Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 85 of 185
Found at i:26529459 original size:7 final size:7
Alignment explanation
Indices: 26529440--26529473 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
26529430 AATAATTATA
26529440 TATGGATT
1 TATGGA-T
26529448 TATGGAT
1 TATGGAT
26529455 TATGGAT
1 TATGGAT
*
26529462 TAGGGAT
1 TATGGAT
26529469 TATGG
1 TATGG
26529474 TTTAAGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.41
Consensus pattern (7 bp):
TATGGAT
Found at i:26529470 original size:14 final size:15
Alignment explanation
Indices: 26529440--26529491 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 15
26529430 AATAATTATA
*
26529440 TATGGATTTATGGAT
1 TATGGATTTAGGGAT
26529455 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
26529469 TATGG-TTTAAGGG-T
1 TATGGATTT-AGGGAT
26529483 TA-GGATTTA
1 TATGGATTTA
26529492 AGGTTTAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 3 0.09
14 20 0.61
15 10 0.30
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:26529485 original size:21 final size:22
Alignment explanation
Indices: 26529443--26529506 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
26529433 AATTATATAT
* * *
26529443 GGATTTATGGATTATGGATTAG
1 GGATTTATGGTTTAAGGGTTAG
26529465 GGA-TTATGGTTTAAGGGTTA-
1 GGATTTATGGTTTAAGGGTTAG
* *
26529485 GGATTTAAGGTTTAGGGGTTAG
1 GGATTTATGGTTTAAGGGTTAG
26529507 AAGTTAGGGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 3 0.09
21 29 0.83
22 3 0.09
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (22 bp):
GGATTTATGGTTTAAGGGTTAG
Found at i:26529546 original size:21 final size:21
Alignment explanation
Indices: 26529472--26529544 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
26529462 TAGGGATTAT
* * * *
26529472 GGTTTAAGGGTTAGGATTTAA
1 GGTTTAGGGGTTAAGAGTTAG
26529493 GGTTTAGGGGTT-AGAAGTTAG
1 GGTTTAGGGGTTAAG-AGTTAG
*
26529514 GGGTTAGGGGTTAAGAGTTAG
1 GGTTTAGGGGTTAAGAGTTAG
26529535 GGATTTAGGG
1 GG-TTTAGGG
26529545 TTTAGGATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
20 1 0.02
21 34 0.79
22 8 0.19
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.33
Consensus pattern (21 bp):
GGTTTAGGGGTTAAGAGTTAG
Found at i:26529933 original size:72 final size:72
Alignment explanation
Indices: 26529847--26530026 Score: 360
Period size: 72 Copynumber: 2.5 Consensus size: 72
26529837 TTGGTATATT
26529847 TGATATGGATATATAGGTAATTATTTAATTTGGATAGGACCAAATTATAAGAAAAAAATACAAAA
1 TGATATGGATATATAGGTAATTATTTAATTTGGATAGGACCAAATTATAAGAAAAAAATACAAAA
26529912 ATAAAAA
66 ATAAAAA
26529919 TGATATGGATATATAGGTAATTATTTAATTTGGATAGGACCAAATTATAAGAAAAAAATACAAAA
1 TGATATGGATATATAGGTAATTATTTAATTTGGATAGGACCAAATTATAAGAAAAAAATACAAAA
26529984 ATAAAAA
66 ATAAAAA
26529991 TGATATGGATATATAGGTAATTATTTAATTTGGATA
1 TGATATGGATATATAGGTAATTATTTAATTTGGATA
26530027 ATTCTAACTT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 108 1.00
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.32
Consensus pattern (72 bp):
TGATATGGATATATAGGTAATTATTTAATTTGGATAGGACCAAATTATAAGAAAAAAATACAAAA
ATAAAAA
Found at i:26530266 original size:26 final size:26
Alignment explanation
Indices: 26530215--26530263 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
26530205 TTTGCAGCGT
*
26530215 TTTTATAAAAAACGCCACAAAAAATA
1 TTTTATAAAAAACGACACAAAAAATA
26530241 TTTTAT-AAAAACGACACAAAAAA
1 TTTTATAAAAAACGACACAAAAAA
26530264 ATAATTTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.59, C:0.14, G:0.04, T:0.22
Consensus pattern (26 bp):
TTTTATAAAAAACGACACAAAAAATA
Found at i:26533037 original size:43 final size:43
Alignment explanation
Indices: 26532988--26533154 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
26532978 AAGGTTTGTT
*
26532988 CTATAGCAGAGTTTGTGGGA-AAGGTGCCGCTAAAGGTCTTAAG
1 CTATAGCAGAGTTTGTGGGAGAA-GCGCCGCTAAAGGTCTTAAG
* * * * *
26533031 CTATAGCGGCGGTTT-TTGGAGAAGCACCGCTAAAGGTCTTGAG
1 CTATAGCAG-AGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTAAG
* * * *
26533074 CTATAGCAGCGTTTGTGGGAGAAGCGCCGCTAAATGTCCTAAT
1 CTATAGCAGAGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTAAG
* * *
26533117 CTATAGCA-ACGTTTGTGGAAAAAGCGTCGCTAAAGGTC
1 CTATAGCAGA-GTTTGTGGGAGAAGCGCCGCTAAAGGTC
26533155 ATGATCTATA
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 4 0.04
43 91 0.90
44 6 0.06
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (43 bp):
CTATAGCAGAGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTAAG
Found at i:26533089 original size:86 final size:85
Alignment explanation
Indices: 26532949--26533123 Score: 219
Period size: 86 Copynumber: 2.0 Consensus size: 85
26532939 GTTATGTTTT
* ** *
26532949 TAGCGGCGTTTTTGCGAGAAGCGCCAATAAAGGTTTGTTCTATAGCAGAGTTTGTGGGA-AAGGT
1 TAGCGGCGTTTTTGCGAGAAGCACCAATAAAGGTTTGAGCTATAGCAGAGTTTGTGGGAGAA-GC
*
26533013 GCCGCTAAAGGTCTTAAGCTA
65 GCCGCTAAAGGTCCTAAGCTA
** *
26533034 TAGCGGCGGTTTTTG-GAGAAGCACCGCTAAAGGTCTTGAGCTATAGCAGCGTTTGTGGGAGAAG
1 TAGCGGC-GTTTTTGCGAGAAGCACCAATAAAGGT-TTGAGCTATAGCAGAGTTTGTGGGAGAAG
* *
26533098 CGCCGCTAAATGTCCTAATCTA
64 CGCCGCTAAAGGTCCTAAGCTA
26533120 TAGC
1 TAGC
26533124 AACGTTTGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 23 0.30
86 52 0.68
87 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (85 bp):
TAGCGGCGTTTTTGCGAGAAGCACCAATAAAGGTTTGAGCTATAGCAGAGTTTGTGGGAGAAGCG
CCGCTAAAGGTCCTAAGCTA
Found at i:26533148 original size:86 final size:86
Alignment explanation
Indices: 26532988--26533166 Score: 209
Period size: 86 Copynumber: 2.1 Consensus size: 86
26532978 AAGGTTTGTT
* * ** * *
26532988 CTATAGCAGAGTTTGTGGGAAAGGTGCCGCTAAAGGTCTTAAGCTATAGCGGCGGTTTTTGGAGA
1 CTATAGCAGAGTTTGTGGGAAAGGCGCCGCTAAAGGTCCTAAGCTATAGCAACGGTTTGTGGAAA
*
26533053 AGCACCGCTAAAGGTCTTGAG
66 AGCACCGCTAAAGGTCATGAG
* * *
26533074 CTATAGCAGCGTTTGTGGGAGAA-GCGCCGCTAAATGTCCTAATCTATAGCAAC-GTTTGTGGAA
1 CTATAGCAGAGTTTGTGGGA-AAGGCGCCGCTAAAGGTCCTAAGCTATAGCAACGGTTTGTGG-A
** *
26533137 AAAGCGTCGCTAAAGGTCATGAT
64 AAAGCACCGCTAAAGGTCATGAG
26533160 CTATAGC
1 CTATAGC
26533167 GGCATTTATT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 7 0.09
86 69 0.88
87 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (86 bp):
CTATAGCAGAGTTTGTGGGAAAGGCGCCGCTAAAGGTCCTAAGCTATAGCAACGGTTTGTGGAAA
AGCACCGCTAAAGGTCATGAG
Found at i:26547106 original size:35 final size:35
Alignment explanation
Indices: 26547060--26547130 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
26547050 TCCTCTTAGC
26547060 AAGGTAAGTATGGTACTTGTCAATTGAGTTTATTA
1 AAGGTAAGTATGGTACTTGTCAATTGAGTTTATTA
26547095 AAGGTAAGTATGGTACTTGTCAATTGAGTTTATTA
1 AAGGTAAGTATGGTACTTGTCAATTGAGTTTATTA
26547130 A
1 A
26547131 GCATTTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (35 bp):
AAGGTAAGTATGGTACTTGTCAATTGAGTTTATTA
Found at i:26554816 original size:52 final size:52
Alignment explanation
Indices: 26554738--26554842 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
26554728 ATAAAAATAA
26554738 GGTGGCTCCTCCCAATCCAATGGGAAAATCGTAGGGATTCCTAGGGGTTTAT
1 GGTGGCTCCTCCCAATCCAATGGGAAAATCGTAGGGATTCCTAGGGGTTTAT
26554790 GGTGGCTCCTCCCAATCCAATGGGAAAATCGTAGGGATTCCTAGGGGTTTAT
1 GGTGGCTCCTCCCAATCCAATGGGAAAATCGTAGGGATTCCTAGGGGTTTAT
26554842 G
1 G
26554843 CTGCTTCTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (52 bp):
GGTGGCTCCTCCCAATCCAATGGGAAAATCGTAGGGATTCCTAGGGGTTTAT
Found at i:26556060 original size:16 final size:17
Alignment explanation
Indices: 26556039--26556072 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26556029 AATAATATGG
*
26556039 GCAAAATTGT-AATTTT
1 GCAAAAGTGTGAATTTT
26556055 GCAAAAGTGTGAATTTT
1 GCAAAAGTGTGAATTTT
26556072 G
1 G
26556073 GATTAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (17 bp):
GCAAAAGTGTGAATTTT
Found at i:26566347 original size:18 final size:18
Alignment explanation
Indices: 26566324--26566358 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26566314 ACCGAAATTA
26566324 ATTAATATAA-TTGTTTAT
1 ATTAATA-AATTTGTTTAT
26566342 ATTAATAAATTTGTTTA
1 ATTAATAAATTTGTTTA
26566359 AATATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (18 bp):
ATTAATAAATTTGTTTAT
Found at i:26566663 original size:137 final size:138
Alignment explanation
Indices: 26566264--26566682 Score: 626
Period size: 138 Copynumber: 3.0 Consensus size: 138
26566254 TAGAAAAATG
* * *
26566264 AATTATATTCTTTCCAAAAGAATATTAGTTTACT-TGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTTCAAAATAATATTAATTT-CTATGTCTTTTATATTTTGACCGAAATTAATTA
* * * * *
26566328 ATATAATTGTTTATATTAATAAATTTGTTTAAATATATACAATTAATATTTTGTATGAATTAAAT
65 ATATAACTATTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAAT
26566393 TCATATATT
130 TCATATATT
* * *
26566402 AATTATATTCTTTTCAAAATAATATTAATTTCCATGTCTTTTATAATTTGATCGAAATTAATTAA
1 AATTATATTCTTTTCAAAATAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
26566467 TATAACTTTTTCTATTAATAATTTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAATT
26566532 CATATATT
131 CATATATT
* * *
26566540 AATTATATTATTTTCAAAATAATATTAATTTCTATGTTTTTTAT-TTTTGACCTAAATTAATTAA
1 AATTATATTCTTTTCAAAATAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
* **
26566604 TATAACTACTTATATTAATAAATTCCATAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAATT
26566669 CATATATT
