCTATGGTGGTATTTCAGTCATTTTACCCTTCGAGGGTATTCCGATCATTTCACC
1 GTCATTTTA-CCTATCAAGGTATTTCAGTCATTTTAACCATCGAGGGTATTTCGATCATTTTACC
*
22916485 CTTC-GGGGATATTTTG
65 CTTCAAGGG-TATTTTG
* * ** * * * *
22916501 ATCATTTGACCCT-TCGGGGTATTTC-GATCATTTTACCCTTCGGGGGTATTTCAATCATTTTAC
1 GTCATTTTA-CCTATCAAGGTATTTCAG-TCATTTTAACCATCGAGGGTATTTCGATCATTTTAC
**
22916564 CCTTCGGGGGTATTTTG
64 CCTTCAAGGGTATTTTG
* * *
22916581 GTCATTTTACCCT-TCGATGGTATTTAAGTCATTTT-ACCAATCGAGGGTATTTTGATCATTTTA
1 GTCATTTTA-CCTATC-AAGGTATTTCAGTCATTTTAACC-ATCGAGGGTATTTCGATCATTTTA
** * * *
22916644 TGCTTCTATGATATTTTG
63 CCCTTCAAGGGTATTTTG
* * * *
22916662 GTCATTTTACCCATCGAGGGTATTTCAGTTATTTTAACCATCGAGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCTATC-AAGGTATTTCAGTCATTTTAACCATCGAGGGTATTTCGATCATTTTACC
* * *
22916727 CATAAAGGGTATTTCG
65 CTTCAAGGGTATTTTG
22916743 GTCATTTTACCTATCAAGGTTATTTC-GATCATTT
1 GTCATTTTACCTATCAAGG-TATTTCAG-TCATTT
22916777 GCCCACAAAT
Statistics
Matches: 225, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
79 1 0.00
80 75 0.33
81 145 0.64
82 4 0.02
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCTATCAAGGTATTTCAGTCATTTTAACCATCGAGGGTATTTCGATCATTTTACCC
TTCAAGGGTATTTTG
Found at i:22923218 original size:47 final size:47
Alignment explanation
Indices: 22923166--22923714 Score: 855
Period size: 47 Copynumber: 11.6 Consensus size: 47
22923156 GATAATTGTG
* * *
22923166 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22923213 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
22923260 ATGTGAAATTTTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22923309 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22923358 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22923405 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22923452 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22923501 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22923548 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22923595 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22923642 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22923689 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22923715 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 33, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
47 330 0.71
49 133 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22923315 original size:143 final size:143
Alignment explanation
Indices: 22923166--22923714 Score: 872
Period size: 143 Copynumber: 3.9 Consensus size: 143
22923156 GATAATTGTG
*
22923166 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
22923229 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAATTTTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAA
22923294 TGGCCAATGTGATGA
129 TGGCCAATGTGATGA
*
22923309 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
22923374 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATG
22923439 GCCAATGTGATGA
131 GCCAATGTGATGA
22923452 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
22923517 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATG
*
22923582 GCCGATGTGATGA
131 GCCAATGTGATGA
* *
22923595 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
22923658 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAG
22923715 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 20, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
141 99 0.26
143 191 0.50
144 2 0.01
145 92 0.24
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATG
GCCAATGTGATGA
Found at i:22926333 original size:40 final size:40
Alignment explanation
Indices: 22925943--22926321 Score: 586
Period size: 40 Copynumber: 9.6 Consensus size: 40
22925933 CGACGATGAC
*
22925943 CCGGGCTAAGTCCCGAAGAGCATT-ATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
22925982 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA-
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
22926021 CCGGGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
22926060 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
22926100 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
22926140 CCGGACTAAGTCTCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
22926180 CCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
22926220 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * * *
22926260 CCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATGTAT
*
22926300 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
22926322 ATCATGTTGG
Statistics
Matches: 316, Mismatches: 19, Indels: 9
0.92 0.06 0.03
Matches are distributed among these distances:
38 13 0.04
39 75 0.24
40 226 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:22929712 original size:47 final size:47
Alignment explanation
Indices: 22929660--22930259 Score: 932
Period size: 47 Copynumber: 12.6 Consensus size: 47
22929650 GATAATTGTG
* * *
22929660 ATGTGAATGTATATATATGTGATAAGGTCTAATGGCC-AGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGA
*
