Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 75 of 185
Found at i:23151419 original size:119 final size:118
Alignment explanation
Indices: 23151282--23151507 Score: 409
Period size: 118 Copynumber: 1.9 Consensus size: 118
23151272 ATAATTTAAT
* *
23151282 TATATTTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAGTAAAATTCTTA
1 TATAATTTAACATAATTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATT-TTA
23151347 ATATTAAATATTCTTATATGAATTTTCT-AAATCATAATATATAATACTATAAAA
64 ATATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAA
23151401 TATAATTTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTTTAAT
1 TATAATTTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTTTAAT
23151466 ATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATA
66 ATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATA
23151508 TAATACTACA
Statistics
Matches: 104, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
117 31 0.30
118 37 0.36
119 36 0.35
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.45
Consensus pattern (118 bp):
TATAATTTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTTTAAT
ATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAA
Found at i:23151470 original size:17 final size:17
Alignment explanation
Indices: 23151426--23151459 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23151416 TTATTATTAA
23151426 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23151443 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23151460 TTTAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23151554 original size:118 final size:118
Alignment explanation
Indices: 23151288--23151512 Score: 391
Period size: 117 Copynumber: 1.9 Consensus size: 118
23151278 TAATTATATT
*
23151288 TTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAGTAAAATTCTTAATATTA
1 TTAACATAATTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATTA
* *
23151353 AATATTCTTATATGAATTTTCTAAATCATAATATATAATACTATAAAATATAAT
65 AATATTCTTATATGAATTTTCTAAATCATAATATATAATAATATAAAATATAAC
23151407 TTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATT-TTAATATTAA
1 TTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTCTTAATATTAA
23151471 ATATTCTTATATGAATTTTCTAAAATCATAATATAT-ATAATA
66 ATATTCTTATATGAATTTTCT-AAATCATAATATATAATAATA
23151513 CTACAATACT
Statistics
Matches: 103, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
117 36 0.35
118 36 0.35
119 31 0.30
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (118 bp):
TTAACATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTCTTAATATTAA
ATATTCTTATATGAATTTTCTAAATCATAATATATAATAATATAAAATATAAC
Found at i:23151633 original size:14 final size:15
Alignment explanation
Indices: 23151614--23151646 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
23151604 CTTTATTCTT
*
23151614 AAAATTCAAAAA-TA
1 AAAATTAAAAAACTA
23151628 AAAATTAAAAAACTA
1 AAAATTAAAAAACTA
23151643 AAAA
1 AAAA
23151647 ATTTAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAAACTA
Found at i:23152115 original size:58 final size:58
Alignment explanation
Indices: 23151992--23152130 Score: 197
Period size: 59 Copynumber: 2.4 Consensus size: 58
23151982 AAAGTTGCTA
* * *
23151992 TGTTTTGGCACTAAAAGCAACCGCAAGCCACAACTACCAGCATGTCAAGGATTAAATT
1 TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* * *
23152050 TGTTTTGGCACTAAAAGTAAACCACAAGTCACAAGAACCAGCATGTCAAGGATTGAATT
1 TGTTTTGGCACTAAAAG-AAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* *
23152109 TGTTTGGGCACTAAAAGCAACC
1 TGTTTTGGCACTAAAAGAAACC
23152131 GCAATTGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
58 21 0.29
59 51 0.71
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.23
Consensus pattern (58 bp):
TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
Found at i:23154476 original size:17 final size:18
Alignment explanation
Indices: 23154432--23154478 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
23154422 AATTTAGTTT
23154432 TAATATATATAATTGAATG
1 TAATATAT-TAATTGAATG
*
23154451 TAATTTATTCAATT-AA-G
1 TAATATATT-AATTGAATG
23154468 TAATATATTAA
1 TAATATATTAA
23154479 ATTTCCTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 2 0.08
17 9 0.36
18 3 0.12
19 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (18 bp):
TAATATATTAATTGAATG
Found at i:23154481 original size:17 final size:19
Alignment explanation
Indices: 23154432--23154481 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 19
23154422 AATTTAGTTT
23154432 TAATATA-TATAATTGAATG
1 TAATATATTA-AATTGAATG
* *
23154451 TAATTTATTCAATT-AA-G
1 TAATATATTAAATTGAATG
23154468 TAATATATTAAATT
1 TAATATATTAAATT
23154482 TCCTAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 13 0.50
18 2 0.08
19 10 0.38
20 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (19 bp):
TAATATATTAAATTGAATG
Found at i:23156327 original size:3 final size:3
Alignment explanation
Indices: 23156319--23156363 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
23156309 TGTTATTAAG
*
23156319 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23156364 CTATATATAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23156853 original size:17 final size:17
Alignment explanation
Indices: 23156807--23156853 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
23156797 TGTACATGTA
23156807 TATATTTATATATTTTTT
1 TATATTTATATA-TTTTT
* * *
23156825 TCTAATGA-ATATTTTT
1 TATATTTATATATTTTT
23156841 TATATTTATATAT
1 TATATTTATATAT
23156854 ATACATATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 3
0.71 0.19 0.10
Matches are distributed among these distances:
16 10 0.45
17 7 0.32
18 5 0.23
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TATATTTATATATTTTT
Found at i:23156966 original size:10 final size:10
Alignment explanation
Indices: 23156927--23156959 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
23156917 TTAACGCATA
23156927 TTTTATA-AT
1 TTTTATATAT
*
23156936 TTATATATAT
1 TTTTATATAT
23156946 TTTTATATAT
1 TTTTATATAT
23156956 TTTT
1 TTTT
23156960 CTTTATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTATATAT
Found at i:23162674 original size:21 final size:21
Alignment explanation
Indices: 23162650--23162690 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23162640 TTGTGTATTT
*
23162650 ATCCAT-GTCATAGGTAAATTC
1 ATCCATAG-CATAAGTAAATTC
23162671 ATCCATAGCATAAGTAAATT
1 ATCCATAGCATAAGTAAATT
23162691 TCTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
ATCCATAGCATAAGTAAATTC
Found at i:23170699 original size:23 final size:22
Alignment explanation
Indices: 23170646--23170695 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
23170636 AAACTGACTC
*
23170646 TTCAGATTTATCGTTTTACCCCT
1 TTCAAATTTATCGTTTTA-CCCT
*
23170669 TTCAAATTTATCGTTTT-GCCT
1 TTCAAATTTATCGTTTTACCCT
23170690 TTCAAA
1 TTCAAA
23170696 AATTATTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.36
23 16 0.64
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.48
Consensus pattern (22 bp):
TTCAAATTTATCGTTTTACCCT
Found at i:23175423 original size:55 final size:55
Alignment explanation
Indices: 23175339--23175450 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
23175329 CCAGCATTAC
23175339 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
1 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
* *
23175394 AAGAACCTACAGGGTCGCACCCTATGGTTAAAGCGAACAATATCATAATTTCAAT
1 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
23175449 AA
1 AA
23175451 TTTGATTACA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (55 bp):
AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
Found at i:23176814 original size:20 final size:20
Alignment explanation
Indices: 23176786--23176842 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
23176776 AATATTAAGA
* *
23176786 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
23176806 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
23176826 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
23176843 ACATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:23177542 original size:40 final size:40
Alignment explanation
Indices: 23177498--23177786 Score: 375
Period size: 40 Copynumber: 7.2 Consensus size: 40
23177488 AGATCAACTG
*
23177498 AACACACCAGACAAAAGCTCATAAGAGCTAATCCAACCGA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
*
23177538 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACTGA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
* * * *
23177578 AACACGCCATACAGAAGCTCATAATAGCTAATCCAACTGA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
* * **
23177618 AACACGCCAAACAGAAGCTCATAAGAGCTAATTTAACCGA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
* *
23177658 AACA-AGCCAAACAGTAGCTCATAAGAGCTAATCCAACCGA
1 AACACA-CCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
* *
23177698 AACACACCAGACAGAATCTCAT-AGAGCTAATCCAATCGA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
** * * *
23177737 AACATGCCAGACAGAAGCTCATAAAAGCTAATCCAATCAA
1 AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
*
23177777 AACACGCCAG
1 AACACACCAG
23177787 TTAGAGAGTA
Statistics
Matches: 222, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
39 35 0.16
40 186 0.84
41 1 0.00
ACGTcount: A:0.45, C:0.28, G:0.14, T:0.13
Consensus pattern (40 bp):
AACACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGA
Found at i:23183130 original size:7 final size:8
Alignment explanation
Indices: 23183113--23183165 Score: 52
Period size: 8 Copynumber: 6.0 Consensus size: 8
23183103 GAACAGAAAT
23183113 AAATAAAA
1 AAATAAAA
23183121 AAATAAAA
1 AAATAAAA
23183129 AAATAAATTTA
1 AAATAAA---A
*
23183140 AAGTAAAGA
1 AAATAAA-A
23183149 AAATAAATA
1 AAATAAA-A
23183158 AAATAAAA
1 AAATAAAA
23183166 TCCAAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
8 16 0.42
9 15 0.39
11 7 0.18
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (8 bp):
AAATAAAA
Found at i:23183134 original size:20 final size:21
Alignment explanation
Indices: 23183109--23183160 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
23183099 CAACGAACAG
23183109 AAATAAATAAAAAAATAAA-A
1 AAATAAATAAAAAAATAAAGA
** *
23183129 AAATAAAT-TTAAAGTAAAGA
1 AAATAAATAAAAAAATAAAGA
23183149 AAATAAATAAAA
1 AAATAAATAAAA
23183161 TAAAATCCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 7 0.28
20 17 0.68
21 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (21 bp):
AAATAAATAAAAAAATAAAGA
Found at i:23186390 original size:50 final size:50
Alignment explanation
Indices: 23186332--23186471 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
23186322 TATTGAGGTT
* * * *
23186332 ATGAGAGGTCCCACATAAGATCATGTCTGGGACATGGCGTTGGCTCCGAG
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* * *
23186382 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * * * * *
23186432 ATGAGAACTCTCACGTAAGACCATATCTAGGATATGGCAT
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCAT
23186472 TGGTAGTACA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:23186518 original size:49 final size:49
Alignment explanation
Indices: 23186340--23186525 Score: 151
Period size: 50 Copynumber: 3.8 Consensus size: 49
23186330 TTATGAGAGG
* * * * * * **
23186340 TCCCACATAAGATCATGTCTGGGACATGGCGTTGGCTCCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC-ACGACAGGAGAAC
* * * *
23186390 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAGGAGAAC
* * * * *
23186440 TCTCACGTAAGACCATATCTAGGATATGGCATTGGTA-GTACAGGA-AAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAGGAGAAC
* *
23186488 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