131 CATATATT
26566677 AATTAT
1 AATTAT
26566683 GTTCATGTTC
Statistics
Matches: 254, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
137 90 0.35
138 164 0.65
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (138 bp):
AATTATATTCTTTTCAAAATAATATTAATTTCTATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTTGATAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:26568113 original size:45 final size:44
Alignment explanation
Indices: 26568050--26568249 Score: 181
Period size: 45 Copynumber: 4.5 Consensus size: 44
26568040 GATGTCATGG
* * * * *
26568050 TATCTTCCAACCATGGTCTTATGTATTTCCGAAGTAGTGCCATAG
1 TATCTTTCAACTATGGTCTTATGTATTT-CGAATTAATGCCATAA
26568095 TATCTTTCAACTATGGTCTTATTCGTA--TCGAATTTAATGCCATAA
1 TATCTTTCAACTATGGTCTTA-T-GTATTTCGAA-TTAATGCCATAA
*** ** * ** *
26568140 TATCTTTCAACTATGGTCTTACACATTTTCGGTTTAGTGTTATAT
1 TATCTTTCAACTATGGTCTTATGTA-TTTCGAATTAATGCCATAA
**
26568185 TATCTTTCAACTATGGTCTTAT-TCATTTCGGTTTAATGCCATAA
1 TATCTTTCAACTATGGTCTTATGT-ATTTCGAATTAATGCCATAA
26568229 TATCTTTCAACTATGGTCTTA
1 TATCTTTCAACTATGGTCTTA
26568250 CTCTTTTTGG
Statistics
Matches: 128, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.01
44 40 0.31
45 80 0.62
46 4 0.03
47 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.43
Consensus pattern (44 bp):
TATCTTTCAACTATGGTCTTATGTATTTCGAATTAATGCCATAA
Found at i:26568278 original size:89 final size:90
Alignment explanation
Indices: 26568087--26568293 Score: 267
Period size: 89 Copynumber: 2.3 Consensus size: 90
26568077 TCCGAAGTAG
*
26568087 TGCCATAGTATCTTTCAACTATGGTCTTATTCGTATCGAATTTAATGCCATAATATCTTTCAACT
1 TGCCATAGTATCTTTCAACTATGGTCTTATTCATATCGAATTTAATGCCATAATATCTTTCAACT
** *
26568152 ATGGTCTTACACATTTTCGGTTTAG
66 ATGGTCTTACACATTTTCGGTAAAA
** * * *
26568177 TGTTATATTATCTTTCAACTATGGTCTTATTCATTTCG-GTTTAATGCCATAATATCTTTCAACT
1 TGCCATAGTATCTTTCAACTATGGTCTTATTCATATCGAATTTAATGCCATAATATCTTTCAACT
* * *
26568241 ATGGTCTTACTCTTTTTGGGTAAAA
66 ATGGTCTTACACATTTTCGGTAAAA
26568266 TGCCAT-GATATCTTTCAA-TCATGGTCTT
1 TGCCATAG-TATCTTTCAACT-ATGGTCTT
26568294 TCTTGTCTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
88 1 0.01
89 66 0.66
90 33 0.33
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (90 bp):
TGCCATAGTATCTTTCAACTATGGTCTTATTCATATCGAATTTAATGCCATAATATCTTTCAACT
ATGGTCTTACACATTTTCGGTAAAA
Found at i:26568283 original size:45 final size:44
Alignment explanation
Indices: 26568087--26568293 Score: 227
Period size: 45 Copynumber: 4.6 Consensus size: 44
26568077 TCCGAAGTAG
* * * * *
26568087 TGCCATAGTATCTTTCAACTATGGTCTTATTCGTATCGAATTTAA
1 TGCCATAATATCTTTCAACTATGGTCTTACTCTTTTCG-GTTTAA
* *
26568132 TGCCATAATATCTTTCAACTATGGTCTTACACATTTTCGGTTTAG
1 TGCCATAATATCTTTCAACTATGGTCTTACTC-TTTTCGGTTTAA
** * * *
26568177 TGTTATATTATCTTTCAACTATGGTCTTATTCATTTCGGTTTAA
1 TGCCATAATATCTTTCAACTATGGTCTTACTCTTTTCGGTTTAA
* **
26568221 TGCCATAATATCTTTCAACTATGGTCTTACTCTTTTTGGGTAAAA
1 TGCCATAATATCTTTCAACTATGGTCTTACTC-TTTTCGGTTTAA
*
26568266 TGCCATGATATCTTTCAA-TCATGGTCTT
1 TGCCATAATATCTTTCAACT-ATGGTCTT
26568294 TCTTGTCTCT
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
44 39 0.29
45 93 0.68
46 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (44 bp):
TGCCATAATATCTTTCAACTATGGTCTTACTCTTTTCGGTTTAA
Found at i:26572726 original size:25 final size:25
Alignment explanation
Indices: 26572698--26572746 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26572688 ACCGATTCTT
26572698 AGCTAGAAAGAGCTTACCAATATTC
1 AGCTAGAAAGAGCTTACCAATATTC
* * * *
26572723 AGCTAGCATGAGTTTACCATTATT
1 AGCTAGAAAGAGCTTACCAATATT
26572747 TAGTTTAGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (25 bp):
AGCTAGAAAGAGCTTACCAATATTC
Found at i:26575972 original size:28 final size:27
Alignment explanation
Indices: 26575909--26576060 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26575899 ATATTAAGTC
* *
26575909 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
26575936 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
26575964 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26575991 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
26576019 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
26576046 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26576061 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26575993 original size:55 final size:55
Alignment explanation
Indices: 26575909--26576085 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
26575899 ATATTAAGTC
* * *
26575909 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26575964 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
26576019 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
26576075 CGCACACTTAG
1 CGCACACTTAG
26576086 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26584116 original size:28 final size:27
Alignment explanation
Indices: 26584053--26584204 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
26584043 ATATTAAGTC
* * *
26584053 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26584080 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
26584108 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26584135 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26584163 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
26584190 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26584205 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26584137 original size:55 final size:55
Alignment explanation
Indices: 26584053--26584204 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
26584043 ATATTAAGTC
* * *
26584053 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26584108 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26584163 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
26584205 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26589187 original size:22 final size:22
Alignment explanation
Indices: 26589146--26589187 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26589136 ATTGCCAAGA
**
26589146 TGGCACAGAGCCATTTTTAGGT
1 TGGCACAGAGCCATAATTAGGT
26589168 TGGCACAGAGCCATAATTAG
1 TGGCACAGAGCCATAATTAG
26589188 ATTAAGCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (22 bp):
TGGCACAGAGCCATAATTAGGT
Found at i:26589574 original size:27 final size:27
Alignment explanation
Indices: 26589544--26589727 Score: 134
Period size: 27 Copynumber: 7.0 Consensus size: 27
26589534 TCATTTTGCC
*
26589544 CTATAGAGGTATTTCAATAATTTTACA
1 CTATAGAGGTATTTCAGTAATTTTACA
*
26589571 CTATA-AGGATATTTCAGTAATTTTAAA
1 CTATAGAGG-TATTTCAGTAATTTTACA
* *
26589598 CTACAGTGGTATTTCAGTAATTTTACA
1 CTATAGAGGTATTTCAGTAATTTTACA
* ** *
26589625 CTATAGGGGTATTTTGGTAA-TTTAAA
1 CTATAGAGGTATTTCAGTAATTTTACA
* **
26589651 AT-TAG-GGTTATTTTGGTAATTTTACA
1 CTATAGAGG-TATTTCAGTAATTTTACA
*
26589677 --ACTAG-GGTATTTTAGTAA-TTTACA
1 CTA-TAGAGGTATTTCAGTAATTTTACA
* * *
26589701 -AATCGAGGGTATTTCGGTAATTTTACA
1 CTATAGA-GGTATTTCAGTAATTTTACA
26589728 AATCAGGGGT
Statistics
Matches: 131, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
24 10 0.08
25 25 0.19
26 30 0.23
27 64 0.49
28 2 0.02
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (27 bp):
CTATAGAGGTATTTCAGTAATTTTACA
Found at i:26589737 original size:27 final size:27
Alignment explanation
Indices: 26589580--26589794 Score: 164
Period size: 27 Copynumber: 8.1 Consensus size: 27
26589570 ACTATAAGGA
* * *
26589580 TATTTCAGTAATTTTA-AACTACAGTGG
1 TATTTCGGTAATTTTACAAAT-CAGGGG
* *
26589607 TATTTCAGTAATTTTACACTAT-AGGGG
1 TATTTCGGTAATTTTACA-AATCAGGGG
* * *
26589634 TATTTTGGTAA-TTTA-AAATTAGGGT
1 TATTTCGGTAATTTTACAAATCAGGGG
* *
26589659 TATTTTGGTAATTTTACAACT-A-GGG
1 TATTTCGGTAATTTTACAAATCAGGGG
**
26589684 TATTTTAGTAA-TTTACAAATC-GAGGG
1 TATTTCGGTAATTTTACAAATCAG-GGG
26589710 TATTTCGGTAATTTTACAAATCAGGGG
1 TATTTCGGTAATTTTACAAATCAGGGG
* * *
26589737 TAATTT-GATAATTTTACAAA-CCGAGAG
1 T-ATTTCGGTAATTTTACAAATCAG-GGG
26589764 TATTTCGGTAATTTTACAAATC-GAGGG
1 TATTTCGGTAATTTTACAAATCAG-GGG
26589791 TATT
1 TATT
26589795 AATAACCGAA
Statistics
Matches: 156, Mismatches: 18, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
24 10 0.06
25 28 0.18
26 27 0.17
27 83 0.53
28 7 0.04
29 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCAGGGG
Found at i:26593003 original size:26 final size:26
Alignment explanation
Indices: 26592973--26593026 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26592963 GTGAATGTTT
26592973 GAAAGAATGGAGAAAAATGCTTTGAG
1 GAAAGAATGGAGAAAAATGCTTTGAG
26592999 GAAAGAATGGAGAAAAATGCTTTGAG
1 GAAAGAATGGAGAAAAATGCTTTGAG
26593025 GA
1 GA
26593027 TTTCGGCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.31, T:0.19
Consensus pattern (26 bp):
GAAAGAATGGAGAAAAATGCTTTGAG
Found at i:26595236 original size:48 final size:48
Alignment explanation
Indices: 26595172--26595460 Score: 465
Period size: 48 Copynumber: 6.0 Consensus size: 48
26595162 ACAGATAAAT
* *
26595172 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
26595220 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT-ATGAG
* *
26595269 ATATGTATATGTGGTAAAGCCGAATGGCTACTGGGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
26595317 ATATGTATATGAGGTAAAGCCAAATGGCTAATGTGAAATA--TATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
26595363 ATATGTATATGTGGCAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
26595411 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
26595459 AT
1 AT
26595461 GTGTGTATAT
Statistics
Matches: 222, Mismatches: 16, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 41 0.18
48 135 0.61
49 46 0.21
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:26595415 original size:94 final size:95
Alignment explanation
Indices: 26595172--26595451 Score: 454
Period size: 94 Copynumber: 2.9 Consensus size: 95
26595162 ACAGATAAAT
* *
26595172 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
26595237 AGCCGAATGGCTAGTGTGAAATATGTAATGAG
66 AGCCGAATGGCTAGTGTGAAATA--TAATGAG
* * *
26595269 ATATGTATATGTGGTAAAGCCGAATGGCTACTGGGAAATATGTATGAGATATGTATATGAGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
26595334 AGCCAAATGGCTAATGTGAAATAT-ATGAG
66 AGCCGAATGGCTAGTGTGAAATATAATGAG
* *
26595363 ATATGTATATGTGGCAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
26595428 AGCCGAATGGCTAGTGTGAAATAT
66 AGCCGAATGGCTAGTGTGAAATAT
26595452 GTAGGAGATG
Statistics
Matches: 169, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
94 87 0.51
95 1 0.01
97 81 0.48
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (95 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATAATGAG
Found at i:26595482 original size:94 final size:93
Alignment explanation
Indices: 26595190--26595482 Score: 371
Period size: 94 Copynumber: 3.1 Consensus size: 93
26595180 GTGTGGTAAA
26595190 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
26595255 AAATATGTAATGAGA-TATGTATATGTGGTAAA
66 AAATATGT-ATGAGATTGTGTATAT-T-GT--G
* * * * *
26595287 GCCGAATGGCTACTGGGAAATATGTATGAGATATGTATATGAGGTAAAGCCAAATGGCTAATGTG
1 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
26595352 AAATA--TATGAGA-TATGTATA-TGTG
66 AAATATGTATGAGATTGTGTATATTGTG
26595376 GCAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 GC----C-GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
26595441 GTGTGAAATATGTAGGAGATGTGTGTATATTGTG
61 GTGTGAAATATGTATGAGAT-TGTGTATATTGTG
26595475 GCCGAATG
1 GCCGAATG
26595483 ACCAAATGTG
Statistics
Matches: 173, Mismatches: 13, Indels: 23
0.83 0.06 0.11
Matches are distributed among these distances:
89 2 0.01
91 2 0.01
92 1 0.01
93 1 0.01
94 81 0.47
95 2 0.01
96 6 0.03
97 65 0.38
98 7 0.04
99 6 0.03
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (93 bp):
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
AAATATGTATGAGATTGTGTATATTGTG
Found at i:26595651 original size:37 final size:37
Alignment explanation
Indices: 26595601--26595740 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
26595591 GGAAATATAT
26595601 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26595638 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
26595675 TCCGGGTAAGACCCGAAGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
26595712 TCTGGGTAAGACACGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
26595741 GGACTATTTG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26619903 original size:19 final size:21
Alignment explanation
Indices: 26619873--26619918 Score: 69
Period size: 19 Copynumber: 2.3 Consensus size: 21
26619863 GTGTGATCCC
*
26619873 TGTTTCCCAAATTTTC-ATTT
1 TGTTTCCAAAATTTTCTATTT
26619893 T-TTTCCAAAATTTTCTATTT
1 TGTTTCCAAAATTTTCTATTT
26619913 TGTTTC
1 TGTTTC
26619919 AAATTTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 13 0.57
20 6 0.26
21 4 0.17
ACGTcount: A:0.20, C:0.17, G:0.04, T:0.59
Consensus pattern (21 bp):
TGTTTCCAAAATTTTCTATTT
Found at i:26619922 original size:19 final size:18
Alignment explanation
Indices: 26619879--26619924 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
26619869 TCCCTGTTTC
26619879 CCAAATTTTCATTTTTTT
1 CCAAATTTTCATTTTTTT
26619897 CCAAAATTTTCTATTTTGTTT
1 CC-AAATTTTC-ATTTT-TTT
26619918 -CAAATTT
1 CCAAATTT
26619925 AATCCTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 2 0.08
19 14 0.56
20 6 0.24
21 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (18 bp):
CCAAATTTTCATTTTTTT
Found at i:26621417 original size:288 final size:289
Alignment explanation
Indices: 26620897--26621750 Score: 1133
Period size: 288 Copynumber: 3.0 Consensus size: 289
26620887 AATCTCGTCT
* *
26620897 AAAAATTCTACTCATGTAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAAATCAAAA-GTG
1 AAAAATTCTACTCACGCAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAAATCAAAATG-G
* ** * * *
26620961 AGTGGTTTA-AGGTGCATTGCGAAGGTATGAAACAGATCTTCAATCGATGTGCAGACATATTGTC
65 AGTGGTTCAGA-GTGCATTGCGAAGGTAAAAAATAAATCTTCAATCGATATGCAGACATATTGTC
* * *
26621025 CCAAAAGTGCTTGGATCCATTCCACAAATGCACTGCAAGTCGACTGAATATAATATGACTAAGCG
129 CCAAAAATGCTTGGATCCATTCCACAAATGCACTGCAAGTTGACTGAATATAACATGACTAAGCG
* * * ** * ***
26621090 TGTGGGATTGATTAGGGTCCTTGATGTGTAATGCCTAAGCTTATTAACATCTTCCAAATGAAATT
194 TGTGGGCTTGATTGGGGTCCTTGAAGTGTAACACCTAAGCTTATTAACATCTTCCACATGGGCTT
26621155 GTCATCATGGATTGATATTTGAAGTCCAC-A
259 GTCATCATGGATTGATATTTGAAGTCCACAA
* *
26621185 AAAAATTATACTCACGCAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAATTCAAAATGGA
1 AAAAATTCTACTCACGCAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAAATCAAAATGGA
*
26621250 GTGGTATCAGAGTGCGTTGCGAAGGTAAAAAATAAATCTTCAATCGATATGCAGACATATTGTCC
66 GTGGT-TCAGAGTGCATTGCGAAGGTAAAAAATAAATCTTCAATCGATATGCAGACATATTGTCC
* * ** * * *
26621315 CAAAAATACTTGGATCCATTCCAAAAATGCACCACAAGTTGACTAAATAT-ACATGGCTAAGTGT
130 CAAAAATGCTTGGATCCATTCCACAAATGCACTGCAAGTTGACTGAATATAACATGACTAAGCGT
*
26621379 GTGGGCTTGATTGGGGTCCTTGAAGTGTAACACCTAAGCTTATTAACATCTTTCACATGGGCTTG
195 GTGGGCTTGATTGGGGTCCTTGAAGTGTAACACCTAAGCTTATTAACATCTTCCACATGGGCTTG
* *
26621444 TTATCATGGATTGATATTTTAAGTCCACAA
260 TCATCATGGATTGATATTTGAAGTCCACAA
** * ** * * *
26621474 AAAAATTCTACTTGCGCAGTCTTCACTACAATGGTCATAACTTGATTTCCCAAACTCGAAATCGA
1 AAAAATTCTACTCACGCAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAAATCAAAATGGA
* * * * * * *
26621539 ATGGTTCAAAGTGCATTACAAAGGTAAAAAATAAATCTTCAATCGATATGCAAACATATTCTCCA
66 GTGGTTCAGAGTGCATTGCGAAGGTAAAAAATAAATCTTCAATCGATATGCAGACATATTGTCCC
* * * *
26621604 AAAAATGCTTGGATCCATTCGACAAATGCATTGCAAGTTTACTGAATATAACATTACTAAGCGTG
131 AAAAATGCTTGGATCCATTCCACAAATGCACTGCAAGTTGACTGAATATAACATGACTAAGCGTG
* * * *
26621669 TAGGCTTGATTGGAGTCCTTGAACTGTAACACCTAAGCTTCTTAACA-CTTCCACATGGGCTTGT
196 TGGGCTTGATTGGGGTCCTTGAAGTGTAACACCTAAGCTTATTAACATCTTCCACATGGGCTTGT
*
26621733 CATCATGGATTAATATTT
261 CATCATGGATTGATATTT
26621751 TAATTCTACG
Statistics
Matches: 493, Mismatches: 68, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
288 282 0.57
289 210 0.43
290 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (289 bp):
AAAAATTCTACTCACGCAGTCTTCACTAAAATGGTCATAACTTGAGATCCCAAAATCAAAATGGA
GTGGTTCAGAGTGCATTGCGAAGGTAAAAAATAAATCTTCAATCGATATGCAGACATATTGTCCC
AAAAATGCTTGGATCCATTCCACAAATGCACTGCAAGTTGACTGAATATAACATGACTAAGCGTG
TGGGCTTGATTGGGGTCCTTGAAGTGTAACACCTAAGCTTATTAACATCTTCCACATGGGCTTGT
CATCATGGATTGATATTTGAAGTCCACAA
Found at i:26623395 original size:26 final size:27
Alignment explanation
Indices: 26623357--26623457 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 27
26623347 AAAATGTGGG
*
26623357 AAGTCCGTCAGGACTATCTTTTGTA-A
1 AAGTCCATCAGGACTATCTTTTGTAGA
* *
26623383 AAGTCCATTAGGACTATCTTTGGTAGA
1 AAGTCCATCAGGACTATCTTTTGTAGA
* * *
26623410 AAGTCCATCAGTATTATCTTCTGTAGA
1 AAGTCCATCAGGACTATCTTTTGTAGA
***
26623437 AAGTTTGTCAGGACTATCTTT
1 AAGTCCATCAGGACTATCTTT
26623458 GGGGGAAGTT
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
26 22 0.37
27 38 0.63
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
AAGTCCATCAGGACTATCTTTTGTAGA
Found at i:26623475 original size:26 final size:26
Alignment explanation
Indices: 26623437--26623507 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
26623427 CTTCTGTAGA
*
26623437 AAGTTTGTCAGGACTATCTTTGGGGG
1 AAGTTTGTGAGGACTATCTTTGGGGG
* *
26623463 AAGTTTGTGAGGACTATCTTTTGTGG
1 AAGTTTGTGAGGACTATCTTTGGGGG
* *
26623489 AAGTCTGTGAAGACTATCT
1 AAGTTTGTGAGGACTATCT
26623508 AAAATGGAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.37
Consensus pattern (26 bp):
AAGTTTGTGAGGACTATCTTTGGGGG
Found at i:26629158 original size:26 final size:26
Alignment explanation
Indices: 26629129--26629179 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26629119 ACACACCAAT
*
26629129 ATCGCAGTAAAACTGCCAATAATAGA
1 ATCGCAGGAAAACTGCCAATAATAGA
* *
26629155 ATCGCAGGAAAGCTGTCAATAATAG
1 ATCGCAGGAAAACTGCCAATAATAG
26629180 TATACTTGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.20
Consensus pattern (26 bp):
ATCGCAGGAAAACTGCCAATAATAGA
Found at i:26629422 original size:27 final size:27
Alignment explanation
Indices: 26629392--26629770 Score: 334
Period size: 27 Copynumber: 14.2 Consensus size: 27
26629382 GGTATAAAAA
* * *
26629392 TCATTTTACACTATGGGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCAG
* *
26629419 TCATTTTACCCTTTGAGGGTATTTCAA
1 TCATTTTACCCTATGAGGGTATTTCAG
*
26629446 TCA--TT--CCTTTGAGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTCAG
* **
26629469 TCAATTTACCCT-TCGAGGGT-TTTTGG
1 TCATTTTACCCTAT-GAGGGTATTTCAG
*
26629495 TCATTTTACCCT-TCAAGGGTATTTCAG