22929707 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22929754 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22929803 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22929850 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22929899 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22929948 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22929995 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
22930044 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22930093 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22930140 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
22930187 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22930234 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22930260 TCCCGAAGGG
Statistics
Matches: 521, Mismatches: 25, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 285 0.55
48 1 0.00
49 235 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22929725 original size:96 final size:96
Alignment explanation
Indices: 22929660--22930259 Score: 957
Period size: 96 Copynumber: 6.3 Consensus size: 96
22929650 GATAATTGTG
*
22929660 ATGTG-AA-TGTATATATATGTGATAAGGTCTAATGGCC-AGTGTGATGAATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATA
*
22929722 TATGTGATAAGGCCGAATGGCCGATGTGATGA
65 TATGTGATAAGGCCTAATGGCCGATGTGATGA
22929754 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
22929819 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
22929850 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
22929915 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
22929948 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
22930011 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
22930044 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
22930109 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
22930140 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
22930203 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
22930234 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
22930260 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 19, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
94 99 0.21
95 3 0.01
96 284 0.59
97 1 0.00
98 91 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:22929816 original size:145 final size:144
Alignment explanation
Indices: 22929660--22930259 Score: 976
Period size: 145 Copynumber: 4.2 Consensus size: 144
22929650 GATAATTGTG
* * * *
22929660 ATGTGAATGTATATATATGTGATAAGGTCTAATGGCC-AGTGTGATGAATGTGAAAGTG-TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGA-TGTGATGAATGTGAAAGTGATATAT
*
22929723 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
22929788 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
22929803 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT
22929868 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
22929933 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
*
22929948 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG-ATATAT
*
22930013 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
22930078 TGGCCGATGTGATGA
130 TGGCCGATGTGATGA
* *
22930093 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * *
22930157 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
* * *
22930220 GGCCAACGTGATGG
131 GGCCGATGTGATGA
*
22930234 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
22930260 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
141 54 0.12
143 97 0.22
144 1 0.00
145 282 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGATATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGA
Found at i:22937915 original size:14 final size:14
Alignment explanation
Indices: 22937896--22937925 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22937886 TTCGCTAATA
*
22937896 TGTCTTTTGTATTT
1 TGTCTTTTATATTT
22937910 TGTCTTTTATATTT
1 TGTCTTTTATATTT
22937924 TG
1 TG
22937926 CATGCATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.07, G:0.13, T:0.70
Consensus pattern (14 bp):
TGTCTTTTATATTT
Found at i:22939708 original size:16 final size:16
Alignment explanation
Indices: 22939680--22939739 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
22939670 AATATTAAAT
22939680 TAATATAATATTTATC
1 TAATATAATATTTATC
*
22939696 TAATATAATATTTCTC
1 TAATATAATATTTATC
*
22939712 TTGATA-AATATTATAT-
1 -TAATATAATATT-TATC
*
22939728 TAATTTAATATT
1 TAATATAATATT
22939740 AAAGTTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
15 3 0.08
16 27 0.75
17 6 0.17
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (16 bp):
TAATATAATATTTATC
Found at i:22939740 original size:16 final size:16
Alignment explanation
Indices: 22939666--22939740 Score: 55
Period size: 16 Copynumber: 4.7 Consensus size: 16
22939656 TTTTAATAAT
*
22939666 ATTTAATATTAAATTA
1 ATTTAATATTATATTA
*
22939682 ATATAATATT-TATCTA
1 ATTTAATATTATAT-TA
* * * *
22939698 ATATAATATTTCTCTTG
1 ATTTAATA-TTATATTA
*
22939715 A-TAAATATTATATTA
1 ATTTAATATTATATTA
22939730 ATTTAATATTA
1 ATTTAATATTA
22939741 AAGTTATTAA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
15 8 0.18
16 31 0.69
17 4 0.09