23186526 TGTTATTATC
Statistics
Matches: 108, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
48 4 0.04
49 34 0.31
50 70 0.65
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (49 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACGACAGGAGAAC
Found at i:23191010 original size:21 final size:22
Alignment explanation
Indices: 23190984--23191036 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
23190974 CAGCGGTGGT
23190984 GGTGAGATTAGG-TACTGTAGC
1 GGTGAGATTAGGATACTGTAGC
23191005 GGTGAGATT-GGATACTGTAGC
1 GGTGAGATTAGGATACTGTAGC
*
23191026 AGTGAGATTAG
1 GGTGAGATTAG
23191037 AAACAGTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.26, C:0.08, G:0.38, T:0.28
Consensus pattern (22 bp):
GGTGAGATTAGGATACTGTAGC
Found at i:23191244 original size:30 final size:30
Alignment explanation
Indices: 23191204--23191260 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
23191194 TACAATTATA
* *
23191204 TTTATTTGTATTGCTCTTACAAAAATACCT
1 TTTATGTGTATTGCGCTTACAAAAATACCT
23191234 TTTATGTGTATTGCGCTTACAAAAATA
1 TTTATGTGTATTGCGCTTACAAAAATA
23191261 TCGAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (30 bp):
TTTATGTGTATTGCGCTTACAAAAATACCT
Found at i:23197208 original size:18 final size:18
Alignment explanation
Indices: 23197185--23197223 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
23197175 TACTACGGTT
23197185 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
23197203 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
23197221 TAA
1 TAA
23197224 AAGACTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (18 bp):
TAATCATAATCGGGAAAG
Found at i:23202122 original size:22 final size:23
Alignment explanation
Indices: 23202092--23202146 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
23202082 TAAAATATTT
* *
23202092 TTAATAATTTAAAAACA-TAAAA
1 TTAAAAATTTAAAAAAACTAAAA
23202114 TTAAAAA-TTAAAAAAACTAAAA
1 TTAAAAATTTAAAAAAACTAAAA
23202136 TTAAAATATTT
1 TTAAAA-ATTT
23202147 GTTGATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 8 0.29
22 17 0.61
23 1 0.04
24 2 0.07
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAAAAATTTAAAAAAACTAAAA
Found at i:23205497 original size:20 final size:20
Alignment explanation
Indices: 23205457--23205498 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23205447 TCTCTTTTTT
* *
23205457 TTTTATCTTTCTTCTTCTTC
1 TTTTATCTTTCTGCATCTTC
*
23205477 TTTTATCTTTCTGCATGTTC
1 TTTTATCTTTCTGCATCTTC
23205497 TT
1 TT
23205499 CTTTATTTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.21, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTATCTTTCTGCATCTTC
Found at i:23208493 original size:98 final size:98
Alignment explanation
Indices: 23208319--23208517 Score: 335
Period size: 98 Copynumber: 2.0 Consensus size: 98
23208309 GTACAATAAA
**
23208319 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCATGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
23208384 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* * *
23208417 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCTAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
23208482 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
23208515 ACT
1 ACT
23208518 ATTTTTAAAA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:23209853 original size:19 final size:19
Alignment explanation
Indices: 23209829--23209941 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
23209819 AATCATATAT
23209829 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
23209848 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
23209867 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
23209886 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
**
23209907 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23209926 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23209942 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 64 0.80
21 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23209916 original size:40 final size:40
Alignment explanation
Indices: 23209829--23209940 Score: 174
Period size: 40 Copynumber: 2.9 Consensus size: 40
23209819 AATCATATAT
*
23209829 TCTAAGATTGCATATCATATCTAAGA-T-TATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
23209867 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
** *
23209907 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGTATAT
23209941 CCTCAAAAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 26 0.38
39 1 0.01
40 41 0.60
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
Found at i:23210257 original size:44 final size:43
Alignment explanation
Indices: 23210155--23211001 Score: 407
Period size: 44 Copynumber: 19.6 Consensus size: 43
23210145 CTTCAATCTA
* *
23210155 CTCCACTGCAGCTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* *
23210200 C-CTCACTGTAACTTCAGGAAGATAAGACTTGCTTCCTTAGTCTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * *
23210244 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * * * *
23210285 CT-CTCTGCAACTTTA-GAGAGATAAGATCTGTG-ATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGA-CT-TGCATCTTAGTCTG
* * * * *
23210328 CTCTACTGCAACTTCAGGGAGATAGGATTATCGGC-T-TTAATCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACT-T--GCATCTTAGTCTG
* *
23210372 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* * *
23210417 C-CTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTC-TG
* * * *
23210462 -TCCACCGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * * * * *
23210502 CT-CTCTGTAACTTCA-GAGAGATAAGA-TCTGTAATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGACT-TG-CATCTTAGTCTG
* * * * *
23210545 CTCCACTGCAACTTCA-TAGAGATAGGA-TTGTCAGCTTTAATCTA
1 CTCCACTGCAACTTCAGGA-AGATAAGACTTG-CATC-TTAGTCTG
*
23210589 CTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* * *
23210634 C-CTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTC-TG
* * ** *
23210679 -TCCACCGCAACTTCAGGGAGATAAGAC-TAAATC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCATCTTAGTCTG
** ** * * * *
23210718 CT-CTTTATAACTTCA-GAGAGATAAGATCTAT-AATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGA-CT-TGCATCTTAGTCTG
* * ** *
23210761 CTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATC-TTAGTCTG
* *
23210805 CTCCACTGCAACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGA-CTTGCATCTT-AGTCTG
* * *
23210850 C-CTCACTGTAACTTTA-GAAGGATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAA-GATAAGACTTGCAT-CTTAGTCTG
* * *
23210894 CTCCACTGCAACTTCAGGGAGATAAGACTAG-A--TGAGATCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCATCTTAG-TCTG
* * * * *
23210935 CT-CTCTGCAACTTCA-GAGGGATAAGATCTGTG-ATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGA-CT-TGCATCTTAGTCTG
*
23210978 CTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGAAGATA
23211002 GGATTGTCAA
Statistics
Matches: 614, Mismatches: 123, Indels: 131
0.71 0.14 0.15
Matches are distributed among these distances:
38 1 0.00
39 22 0.04
40 66 0.11
41 25 0.04
42 16 0.03
43 34 0.06
44 302 0.49
45 146 0.24
46 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGAAGATAAGACTTGCATCTTAGTCTG
Found at i:23210488 original size:217 final size:217
Alignment explanation
Indices: 23210144--23211023 Score: 1433
Period size: 217 Copynumber: 4.1 Consensus size: 217
23210134 AGGAATTAGT
* * * * *
23210144 GCTTCAATCTACTCCACTGCAGCTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
23210209 AACTTCAGGAAGATAAGACTTGCTTCCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
23210274 GATGCGATCTGCTCTCTGCAACTTTAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
* *
23210339 CTTCAGGGAGATAGGATTATCG
196 CTTCAGGGAGATAGGATTGTCA
*
23210361 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
23210426 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
*
23210490 AGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
130 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
**
23210555 ACTTCATAGAGATAGGATTGTCA
195 ACTTCAGGGAGATAGGATTGTCA
*
23210578 GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
23210643 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
* * ** *
23210707 AAAT-CGATCTGCTCTTTATAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCA
130 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
*
23210771 ACTTCAGGGAGATAGGATTGTCG
195 ACTTCAGGGAGATAGGATTGTCA
*
23210794 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
23210859 AACTTTAGAAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
23210924 GATGAGATCTGCTCTCTGCAACTTCAGAGGGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
131 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
23210989 CTTCAGGGAGATAGGATTGTCA
196 CTTCAGGGAGATAGGATTGTCA
*
23211011 ACTTTAATCTGCT
1 GCTTTAATCTGCT
23211024 TCCCACTATC
Statistics
Matches: 621, Mismatches: 39, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
215 2 0.00
216 201 0.32
217 416 0.67
218 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTCA
Found at i:23210960 original size:433 final size:434
Alignment explanation
Indices: 23210115--23211020 Score: 1464
Period size: 433 Copynumber: 2.1 Consensus size: 434
23210105 ATTCCTTCCT
* * * *
23210115 ACTGCATCTTCAGAG-GTATAGGAATTAGT--GCTTCAATCTACTCCACTGCAGCTTCAGGGAGA
1 ACTGCAACTTCAGAGAG-ATAGG-ATT-GTCAGCTTTAATCTACTCCACTGCAACTTCAGGAAGA
*
23210177 TAAGACTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAAGATAAGACTTGCTTCCTTAGTC
63 TAAGACTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAAGATAAGACTTGCTTACTTAGTC
* * * *
23210242 TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGAT
128 TGCTCCACCGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGAT
* * *
23210307 AAGATCTGTGATTTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTG
193 AAGATCTATAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTG
* *
23210372 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAG
258 CTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGAAG
*
23210437 GATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
323 GATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGAGATCTG
*
23210502 CTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCC
388 CTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCC
*
23210549 ACTGCAACTTCATAGAGATAGGATTGTCAGCTTTAATCTACTCCACTGCAACTTCAGGAAGATAA
1 ACTGCAACTTCAGAGAGATAGGATTGTCAGCTTTAATCTACTCCACTGCAACTTCAGGAAGATAA
* *
23210614 GATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG
66 GACTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAAGATAAGACTTGCTTACTTAGTC-TG
* *
23210679 -TCCACCGCAACTTCAGGGAGATAAGACTAAAT-CGATCTGCTCTTTATAACTTCAGAGAGATAA
130 CTCCACCGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
*
23210742 GATCTATAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCT
195 GATCTATAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCT
* *
23210807 CCACTGCAACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTGCCTCACTGTAACTTTAGAAGGA
260 CCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGAAGGA
*
23210872 TAAGACTTGCTTACTTAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGAGATCTGC
325 TAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAGATGAGATCTGC
* *
23210936 TCTCTGCAACTTCAGAGGGATAAGATCTGTGATTTTAATCCGCTCC
389 TCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCC
* *
23210982 ACTGCAACTTCAGGGAGATAGGATTGTCAACTTTAATCT
1 ACTGCAACTTCAGAGAGATAGGATTGTCAGCTTTAATCT
23211021 GCTTCCCACT
Statistics
Matches: 437, Mismatches: 30, Indels: 11
0.91 0.06 0.02