1 TCATTTTACCCTAT-GAGGGTATTTCAG
* *
26629522 TCATTTTACCCTTTAAGGGTATTTCAG
1 TCATTTTACCCTATGAGGGTATTTCAG
26629549 TCATTTTACCCT-TCGAGGGTATTTC-G
1 TCATTTTACCCTAT-GAGGGTATTTCAG
* *
26629575 ATCATTTTACCCTTTGGGGGTATTTCAG
1 -TCATTTTACCCTATGAGGGTATTTCAG
* **
26629603 CCATTTTACCC-ATCGAGGGTATTTTGG
1 TCATTTTACCCTAT-GAGGGTATTTCAG
* * * *
26629630 TTATTTTACCTTTTGAGGGTATTTCAA
1 TCATTTTACCCTATGAGGGTATTTCAG
*
26629657 TCATTTTATCCTATG-GAGGTATTTCAG
1 TCATTTTACCCTATGAG-GGTATTTCAG
* * *
26629684 TCATTTTACCCTGTGGGGGTATTTTAG
1 TCATTTTACCCTATGAGGGTATTTCAG
* *
26629711 TTATTTTACCCTAT-AGGGGTATTTCGG
1 TCATTTTACCCTATGA-GGGTATTTCAG
* *
26629738 TTATTTTACCCTATCAGGGTATTTC-G
1 TCATTTTACCCTATGAGGGTATTTCAG
26629764 ATCATTT
1 -TCATTT
26629771 ATTTACCTCT
Statistics
Matches: 294, Mismatches: 40, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
23 20 0.07
25 4 0.01
26 28 0.10
27 236 0.80
28 6 0.02
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCAG
Found at i:26629622 original size:81 final size:81
Alignment explanation
Indices: 26629408--26629770 Score: 391
Period size: 81 Copynumber: 4.5 Consensus size: 81
26629398 TACACTATGG
*
26629408 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAATCA--TT--CCTTTGAGGGTATTTCAG
1 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCAG
*
26629469 TCAATTTACCCTTCGA
66 TCATTTTACCCTTCGA
* ** *
26629485 GGGT-TTTTGGTCATTTTACCCTTCAAGGGTATTTCAGTCATTTTACCCTTTAAGGGTATTTCAG
1 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCAG
26629549 TCATTTTACCCTTCGA
66 TCATTTTACCCTTCGA
* * * * * **
26629565 GGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGCCATTTTACCCATCGAGGGTATTTTGG
1 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCAG
* * *
26629630 TTATTTTACCTTTTGA
66 TCATTTTACCCTTCGA
** * * * * *
26629646 GGGTATTTCAATCATTTTATCCTATG-GAGGTATTTCAGTCATTTTACCCTGTGGGGGTATTTTA
1 GGGTATTTCGGTCATTTTACCCTTTGAG-GGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCA
* *
26629710 GTTATTTTACCCTATAG-
65 GTCATTTTACCCT-TCGA
* * *
26629727 GGGTATTTCGGTTATTTTACCCTATCAGGGTATTTC-GATCATTT
1 GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAG-TCATTT
26629771 ATTTACCTCT
Statistics
Matches: 241, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
76 32 0.13
77 4 0.02
78 2 0.01
80 38 0.16
81 162 0.67
82 3 0.01
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.44
Consensus pattern (81 bp):
GGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTTGAGGGTATTTCAG
TCATTTTACCCTTCGA
Found at i:26631228 original size:14 final size:14
Alignment explanation
Indices: 26631209--26631238 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26631199 AGTGAGAGAG
*
26631209 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
26631223 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
26631237 GA
1 GA
26631239 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:26643887 original size:17 final size:18
Alignment explanation
Indices: 26643851--26643891 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26643841 TTTAGTTTGG
*
26643851 TTATTTTACTTAGTAGTT
1 TTATTTAACTTAGTAGTT
*
26643869 TTATTTAACTTAGT-TTT
1 TTATTTAACTTAGTAGTT
26643886 TTATTT
1 TTATTT
26643892 TTTACAGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.66
Consensus pattern (18 bp):
TTATTTAACTTAGTAGTT
Found at i:26647227 original size:23 final size:23
Alignment explanation
Indices: 26647197--26647283 Score: 122
Period size: 23 Copynumber: 3.7 Consensus size: 23
26647187 ATACCCTATT
*
26647197 TGGTGTGTTGGGTTGGTCAGAAA
1 TGGTGTGTTGGGTTGGTCAGAGA
26647220 TGGTGTGTTGGGTTGGTCAGAGA
1 TGGTGTGTTGGGTTGGTCAGAGA
26647243 TGGTGTGCTT-GGTTGGTCAGAGA
1 TGGTGTG-TTGGGTTGGTCAGAGA
* *
26647266 TAGTGTGTAGCGGTTGGT
1 TGGTGTGTTG-GGTTGGT
26647284 ATTCAGTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
22 1 0.02
23 48 0.83
24 9 0.16
ACGTcount: A:0.14, C:0.06, G:0.45, T:0.36
Consensus pattern (23 bp):
TGGTGTGTTGGGTTGGTCAGAGA
Found at i:26653509 original size:15 final size:15
Alignment explanation
Indices: 26653489--26653519 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26653479 GGTGATAAAA
26653489 TGACAAAAATACCCT
1 TGACAAAAATACCCT
26653504 TGACAAAAATACCCT
1 TGACAAAAATACCCT
26653519 T
1 T
26653520 AGGTTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.26, G:0.06, T:0.23
Consensus pattern (15 bp):
TGACAAAAATACCCT
Found at i:26657184 original size:247 final size:246
Alignment explanation
Indices: 26656744--26657236 Score: 815
Period size: 247 Copynumber: 2.0 Consensus size: 246
26656734 CTTCAGCTGG
* * *
26656744 ATTTTGTGTGAATCAGTGTTGAGAATGAGCCTGTTGGTTCAATGGTTAAGTGTCTGGCGCATTAC
1 ATTTTGTGTAAATCAGTGTTGAGAATGAGCCTGTTGGTTCAATGGTTAAGTGTCTGCCCCATTAC
*
26656809 TAGTCCTGTGTTCGAGTCGCGATGTGCGTGATATGGAAATATTTTTGTTACTTGTCTAAATTTTG
66 TAGTCCTGTGTTCGAGTCGCGATGTGCGCGATATGGAAATATTTTTGTTACTTGTCTAAATTTTG
*
26656874 AATCGATAATTTCTAAAGGAATTAAACGTCTTATTTCATGTCACTTTTCCTTTTTCGTACTTTTT
131 AATCGATAATTTCTAAAGGAATTAAACGTCTTATTTCATGTCACTTTTCCTTTTTCATACTTTTT
*
26656939 CTTCTTTTTTTCTTTTTCATTTTTATTATTCTTCTCTTCCTTTCGTTTCTTT
196 -TTCTTTTTTTCTCTTTCATTTTTATTATTCTTCTCTTCCTTTCGTTTCTTT
* *
26656991 ATTTTGTGTAAATTAGTGTTGAGAATGAGCCTGTTGGTTCAATGGTTACGTGTCTGCCCCATTAC
1 ATTTTGTGTAAATCAGTGTTGAGAATGAGCCTGTTGGTTCAATGGTTAAGTGTCTGCCCCATTAC
* * * *
26657056 TAGTCCTGTGTTCGAGTCGCGTTGTGCGCGATATGGAAATATTTTTGTTACTTGTCTGACTTTTT
66 TAGTCCTGTGTTCGAGTCGCGATGTGCGCGATATGGAAATATTTTTGTTACTTGTCTAAATTTTG
* * *
26657121 AATCGATAGTTTCTAAAGGAATTAAACGTCTTATTTCCTGTCTCTTTTCCTTTTTCATACTTTTT
131 AATCGATAATTTCTAAAGGAATTAAACGTCTTATTTCATGTCACTTTTCCTTTTTCATACTTTTT
* * *
26657186 TTCTTTTTTTCTCTTTCATTTTTATTCTTCTTCTCTTTCTTTCTTTTCTTT
196 TTCTTTTTTTCTCTTTCATTTTTATTATTCTTCTCTTCCTTTCGTTTCTTT
26657237 TCATTTTGGG
Statistics
Matches: 228, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
246 47 0.21
247 181 0.79
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.49
Consensus pattern (246 bp):
ATTTTGTGTAAATCAGTGTTGAGAATGAGCCTGTTGGTTCAATGGTTAAGTGTCTGCCCCATTAC
TAGTCCTGTGTTCGAGTCGCGATGTGCGCGATATGGAAATATTTTTGTTACTTGTCTAAATTTTG
AATCGATAATTTCTAAAGGAATTAAACGTCTTATTTCATGTCACTTTTCCTTTTTCATACTTTTT
TTCTTTTTTTCTCTTTCATTTTTATTATTCTTCTCTTCCTTTCGTTTCTTT
Found at i:26657213 original size:16 final size:14
Alignment explanation
Indices: 26657185--26657237 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 14
26657175 TCATACTTTT
26657185 TTTCTTTTTTTCTC
1 TTTCTTTTTTTCTC
26657199 TTTCATTTTTATTCTTC
1 TTTC-TTTTT-TTC-TC
*
26657216 TTCTCTTTCTTTCT-
1 TT-TCTTTTTTTCTC
26657230 TTTCTTTT
1 TTTCTTTT
26657238 CATTTTGGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 6 0.18
16 6 0.18
17 8 0.24
18 2 0.06
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTCTTTTTTTCTC
Found at i:26667106 original size:102 final size:102
Alignment explanation
Indices: 26666920--26667152 Score: 378
Period size: 102 Copynumber: 2.3 Consensus size: 102
26666910 TTATCCGTTA
* * * *
26666920 TCGGTGGATTCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAA
1 TCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAA
* * *
26666985 CCACCAATGATTCGTGGAATCAGTACTTAGCAACCCC
66 CCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
*
26667022 TCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATTAGCACTTAGCAA
1 TCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAA
26667087 CCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
66 CCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
*
26667124 T-TGGGGAATCAGCACTTAGCAACCCCCTT
1 TCGGGGGAATCAGCACTTAGCAACCCCCTT
26667153 TATATTCAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 27 0.22
102 95 0.78
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (102 bp):
TCGGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAA
CCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCC
Found at i:26667129 original size:26 final size:26
Alignment explanation
Indices: 26667100--26667149 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
26667090 CCAATGAGTC
26667100 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
26667126 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
26667150 CTTTATATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTT
Found at i:26667253 original size:51 final size:51
Alignment explanation
Indices: 26667167--26667367 Score: 255
Period size: 51 Copynumber: 4.0 Consensus size: 51
26667157 TTCAAAGATA
* * *
26667167 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
* * *
26667218 CCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCA-AAGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTAT
* * * *
26667269 CCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTAT
* *
26667319 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGTCCATCACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
26667368 TTCACTTTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 4 0.03
50 40 0.31
51 81 0.64
52 1 0.01
53 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
Found at i:26667351 original size:101 final size:101
Alignment explanation
Indices: 26667158--26667358 Score: 316
Period size: 101 Copynumber: 2.0 Consensus size: 101
26667148 CCCTTTATAT
* *