18 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (16 bp):
ATTTAATATTATATTA
Found at i:22944118 original size:51 final size:51
Alignment explanation
Indices: 22944063--22944241 Score: 225
Period size: 51 Copynumber: 3.5 Consensus size: 51
22944053 AATGAATACG
**
22944063 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
* * * * * * * *
22944114 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGTCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGAATCGATAA-ATGATGGTCACA
** *
22944165 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
22944216 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
22944242 TGTGTACTGA
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
50 1 0.01
51 101 0.98
52 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
Found at i:22944236 original size:102 final size:102
Alignment explanation
Indices: 22944060--22944257 Score: 360
Period size: 102 Copynumber: 1.9 Consensus size: 102
22944050 ATCAATGAAT
*
22944060 ACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTACT
1 ACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAGTACT
*
22944125 AAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGTC
66 AAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGTC
22944162 ACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAGTACT
1 ACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAGTACT
* *
22944227 AAGTGAAGGCTACTATGTGTACTGAAAAGCT
66 AAGTGAAGGCTACAATGTGTACCGAAAAGCT
22944258 ATGTGAAGGC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (102 bp):
ACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCACATGTGTAGTACT
AAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGTC
Found at i:22944315 original size:50 final size:50
Alignment explanation
Indices: 22944256--22944376 Score: 206
Period size: 50 Copynumber: 2.4 Consensus size: 50
22944246 TACTGAAAAG
*
22944256 CTATGTGAAGGCTACTACGTGAACCGTAAAACTTAATCACGTGTGCAGTA
1 CTATGTGAAGGCTACTACGTGAACCATAAAACTTAATCACGTGTGCAGTA
* * *
22944306 CTATGTGAAGGCTACCACGTGAACCATAAAACTTGATCACGTGTGTAGTA
1 CTATGTGAAGGCTACTACGTGAACCATAAAACTTAATCACGTGTGCAGTA
22944356 CTATGTGAAGGCTACTACGTG
1 CTATGTGAAGGCTACTACGTG
22944377 TATCGAATGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (50 bp):
CTATGTGAAGGCTACTACGTGAACCATAAAACTTAATCACGTGTGCAGTA
Found at i:22944643 original size:37 final size:38
Alignment explanation
Indices: 22944574--22944646 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
22944564 ATGTGTGGAA
* **
22944574 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
22944612 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
22944647 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:22948479 original size:27 final size:27
Alignment explanation
Indices: 22948449--22948654 Score: 340
Period size: 27 Copynumber: 7.6 Consensus size: 27
22948439 ATATTAAGTC
* * *
22948449 CGCACACTCAATGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
22948476 CGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
22948503 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
22948530 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
22948558 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
22948585 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
22948613 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
22948640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22948655 GCACAATTTA
Statistics
Matches: 169, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
27 116 0.69
28 53 0.31
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:22948588 original size:55 final size:55
Alignment explanation
Indices: 22948449--22948654 Score: 351
Period size: 55 Copynumber: 3.8 Consensus size: 55
22948439 ATATTAAGTC
* * * *
22948449 CGCACACTCAATGCTATATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
22948503 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
22948558 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
22948613 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
22948655 GCACAATTTA
Statistics
Matches: 146, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 46 0.32
55 100 0.68
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:22948588 original size:82 final size:82
Alignment explanation
Indices: 22948449--22948654 Score: 342
Period size: 82 Copynumber: 2.5 Consensus size: 82
22948439 ATATTAAGTC
* * *
22948449 CGCACACTCAATGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
22948514 TGCTACATAGTC-AACT
66 TGCTACATAGTCAAACT
* *
22948530 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTA
22948595 GTGCTACATAGTCAAACT
65 GTGCTACATAGTCAAACT
*
22948613 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
22948655 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
81 20 0.17
82 70 0.60
83 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
TGCTACATAGTCAAACT
Found at i:22969362 original size:16 final size:16
Alignment explanation
Indices: 22969341--22969371 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22969331 TCTTCTCAAG
*
22969341 AAACCCCAAAAAAACA