Matches are distributed among these distances:
432 4 0.01
433 290 0.66
434 140 0.32
435 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (434 bp):
ACTGCAACTTCAGAGAGATAGGATTGTCAGCTTTAATCTACTCCACTGCAACTTCAGGAAGATAA
GACTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAAGATAAGACTTGCTTACTTAGTCTGC
TCCACCGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAG
ATCTATAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTC
CACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGAAGGAT
AAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTAGATGAGATCTGCTC
TCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCC
Found at i:23211167 original size:132 final size:132
Alignment explanation
Indices: 23211016--23211763 Score: 1237
Period size: 132 Copynumber: 5.7 Consensus size: 132
23211006 TGTCAACTTT
* * * *
23211016 AATCTGCTTCCCACTATCTTAGAAAGATATGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * * *
23211081 GGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTTAGGGAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
23211146 TA
131 TA
* * * * *
23211148 AATATGCTTTCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTACTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
23211213 GGGAGATAATATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
23211278 TA
131 TA
*
23211280 AATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
23211345 GGGCGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
23211410 TA
131 TA
*
23211412 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * *
23211477 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAATGCTTGGTAGCC
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
23211542 TA
131 TA
* * *
23211544 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTTGATCTACTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
23211609 GGGAGATAAGATCTACAATCTTCAACCTTCTACGCTGCTGCT-AGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
23211673 TA
131 TA
*
23211675 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
23211740 GGGAGATAAGATCTACAATTTTCA
66 GGGAGATAAGATCTACAATTTTCA
23211764 CTGATCTGTT
Statistics
Matches: 575, Mismatches: 41, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
131 104 0.18
132 471 0.82
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
TA
Found at i:23211484 original size:44 final size:44
Alignment explanation
Indices: 23211054--23211751 Score: 154
Period size: 44 Copynumber: 15.9 Consensus size: 44
23211044 ATGATTTGTC
* *
23211054 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCA
* * * * * * * **
23211098 ATCTTCAACCTACTCCACTGCTGCTTAGGGAAACAAGGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCGCA
* * * * *
23211142 GGCTTAAATATGCTTTCCACTA-T-CTT-GGAAAGATAAGATTTGTC-
1 GTCTTCAATCTGC--TCCACTACTGCTTAGG-GAGATAAGATTCG-CA
* * * *
23211186 GTCTTCGATCTACTCCACTACTGCTTAGGGAGATAATA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCA
* * * * * * * * * **
23211230 ATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCGCA
* * * * *
23211274 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAATATAAGATTCGCC
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCGCA
* * *
23211318 GTCTTCGATCTGCTCCACTACTGCTTAGGGCGATAAGA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCA
* * * * * * * * * **
23211362 ATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCGCA
* * * *
23211406 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTCGCC
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCGCA
*
23211450 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCA
* * * * * * * * * * * *
23211494 ATTTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAATGCTTGGTA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCGCA
* * * *
23211539 G-CCTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTCGCT
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCGCA
** * *
23211582 GTCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGA-TCTACA
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-GCA
* * * * * * * * **
23211626 ATCTTCAACCTTCTACGCTGCTGC-TAGGGAGACAAGGCTT-GGT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCGCA
* * * *
23211669 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTCGCC
1 GTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATTCGCA
* *
23211713 GTCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGAT
1 GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT
23211752 CTACAATTTT
Statistics
Matches: 433, Mismatches: 169, Indels: 104
0.61 0.24 0.15
Matches are distributed among these distances:
42 31 0.07
43 62 0.14
44 293 0.68
45 25 0.06
46 22 0.05
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (44 bp):
GTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTCGCA
Found at i:23212992 original size:20 final size:20
Alignment explanation
Indices: 23212964--23213006 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23212954 TGGCCTCTCC
*
23212964 TTTTACTTTTACTTTTTCTT
1 TTTTACTTTTACCTTTTCTT
* *
23212984 TTTTCCTTTTTCCTTTTCTT
1 TTTTACTTTTACCTTTTCTT
23213004 TTT
1 TTT
23213007 CCCCTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTACTTTTACCTTTTCTT
Found at i:23212999 original size:21 final size:21
Alignment explanation
Indices: 23212970--23213015 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
23212960 CTCCTTTTAC
*
23212970 TTTTACTTTTTCTTTTT-TCCT
1 TTTTAC-TTTTCTTTTTCCCCT
*
23212991 TTTTCCTTTTCTTTTTCCCCT
1 TTTTACTTTTCTTTTTCCCCT
23213012 TTTT
1 TTTT
23213016 TTTCAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTACTTTTCTTTTTCCCCT
Found at i:23213014 original size:20 final size:20
Alignment explanation
Indices: 23212977--23213014 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
23212967 TACTTTTACT
* *
23212977 TTTTCTTTTTTCCTTTTTCC
1 TTTTCTTTTTCCCCTTTTCC
23212997 TTTTCTTTTTCCCCTTTT
1 TTTTCTTTTTCCCCTTTT
23213015 TTTTCAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTCTTTTTCCCCTTTTCC
Found at i:23217803 original size:23 final size:24
Alignment explanation
Indices: 23217775--23217821 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
23217765 ATATATATAT
23217775 GAAAATATTC-ATTTAAAAAAAAG
1 GAAAATATTCGATTTAAAAAAAAG
*
23217798 GAAAATATTCGTTTTTAAAAAAAA
1 GAAAATATTCG-ATTTAAAAAAAA
23217822 ATATATGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.48
25 11 0.52
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (24 bp):
GAAAATATTCGATTTAAAAAAAAG
Found at i:23218116 original size:22 final size:22
Alignment explanation
Indices: 23218075--23218115 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
23218065 GGATTAAATT
*
23218075 GTAATTTAAAATAAATAAAAGG
1 GTAAATTAAAATAAATAAAAGG
23218097 GTAAATTAAAA-AAATAAAA
1 GTAAATTAAAATAAATAAAA
23218116 AAAATCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (22 bp):
GTAAATTAAAATAAATAAAAGG
Found at i:23218477 original size:19 final size:19
Alignment explanation
Indices: 23218453--23218566 Score: 156
Period size: 19 Copynumber: 5.8 Consensus size: 19
23218443 AATCATATGT
23218453 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
23218472 TCTAAGGATTATATATCATC
1 TCTAA-GATTGCATATCATA
23218492 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23218511 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
23218532 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23218551 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23218567 CTCAAAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 49 0.60
20 16 0.20
21 17 0.21
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23218541 original size:40 final size:40
Alignment explanation
Indices: 23218453--23218565 Score: 176
Period size: 40 Copynumber: 2.9 Consensus size: 40
23218443 AATCATATGT
*
23218453 TCTAAGATTGCATATCATATCTAAGGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAA-GATTGCATATATCATA
23218492 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
23218532 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
23218566 CCTCAAAAAT
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
38 4 0.06
39 24 0.35
40 41 0.59
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:23218555 original size:59 final size:58
Alignment explanation
Indices: 23218453--23218566 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 58
23218443 AATCATATGT
* *
23218453 TCTAAGATTGCATATCATATCTAAGGATTATATATCATCTCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATCATA
* *
23218511 TCTAAGATTGCATATATCATATCT-TGGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTGC--ATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATC
23218567 CTCAAAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 11 0.22
59 28 0.56
60 11 0.22
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (58 bp):
TCTAAGATTGCATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATCATA
Found at i:23226880 original size:23 final size:22
Alignment explanation
Indices: 23226845--23226888 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23226835 TCATAACACA
*
23226845 TTTAGAGAATTTTGTGTTTACGT
1 TTTAAAGAATTTT-TGTTTACGT
*
23226868 TTTAAAGATTTTTTGTTTACG
1 TTTAAAGAATTTTTGTTTACG
23226889 GGTTTTTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.55
Consensus pattern (22 bp):
TTTAAAGAATTTTTGTTTACGT
Found at i:23227572 original size:18 final size:18
Alignment explanation
Indices: 23227557--23227597 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
23227547 GTATCTTTTG
23227557 AATAAATCACCACTTTCT
1 AATAAATCACCACTTTCT
23227575 AATAAATCACCACTTTCT
1 AATAAATCACCACTTTCT
23227593 AATAA
1 AATAA
23227598 GTGCTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATCACCACTTTCT
Found at i:23237471 original size:18 final size:20
Alignment explanation
Indices: 23237434--23237475 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23237424 TATTTTAAGT
*
23237434 AATTTTTTATTATAATATAA
1 AATTTTTAATTATAATATAA
*
23237454 AATTTTTAATTAAAATA-AA
1 AATTTTTAATTATAATATAA
23237473 AAT
1 AAT
23237476 AAAAAATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTTTTAATTATAATATAA
Found at i:23237816 original size:16 final size:18
Alignment explanation
Indices: 23237788--23237825 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
23237778 CTAAATAATA
23237788 AAATATAATAATTA-TTT
1 AAATATAATAATTACTTT
23237805 AAATAT-ATAATTACTTT
1 AAATATAATAATTACTTT
23237822 AAAT
1 AAAT
23237826 TCTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATAATAATTACTTT
Found at i:23238326 original size:32 final size:33
Alignment explanation
Indices: 23238286--23238350 Score: 123
Period size: 32 Copynumber: 2.0 Consensus size: 33
23238276 TTTTTAAATT
23238286 TAAATTTAATTATAAAAG-ATATAAAATATCAA
1 TAAATTTAATTATAAAAGTATATAAAATATCAA
23238318 TAAATTTAATTATAAAAGTATATAAAATATCAA
1 TAAATTTAATTATAAAAGTATATAAAATATCAA
23238351 GTGCAAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (33 bp):
TAAATTTAATTATAAAAGTATATAAAATATCAA
Found at i:23243664 original size:30 final size:29
Alignment explanation
Indices: 23243630--23243695 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
23243620 TAGTCGCTAT
* *
23243630 ATAAAAAGAAAATACAAGAGTTTTAGTTGA
1 ATAAAAAGAAAATA-AAGAATATTAGTTGA
* * * *
23243660 ATAAAGAGTAAATAAATAATATTATTTGA
1 ATAAAAAGAAAATAAAGAATATTAGTTGA
23243689 ATAAAAA
1 ATAAAAA
23243696 AATAACACAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.29
Consensus pattern (29 bp):
ATAAAAAGAAAATAAAGAATATTAGTTGA
Found at i:23245059 original size:51 final size:52
Alignment explanation
Indices: 23245002--23245277 Score: 319