26667158 TCAAAGATACCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGAT
1 TCAAAGATACCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGAT
26667223 ACACGTAGTAGCCTGCACATAGTACTACACACGTGA
66 ACACGTAGTAGCCTGCACATAGTACTACACACGTGA
* * *
26667259 TCAAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTG
1 TCAAAGATA-CCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCG
*
26667322 GTACACGTAGTAGCCTGCACATAGTACTACACACGTG
64 ATACACGTAGTAGCCTGCACATAGTACTACACACGTG
26667359 TCCATCACTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
101 47 0.51
102 41 0.45
103 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (101 bp):
TCAAAGATACCGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGAT
ACACGTAGTAGCCTGCACATAGTACTACACACGTGA
Found at i:26670928 original size:26 final size:26
Alignment explanation
Indices: 26670894--26670953 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
26670884 ATAAGTGAGC
*
26670894 CTTTGTGGCTATCTCTAAATAAACAT
1 CTTTATGGCTATCTCTAAATAAACAT
* ** *
26670920 CTTTATGGCTATCTCTGAATGGACGT
1 CTTTATGGCTATCTCTAAATAAACAT
26670946 CTTTATGG
1 CTTTATGG
26670954 TGATCTATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (26 bp):
CTTTATGGCTATCTCTAAATAAACAT
Found at i:26671084 original size:58 final size:58
Alignment explanation
Indices: 26670973--26671156 Score: 167
Period size: 58 Copynumber: 3.2 Consensus size: 58
26670963 TTATAAGGAA
* * *
26670973 GCCTTTGTGGCTATCTCAATTAAATGAAAGCCTATGTGGCAATCTC-TA-TTAAAATGAT
1 GCCTTTGTGGCTATCTTAATTAAATGAATGCCTTTGTGGC--TCTCTTAGTTAAAATGAT
* * * *
26671031 GCCTTTGTGGCTATCTTAGTTAAATGAATGCCTTTGAGGCTCTCTTAGGTAAAAGGAT
1 GCCTTTGTGGCTATCTTAATTAAATGAATGCCTTTGTGGCTCTCTTAGTTAAAATGAT
* * ** * * * * *
26671089 TCCTTTATTTCTATCTCTATTTAAA-GGATGTCTTTGTGGCTATCTTCGTTAAAATGAT
1 GCCTTTGTGGCTATCT-TAATTAAATGAATGCCTTTGTGGCTCTCTTAGTTAAAATGAT
*
26671147 GTCTTTGTGG
1 GCCTTTGTGG
26671157 TCATCTCTGT
Statistics
Matches: 99, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
56 4 0.04
57 2 0.02
58 86 0.87
59 7 0.07
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (58 bp):
GCCTTTGTGGCTATCTTAATTAAATGAATGCCTTTGTGGCTCTCTTAGTTAAAATGAT
Found at i:26671131 original size:29 final size:29
Alignment explanation
Indices: 26670957--26671133 Score: 117
Period size: 29 Copynumber: 6.0 Consensus size: 29
26670947 TTTATGGTGA
*
26670957 TCTATATTATAAGGAAGCCTTTGTGGCTATC
1 TCTAT-TTA-AAGGATGCCTTTGTGGCTATC
* * * * *
26670988 TC-AATTAAATGAAAGCCTATGTGGCAATC
1 TCTATTTAAA-GGATGCCTTTGTGGCTATC
* *
26671017 TCTATTAAAATGATGCCTTTGTGGCTATC
1 TCTATTTAAAGGATGCCTTTGTGGCTATC
* * * *
26671046 T-TAGTTAAATGAATGCCTTTGAGGCTCTC
1 TCTATTTAAA-GGATGCCTTTGTGGCTATC
* * * * **
26671075 T-TAGGTAAAAGGATTCCTTTATTTCTATC
1 TCTA-TTTAAAGGATGCCTTTGTGGCTATC
*
26671104 TCTATTTAAAGGATGTCTTTGTGGCTATC
1 TCTATTTAAAGGATGCCTTTGTGGCTATC
26671133 T
1 T
26671134 TCGTTAAAAT
Statistics
Matches: 109, Mismatches: 32, Indels: 12
0.71 0.21 0.08
Matches are distributed among these distances:
28 8 0.07
29 86 0.79
30 13 0.12
31 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (29 bp):
TCTATTTAAAGGATGCCTTTGTGGCTATC
Found at i:26671147 original size:29 final size:29
Alignment explanation
Indices: 26670975--26671156 Score: 122
Period size: 29 Copynumber: 6.3 Consensus size: 29
26670965 ATAAGGAAGC
* * * *
26670975 CTTTGTGGCTATCTCAATT-AAATGAAAGC
1 CTTTGTGGCTATCTTAGTTAAAATG-ATGT
* * *
26671004 CTATGTGGCAATCTCTA-TTAAAATGATGC
1 CTTTGTGGCTATCT-TAGTTAAAATGATGT
*
26671033 CTTTGTGGCTATCTTAGTT-AAATGAATGC
1 CTTTGTGGCTATCTTAGTTAAAATG-ATGT
* * * *
26671062 CTTTGAGGCTCTCTTAGGTAAAAGGAT-T
1 CTTTGTGGCTATCTTAGTTAAAATGATGT
* ** * *
26671090 CCTTTATTTCTATCTCTA-TTTAAAGGATGT
1 -CTTTGTGGCTATCT-TAGTTAAAATGATGT
*
26671120 CTTTGTGGCTATCTTCGTTAAAATGATGT
1 CTTTGTGGCTATCTTAGTTAAAATGATGT
26671149 CTTTGTGG
1 CTTTGTGG
26671157 TCATCTCTGT
Statistics
Matches: 120, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
28 8 0.07
29 99 0.82
30 13 0.11
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (29 bp):
CTTTGTGGCTATCTTAGTTAAAATGATGT
Found at i:26671177 original size:29 final size:28
Alignment explanation
Indices: 26671028--26671184 Score: 88
Period size: 29 Copynumber: 5.5 Consensus size: 28
26671018 CTATTAAAAT
* *
26671028 GATGCCTTTGTGGCTATCTTAGTTAAATG
1 GATGTCTTTGTGGCTATCTTCGTTAAA-G
* * * * * *
26671057 AATGCCTTTGAGGCTCTCTTAGGTAAAAG
1 GATGTCTTTGTGGCTATCTT-CGTTAAAG
* ** **
26671086 GAT-TCCTTTATTTCTATCTCTATTTAAAG
1 GATGT-CTTTGTGGCTATCT-TCGTTAAAG
*
26671115 GATGTCTTTGTGGCTATCTTCGTTAAAAT
1 GATGTCTTTGTGGCTATCTTCGTT-AAAG
26671144 GATGTCTTTGTGG-TCATC-TCTGTTAAAG
1 GATGTCTTTGTGGCT-ATCTTC-GTTAAAG
26671172 GAATGTC-TTGTGG
1 G-ATGTCTTTGTGG
26671185 AAACCTCTGC
Statistics
Matches: 98, Mismatches: 22, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
28 16 0.16
29 75 0.77
30 7 0.07
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (28 bp):
GATGTCTTTGTGGCTATCTTCGTTAAAG
Found at i:26675240 original size:11 final size:11
Alignment explanation
Indices: 26675203--26675264 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
26675193 ACAACCAAAA
* *
26675203 CACCACTATAT
1 CACCACCATAG
* *
26675214 CACCACAATAA
1 CACCACCATAG
*
26675225 AACCACCATAG
1 CACCACCATAG
* *
26675236 CACCACCACAC
1 CACCACCATAG
26675247 CACCACCATAG
1 CACCACCATAG
26675258 CACCACC
1 CACCACC
26675265 GTATCACTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 41 1.00
ACGTcount: A:0.40, C:0.47, G:0.03, T:0.10
Consensus pattern (11 bp):
CACCACCATAG
Found at i:26698065 original size:18 final size:18
Alignment explanation
Indices: 26697992--26698099 Score: 67
Period size: 19 Copynumber: 5.8 Consensus size: 18
26697982 ATTTTAGAGT
*
26697992 TTTTTTTTAATTTTTA-AC
1 TTTTTTTT-ATTTTTAGAA
26698010 TTTTTTATATATTCTTTAGAA
1 TTTTTT-T-TATT-TTTAGAA
** *
26698031 TTTTTTAGAATTTTTATAA
1 TTTTTT-TTATTTTTAGAA
*
26698050 TTTTTTTTATTTTTATAAA
1 TTTTTTTTATTTTTA-GAA
* *
26698069 TATTTTGTA-TTTTAGAA
1 TTTTTTTTATTTTTAGAA
* *
26698086 ATTATTTTATTTTT
1 TTTTTTTTATTTTT
26698100 TTTGTAATTT
Statistics
Matches: 70, Mismatches: 14, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
17 7 0.10
18 22 0.31
19 25 0.36
20 8 0.11
21 8 0.11
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTTTTTTATTTTTAGAA
Found at i:26699746 original size:3 final size:3
Alignment explanation
Indices: 26699738--26699765 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26699728 AAATTCACAT
26699738 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26699766 AGTTGATATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:26710543 original size:2 final size:2
Alignment explanation
Indices: 26710536--26710618 Score: 157
Period size: 2 Copynumber: 41.5 Consensus size: 2
26710526 CTAATGCATC
26710536 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
26710578 CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
26710619 CAGCCAATTT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:26717028 original size:58 final size:58
Alignment explanation
Indices: 26716904--26717138 Score: 201
Period size: 58 Copynumber: 4.1 Consensus size: 58
26716894 TTCAGATCCT
* * * * * *
26716904 GCCACGAAGGCATCCTTTTAA-AAAAATAGCCACAAA-GCATTCCTTTTAACAAAGATA
1 GCCACAAAGGCTTCCTTTTAACAGAGATAGCCATAAAGGCATT-CTTTTAACAGAGATA
* * *
26716961 GCTGA-AAAGGCTTCCTTTTAACAGATATAACCATAAAGGCATTCTTTTAACAGAGATCA
1 GC-CACAAAGGCTTCCTTTTAACAGAGATAGCCATAAAGGCATTCTTTTAACAGAGAT-A
** * * *
26717020 -CCACAAAGGCTTCCTTAAAACAAAGATAGCCATAAAGACATTCATTTAACAGAGATA
1 GCCACAAAGGCTTCCTTTTAACAGAGATAGCCATAAAGGCATTCTTTTAACAGAGATA
* * ** * * * *
26717077 GCTATAAAAACATCCTTTTAACAGAGATAGCCATAGAGGCA-TCATTTTAACTGATATA
1 GCCACAAAGGCTTCCTTTTAACAGAGATAGCCATAAAGGCATTC-TTTTAACAGAGATA
26717135 GCCA
1 GCCA
26717139 TAAATACTTA
Statistics
Matches: 141, Mismatches: 30, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
57 20 0.14
58 115 0.82
59 6 0.04
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (58 bp):
GCCACAAAGGCTTCCTTTTAACAGAGATAGCCATAAAGGCATTCTTTTAACAGAGATA
Found at i:26717070 original size:29 final size:29
Alignment explanation
Indices: 26716910--26717142 Score: 174
Period size: 29 Copynumber: 8.1 Consensus size: 29
26716900 TCCTGCCACG
* * * *
26716910 AAGGCATCCTTTTAA-AAAAATAGCCACA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
* *
26716938 AA-GCATTCCTTTTAACAAAGATAGCTGA-A
1 AAGGCATT-CTTTTAACAGAGATAGC-CATA
* *
26716967 AAGGC-TTCCTTTTAACAGATATAACCATA
1 AAGGCATT-CTTTTAACAGAGATAGCCATA
*
26716996 AAGGCATTCTTTTAACAGAGATCA-CCACA
1 AAGGCATTCTTTTAACAGAGAT-AGCCATA
** *
26717025 AAGGC-TTCCTTAAAACAAAGATAGCCATA
1 AAGGCATT-CTTTTAACAGAGATAGCCATA
* * *
26717054 AAGACATTCATTTAACAGAGATAGCTATA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
** *
26717083 AAAACATCCTTTTAACAGAGATAGCCATA
1 AAGGCATTCTTTTAACAGAGATAGCCATA
* * *
26717112 GAGGCA-TCATTTTAACTGATATAGCCATA
1 AAGGCATTC-TTTTAACAGAGATAGCCATA
26717141 AA
1 AA
26717143 TACTTATTTA
Statistics
Matches: 164, Mismatches: 30, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
27 4 0.02
28 14 0.09
29 138 0.84
30 8 0.05
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (29 bp):
AAGGCATTCTTTTAACAGAGATAGCCATA
Found at i:26720943 original size:14 final size:15