1 AAACCCAAAAAAAACA
22969357 AAACCCAAAAAAAAC
1 AAACCCAAAAAAAAC
22969372 CAAGACTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (16 bp):
AAACCCAAAAAAAACA
Found at i:22971950 original size:17 final size:17
Alignment explanation
Indices: 22971928--22971961 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22971918 TCGGCCTGAA
22971928 TTGCGACATACTATTCG
1 TTGCGACATACTATTCG
22971945 TTGCGACATACTATTCG
1 TTGCGACATACTATTCG
22971962 GAGCATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (17 bp):
TTGCGACATACTATTCG
Found at i:22991156 original size:39 final size:38
Alignment explanation
Indices: 22991112--22991213 Score: 109
Period size: 39 Copynumber: 2.7 Consensus size: 38
22991102 CCACCAGCCA
*
22991112 CCACCATCGTCGTTCACTAGTTAGGTAGTCACCACTTAT
1 CCACCATCATCGTTCACTAGTTAGGTAGTCACCAC-TAT
* * * *
22991151 CCACCATCATTGTTCA-TCAGTCAAGTAGTCACCACTGT
1 CCACCATCATCGTTCACT-AGTTAGGTAGTCACCACTAT
*
22991189 CCACCATCATCATTCAGC-AGTTAGG
1 CCACCATCATCGTTCA-CTAGTTAGG
22991214 GCTAATCTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
38 22 0.43
39 29 0.57
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (38 bp):
CCACCATCATCGTTCACTAGTTAGGTAGTCACCACTAT
Found at i:22992655 original size:23 final size:22
Alignment explanation
Indices: 22992612--22992655 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
22992602 TTTCAAGTCA
22992612 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
22992635 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
22992656 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:22992780 original size:23 final size:23
Alignment explanation
Indices: 22992754--22992898 Score: 245
Period size: 23 Copynumber: 6.3 Consensus size: 23
22992744 ATAAGTGCCA
22992754 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
22992777 CACTAAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
22992800 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
22992823 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
22992846 GACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
22992869 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
22992892 CACTGAT
1 CACTGAT
22992899 CAATAACACT
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 112 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:22993150 original size:18 final size:17
Alignment explanation
Indices: 22993124--22993162 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
22993114 ATTTTCCTTC
22993124 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
22993141 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
22993159 CACA
1 CACA
22993163 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:22997860 original size:58 final size:54
Alignment explanation
Indices: 22997798--22997907 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
22997788 GAAATTATTA
* *
22997798 TGGTTTTCTCCAAAATGAAAATGAAGATGGAGAAAATGGAATCATTTGGAAATGAATG
1 TGGTTTTCT-CAAAATGAAAATAAAAAT-GAG-AAAT-GAATCATTTGGAAATGAATG
*
22997856 TGGTTTTCTCAAAATGAAAATAAAAATGAGAAATGATTCATTTGGAAATGAA
1 TGGTTTTCTCAAAATGAAAATAAAAATGAGAAATGAATCATTTGGAAATGAA
22997908 AAAGGATTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
54 17 0.35
55 4 0.08
56 3 0.06
57 16 0.33
58 9 0.18
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (54 bp):
TGGTTTTCTCAAAATGAAAATAAAAATGAGAAATGAATCATTTGGAAATGAATG
Found at i:22997922 original size:54 final size:57
Alignment explanation
Indices: 22997808--22997923 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 57
22997798 TGGTTTTCTC
* * *** * **
22997808 CAAAATGAAAATGAAGATGGAGAAAATGGAATCATTTGGAAATGAATGTGGTTTTCT
1 CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
*
22997865 CAAAATGAAAATAAAAAT-GAG-AAAT-GATTCATTTGGAAATGAAAAAGGATTAAT
1 CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
22997919 CAAAA
1 CAAAA
22997924 ATGATCTAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
54 27 0.54
55 4 0.08
56 3 0.06
57 16 0.32
ACGTcount: A:0.50, C:0.05, G:0.20, T:0.25
Consensus pattern (57 bp):
CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
Found at i:23003107 original size:9 final size:10
Alignment explanation
Indices: 23003082--23003108 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
23003072 CCCTTCATAG
23003082 AATTTTTCTA
1 AATTTTTCTA
23003092 AATTTTTCTA
1 AATTTTTCTA
23003102 AATTTTT
1 AATTTTT
23003109 TCAAATGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (10 bp):
AATTTTTCTA
Found at i:23006567 original size:47 final size:47
Alignment explanation
Indices: 23006498--23006591 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
23006488 ATTGTGATTG
23006498 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
1 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
*
23006545 CTTGAGGTTTGACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
1 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
23006592 AATAGTTGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (47 bp):
CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
Found at i:23008321 original size:23 final size:23