Period size: 51 Copynumber: 5.1 Consensus size: 52
23244992 AGGTTATTTT
* * *
23245002 CATTTTCATTTTGGAGAAAACTACATTCATTTCCAAATGA-TTCCATTTCTC
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
* *
23245053 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA-TTCTATTTCTA
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
23245104 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAAT-ATTTCCATTTCTC
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
*
23245155 CATTTTCACTTTCATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTGCCATTTCTC
1 CA---T---TTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTT-CCATTTCTC
* *
23245213 CATTTTCACTTTTATTTTGAAGAAAACCATCATCA-TTCCAAATGATTTCCCATTTCTC
1 CATTTT--C----ATTTTGGAGAAAACCATAATCATTTCCAAATGATTT-CCATTTCTC
23245271 CATTTTC
1 CATTTTC
23245278 TCTATTTCTT
Statistics
Matches: 200, Mismatches: 10, Indels: 25
0.85 0.04 0.11
Matches are distributed among these distances:
50 1 0.00
51 95 0.47
52 3 0.01
54 2 0.01
55 1 0.00
56 9 0.05
57 29 0.14
58 60 0.30
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (52 bp):
CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
Found at i:23245114 original size:57 final size:58
Alignment explanation
Indices: 23245043--23245277 Score: 294
Period size: 58 Copynumber: 4.2 Consensus size: 58
23245033 TCCAAATGAT
* *
23245043 TCCATTTCTCCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA-TT-CTATTTC
1 TCCATTT-T-CATTTTCATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTCCCATTTC
*
23245102 T--A----CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAAT-ATTT-CCATTTC
1 TCCATTTTCATTTTCATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTCCCATTTC
* *
23245153 TCCATTTTCACTTTCATTTTGAAGAAAACCATAATCATTCCAAATGATTTGCCATTTC
1 TCCATTTTCATTTTCATTTTGAAGAAAACCATAATCATTCCAAATGATTTCCCATTTC
*
23245211 TCCATTTTCACTTTT-ATTTTGAAGAAAACCATCATCATTCCAAATGATTTCCCATTTC
1 TCCATTTTCA-TTTTCATTTTGAAGAAAACCATAATCATTCCAAATGATTTCCCATTTC
23245269 TCCATTTTC
1 TCCATTTTC
23245278 TCTATTTCTT
Statistics
Matches: 160, Mismatches: 6, Indels: 21
0.86 0.03 0.11
Matches are distributed among these distances:
50 1 0.01
51 47 0.29
53 1 0.01
56 8 0.05
57 32 0.20
58 67 0.42
59 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.42
Consensus pattern (58 bp):
TCCATTTTCATTTTCATTTTGAAGAAAACCATAATCATTCCAAATGATTTCCCATTTC
Found at i:23249048 original size:2 final size:2
Alignment explanation
Indices: 23249041--23249073 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
23249031 CATTACCAAA
*
23249041 AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
23249074 TATGAACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:23253136 original size:63 final size:63
Alignment explanation
Indices: 23253055--23253247 Score: 188
Period size: 63 Copynumber: 3.1 Consensus size: 63
23253045 TAGTTTGGCT
* ** ** *
23253055 ACAACATTATTGAGTGGCTTGACCACAACGTGCTGCTTGTATGTGATATTCAGTGGCTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGAGGCTTGACC
* * * * *
23253118 ACAACGTTATTGAGTGGCTTGACCACTATGTGCAACTTGTCTACGATATTGAGAGGTTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGAGGCTTGACC
* * * * * * * * * * *
23253181 ACAACGTTATTTAGTGGTTTGACTACAATGAGCAACTTCTCTGCAATATACAGTGGCTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGAGGCTTGACC
23253244 ACAA
1 ACAA
23253248 TGTGGAGTGT
Statistics
Matches: 107, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 107 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (63 bp):
ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGAGGCTTGACC
Found at i:23256074 original size:644 final size:643
Alignment explanation
Indices: 23254840--23256094 Score: 2077
Period size: 644 Copynumber: 1.9 Consensus size: 643
23254830 AATTGTTGAC
23254840 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
1 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
* *
23254905 TTTGTTTTGAATCAACTTACCATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCTTT
66 TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCCTT
* *
23254970 TGCCCCTAAACATACCATCTTTTCACCTTTGACTACCCATGGCCGGTCATAGCACCCCAAAAACC
131 TGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAACC
* * *
23255035 CTACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCTTCTCTTTACCGTCCACCACCCTTTT
196 CCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTCT
* * *
23255100 GCACAAGATTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCTTC
261 CCACAAGATTTTCAGCTTTTCCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCTC
* *
23255165 TTCTACTCCACCACCACACACGACAATCACACCGCCACCTTACCTCCATCATCGTCGTTGTCGCA
326 TTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGCA
* * * *
23255230 CTGTCGCCGCACCGTTGCCATCGGCCACTGTTGATTTTCACCATTTTTCTTATTTTCTTCTCTTT
391 CAGCCGCCGCACCG-TGCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTCTTT
23255295 CCAAAAATCATCTCCGTAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTTGTATT
455 CCAAAAATCATCTCCGTAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTTGTATT
** **
23255360 ATTTTCTCTAAACTCTTCTATTTTGTGTTTATAGTGTTGAATCCTCCACTTTAATCGGCTTTTCG
520 ATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTTTCG
23255425 GGATTTATCGT-TGAGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
585 GGATTTATCGTCT-AGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
*
23255484 CATTTTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
1 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
23255549 TTTGTTTTGAATCAACTTACAATCCAAAG-CCCCTGTTTTACTCATGATCCACTTTTTACTCCCT
66 TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCT-TTTTACTCATGATCCACTTTTTACTCCCT
* * *
23255613 TTGTCTCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCCCAGCACCCCAAAAAC
130 TTGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAAC
*
23255678 CCCACTTTTCATTTTATTTTTCTAGTTTTTCTCTCCTCTCCTCTCTTTACCGTCCACCACCCTTC
195 CCCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTC
*
23255743 TCCACAAGTTTTTCAGCTTTTCCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCT
260 TCCACAAGATTTTCAGCTTTTCCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCT
* * * *
23255808 CTTCCACTCCACCACCACACATGGCAATCGCACCACCACCTTACCTCCATCATCGTCGTTGTTGC
325 CTTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGC
*
23255873 ACAGCCGCTGCGCCACC-T-CCATCGACCACTGTTGATTTTCACCATTTTTCTTCTTTTCTCCTC
390 ACAGCCGC--CG-CACCGTGCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTC
* * **
23255936 TTTCCAAAAATCATCTCCGTAAATTCTTGAATTTTATTTTTAAATATTAAAATATTAGCTTTTGT
452 TTTCCAAAAATCATCTCCGTAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTTGT
* *
23256001 ATTATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGACTCGTCCACTTTAATCGGCTTT
517 ATTATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTT
* *
23256066 TTGGGATTTATTGTCTAGCCTTTTTCCTC
582 TCGGGATTTATCGTCTAGCCTTTTTCCTC
23256095 TATTTTGTAA
Statistics
Matches: 567, Mismatches: 39, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
643 5 0.01
644 554 0.98
645 2 0.00
646 2 0.00
647 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.10, T:0.40
Consensus pattern (643 bp):
CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCCTT
TGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAACC
CCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTCT
CCACAAGATTTTCAGCTTTTCCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCTC
TTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGCA
CAGCCGCCGCACCGTGCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTCTTTC
CAAAAATCATCTCCGTAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTTGTATTA
TTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTTTCGG
GATTTATCGTCTAGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
Found at i:23261609 original size:47 final size:47
Alignment explanation
Indices: 23261550--23261975 Score: 588
Period size: 47 Copynumber: 8.9 Consensus size: 47
23261540 TAGTATGGCG
*
23261550 TAATAGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
23261597 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTG--AGTGTATATATATGTGATAAGGCC
** *
23261646 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
** *
23261693 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
23261740 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTG--AGTGTATATATATGTGATAAGGCC
23261789 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTG--AGTGTATATATATGTGATAAGGCC
** *
23261838 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
** * * *
23261885 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
* * *
23261932 -AAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAA-TGGCCGATGTGATGAATGTG--AGTGTATATATATGTGATAAG
23261976 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 20, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.01
47 204 0.58
48 1 0.00
49 145 0.41
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCC
Found at i:23261719 original size:96 final size:94
Alignment explanation
Indices: 23261550--23261975 Score: 692
Period size: 96 Copynumber: 4.5 Consensus size: 94
23261540 TAGTATGGCG
* ** *
23261550 TAATAGCCGATGTGATGAATGTGAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23261615 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
23261646 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
23261711 ATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
23261740 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
23261805 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTG--TATATATGTGATAAGGCC
23261838 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
23261903 ATGTGAAAGTGTATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
23261932 -AAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAA-TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
23261976 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
93 2 0.01
94 100 0.32
96 166 0.53
98 47 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:23263416 original size:40 final size:40
Alignment explanation
Indices: 23263358--23263780 Score: 618
Period size: 40 Copynumber: 10.6 Consensus size: 40
23263348 GAGTGAAATG
*
23263358 TCCGGGCTAA-ATCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTA
*
23263398 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23263438 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
23263478 TCCGGGCTAAGTTCCGAAGAGCATTCATGCCAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
23263518 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23263558 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23263598 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
23263638 TCCGGGCTAAG-TCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTA
* *
23263678 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *** * * * *
23263718 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
23263758 TCCGGGCT-AGGTCTCGAAGAGCA
1 TCCGGGCTAAGTTC-CGAAGAGCA
23263781 ATCATGCTGG
Statistics
Matches: 356, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.01
40 349 0.98
41 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:23267613 original size:51 final size:49
Alignment explanation
Indices: 23267459--23267794 Score: 517
Period size: 47 Copynumber: 6.9 Consensus size: 49
23267449 TAGTATGGCG
*
23267459 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
23267508 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
23267555 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCC
23267606 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