Alignment explanation
Indices: 26720918--26720946 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26720908 AATTAATCAA
26720918 ATTTTAATAAAAAAT
1 ATTTTAATAAAAAAT
26720933 ATTTT-ATAAAAAAT
1 ATTTTAATAAAAAAT
26720947 TCTTAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAATAAAAAAT
Found at i:26724278 original size:24 final size:24
Alignment explanation
Indices: 26724234--26724280 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26724224 TTTATTTTTA
*
26724234 AAATAATTAATTTTATTTAATATT
1 AAATAATTAATTTTATCTAATATT
26724258 AAATAATTATATTTTA-CTAATAT
1 AAATAATTA-ATTTTATCTAATAT
26724281 CATATTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
AAATAATTAATTTTATCTAATATT
Found at i:26727407 original size:2 final size:2
Alignment explanation
Indices: 26727400--26727426 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26727390 CTTGTCAAGA
26727400 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
26727427 TTATGCCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:26727875 original size:48 final size:48
Alignment explanation
Indices: 26727817--26727911 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
26727807 ACAGTAAATT
* *
26727817 TTTTCGAAGTCTAAAAATTATTAAAAATCAGAAATATATATAAAAAAA
1 TTTTCAAAGTCTAAAAATTATTAAAAATCAGAAAAATATATAAAAAAA
*
26727865 TTTTCAAAGTCTAAAAGTTATTAAAAATCAGAAAAATATATAAAAAA
1 TTTTCAAAGTCTAAAAATTATTAAAAATCAGAAAAATATATAAAAAA
26727912 TATATATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (48 bp):
TTTTCAAAGTCTAAAAATTATTAAAAATCAGAAAAATATATAAAAAAA
Found at i:26728045 original size:120 final size:120
Alignment explanation
Indices: 26727912--26728433 Score: 839
Period size: 120 Copynumber: 4.3 Consensus size: 120
26727902 ATATAAAAAA
* ** * *
26727912 TATATATTTTTATTAACTTATATTTAATAATAATTATTTTAAATTATATTTTATACTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATA
* *
26727977 TTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
66 TTATAATTTTAGTAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAAT
* * *
26728032 TATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATACTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATA
*
26728097 TTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
66 TTATAATTTTAGTAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAAT
* *
26728152 CATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTTTATAGTATCATAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATACTATCATAT
*
26728216 ATTATAATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
65 ATTATAATTTTAGTAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAAT
* *
26728272 CATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATA
* * * * *
26728337 TTATGATTTGAGTAAAATAATATAAGAATATTGATTATTAAGAATTTTATTAAAT
66 TTATAATTTTAGTAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAAT
26728392 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAA
26728434 TATATGATTA
Statistics
Matches: 385, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
119 2 0.01
120 381 0.99
121 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATA
TTATAATTTTAGTAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAAT
Found at i:26728397 original size:61 final size:59
Alignment explanation
Indices: 26727969--26728399 Score: 223
Period size: 61 Copynumber: 7.2 Consensus size: 59
26727959 ATTTTATACT
* *
26727969 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTAT-ATTTTAGTAAATTAATATAAGAATA-TTATTATTAAGAATTTTATTAA
* * * * * *
26728030 A-T-TATA-TAT-TTTTATTAAATTATATTTAATAATAATTATGT-TAAATTATATTTTA-TACT
1 ATTATATATTATATTTTAGTAAATTA-ATATAAGAAT-ATTAT-TATTAA-GA-ATTTTATTA-A
* *
26728089 ATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAA
1 ATTATATATTAT-ATTTTAGTAAATTAATATAAGAATA-TTATTATTAAGAATTTTATTAA
* * * * * * * *
26728150 ATCATATATTTTA-ATTA--AAA-TATATTTAATAATAATTATT-TCAAATTATATTTTA-TAGT
1 ATTATATATTATATTTTAGTAAATTA-ATATAAGAAT-ATTATTAT-TAA-GA-ATTTTATTA-A
* *
26728209 ATCATATATTATAATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATATATTAT-ATTTTAGTAAATTAATATAAGAATATT-ATTATTAAGAATTTTATTAA
* * * * * * * *
26728270 ATCATATATTTTA-ATTA--AAA-TATATTTAATAATAATTATGT-TAAATTATATTTTA-TAGT
1 ATTATATATTATATTTTAGTAAATTA-ATATAAGAAT-ATTAT-TATTAA-GA-ATTTTATTA-A
* * *
26728329 ATCATATATTATGATTTGAGTAAAATAATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATTATATATTAT-ATTTTAGTAAATTAATATAAGAATATT-ATTATTAAGAATTTTATTAA
26728390 ATTATATATT
1 ATTATATATT
26728400 TTAATTAAAA
Statistics
Matches: 277, Mismatches: 51, Indels: 84
0.67 0.12 0.20
Matches are distributed among these distances:
56 14 0.05
57 47 0.17
58 19 0.07
59 51 0.18
60 6 0.02
61 58 0.21
62 21 0.08
63 46 0.17
64 15 0.05
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (59 bp):
ATTATATATTATATTTTAGTAAATTAATATAAGAATATTATTATTAAGAATTTTATTAA
Found at i:26728408 original size:18 final size:17
Alignment explanation
Indices: 26728380--26728414 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26728370 ATTATTAAGA
*
26728380 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26728397 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26728415 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26735272 original size:6 final size:6
Alignment explanation
Indices: 26735261--26735305 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
26735251 TAAAAAATAG
* *
26735261 AAAATT AAAATT AAAATT AAAATT --AATT AGAATA AAAATT AAAAT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAAT
26735306 CTGTAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
4 4 0.12
6 30 0.88
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:26735288 original size:22 final size:22
Alignment explanation
Indices: 26735263--26735305 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26735253 AAAAATAGAA
*
26735263 AATTAAAATTAAAATTAAAATT
1 AATTAAAATAAAAATTAAAATT
*
26735285 AATTAGAATAAAAATTAAAAT
1 AATTAAAATAAAAATTAAAAT
26735306 CTGTAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AATTAAAATAAAAATTAAAATT
Found at i:26735298 original size:16 final size:16
Alignment explanation
Indices: 26735254--26735302 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
26735244 TAAAATATAA
26735254 AAAATAGAAAATTAAAATT
1 AAAATA-AAAATT--AATT
*
26735273 AAAATTAAAATTAATT
1 AAAATAAAAATTAATT
*
26735289 AGAATAAAAATTAA
1 AAAATAAAAATTAA
26735303 AATCTGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 16 0.59
18 6 0.22
19 5 0.19
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (16 bp):
AAAATAAAAATTAATT
Found at i:26747358 original size:13 final size:13
Alignment explanation
Indices: 26747340--26747364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26747330 CAAGAAACTC
26747340 AATTTCTACAAAG
1 AATTTCTACAAAG
26747353 AATTTCTACAAA
1 AATTTCTACAAA
26747365 AATACTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
AATTTCTACAAAG
Found at i:26748801 original size:126 final size:125
Alignment explanation
Indices: 26748582--26749007 Score: 536
Period size: 126 Copynumber: 3.4 Consensus size: 125
26748572 ATGATTTATC
* * * * * *
26748582 AGAAGGATTTTTGAAGTCGCGCTCACGTGAACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAA
1 AGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAA
* * *
26748647 TTTTGAGTTGACGTTTCTGAGTAAATAGTATAAAACAACGCTGCAAGCAGGATTCTATTTG
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAA-GCTGCAAGCAGGATGCTATTTG
* * *
26748708 AGAAGAATTTGTGAAATCGTGTCCACGTGGACGCACTTTTACTACAGTAGGTCTTGAAAAAATAA
1 AGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAA
* * *
26748773 TTTCGAGTTGACGTTTCGGAGCAGATAGTATAAAATAAAGCTGCAAGCAGGATGCTATTTG
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-CAAGCTGCAAGCAGGATGCTATTTG
* * * *
26748834 AGAAGAATTTGTGAAATTGTGCCCTA-GTGGACGCGCTTTTGTTACAGTAGGTCCTGGAAAAATA
1 AGAAGAATTTGTGAAATCGTGCCC-ACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATA
* * * * *
26748898 ATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATC-A-CTTCTACCAGAATGCT-TTATG
65 ATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-CAAGCTGCAAGCAGGATGCTATT-TG
* * *
26748958 AGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGTAG
1 AGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAG
26749008 CATGTTTGGG
Statistics
Matches: 262, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
123 3 0.01
124 58 0.22
125 1 0.00
126 197 0.75
127 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
AGAAGAATTTGTGAAATCGTGCCCACGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAA
TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAAGCTGCAAGCAGGATGCTATTTG
Found at i:26752082 original size:53 final size:53
Alignment explanation
Indices: 26752015--26752118 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
26752005 ATATTTTTTC
* * *
26752015 AATTATTAATTGATAATTGTATTAATTGTTAGTAAAATTATCAAATTATATCA
1 AATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTAGCAAATTATATCA
26752068 AATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTAGCAAATTATAT
1 AATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTAGCAAATTATAT
26752119 TTAAGTTAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (53 bp):
AATTATTAACTGATAATTGTATTAATGGTTAGTAAAATTAGCAAATTATATCA