Alignment explanation
Indices: 23008295--23008341 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
23008285 GATGAAAGAA
23008295 AGCATGCAATTCAAATAGACAAT
1 AGCATGCAATTCAAATAGACAAT
23008318 AGCATGCAATTCAAATAGACAAT
1 AGCATGCAATTCAAATAGACAAT
23008341 A
1 A
23008342 AAATAAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (23 bp):
AGCATGCAATTCAAATAGACAAT
Found at i:23008736 original size:20 final size:20
Alignment explanation
Indices: 23008700--23008737 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23008690 GTGAAATTTG
*
23008700 TATGAAAATATAGAATTAAT
1 TATGAAAATATAAAATTAAT
23008720 TATGAAGAATA-AAAATTA
1 TATGAA-AATATAAAATTA
23008738 GTCTCGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAT
Found at i:23028688 original size:9 final size:9
Alignment explanation
Indices: 23028674--23028703 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
23028664 ATTAAAATAT
23028674 TAATTAAAC
1 TAATTAAAC
*
23028683 TAATTAAAT
1 TAATTAAAC
23028692 TAATTAAAC
1 TAATTAAAC
23028701 TAA
1 TAA
23028704 AATAACCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAC
Found at i:23028732 original size:29 final size:29
Alignment explanation
Indices: 23028691--23028746 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
23028681 ACTAATTAAA
*
23028691 TTAATTAAACTAAAATAACCTAATGGATT
1 TTAACTAAACTAAAATAACCTAATGGATT
* * *
23028720 TTAACTAACCTAAGATATCCTAATGGA
1 TTAACTAAACTAAAATAACCTAATGGA
23028747 ATTTCCTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (29 bp):
TTAACTAAACTAAAATAACCTAATGGATT
Found at i:23030958 original size:50 final size:50
Alignment explanation
Indices: 23030850--23031026 Score: 185
Period size: 50 Copynumber: 3.4 Consensus size: 50
23030840 ATTTGGGTAA
* * *
23030850 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
23030906 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
23030956 AGAGGTCCCCCGTAAGACCGTATCTGGGACATGGCATGGGCACCGATG-TG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATG
**
23031006 AGAACTCCCATGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
23031027 ATTTGGGATG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
50 61 0.58
51 1 0.01
53 3 0.03
55 1 0.01
56 39 0.37
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:23035623 original size:50 final size:49
Alignment explanation
Indices: 23035522--23035761 Score: 169
Period size: 50 Copynumber: 4.7 Consensus size: 49
23035512 TAAAGAGATG
* * *
23035522 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATGAGAGGTC
1 CCATGTAAGACCATGTCCGGGACATGGC-TTGGCA-C--CGAG---ATGAGAGGTC
* **
23035578 CCATGTAAAACTGTGTCCGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCCGGGACATGGC-TTGGCACCGAGATGAGAGGTC
* * * * * **
23035628 CCCTGTAAGACCACGTCTGGGACATGGCATGGCCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCCGGGACATGGCTTGG-CACCGAGATGAGAGGTC
* * * * * **
23035678 CCATGTAAGACCATATCCGGGATATGGCATTGGCA--GTACAAGAAACATC
1 CCATGTAAGACCATGTCCGGGACATGGC-TTGGCACCG-AGATGAGAGGTC
*
23035727 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCCGGGACATGGC-TTGGCA
23035762 TGTTATTATC
Statistics
Matches: 149, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 41 0.28
50 71 0.48
51 3 0.02
53 3 0.02
55 1 0.01
56 29 0.19
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (49 bp):
CCATGTAAGACCATGTCCGGGACATGGCTTGGCACCGAGATGAGAGGTC
Found at i:23038397 original size:27 final size:27
Alignment explanation
Indices: 23038367--23038544 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23038357 ATATTGAGTC
* * * *
23038367 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23038394 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23038421 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23038449 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23038476 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23038503 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23038530 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23038545 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23038506 original size:82 final size:81
Alignment explanation
Indices: 23038388--23038543 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23038378 TGCTATATAA
* *
23038388 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23038453 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23038470 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23038534 CACTTAGTGC
65 CACTTAGTGC
23038544 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23063588 original size:50 final size:50
Alignment explanation
Indices: 23063459--23063603 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 50
23063449 TCCTGTACTT
* * * * * ** *
23063459 CCAATGCCATATCTTAGATATTGTCTTACATGGGAGTTCTCATATTGGTG
1 CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
* * * * *
23063509 CCCATGCAATTGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCA-TGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
*
23063560 CCAATGCCATGTCCTAGACATGGTCTTACGTGTGACCTCTCATA
1 CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATA
23063604 ACCTCAATAA
Statistics
Matches: 75, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
50 38 0.51
51 37 0.49
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (50 bp):
CCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:23065654 original size:29 final size:27
Alignment explanation
Indices: 23065636--23065705 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
23065626 ATATTAAGTC
23065636 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
23065663 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
23065691 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
23065706 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:23065699 original size:28 final size:28
Alignment explanation
Indices: 23065636--23065733 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
23065626 ATATTAAGTC
*
23065636 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
23065663 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
23065691 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
23065720 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23065734 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:23073732 original size:27 final size:27
Alignment explanation
Indices: 23073715--23073783 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
23073705 ATATTAAGTC
23073715 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
23073742 CGCACACTTAGTGCTA-ATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
23073769 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
23073784 GTACAATTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:23073806 original size:29 final size:27
Alignment explanation
Indices: 23073714--23073811 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
23073704 TATATTAAGT
* *
23073714 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTA-ACAATCAAAC
* *
23073741 TCGCACACTTAGTGCTAATAATCAAAC
1 CCGCACACTTAGTGCTAACAATCAAAC
* * *
23073768 TCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCT-AACAA-TCAAAC
23073797 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
23073812 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.10
27 34 0.55
28 3 0.05
29 19 0.31
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CCGCACACTTAGTGCTAACAATCAAAC
Found at i:23075707 original size:10 final size:11
Alignment explanation
Indices: 23075684--23075708 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23075674 CGAGGACTCC
23075684 AAAAACATTAA
1 AAAAACATTAA
23075695 AAAAACATTAA
1 AAAAACATTAA
23075706 AAA
1 AAA
23075709 CGGGGTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:23082176 original size:20 final size:20
Alignment explanation
Indices: 23082141--23082189 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
23082131 ATCATAGTCT
*
23082141 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
23082160 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
23082180 TTGCTTACTT
1 TTGCTTACTT
23082190 ATATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:23082516 original size:50 final size:50
Alignment explanation
Indices: 23082392--23082570 Score: 184
Period size: 50 Copynumber: 3.6 Consensus size: 50
23082382 GATAATAACA
* * *
23082392 TGCCAAAGCCATATCCCAGACATGGTCTTACATGGGATGTT-TCCTGTAC--
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
** *
23082441 TTTCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** ** *
23082491 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* *
23082541 TGCCAATGCCATGTCCTAGACATGGTCTTA
1 TGCCAATGCCATATCCCAGACATGGTCTTA
23082571 TGTGTGACCT
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 37 0.34
50 68 0.62
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:23082580 original size:50 final size:50
Alignment explanation
Indices: 23082444--23082586 Score: 187
Period size: 50 Copynumber: 2.9 Consensus size: 50
23082434 CCTGTACTTT
* * * **
23082444 CAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
* * *
23082494 CCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
* * *
23082544 CAATGCCATGTCCTAGACATGGTCTTATGTGTGACCTCTCATA
1 CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
23082587 ACCTCAATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTGC
Found at i:23083009 original size:30 final size:30
Alignment explanation
Indices: 23082975--23083033 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23082965 TCCTTGACTC
23082975 AAAC-TTTGACAAAATTATAATTTTGCCCCT
1 AAACTTTTG-CAAAATTATAATTTTGCCCCT
* * *
23083005 AAACTTTTGCATATTTATACTTTTGCCCC
1 AAACTTTTGCAAAATTATAATTTTGCCCC
23083034 AAAGCTCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTATAATTTTGCCCCT
Found at i:23083366 original size:10 final size:11
Alignment explanation
Indices: 23083343--23083367 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23083333 CGAGGACTCC
23083343 AAAAACATTAA
1 AAAAACATTAA
23083354 AAAAACATTAA
1 AAAAACATTAA
23083365 AAA
1 AAA
23083368 CGGGGCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:23089305 original size:21 final size:21
Alignment explanation