23267653 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCC
* *
23267704 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
23267751 GAGTGGCCAATGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
23267795 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 9, Indels: 22
0.90 0.03 0.07
Matches are distributed among these distances:
47 143 0.53
48 1 0.00
49 30 0.11
51 94 0.35
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:23267631 original size:98 final size:98
Alignment explanation
Indices: 23267459--23267783 Score: 573
Period size: 98 Copynumber: 3.3 Consensus size: 98
23267449 TAGTATGGCG
*
23267459 TAATAGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
23267522 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
23267555 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
23267620 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
23267653 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
23267718 ATGAATGTGAAAGTGTATATATGTGACAGGGCC
66 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
23267751 GAGTGGCCAATGTGATGGATGTGAAAGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATA
23267784 AATGTGATAA
Statistics
Matches: 220, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 28 0.13
98 192 0.87
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (98 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:23271459 original size:21 final size:19
Alignment explanation
Indices: 23271382--23271465 Score: 55
Period size: 21 Copynumber: 4.3 Consensus size: 19
23271372 TTTCATGTCA
23271382 TTATTAAGCTAACATAAAAAT
1 TTATTAA-CT-ACATAAAAAT
* * *
23271403 TTATTGAAATA-ATCAAACT
1 TTATT-AACTACATAAAAAT
* *
23271422 TTATTCA-TACTTAAAAAT
1 TTATTAACTACATAAAAAT
*
23271440 TTATTAAGCTAACATAAAAAA
1 TTATTAA-CT-ACATAAAAAT
23271461 TTATT
1 TTATT
23271466 GAAATAATCA
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
17 2 0.04
18 12 0.25
19 11 0.23
20 2 0.04
21 19 0.40
22 2 0.04
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.38
Consensus pattern (19 bp):
TTATTAACTACATAAAAAT
Found at i:23271472 original size:58 final size:58
Alignment explanation
Indices: 23271382--23271494 Score: 217
Period size: 58 Copynumber: 1.9 Consensus size: 58
23271372 TTTCATGTCA
*
23271382 TTATTAAGCTAACATAAAAATTTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
1 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
23271440 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAA
1 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAA
23271495 TTTAGTATAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (58 bp):
TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
Found at i:23281799 original size:40 final size:40
Alignment explanation
Indices: 23281744--23281823 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
23281734 TTAGAATAAG
23281744 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
1 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
*
23281784 TGTACCATTCGAATTTCAACATTAGTGACACTTCTCCTCT
1 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
23281824 ACCGTTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (40 bp):
TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
Found at i:23284632 original size:94 final size:94
Alignment explanation
Indices: 23284451--23284621 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 94
23284441 TTATTACCCA
23284451 AAAAATATGAAAGTAACAAAAAAATAAAAAAAAACTATGTTAAAAACTCTATTTTTCTCGAGAAA
1 AAAAATATGAAAGTAACAAAAAAATAAAAAAAAACTATGTTAAAAACTCTATTTTTCTCGAGAAA
23284516 AAGATCATTAAGTAACAAAAAAATATGTT
66 AAGATCATTAAGTAACAAAAAAATATGTT
*
23284545 AAAAATATGAAAGTAACAAAAAAA-CAAAAAAAACTATGTTAAAAACTCTATTTTTCTCGAGAAA
1 AAAAATATGAAAGTAACAAAAAAATAAAAAAAAACTATGTTAAAAACTCTATTTTTCTCGAGAAA
*
23284609 AAGCTCATTAAGT
66 AAGATCATTAAGT
23284622 GCATCGAAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
93 51 0.68
94 24 0.32
ACGTcount: A:0.56, C:0.10, G:0.09, T:0.25
Consensus pattern (94 bp):
AAAAATATGAAAGTAACAAAAAAATAAAAAAAAACTATGTTAAAAACTCTATTTTTCTCGAGAAA
AAGATCATTAAGTAACAAAAAAATATGTT
Found at i:23287713 original size:15 final size:15
Alignment explanation
Indices: 23287693--23287725 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
23287683 TAGCTAGTTA
23287693 AATTATGCAAAATTT
1 AATTATGCAAAATTT
23287708 AATTATGCAAAATTT
1 AATTATGCAAAATTT
23287723 AAT
1 AAT
23287726 GCATAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTATGCAAAATTT
Found at i:23294922 original size:61 final size:61
Alignment explanation
Indices: 23294827--23294944 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
23294817 ACATTAATAA
* *
23294827 TAAATTAATAAAATATTATATAGATAAATATTAAATTTAATTCCATATCTCATATTAGTAT
1 TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTAGTAT
* *
23294888 TAAATTAATAAAATACTATCTAGATAAATATTAAATTTAATTTAATATCTCATATTA
1 TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTA
23294945 ATATCTAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (61 bp):
TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTAGTAT
Found at i:23294928 original size:32 final size:30
Alignment explanation
Indices: 23294822--23294924 Score: 91
Period size: 31 Copynumber: 3.4 Consensus size: 30
23294812 TAATCACATT
* *
23294822 AATAATAAATTAATAAAATATTATATAGATA
1 AATATTAAATTAATAAAATA-TATCTAGATA
*** * * *
23294853 AATATTAAATTTAATTCCATATCTC-ATATT
1 AATATTAAA-TTAATAAAATATATCTAGATA
*
23294883 AGTATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATA-TATCTAGATA
23294914 AATATTAAATT
1 AATATTAAATT
23294925 TAATTTAATA
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 8 0.15
30 14 0.26
31 23 0.43
32 8 0.15
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATATCTAGATA
Found at i:23296561 original size:23 final size:23
Alignment explanation
Indices: 23296533--23296584 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
23296523 AAATTAACTT
23296533 AATAAATAATGTTTATTTTGAGA
1 AATAAATAATGTTTATTTTGAGA
23296556 AATAAATAATGTTTATTTTGAGA
1 AATAAATAATGTTTATTTTGAGA
23296579 AATAAA
1 AATAAA
23296585 AAAACATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (23 bp):
AATAAATAATGTTTATTTTGAGA
Found at i:23307740 original size:8 final size:8
Alignment explanation
Indices: 23307727--23307753 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
23307717 TTAATGCTTA
23307727 AAAATATT
1 AAAATATT
23307735 AAAATATT
1 AAAATATT
23307743 AAAATATT
1 AAAATATT
23307751 AAA
1 AAA
23307754 TTTTAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:23309431 original size:32 final size:31
Alignment explanation
Indices: 23309379--23309449 Score: 97
Period size: 32 Copynumber: 2.3 Consensus size: 31
23309369 AAATTACTCT
* * * *
23309379 TCCCCTAACTTATTATAAGTTGTTATTTTTC
1 TCCCCTAACTCATTACAAGTTATTATTTCTC
23309410 TCCCTCTAACTCATTACAAGTTATTATTTCTC
1 TCCC-CTAACTCATTACAAGTTATTATTTCTC
23309442 TCCCCTAA
1 TCCCCTAA
23309450 TGTCGAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 8 0.23
32 27 0.77
ACGTcount: A:0.24, C:0.27, G:0.04, T:0.45
Consensus pattern (31 bp):
TCCCCTAACTCATTACAAGTTATTATTTCTC
Found at i:23314153 original size:40 final size:41
Alignment explanation
Indices: 23314069--23314153 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 41
23314059 AATTATAGAA
* * * * *
23314069 TACTGAATATTATTTTTGAGTACTGAATTGAATTGTGAAGT
1 TACTGAATATTAGTTATGAGTACTGAATTGAACTGTAAAAT
* *
23314110 TACTGAATATT-GTTATGTGTACTGCATTGAACTGTAAAAT
1 TACTGAATATTAGTTATGAGTACTGAATTGAACTGTAAAAT
23314150 TACT
1 TACT
23314154 AAAGTAATGA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 26 0.70
41 11 0.30
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (41 bp):
TACTGAATATTAGTTATGAGTACTGAATTGAACTGTAAAAT
Found at i:23314428 original size:45 final size:45
Alignment explanation
Indices: 23314360--23314460 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
23314350 GCCAACTACT
* *
23314360 GTTACTGTTACCGAATTGACACTTTGTGTGTTGAATACTGTTACC
1 GTTACTGTTACAGAATTCACACTTTGTGTGTTGAATACTGTTACC
* *
23314405 GTTACTGTTACAG-ATTCAGCACTTTGTGTGTTGAATATTGTTACT
1 GTTACTGTTACAGAATTCA-CACTTTGTGTGTTGAATACTGTTACC
23314450 GTTACTGTTAC
1 GTTACTGTTAC
23314461 TGCTATCGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 4 0.08
45 47 0.92
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (45 bp):
GTTACTGTTACAGAATTCACACTTTGTGTGTTGAATACTGTTACC
Found at i:23319008 original size:23 final size:22
Alignment explanation
Indices: 23318962--23319021 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
23318952 ATAAAAATAA
* *
23318962 ATAAATTATAATTATTTAATTT
1 ATAAATTATATTTATTAAATTT
23318984 ATGAAATTATATTTA-TAAATATT
1 AT-AAATTATATTTATTAAAT-TT
23319007 ATATAATTATATTTA
1 ATA-AATTATATTTA
23319022 AATTTATTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 7 0.21
23 26 0.79
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATAAATTATATTTATTAAATTT
Found at i:23321681 original size:17 final size:17
Alignment explanation
Indices: 23321633--23321671 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
23321623 GAAAGAAGAT
* *
23321633 ATTTCGTTTAAGTTTTA
1 ATTTTGTTTAATTTTTA
23321650 ATTTTGTTTAATTTTTA
1 ATTTTGTTTAATTTTTA
23321667 ATTTT
1 ATTTT
23321672 TTATGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.03, G:0.08, T:0.67
Consensus pattern (17 bp):
ATTTTGTTTAATTTTTA
Found at i:23323050 original size:140 final size:140
Alignment explanation
Indices: 23322840--23323267 Score: 667
Period size: 140 Copynumber: 3.1 Consensus size: 140
23322830 ATCATAAGAT
** * * * * *
23322840 GACACTTTTGGGGTGACACTTTCCTAAGTGTTGGGATAAACTTGCCAACATATGCTTTGGTCAAG
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAAC
** * *
23322905 TCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATATTAGTTGGCTTTGTTTG
66 TCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTA
23322970 ACACTATGCC
131 ACACTATGCC
* * *
23322980 GATACTTTTGGGCCGACACTTTCCTAAGTGTTGGTATAGATTTGCCGACATACGCTTTGGCCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAAC
* *
23323045 CCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCTA
66 TCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTA
*
23323110 ACACTATGCT
131 ACACTATGCC
*
23323120 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACGCTTTGGCCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAAC
* *
23323185 TCTTTGTATAAGGGTTGGGATATGCATGCCTAGGGCAACGCTTAAATAAGAGTTGGCTTTGTCCA
66 TCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTA
*
23323250 ACACTATGCT
131 ACACTATGCC
23323260 GACACTTT
1 GACACTTT
23323268 CCTAAGTGTT
Statistics
Matches: 263, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
140 263 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (140 bp):
GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAAC
TCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTA
ACACTATGCC
Found at i:23327350 original size:13 final size:13
Alignment explanation
Indices: 23327325--23327364 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 13
23327315 ATTATATATT
23327325 TTTAATAAATTATA
1 TTTAAT-AATTATA
23327339 TTTAATAATTAT-
1 TTTAATAATTATA
23327351 TTT-A-AATTATA
1 TTTAATAATTATA
23327362 TTT
1 TTT
23327365 TATAGTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 3 0.12
13 6 0.24
14 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTAATAATTATA
Found at i:23327478 original size:16 final size:17
Alignment explanation
Indices: 23327429--23327475 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
23327419 AGAATTTTAT
**
23327429 TAAATTATATATTTTTAA
1 TAAATTATAT-TTAATAA