Found at i:26752233 original size:43 final size:42
Alignment explanation
Indices: 26752118--26752395 Score: 315
Period size: 43 Copynumber: 6.5 Consensus size: 42
26752108 GCAAATTATA
* * * *
26752118 TTTAAGTTAAGGGTTAGGGTTTTTTATTTAAGGGTTACGGTT
1 TTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
* * * ** *
26752160 TTAAAGTT-GGGTTTAGGATTTTTATTTTAAGGGTTATGGTT
1 TTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
26752201 TTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
1 TTTAAGTT-AAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
* *
26752244 TTTAAGTTAAGGATTTATGATTTTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGG-TTTAGGGTTTTTAAGTTAAGGG-TTAAGGTT
* * * *
26752288 TTTAAGTTACGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGG-TTAAGGTT
* * * *
26752331 TTTAAGTTAATGATTTAGGGTTTTTAATTTAAAGGTTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
26752374 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTT
26752396 AGGGTTTTTA
Statistics
Matches: 201, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
41 34 0.17
42 11 0.05
43 118 0.59
44 38 0.19
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (42 bp):
TTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
Found at i:26752271 original size:65 final size:65
Alignment explanation
Indices: 26752118--26752395 Score: 323
Period size: 65 Copynumber: 4.3 Consensus size: 65
26752108 GCAAATTATA
* * * * * * *
26752118 TTTAAGTTAAGGG-TTAGGGTTTTTTA-TTTAAGGGTTACGGTTTTAAAGTT--GGGTTTAGGAT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGT
26752179 T
65 T
** *
26752180 TTTATTTTAAGGG-TTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * * * *
26752244 TTTAAGTTAAGGATTTATGATTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTTACGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
* * * * *
26752309 TTTAGGTTAAGGGTTTATGGTTTTTAAGTTAATGATTTAGGGTTTTTAATTTAAAGGTTAGGGTT
1 TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
*
26752374 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTATGGTT
26752396 AGGGTTTTTA
Statistics
Matches: 183, Mismatches: 29, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
62 22 0.12
63 20 0.11
64 16 0.09
65 125 0.68
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (65 bp):
TTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTT
Found at i:26752386 original size:15 final size:15
Alignment explanation
Indices: 26752363--26752417 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
26752353 TTTAATTTAA
26752363 AGGTT-AGGGTTTTT
1 AGGTTAAGGGTTTTT
*
26752377 AAGTTAAGGG--TTT
1 AGGTTAAGGGTTTTT
26752390 AGGGTT-AGGGTTTTT
1 A-GGTTAAGGGTTTTT
26752405 AGGTTAAGGGTTT
1 AGGTTAAGGGTTT
26752418 AATTGTCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 8 0.24
14 11 0.32
15 15 0.44
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (15 bp):
AGGTTAAGGGTTTTT
Found at i:26752393 original size:22 final size:22
Alignment explanation
Indices: 26752118--26752395 Score: 311
Period size: 22 Copynumber: 13.0 Consensus size: 22
26752108 GCAAATTATA
26752118 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
26752139 TTTTATTTAAGGG-TTACGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26752160 TTAAAGTT--GGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
** *
26752180 TTTATTTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26752201 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26752223 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
26752244 TTTAAGTTAAGGATTTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26752266 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
26752288 TTTAAGTTACGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26752309 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26752331 TTTAAGTTAATGATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
26752353 TTTAATTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26752374 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
26752396 AGGGTTTTTA
Statistics
Matches: 211, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
19 3 0.01
20 11 0.05
21 95 0.45
22 102 0.48
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:26752397 original size:28 final size:28
Alignment explanation
Indices: 26752364--26752418 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
26752354 TTAATTTAAA
26752364 GGTTAGGGTTTTTAAGTTAAGGGTTTAG
1 GGTTAGGGTTTTTAAGTTAAGGGTTTAG
*
26752392 GGTTAGGGTTTTTAGGTTAAGGGTTTA
1 GGTTAGGGTTTTTAAGTTAAGGGTTTA
26752419 ATTGTCAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (28 bp):
GGTTAGGGTTTTTAAGTTAAGGGTTTAG
Found at i:26752685 original size:21 final size:21
Alignment explanation
Indices: 26752661--26752709 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
26752651 CTTTGTCCAG
26752661 CTTCCGGCGGCGG-TTGTGGTT
1 CTTCCGGCGG-GGATTGTGGTT
* *
26752682 CTTCTGGCGGGGATTTTGGTT
1 CTTCCGGCGGGGATTGTGGTT
26752703 CTTCCGG
1 CTTCCGG
26752710 TAGGACATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.02, C:0.22, G:0.39, T:0.37
Consensus pattern (21 bp):
CTTCCGGCGGGGATTGTGGTT
Found at i:26752991 original size:18 final size:18
Alignment explanation
Indices: 26752965--26753007 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26752955 AACTCGAAAA
* *
26752965 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
26752983 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
26753001 AGGAAAC
1 AGGAAAC
26753008 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:26754884 original size:11 final size:11
Alignment explanation
Indices: 26754870--26754946 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
26754860 TTATATATGG
26754870 ATTTGAGAGAA
1 ATTTGAGAGAA
*
26754881 ATTTG-GAAGGA
1 ATTTGAG-AGAA
26754892 ATTTGAGAGTAA
1 ATTTGAGAG-AA
26754904 A-TTGAGAGGAA
1 ATTTGAGA-GAA
26754915 ATTT-AGAGGAA
1 ATTTGAGA-GAA
*
26754926 A-ATGAGATGAA
1 ATTTGAGA-GAA
26754937 ATTTGAGAGA
1 ATTTGAGAGA
26754947 GGATTAATTT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
10 2 0.04
11 41 0.76
12 11 0.20
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:26754932 original size:33 final size:35
Alignment explanation
Indices: 26754870--26754945 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 35
26754860 TTATATATGG
* **
26754870 ATTTGAGA-GAAATTTGGAAGGAATTTGAGA-GTAA
1 ATTTGAGAGGAAATTTAGAAGGAAAATGAGATG-AA
26754904 A-TTGAGAGGAAATTTAG-AGGAAAATGAGATGAA
1 ATTTGAGAGGAAATTTAGAAGGAAAATGAGATGAA
26754937 ATTTGAGAG
1 ATTTGAGAG
26754946 AGGATTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
33 19 0.53
34 17 0.47
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.26
Consensus pattern (35 bp):
ATTTGAGAGGAAATTTAGAAGGAAAATGAGATGAA
Found at i:26755168 original size:40 final size:40
Alignment explanation
Indices: 26755124--26755200 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
26755114 ACATGGACAC
* * *
26755124 AAATCGCGCTTACGTGGACGCGATTTGCTGCCACGTCAAA
1 AAATCGCGCTGACGTGAACGCGATTTGCTGACACGTCAAA
*
26755164 AAATCGCGCTGACGTGAACGCTATTTGCTGACACGTC
1 AAATCGCGCTGACGTGAACGCGATTTGCTGACACGTC
26755201 CCTTGACATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
AAATCGCGCTGACGTGAACGCGATTTGCTGACACGTCAAA
Found at i:26756350 original size:17 final size:18
Alignment explanation
Indices: 26756309--26756350 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
26756299 ATTCATTCGA
*
26756309 AGAATATATAAAAAAACTT
1 AGAA-ATATAAAAAAAATT
26756328 AAGAAATATAAAAAAAATT
1 -AGAAATATAAAAAAAATT
26756347 -GAAA
1 AGAAA
26756351 ACCCTACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
19 13 0.62
20 4 0.19
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.21
Consensus pattern (18 bp):
AGAAATATAAAAAAAATT
Found at i:26757374 original size:25 final size:24
Alignment explanation
Indices: 26757340--26757393 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 24
26757330 ATTTTATATC
*
26757340 AATATTTATAATAATATTAAATAA
1 AATAATTATAATAATATTAAATAA
26757364 ATATAATTATAATAATATTAAATAA
1 A-ATAATTATAATAATATTAAATAA
26757389 AATAA
1 AATAA
26757394 AAATCCGCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
AATAATTATAATAATATTAAATAA
Found at i:26758255 original size:21 final size:21
Alignment explanation
Indices: 26758216--26758257 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26758206 ATATAACATG
***
26758216 GGTGCTTAAAATTTTATTTTT
1 GGTGCTTAAAATGAAATTTTT
26758237 GGTGCTTAAAATGAAATTTTT
1 GGTGCTTAAAATGAAATTTTT
26758258 TGATAATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.50
Consensus pattern (21 bp):
GGTGCTTAAAATGAAATTTTT
Found at i:26758882 original size:32 final size:31
Alignment explanation
Indices: 26758800--26758889 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 31
26758790 GTCTGTTATG
* * * *
26758800 GTGAAGCCTTGTTGTTAGGCGACACCACTTTG
1 GTGAAGCC-TCTTGATAGGCGACACCACTCTA
*
26758832 GTGAAGCCTCTCTAATAGGCGACACCACTCTA
1 GTGAAGCCTCT-TGATAGGCGACACCACTCTA
*
26758864 GTGAAGCCTCCTTGATAGGCAACACC
1 GTGAAGCCT-CTTGATAGGCGACACC
26758890 GGTGTCAACC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
31 2 0.04
32 45 0.92
33 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (31 bp):