Indices: 23089279--23089345 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
23089269 TTATTTTCAG
23089279 CAACTTCCTCTTCTTCAGCAA
1 CAACTTCCTCTTCTTCAGCAA
23089300 CAACTTCCTCTTC-T-A-CAA
1 CAACTTCCTCTTCTTCAGCAA
* * *
23089318 AAACTT-CTACTTCTGCAGCAT
1 CAACTTCCT-CTTCTTCAGCAA
23089339 CAACTTC
1 CAACTTC
23089346 TTTCTCAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 1 0.03
20 2 0.05
21 20 0.54
ACGTcount: A:0.27, C:0.36, G:0.04, T:0.33
Consensus pattern (21 bp):
CAACTTCCTCTTCTTCAGCAA
Found at i:23097854 original size:55 final size:55
Alignment explanation
Indices: 23097787--23097895 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
23097777 GTTCTTATCC
* **
23097787 AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTGGAATTAACACATGT
1 AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
* * * * *
23097842 AGACATCTGTCAAGTGCGGCGACAATTCTGGATGCAATCTAAAATTAACTCATG
1 AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATG
23097896 CAACGACATT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (55 bp):
AGACAGCTGTCAAGTGCGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
Found at i:23098961 original size:19 final size:19
Alignment explanation
Indices: 23098939--23098976 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23098929 TCAATCATCC
23098939 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
23098958 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
23098977 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:23108660 original size:19 final size:19
Alignment explanation
Indices: 23108638--23108675 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23108628 TCAATCATCC
23108638 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
23108657 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
23108676 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:23110660 original size:27 final size:27
Alignment explanation
Indices: 23110630--23110807 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23110620 ATATTGAGTC
* * * *
23110630 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23110657 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23110684 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23110712 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23110739 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23110766 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23110793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23110808 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23110769 original size:82 final size:81
Alignment explanation
Indices: 23110651--23110806 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23110641 TGCTATATAA
* *
23110651 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23110716 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23110733 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23110797 CACTTAGTGC
65 CACTTAGTGC
23110807 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23116059 original size:27 final size:27
Alignment explanation
Indices: 23116007--23116061 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
23115997 TTGTATAAGT
*
23116007 AGCCCAAATATCACAACTTGTATGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
* * *
23116034 AGCCCAAATATCATAGCTTCTGTGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
23116061 A
1 A
23116062 AATCGAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (27 bp):
AGCCCAAATATCACAACTTCTATGAGC
Found at i:23122168 original size:11 final size:11
Alignment explanation
Indices: 23122154--23122194 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
23122144 ACCACCACTT
23122154 CACCACCATAA
1 CACCACCATAA
*
23122165 CACCACCATAC
1 CACCACCATAA
23122176 CACCACCATAA
1 CACCACCATAA
23122187 CACCACCA
1 CACCACCA
23122195 CCATAGCACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.41, C:0.51, G:0.00, T:0.07
Consensus pattern (11 bp):
CACCACCATAA
Found at i:23122171 original size:22 final size:23
Alignment explanation
Indices: 23122144--23122195 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
23122134 ATTCGATATT
*
23122144 ACCACCACT-TCACCACCATAAC
1 ACCACCACTACCACCACCATAAC
23122166 ACCACCA-TACCACCACCATAAC
1 ACCACCACTACCACCACCATAAC
23122188 ACCACCAC
1 ACCACCAC
23122196 CATAGCACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.10
Consensus pattern (23 bp):
ACCACCACTACCACCACCATAAC
Found at i:23122195 original size:25 final size:25
Alignment explanation
Indices: 23122154--23122218 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
23122144 ACCACCACTT
23122154 CACCACCAT-A-A-CACCACCATAC
1 CACCACCATAACACCACCACCATAC
*
23122176 CACCACCATAACACCACCACCATAG
1 CACCACCATAACACCACCACCATAC
* * *
23122201 CACAACCGTACCACCACC
1 CACCACCATAACACCACC
23122219 TTTGCACCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 9 0.25
23 1 0.03
24 1 0.03
25 25 0.69
ACGTcount: A:0.38, C:0.51, G:0.03, T:0.08
Consensus pattern (25 bp):
CACCACCATAACACCACCACCATAC
Found at i:23126454 original size:14 final size:14
Alignment explanation