23327447 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
23327464 T-AATTAT-TTTAA
1 TAAATTATATTTAA
23327476 ATATATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
17 6 0.22
18 10 0.37
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:23327528 original size:119 final size:120
Alignment explanation
Indices: 23327193--23327595 Score: 708
Period size: 117 Copynumber: 3.4 Consensus size: 120
23327183 AAAGTGGGGG
* *
23327193 AAATTATATATTTTTATTAAATTATATCTAATAATAATTATTTTAAATTATATTTTATAGTATTA
1 AAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTA
23327258 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
66 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
23327313 AAATTATATATTTTTAATAAATTATA-TT--TAATAATTATTTTAAATTATATTTTATAGTATTA
1 AAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTA
23327375 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
66 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
*
23327430 AAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAA-TATATTTTATATTATTA
1 AAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTA
23327494 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
66 TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
* * *
23327549 AAATTATATA-TTTTAATTAAAATATATTTACTAATAATTATGTTAAA
1 AAATTATATATTTTTAA-TAAATTATATTTAATAATAATTATTTTAAA
23327596 ATATCATTAA
Statistics
Matches: 273, Mismatches: 6, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
117 115 0.42
118 8 0.03
119 109 0.40
120 41 0.15
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
AAATTATATATTTTTAATAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTA
TATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
Found at i:23327567 original size:18 final size:17
Alignment explanation
Indices: 23327541--23327575 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23327531 AATATTAAGA
*
23327541 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23327558 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23327576 TTACTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23327825 original size:45 final size:44
Alignment explanation
Indices: 23327732--23327829 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 44
23327722 CTATTACACC
*
23327732 TCCATTTCATTCAACCAAACACAAGAATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
*
23327776 TCCATTACATTCAACCAAACA-ATTA-AATTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACA--AGAA-TACTATTACGCCTCTAT
23327821 TCCATTACA
1 TCCATTACA
23327830 CCTCTATTAC
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
43 1 0.02
44 22 0.45
45 26 0.53
ACGTcount: A:0.36, C:0.29, G:0.04, T:0.32
Consensus pattern (44 bp):
TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
Found at i:23328965 original size:125 final size:123
Alignment explanation
Indices: 23328631--23328974 Score: 598
Period size: 123 Copynumber: 2.8 Consensus size: 123
23328621 CGAGTTGATG
*
23328631 TTTCTGAGCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
23328696 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
* *
23328754 TTTCTGACAAAATAGTATAAAATCACTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
*
23328819 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATGTAAGAAATAATTTTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAA--TTTTTTTGACT
* *
23328879 TTTCTGACCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATGTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* *
23328944 CGGCCTCGTGGGCGCGCTTTTGCTACAGTAG
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAG
23328975 CATGTTTGGG
Statistics
Matches: 209, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
123 108 0.52
125 101 0.48
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (123 bp):
TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
Found at i:23329366 original size:19 final size:18
Alignment explanation
Indices: 23329342--23329485 Score: 113
Period size: 19 Copynumber: 7.7 Consensus size: 18
23329332 TCAAATTATA
*
23329342 TAAAATTATATATGGTTAG
1 TAAAATTATAAAT-GTTAG
23329361 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
23329379 TAAAATTATTAAA-GTTTAG
1 TAAAATTA-TAAATG-TTAG
23329398 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
*
23329416 TAAAATTATTAAAGGTTAG
1 TAAAATTA-TAAATGTTAG
23329435 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
23329453 TAAAATTATAAATGGTTAG
1 TAAAATTATAAAT-GTTAG
23329472 TAAAATTATTAAAT
1 TAAAATTA-TAAAT
23329486 TATATAAAAT
Statistics
Matches: 104, Mismatches: 3, Indels: 35
0.73 0.02 0.25
Matches are distributed among these distances:
17 4 0.04
18 42 0.40
19 50 0.48
20 8 0.08
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (18 bp):
TAAAATTATAAATGTTAG
Found at i:23329374 original size:37 final size:37
Alignment explanation
Indices: 23329332--23329496 Score: 271
Period size: 37 Copynumber: 4.5 Consensus size: 37
23329322 TTGTATTAAC
*
23329332 TCAAATTATATAAAATTA-TATATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTA-AAGGTTAGTAAAATTA
*
23329369 TCAAATTATATAAAATTATTAAAGTTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
23329406 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
23329443 TCAAATTATATAAAATTA-TAAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAA-GGTTAGTAAAATTA
*
23329480 TTAAATTATATAAAATT
1 TCAAATTATATAAAATT
23329497 GGGTTAGGGT
Statistics
Matches: 122, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.03
37 116 0.95
38 2 0.02
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (37 bp):
TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
Found at i:23329488 original size:27 final size:25
Alignment explanation
Indices: 23329363--23329464 Score: 55
Period size: 27 Copynumber: 3.8 Consensus size: 25
23329353 ATGGTTAGTA
23329363 AAATTATCAAAT-TATATAAAATTATT
1 AAATTAT-AAATAT-TATAAAATTATT
*
23329389 AAAGTTTAGTAAA-ATTATCAAATTATAT
1 AAA--TTA-TAAATATTATAAAATTAT-T
** *
23329417 AAAATTATTAAAGGTTAGTAAAATTATC
1 -AAATTA-TAAATATTA-TAAAATTATT
*
23329445 AAATTATATAAAATTATAAA
1 AAATTATA-AATATTATAAA
23329465 TGGTTAGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
26 9 0.15
27 28 0.47
28 11 0.18
29 12 0.20
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (25 bp):
AAATTATAAATATTATAAAATTATT
Found at i:23329532 original size:29 final size:28
Alignment explanation
Indices: 23329493--23330041 Score: 658
Period size: 29 Copynumber: 19.4 Consensus size: 28
23329483 AATTATATAA
23329493 AATTGGGTTAGGGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
* *
23329521 AAGTTTGGTTAGGGTTAAGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
23329550 GAATTGGGTTAGGGTTAGGG-TTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
23329578 AAGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
23329607 AAGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
23329636 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
23329665 AAGTTTGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
23329694 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
23329723 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
23329752 AA----GTTA-GGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
23329775 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
23329804 AA----ATTA-GGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
* * *
23329827 AAGTTAGGTTAGGGTAAAGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
23329856 GAATTGGGTTAGGGTTAGGGTTAAGGTTT--TT
1 -AATTGGGTTAGGGTTAGGGTT----TTTAATT
***
23329887 AATTAAATT-GGGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
23329914 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
23329943 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
* * *
23329972 AAGTTAGGTTAGTGTTAGGGCTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
* *
23330001 GAATTGAGTTAGGGTTAGAGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
23330030 AAATTGGGTTAG
1 -AATTGGGTTAG
23330042 TGTAACAGCC
Statistics
Matches: 457, Mismatches: 34, Indels: 59
0.83 0.06 0.11
Matches are distributed among these distances:
23 36 0.08
24 9 0.02
25 3 0.01
27 4 0.01
28 47 0.10
29 337 0.74
30 16 0.04
31 2 0.00
33 3 0.01
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (28 bp):
AATTGGGTTAGGGTTAGGGTTTTTAATT
Found at i:23329848 original size:35 final size:32
Alignment explanation
Indices: 23329809--23329905 Score: 94
Period size: 35 Copynumber: 3.0 Consensus size: 32
23329799 TAATTAAATT
*
23329809 AGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTA
1 AGGTTA-GGTTTTTAATTAA-TTGGGTTAGGGTA
23329843 A----AGGTTTTTAATTGAATTGGGTTAGGGTTA
1 AGGTTAGGTTTTTAATT-AATTGGGTTAGGG-TA
*
23329873 GGGTTAAGGTTTTTAATTAAATTGGGTTAGGGT
1 AGGTT-AGGTTTTTAATT-AATTGGGTTAGGGT
23329906 TTTTAATTGA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
29 21 0.40
30 5 0.09
34 2 0.04
35 25 0.47
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (32 bp):
AGGTTAGGTTTTTAATTAATTGGGTTAGGGTA
Found at i:23329899 original size:23 final size:23
Alignment explanation
Indices: 23329873--23329958 Score: 91
Period size: 23 Copynumber: 3.5 Consensus size: 23
23329863 GTTAGGGTTA
23329873 GGGTTAAGGTTTTTAATTAAATT
1 GGGTTAAGGTTTTTAATTAAATT
* *
23329896 GGGTTAGGGTTTTTAATTGAATT
1 GGGTTAAGGTTTTTAATTAAATT
23329919 GGGTTAGGGTTAGGGTTTTTAATTAAATT
1 GGGTTA-----A-GGTTTTTAATTAAATT
*
23329948 GGGTTAGGGTT
1 GGGTTAAGGTT
23329959 AGGGTTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
23 31 0.60
29 21 0.40
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.45
Consensus pattern (23 bp):
GGGTTAAGGTTTTTAATTAAATT
Found at i:23329906 original size:35 final size:35
Alignment explanation
Indices: 23329829--23329906 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
23329819 TTTTAATTAA
*
23329829 GTTA-GGTTAGGGTAAAGGTTTTTAATTGAATTGG
1 GTTAGGGTTAGGGTAAAGGTTTTTAATTAAATTGG
*
23329863 GTTAGGGTTAGGGTTAAGGTTTTTAATTAAATTGG
1 GTTAGGGTTAGGGTAAAGGTTTTTAATTAAATTGG
23329898 GTTAGGGTT
1 GTTAGGGTT
23329907 TTTAATTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 4 0.10
35 37 0.90
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.42
Consensus pattern (35 bp):
GTTAGGGTTAGGGTAAAGGTTTTTAATTAAATTGG
Found at i:23331830 original size:28 final size:28
Alignment explanation
Indices: 23331790--23331943 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
23331780 TAAATTGTAC
23331790 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23331818 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23331846 AACACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23331874 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
23331902 AGCGCTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23331929 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23331944 GACTTAATAT
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
27 23 0.19
28 95 0.81
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:23333518 original size:29 final size:29
Alignment explanation
Indices: 23333485--23333753 Score: 400
Period size: 29 Copynumber: 9.3 Consensus size: 29
23333475 TGTTACAGTC
23333485 AGGGTTAGGGTTTTTAATTGAATTGGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
* *
23333514 AGGGTTAGAGTTTTTAATTAAATTGGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
*
23333543 AGGGTTAGGGTTTTTAATT-AAGTTAGGTT
1 AGGGTTAGGGTTTTTAATTGAA-TTGGGTT
23333572 AGGGTTAGGG-TTTTAATTGAATTGGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
* * *
23333600 AGAGTTAGGGTTTTTAATTAAATTTGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