Indices: 23126435--23126481 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
23126425 TAAGTATTTT
23126435 TTAAGTTTAATTAA
1 TTAAGTTTAATTAA
23126449 TTAAGTTTAATTAAA
1 TTAAGTTTAATT-AA
***
23126464 TTAAACATAATTAA
1 TTAAGTTTAATTAA
23126478 TTAA
1 TTAA
23126482 CTAAAACATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (14 bp):
TTAAGTTTAATTAA
Found at i:23131589 original size:29 final size:28
Alignment explanation
Indices: 23131542--23131599 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
23131532 CCTTATCCAT
*
23131542 TTTTTTAATAAATGACCTAATATTTTTA
1 TTTTTTAATAAATGACCTAATATGTTTA
* *
23131570 TTTTTTATATAAGTGGCCTAATATGTTTA
1 TTTTTTA-ATAAATGACCTAATATGTTTA
23131599 T
1 T
23131600 ACTTCTTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (28 bp):
TTTTTTAATAAATGACCTAATATGTTTA
Found at i:23132453 original size:3 final size:3
Alignment explanation
Indices: 23132440--23132504 Score: 98
Period size: 3 Copynumber: 22.3 Consensus size: 3
23132430 GGAAATTTTC
*
23132440 TCT TAT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T-T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
23132487 TCT TCT TC- TCT GCT TCT T
1 TCT TCT TCT TCT TCT TCT T
23132505 TTTTTATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 4 0.07
3 52 0.93
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:23137929 original size:41 final size:43
Alignment explanation
Indices: 23137880--23137987 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
23137870 AACCGTTACT
* * *
23137880 CGGTGGAATCAGCAGTTAGCAACCAAC-TT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACC-ACTTTCACAATCAAG-GATA
* *
23137922 CGG-GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACTTTCACAATCAAGGATA
23137964 CGGTGGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
23137988 CCTCGAGGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.02
41 20 0.36
42 14 0.25
43 21 0.38
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACTTTCACAATCAAGGATA
Found at i:23138051 original size:41 final size:41
Alignment explanation
Indices: 23137994--23138101 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 41
23137984 AACCCCTCGA
*
23137994 GGAATCTGCACTTAGCAACCCCTTTTTGATTAGTGATTCAG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
*
23138035 GGAATCTGCACTTAGCAACCCC-TTTTGATCAGTGATTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
23138075 GGAATCTGCACTTAGCAACCCCTTTTT
1 GGAATCTGCACTTAGCAACCCCTTTTT
23138102 TTTCAATAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 38 0.59
41 26 0.41
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
Found at i:23138171 original size:20 final size:20
Alignment explanation
Indices: 23138148--23138186 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23138138 GGGAACCTTA
23138148 TTTTACAATATTTT-ACCAAC
1 TTTTACAA-ATTTTCACCAAC
*
23138168 TTTTTCAAATTTTCACCAA
1 TTTTACAAATTTTCACCAA
23138187 TCCCCGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTTACAAATTTTCACCAAC
Found at i:23139377 original size:23 final size:23
Alignment explanation
Indices: 23139350--23139426 Score: 118
Period size: 23 Copynumber: 3.3 Consensus size: 23
23139340 GTTAGATTTT
* *
23139350 TTCTAAATATTGTAATTAAATAA
1 TTCTAAATATTATCATTAAATAA
23139373 TTCTAAATATTATCATTAAATAA
1 TTCTAAATATTATCATTAAATAA
*
23139396 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCATTAAATAA
*
23139419 TTCAAAAT
1 TTCTAAAT
23139427 TTTAAAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.48, C:0.09, G:0.01, T:0.42
Consensus pattern (23 bp):
TTCTAAATATTATCATTAAATAA
Found at i:23148085 original size:15 final size:15
Alignment explanation
Indices: 23148067--23148104 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
23148057 TCTTCTAAAG
23148067 AAATAAAATACTCAT
1 AAATAAAATACTCAT
*
23148082 AAATAAAAT-CTCCT
1 AAATAAAATACTCAT
23148096 -AATAAAATA
1 AAATAAAATA
23148105 ATAATAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 8 0.38
14 4 0.19
15 9 0.43
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAAATACTCAT
Found at i:23151078 original size:16 final size:16
Alignment explanation
Indices: 23151057--23151118 Score: 90
Period size: 16 Copynumber: 3.9 Consensus size: 16
23151047 GCTGTATTGG
23151057 AATAGAGGCGTAATGA
1 AATAGAGGCGTAATGA
23151073 AATAGAGGCGTAAT-A
1 AATAGAGGCGTAATGA
* *
23151088 GAATAGAGGTGTAATGG
1 -AATAGAGGCGTAATGA
23151105 AATAGAGGCGTAAT
1 AATAGAGGCGTAAT
23151119 AGCAAATCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
15 1 0.02
16 40 0.98
ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21
Consensus pattern (16 bp):
AATAGAGGCGTAATGA
Found at i:23151102 original size:32 final size:32
Alignment explanation
Indices: 23151056--23151120 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
23151046 CGCTGTATTG
23151056 GAATAGAGGCGTAATGAAATAGAGGCGTAATA
1 GAATAGAGGCGTAATGAAATAGAGGCGTAATA
* *
23151088 GAATAGAGGTGTAATGGAATAGAGGCGTAATA
1 GAATAGAGGCGTAATGAAATAGAGGCGTAATA
23151120 G
1 G
23151121 CAAATCAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.05, G:0.34, T:0.20
Consensus pattern (32 bp):
GAATAGAGGCGTAATGAAATAGAGGCGTAATA
Done.