23333629 AGGGTTAGGGTTTTTAATTGAATTGGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
* *
23333658 ACGGTTAGGGTTTTTAATT-AAGTTAGGTT
1 AGGGTTAGGGTTTTTAATTGAA-TTGGGTT
* *
23333687 AGGGTTAGGGTTTGTAATTGAATTAGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
*
23333716 AGGGTTAGGGTTTTTAATTAAATTGGGTT
1 AGGGTTAGGGTTTTTAATTGAATTGGGTT
23333745 AGGGTTAGG
1 AGGGTTAGG
23333754 AATAAACTTC
Statistics
Matches: 217, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
28 27 0.12
29 188 0.87
30 2 0.01
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (29 bp):
AGGGTTAGGGTTTTTAATTGAATTGGGTT
Found at i:23333633 original size:115 final size:116
Alignment explanation
Indices: 23333488--23333752 Score: 460
Period size: 115 Copynumber: 2.3 Consensus size: 116
23333478 TACAGTCAGG
* *
23333488 GTTAGGGTTTTTAATTGAATTGGGTTAGGGTTAGAGTTTTTAATTAAATTGGGTTAGGGTTAGGG
1 GTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAGAGTTTTTAATTAAATTGGGTTACGGTTAGGG
*
23333553 TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTT-TAATTGAATTGGGTTAGA
66 TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTGTAATTGAATTAGGTTAGA
* * *
23333603 GTTAGGGTTTTTAATTAAATTTGGTTAGGGTTAGGGTTTTTAATTGAATTGGGTTACGGTTAGGG
1 GTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAGAGTTTTTAATTAAATTGGGTTACGGTTAGGG
*
23333668 TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTGTAATTGAATTAGGTTAGG
66 TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTGTAATTGAATTAGGTTAGA
23333719 GTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAG
1 GTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAG
23333753 GAATAAACTT
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
115 92 0.65
116 49 0.35
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (116 bp):
GTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAGAGTTTTTAATTAAATTGGGTTACGGTTAGGG
TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTGTAATTGAATTAGGTTAGA
Found at i:23333994 original size:21 final size:21
Alignment explanation
Indices: 23333952--23333998 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
23333942 TTTTCTCTAG
* *
23333952 CTTCCGGCGGCGGTTGTTGTT
1 CTTCCGGCGGCGGTTCTGGTT
23333973 CTTCCGGCGG-GGATTCTGGTT
1 CTTCCGGCGGCGG-TTCTGGTT
23333994 CTTCC
1 CTTCC
23333999 AGTACAGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.02, C:0.28, G:0.34, T:0.36
Consensus pattern (21 bp):
CTTCCGGCGGCGGTTCTGGTT
Found at i:23334958 original size:7 final size:7
Alignment explanation
Indices: 23334946--23334971 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23334936 TATACATAAT
23334946 AATACTA
1 AATACTA
23334953 AATACTA
1 AATACTA
23334960 AATACTA
1 AATACTA
23334967 AATAC
1 AATAC
23334972 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:23336178 original size:22 final size:22
Alignment explanation
Indices: 23336147--23336293 Score: 109
Period size: 22 Copynumber: 6.4 Consensus size: 22
23336137 AAATATGGAT
23336147 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* *
23336169 TTAAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* * * *
23336191 TTGAGAGGAAATTGAAATTAAATATGGAT
1 TTGAGA-G-AATT----TTAGA-AGGAAA
23336220 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* * *
23336242 TTAAGAGAATTTTGGAAAGAAA
1 TTGAGAGAATTTTAGAAGGAAA
*
23336264 TTGAGAGGAA-TTGAG-AGGAAA
1 TTGAGA-GAATTTTAGAAGGAAA
23336285 TATGAGAGA
1 T-TGAGAGA
23336294 GGATTTGTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
21 8 0.08
22 60 0.62
23 8 0.08
24 4 0.04
27 4 0.04
28 4 0.04
29 9 0.09
ACGTcount: A:0.46, C:0.00, G:0.28, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTAGAAGGAAA
Found at i:23336188 original size:73 final size:73
Alignment explanation
Indices: 23336111--23336277 Score: 309
Period size: 73 Copynumber: 2.3 Consensus size: 73
23336101 TATTTTAAAA
23336111 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
23336176 AATTTTGG
66 AATTTTGG
*
23336184 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
23336249 AATTTTGG
66 AATTTTGG
*
23336257 AAAGAAATTGAGAGG-AATTGA
1 AAGGAAATTGAGAGGAAATTGA
23336278 GAGGAAATAT
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
72 6 0.07
73 86 0.93
ACGTcount: A:0.46, C:0.01, G:0.26, T:0.27
Consensus pattern (73 bp):
AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
AATTTTGG
Found at i:23336292 original size:12 final size:11
Alignment explanation
Indices: 23336260--23336292 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
23336250 ATTTTGGAAA
23336260 GAAATTGAGAG
1 GAAATTGAGAG
23336271 G-AATTGAGAG
1 GAAATTGAGAG
23336281 GAAATATGAGAG
1 GAAAT-TGAGAG
23336293 AGGATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:23338152 original size:13 final size:12
Alignment explanation
Indices: 23338132--23338163 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
23338122 TCACCAACTT
23338132 ATATGTTAGTCC
1 ATATGTTAGTCC
23338144 ATGATGTTAGTCC
1 AT-ATGTTAGTCC
23338157 ATATGTT
1 ATATGTT
23338164 CAAAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (12 bp):
ATATGTTAGTCC
Found at i:23339479 original size:72 final size:72
Alignment explanation
Indices: 23339361--23339573 Score: 205
Period size: 72 Copynumber: 2.9 Consensus size: 72
23339351 TAGACGTGTC
* * * ** * **
23339361 TATTCCAACCTTTTAAAGGTTGTCTTAGACGGGTCTATCCTAACCTTTTTAAATGTTGTTTTAGA
1 TATTCCAACCTTTTTAGGGTTGTATTAGACGACTCTATCCTAACCTTTTTAAAGGTTACTTTAGA
*
23339426 TAAGGTA
66 CAAGGTA
* * * *
23339433 TATTCCAACCTTTTTAGGGTTGTATTAGATGACTCTATCTTGACCTTTTTAAAGGTTACTTTCGA
1 TATTCCAACCTTTTTAGGGTTGTATTAGACGACTCTATCCTAACCTTTTTAAAGGTTACTTTAGA
*
23339498 CAAGGTC
66 CAAGGTA
* * ** * *
23339505 TATCCCAACTTTTTTAGGGTTGCT-TTAGACGGGTCTATTCC-AACCTTTTTTAAGGGTTACCTT
1 TATTCCAACCTTTTTAGGGTTG-TATTAGACGACTCTA-TCCTAACC-TTTTTAAAGGTTACTTT
23339568 AGACAA
63 AGACAA
23339574 TGTCTAGCCT
Statistics
Matches: 114, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
72 91 0.80
73 23 0.20
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (72 bp):
TATTCCAACCTTTTTAGGGTTGTATTAGACGACTCTATCCTAACCTTTTTAAAGGTTACTTTAGA
CAAGGTA
Found at i:23339519 original size:37 final size:38
Alignment explanation
Indices: 23339478--23339579 Score: 120
Period size: 36 Copynumber: 2.8 Consensus size: 38
23339468 TATCTTGACC
* *
23339478 TTTTTAAAGGTTACTTTCGACAAGGTCTATCCCAA-CT
1 TTTTTAAGGGTTACTTTAGACAAGGTCTATCCCAACCT
* * *
23339515 TTTTT-AGGGTTGCTTTAGAC-GGGTCTATTCCAACCT
1 TTTTTAAGGGTTACTTTAGACAAGGTCTATCCCAACCT
* *
23339551 TTTTTAAGGGTTACCTTAGACAATGTCTA
1 TTTTTAAGGGTTACTTTAGACAAGGTCTA
23339580 GCCTAATCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
35 11 0.21
36 19 0.36
37 18 0.34
38 5 0.09
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.40
Consensus pattern (38 bp):
TTTTTAAGGGTTACTTTAGACAAGGTCTATCCCAACCT
Found at i:23339554 original size:35 final size:34
Alignment explanation
Indices: 23339350--23339559 Score: 136
Period size: 36 Copynumber: 5.9 Consensus size: 34
23339340 AAAAATTACC
* *
23339350 TTAGACGTGTCTATTCCAACCTTTTAAAGGTTGT
1 TTAGACGGGTCTATTCCAACCTTTTTAAGGTTGT
*
23339384 CTTAGACGGGTCTA-TCCTAACCTTTTTAAATGTTGTT
1 -TTAGACGGGTCTATTCC-AACCTTTTT-AAGGTTG-T
** * *
23339421 TTAGATAAGGTATATTCCAACCTTTTTAGGGTTGT
1 TTAGA-CGGGTCTATTCCAACCTTTTTAAGGTTGT
* ** ** *
23339456 ATTAGATGACTCTA-TCTTGACCTTTTTAAAGGTTACT
1 -TTAGACGGGTCTATTC-CAACCTTTTT-AAGGTT-GT
* * * * *
23339493 TTCGACAAGGTCTATCCCAACTTTTTTAGGGTTGCT
1 TTAGAC-GGGTCTATTCCAACCTTTTTAAGGTTG-T
23339529 TTAGACGGGTCTATTCCAACCTTTTTTAAGG
1 TTAGACGGGTCTATTCCAACC-TTTTTAAGG
23339560 GTTACCTTAG
Statistics
Matches: 129, Mismatches: 33, Indels: 25
0.69 0.18 0.13
Matches are distributed among these distances:
34 5 0.04
35 44 0.34
36 49 0.38
37 27 0.21
38 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (34 bp):
TTAGACGGGTCTATTCCAACCTTTTTAAGGTTGT
Found at i:23341057 original size:47 final size:47
Alignment explanation
Indices: 23341003--23341097 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
23340993 TTTTTATTTT
23341003 TTATAGATGACAATCTTAGTTCTGGAGAAGTGTCATCAATGGAAATC
1 TTATAGATGACAATCTTAGTTCTGGAGAAGTGTCATCAATGGAAATC
* * * * * **
23341050 TTATAGATGGCAGTCTTATTTTTGGAGAAGTGTCGTCGGTGGAAATC
1 TTATAGATGACAATCTTAGTTCTGGAGAAGTGTCATCAATGGAAATC
23341097 T
1 T
23341098 CAAGTTGCGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (47 bp):
TTATAGATGACAATCTTAGTTCTGGAGAAGTGTCATCAATGGAAATC
Found at i:23345730 original size:19 final size:18
Alignment explanation
Indices: 23345703--23345745 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
23345693 AAAATTACAA
*
23345703 AAAAATCAAAATAATTTTT
1 AAAAATCAAAAT-ATTTAT
*
23345722 AAAATTCAAAATATTTAT
1 AAAAATCAAAATATTTAT
23345740 AAAAAT
1 AAAAAT
23345746 TTTAAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATCAAAATATTTAT
Found at i:23345792 original size:7 final size:7
Alignment explanation
Indices: 23345780--23345808 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
23345770 TATAAAGAAG
23345780 ATTTAAA
1 ATTTAAA
23345787 ATTTAAA
1 ATTTAAA
23345794 ATTTAAA
1 ATTTAAA
23345801 ATTTAAA
1 ATTTAAA
23345808 A
1 A
23345809 ATATTCCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTTAAA
Found at i:23349225 original size:4 final size:4
Alignment explanation
Indices: 23349216--23349311 Score: 183
Period size: 4 Copynumber: 24.0 Consensus size: 4
23349206 TTCAAAACAC
*
23349216 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATG CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
23349264 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
23349312 AAAAAACTAA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 90 1.00
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:23350123 original size:21 final size:21
Alignment explanation
Indices: 23350094--23350134 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23350084 AAAATGCTAA
23350094 GTTTAGGATTCAAGATTTAGT
1 GTTTAGGATTCAAGATTTAGT
* * *
23350115 GTTTGGGATTTAAGGTTTAG
1 GTTTAGGATTCAAGATTTAG
23350135 GGTTCAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.44
Consensus pattern (21 bp):
GTTTAGGATTCAAGATTTAGT
Found at i:23353468 original size:9 final size:9
Alignment explanation
Indices: 23353454--23353490 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
23353444 TATAGTTTGA
23353454 TATTCGAAT
1 TATTCGAAT
23353463 TATTCGAAT
1 TATTCGAAT
*
23353472 TATTCGAGT
1 TATTCGAAT
23353481 TATTCGAAT
1 TATTCGAAT
23353490 T
1 T
23353491 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:23354300 original size:22 final size:22
Alignment explanation
Indices: 23354275--23354334 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
23354265 AAGAGCGAAC
23354275 TATAGGGACAAAAAAATAGAAT
1 TATAGGGACAAAAAAATAGAAT
* *
23354297 TATAGGGACCAAAAATTAGAAT
1 TATAGGGACAAAAAAATAGAAT
* *
23354319 TACATGGACAAAAAAA
1 TATAGGGACAAAAAAA
23354335 GACTAAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.57, C:0.08, G:0.17, T:0.18
Consensus pattern (22 bp):
TATAGGGACAAAAAAATAGAAT
Found at i:23355641 original size:146 final size:142
Alignment explanation
Indices: 23355452--23355727 Score: 323
Period size: 146 Copynumber: 1.9 Consensus size: 142
23355442 TTTTTAATTA
*
23355452 AATAGATTATAGTAATTTTTCAAATAATAATTAAACAAATAAATATTTT-ACATATTAGATATAT
1 AATAGATTATAGTAATTTTTCAAATAATAATTAAACAAATAAATATTTTGAC-TAGT--ATATAT
* * *
23355516 ATTTAA-AATAGGGTTATAATATTAAA-AAATTAAAGCAATGA-CTTTTAAACTATTTATCAAAT
63 ATTTAATAA-AGAGTTATAATATTAAAGAAA--AAACCAATGATC-TTTAAA-T-TGTATCAAAT
23355578 TT-AATTTTCAATCTAATTTT
122 TTAAATTTTCAATCTAATTTT
* * ** *
23355598 AATATATTATGGTAATCTTTT-AAATAATTAA-TAAATTAATAAATATTTTGACTAGTATATATT
1 AATAGATTATAGTAAT-TTTTCAAATAA-TAATTAAACAAATAAATATTTTGACTAGTATATATA
23355661 TTTAATAAAGAGTTATAATATTAAAGAAAAAACCAATGATCTTTAAATTGTATCAAATTTAAATT
64 TTTAATAAAGAGTTATAATATTAAAGAAAAAACCAATGATCTTTAAATTGTATCAAATTTAAATT
23355726 TT
129 TT
23355728 GATCTCATTT
Statistics
Matches: 114, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
141 11 0.10
142 7 0.06
143 15 0.13
144 28 0.25
145 5 0.04
146 39 0.34
147 9 0.08
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (142 bp):
AATAGATTATAGTAATTTTTCAAATAATAATTAAACAAATAAATATTTTGACTAGTATATATATT
TAATAAAGAGTTATAATATTAAAGAAAAAACCAATGATCTTTAAATTGTATCAAATTTAAATTTT
CAATCTAATTTT
Found at i:23357390 original size:4 final size:4
Alignment explanation
Indices: 23357381--23357405 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
23357371 TAATAAGGAA
23357381 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
23357406 TAGAGGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:23360251 original size:12 final size:12
Alignment explanation
Indices: 23360234--23360265 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
23360224 GCATGAATTA
23360234 AATTAATTATAG
1 AATTAATTATAG
23360246 AATTAATTATAG
1 AATTAATTATAG
23360258 AATTAATT
1 AATTAATT
23360266 TAATTGGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (12 bp):
AATTAATTATAG
Found at i:23362231 original size:3 final size:3
Alignment explanation
Indices: 23362223--23362249 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23362213 AAGCATAAAC
23362223 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
23362250 CATTGGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23362388 original size:3 final size:3
Alignment explanation
Indices: 23362374--23362424 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
23362364 ACACTAGTAC
* * * * *
23362374 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23362421 ATA A
1 ATA A
23362425 GGATATTTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23364598 original size:133 final size:134
Alignment explanation
Indices: 23363973--23364774 Score: 1362
Period size: 134 Copynumber: 6.0 Consensus size: 134
23363963 CCTCTGCTGC
* * * ** * *
23363973 CAGGGAGATAGAATTACCGGCTTCAATATACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
** * *
23364038 TCAACCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
23364103 AATA
131 AATA
23364107 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
23364172 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
23364237 AATA
131 AATA
*
23364241 TAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
*
23364306 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGTCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
23364371 AATA
131 AATA
* *
23364375 TAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTTCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
23364440 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
23364505 AATA
131 AATA
* *
23364509 CAGGGACA-AGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCTATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
*
23364573 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTACCA
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
23364638 AATA
131 AATA
* *
23364642 CAGGGACA-AGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
* *
23364706 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC
66 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCC
23364769 -AATA
130 AAATA
23364773 CA
1 CA
23364775 TGAAGATAAG
Statistics
Matches: 642, Mismatches: 25, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
131 6 0.01
132 2 0.00
133 239 0.37
134 395 0.62
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (134 bp):
CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCT
TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
AATA
Found at i:23364788 original size:44 final size:43
Alignment explanation
Indices: 23364695--23365273 Score: 473
Period size: 44 Copynumber: 13.1 Consensus size: 43
23364685 GGGAGGTAAA
* * * * *
23364695 ATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTC-C-ACC-AATATAGGAAGACAAG
* * * * *
23364741 ATCTGCAATCTTCGATCTACTTCACGCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAAG
* * * *
23364785 ATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATATAGGAAGACAAG
* * * * *
23364830 ATCTGC-ATCTTGGATCCACTTCCTATCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAAG
* * * * * *
23364873 ATCTGCTACCTTCGATTTACTTCACGCCAATACATGCAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAAG
* * * *
23364917 ATCTGCTTTCTGCTATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATATAGGAAGACAAG
* * *
23364962 ATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAAG
* * * *
23365005 ATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAAG
* * * *
23365049 ATTTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATATAGGAAGACAAG
* * *
23365094 ATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAAG
* * * *
23365137 ATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTC-CACCAATATAGGAAGACAAG
* * *
23365181 ATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTT--CCACCAATATAGGAAGACAAG
* * * *
23365226 ATCTGC-ATCTTTGATCCACTTCCTACCAATATAGGAAGATAGG
1 ATCTGCTATCTTCGATCTACTTCC-ACCAATATAGGAAGACAAG
23365269 ATCTG
1 ATCTG
23365274 TTCCTTTGAC
Statistics
Matches: 421, Mismatches: 94, Indels: 39
0.76 0.17 0.07
Matches are distributed among these distances:
42 8 0.02
43 85 0.20
44 212 0.50
45 90 0.21
46 26 0.06
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
ATCTGCTATCTTCGATCTACTTCCACCAATATAGGAAGACAAG
Found at i:23364967 original size:132 final size:132
Alignment explanation
Indices: 23364695--23365273 Score: 951
Period size: 132 Copynumber: 4.4 Consensus size: 132
23364685 GGGAGGTAAA
** * * ** * * *
23364695 ATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTA
1 ATCTG-CATCTTCGATCCACTTC-CTACC-AATATAGGAAGATAGGATCTGCTACCTTCGATCTA
* ** *
23364760 CTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAG
63 CTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAG
23364825 ACAAG
128 ACAAG
* * *
23364830 ATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTACCTTCGATTTACTT
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
* *
23364895 CACGCCAATACATGCAGACAAGATCTGCTTTCTGCTATCTACTTCGCCACCAATATGGGAAGACA
66 CACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
23364960 AG
131 AG
23364962 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
*
23365027 CACGCCAATACATGAAGACAAGATTTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
66 CACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
23365092 AG
131 AG
23365094 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
23365159 CACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
66 CACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
23365224 AG
131 AG
*
23365226 ATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
1 ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
23365274 TTCCTTTGAC
Statistics
Matches: 418, Mismatches: 26, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
132 396 0.95
133 3 0.01
134 14 0.03
135 5 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
ATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT
CACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACA
AG
Found at i:23390520 original size:12 final size:12
Alignment explanation
Indices: 23390505--23390547 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
23390495 TTTCTTTTGC
23390505 TTTTCAAAGGCT
1 TTTTCAAAGGCT
23390517 TTTTCAAAGGCT
1 TTTTCAAAGGCT
23390529 TTTTCAAAGGCT
1 TTTTCAAAGGCT
23390541 TTTTCAA
1 TTTTCAA
23390548 GTTCTCTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:23390624 original size:6 final size:6
Alignment explanation
Indices: 23390608--23390657 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
23390598 TTTCTTTTTA
*
23390608 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
23390657 T
1 T
23390658 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:23390640 original size:37 final size:37
Alignment explanation
Indices: 23390597--23390667 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
23390587 CTTGCCTCTC
23390597 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
23390634 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
23390668 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:23390668 original size:16 final size:16
Alignment explanation
Indices: 23390593--23390653 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
23390583 GCCTCTTGCC
*
23390593 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
23390609 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
23390625 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
23390641 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
23390654 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:23391601 original size:12 final size:12
Alignment explanation
Indices: 23391586--23391633 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
23391576 GATTTTTCGA
23391586 TTTTTTTTAAAT
1 TTTTTTTTAAAT
**
23391598 TTTTTTTTCGA-
1 TTTTTTTTAAAT
*
23391609 TTTTTTTTCAAT
1 TTTTTTTTAAAT
23391621 TTTTTTTTCAAAT
1 TTTTTTTT-AAAT
23391634 GTCCTCTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTTTTTTAAAT
Found at i:23391604 original size:23 final size:23
Alignment explanation
Indices: 23391578--23391629 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
23391568 TATACTTCGA
23391578 TTTTTCGATTTTTTTTAAATTTT
1 TTTTTCGATTTTTTTTAAATTTT
*
23391601 TTTTTCGATTTTTTTTCAATTTT
1 TTTTTCGATTTTTTTTAAATTTT
23391624 TTTTTC
1 TTTTTC
23391630 AAATGTCCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.13, C:0.08, G:0.04, T:0.75
Consensus pattern (23 bp):
TTTTTCGATTTTTTTTAAATTTT
Found at i:23391612 original size:10 final size:11
Alignment explanation
Indices: 23391578--23391627 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
23391568 TATACTTCGA
*
23391578 TTTTTCGATTT
1 TTTTTCAATTT
*
23391589 TTTTTAAATTTT
1 TTTTTCAA-TTT
*
23391601 TTTTTCGATTT
1 TTTTTCAATTT
23391612 TTTTTCAATTT
1 TTTTTCAATTT
23391623 TTTTT
1 TTTTT
23391628 TCAAATGTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
11 24 0.73
12 9 0.27
ACGTcount: A:0.14, C:0.06, G:0.04, T:0.76
Consensus pattern (11 bp):
TTTTTCAATTT
Found at i:23393353 original size:30 final size:30
Alignment explanation
Indices: 23393314--23393385 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
23393304 GAGTTTAAAG
* *
23393314 TAAA-ATGAGCTAAGTTTTAGCTCGTGAGC
1 TAAATATGAGCTAAGGTTTAGCTCGTAAGC
23393343 TAAAGT-TGAGCTAAGGTTTAGCTCGTAAGC
1 TAAA-TATGAGCTAAGGTTTAGCTCGTAAGC
23393373 TAAATATGAGCTA
1 TAAATATGAGCTA
23393386 GGAGTGAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
29 5 0.13
30 33 0.87
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (30 bp):
TAAATATGAGCTAAGGTTTAGCTCGTAAGC
Found at i:23393396 original size:30 final size:30
Alignment explanation
Indices: 23393332--23393397 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
23393322 GCTAAGTTTT
* * *
23393332 AGCTCGTGAGCTAAAGTTGAGCTAAGGTTT
1 AGCTCGTAAGCTAAAGTTGAGCTAAGGGTG
23393362 AGCTCGTAAGCTAAA-TATGAGCT-AGGAGTG
1 AGCTCGTAAGCTAAAGT-TGAGCTAAGG-GTG
23393392 AGCTCG
1 AGCTCG
23393398 GTTTAGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 4 0.13
30 27 0.87
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (30 bp):
AGCTCGTAAGCTAAAGTTGAGCTAAGGGTG
Done.