GTGAAGCCTCTTGATAGGCGACACCACTCTA
Found at i:26759479 original size:13 final size:13
Alignment explanation
Indices: 26759463--26759487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26759453 TTTTTTTATT
26759463 TATTTTTGTAAGG
1 TATTTTTGTAAGG
26759476 TATTTTTGTAAG
1 TATTTTTGTAAG
26759488 AAATATAGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
TATTTTTGTAAGG
Found at i:26759902 original size:26 final size:26
Alignment explanation
Indices: 26759873--26759961 Score: 162
Period size: 26 Copynumber: 3.5 Consensus size: 26
26759863 ATTATATATT
26759873 AAATATATATTTTTTTATTTTTAATC
1 AAATATATATTTTTTTATTTTTAATC
*
26759899 AAATATATATATTTTTATTTTTAATC
1 AAATATATATTTTTTTATTTTTAATC
26759925 AAATATATA-TTTTTTATTTTTAATC
1 AAATATATATTTTTTTATTTTTAATC
26759950 AAATATATATTT
1 AAATATATATTT
26759962 AATATATATT
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
25 24 0.40
26 36 0.60
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (26 bp):
AAATATATATTTTTTTATTTTTAATC
Found at i:26759967 original size:11 final size:11
Alignment explanation
Indices: 26759951--26759987 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
26759941 TTTTTAATCA
26759951 AATATATATTT
1 AATATATATTT
26759962 AATATATA-TT
1 AATATATATTT
26759972 AATATATATTT
1 AATATATATTT
26759983 AATAT
1 AATAT
26759988 GGGTCGGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
AATATATATTT
Found at i:26761467 original size:41 final size:41
Alignment explanation
Indices: 26761406--26761768 Score: 358
Period size: 41 Copynumber: 8.9 Consensus size: 41
26761396 TTCTTACCTT
* * * * *
26761406 TCGGGGCTTTAGCAGTGTTTTCGAAAAAGCGCCGCTAATAC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * *
26761447 TCGGGGTTTTAGTGGCGTTTTTTAAAATGCACCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * ** *
26761488 TCGAGGTTTTAGTGGCGTTTTTGGAAAATTGCCGCTAATTC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * **
26761529 TCGGTGTTTTAGCGACATTTTTTCAAAAGCGCCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
**
26761570 -CTGGGGTTTTAGCGGCGTTTTTGAAAATTCGCCGCT-ATGC
1 TC-GGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * * * *
26761610 TGGGGGCTTTAACGACATTTTTGATAAAGCGCCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
26761651 TC--GGTGTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
26761690 TCGGGGTTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATAC
1 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
26761731 T-GGAGGCTTTAGCGGTGTTTTTGAAAATGCGCCGCTAA
1 TCGG-GGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
26761769 AAACATTTTA
Statistics
Matches: 259, Mismatches: 57, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
39 32 0.12
40 34 0.13
41 193 0.75
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:26761766 original size:161 final size:162
Alignment explanation
Indices: 26761408--26761767 Score: 411
Period size: 161 Copynumber: 2.2 Consensus size: 162
26761398 CTTACCTTTC
* * * * ** * * *
26761408 GGGGCTTTAGCAGTGTTTTCGAAAAAGCGCCGCTAATACTCGGGGTTTTAGTGGCGTTTTTTAAA
1 GGGGCTTTAGCGGTGTTTTTGAAAATGCGCCGCT-ATACTCGGGGCTTTAACGACATTTTTGAAA
* * * ** * *
26761473 ATGCACCGCTAATGCTCGAGGTTTTAGTGGCGTTTTTGGAAAATTGCCGCTAATTCTCGGTGTTT
65 ATGCACCGCTAATGCTC-AGGTGTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGTTT
** *
26761538 TAGCGACATTTTTTCAAAAGCGCCGCTAATGCCT
129 TAGCGACATTTTTAAAAAAGCGCCGCTAATGACT
* * * * *
26761572 GGGGTTTTAGCGGCGTTTTTGAAAATTCGCCGCTATGCTGGGGGCTTTAACGACATTTTTGATAA
1 GGGGCTTTAGCGGTGTTTTTGAAAATGCGCCGCTATACTCGGGGCTTTAACGACATTTTTGA-AA
* *
26761637 A-GCGCCGCTAATGCTC-GGTGTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGGGGTTTT
65 ATGCACCGCTAATGCTCAGGTGTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGTTTT
* *
26761700 AGCGGCGTTTTTAAAAAAGCGCCGCTAAT-ACT
130 AGCGACATTTTTAAAAAAGCGCCGCTAATGACT
26761732 GGAGGCTTTAGCGGTGTTTTTGAAAATGCGCCGCTA
1 GG-GGCTTTAGCGGTGTTTTTGAAAATGCGCCGCTA
26761768 AAAACATTTT
Statistics
Matches: 163, Mismatches: 31, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
160 4 0.02
161 94 0.58
163 34 0.21
164 31 0.19
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.33
Consensus pattern (162 bp):
GGGGCTTTAGCGGTGTTTTTGAAAATGCGCCGCTATACTCGGGGCTTTAACGACATTTTTGAAAA
TGCACCGCTAATGCTCAGGTGTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGGTTTTA
GCGACATTTTTAAAAAAGCGCCGCTAATGACT
Found at i:26762161 original size:14 final size:14
Alignment explanation
Indices: 26762142--26762168 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26762132 AAGTATGGAT
26762142 TTAGGGATTATGGG
1 TTAGGGATTATGGG
26762156 TTAGGGATTATGG
1 TTAGGGATTATGG
26762169 TTTAAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (14 bp):
TTAGGGATTATGGG
Found at i:26762178 original size:21 final size:22
Alignment explanation
Indices: 26762138--26762202 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
26762128 TAGGAAGTAT
* * *
26762138 GGATTTAGGGATTATGGGTTAG
1 GGATTTAAGGTTTAAGGGTTAG
*
26762160 GGA-TTATGGTTTAAGGGTT-G
1 GGATTTAAGGTTTAAGGGTTAG
*
26762180 GGATTTAAGGTTTATGGGTTAG
1 GGATTTAAGGTTTAAGGGTTAG
26762202 G
1 G
26762203 TGTTTAGTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 4 0.11
21 27 0.75
22 5 0.14
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.38
Consensus pattern (22 bp):
GGATTTAAGGTTTAAGGGTTAG
Found at i:26762480 original size:14 final size:15
Alignment explanation
Indices: 26762428--26762518 Score: 91
Period size: 15 Copynumber: 6.3 Consensus size: 15
26762418 CATATTTTAA
*
26762428 GATTTAGGGAGTATG
1 GATTTAGGGATTATG
* *
26762443 GATTTAAGGAGTATG
1 GATTTAGGGATTATG
*
26762458 AATTTAGGGATTATG
1 GATTTAGGGATTATG
26762473 GA-TTAGGGATTATG
1 GATTTAGGGATTATG
26762487 G-TTTAAGGG-TT-TG
1 GATTT-AGGGATTATG
* *
26762500 GATTTAAGGTTTATG
1 GATTTAGGGATTATG
26762515 GATT
1 GATT
26762519 AGAGGTTAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
13 6 0.09
14 22 0.34
15 37 0.57
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
GATTTAGGGATTATG
Found at i:26762549 original size:15 final size:15
Alignment explanation
Indices: 26762499--26762566 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
26762489 TTAAGGGTTT
*
26762499 GGATTTAAGGTTTAT
1 GGATTTAAGGTTTAG
26762514 GGA-TTAGAGG-TTAG
1 GGATTTA-AGGTTTAG
*
26762528 GG-GTTAAGAG-TTAG
1 GGATTTAAG-GTTTAG
26762542 GGATTTAAGGTTTAG
1 GGATTTAAGGTTTAG
*
26762557 GGATTCAAGG
1 GGATTTAAGG
26762567 ATCGGGTTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
13 2 0.04
14 19 0.42
15 24 0.53
ACGTcount: A:0.28, C:0.01, G:0.37, T:0.34
Consensus pattern (15 bp):
GGATTTAAGGTTTAG
Found at i:26762617 original size:304 final size:304
Alignment explanation
Indices: 26762068--26762659 Score: 901
Period size: 304 Copynumber: 1.9 Consensus size: 304
26762058 GGGTTTTTGA
* * *
26762068 TTTAGGGTATATGATTTATTTAAGATTTAAGGCCGGTTTAGGAGTTACTATTTTAAGGTGTAGGA
1 TTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTACTATTTTAAGATGTAGGA
* * * * *
26762133 AGTATGGATTTAGGGATTATGGGTTAGGGATTATGGTTTAAGGGTTGGGATTTAAGGTTTATGGG
66 AGTATGGATTTAAGGAGTATGAGTTAGGGATTATGGATTAAGGGTTGGGATTTAAGGGTTATGGG
* *
26762198 TTAGGTGTTTAGTGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAGGGTTTAGGAATTCAGAG
131 TTAAGTGTTTAGTGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGAATTCAGAG
*
26762263 GTCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGTTCTTAT
196 GTCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGCTCTTAT
26762328 ATAATTGTAAAAGAGATAATAATAAATTTCTTTACGATTTTTAG
261 ATAATTGTAAAAGAGATAATAATAAATTTCTTTACGATTTTTAG
*
26762372 TTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTT-CATATTTTAAGATTTAGG
1 TTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTAC-TATTTTAAGATGTAGG
* * *
26762436 GAGTATGGATTTAAGGAGTATGAATTTAGGGATTATGGATT-AGGGATTATGG-TTTAAGGGTT-
65 AAGTATGGATTTAAGGAGTATG-AGTTAGGGATTATGGATTAAGGG-TT-GGGATTTAAGGGTTA
* * *
26762498 TGGATTTAAG-GTTTA-TGGATTAGAGGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGGAT
127 TGG-GTTAAGTGTTTAGTGG-TTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGAAT
*
26762561 TCA-AGGATCGGGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATG
190 TCAGAGG-TCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATG
26762625 CTCTTATATAATTGTAAAAGAGATAATAATAAATT
254 CTCTTATATAATTGTAAAAGAGATAATAATAAATT
26762660 AAATATATTG
Statistics
Matches: 262, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
303 7 0.03
304 223 0.85
305 30 0.11
306 2 0.01
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.42
Consensus pattern (304 bp):
TTTAGGGTATATAATTAATTTAAGATTTAAGGCCGGTTTAGGAGTTACTATTTTAAGATGTAGGA
AGTATGGATTTAAGGAGTATGAGTTAGGGATTATGGATTAAGGGTTGGGATTTAAGGGTTATGGG
TTAAGTGTTTAGTGGTTAGACGTTAGGGGTTAAGAGTTAGGGATTTAAGGTTTAGGAATTCAGAG
GTCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTTAATTTATATTTTAAATATGCTCTTAT
ATAATTGTAAAAGAGATAATAATAAATTTCTTTACGATTTTTAG
Found at i:26764556 original size:47 final size:47
Alignment explanation
Indices: 26764482--26764572 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
26764472 TACTAGCTCG
*
26764482 TTTTAGCTCACTGAAGCAAAGAGAAGAAGTGTGTATGTAAAATATTC
1 TTTTAGCTCACTGAAGCAAAGAGAAGAAGTGTGTATGGAAAATATTC
*
26764529 TTTTTGCTCACTGAAGCAAAGAGAAGAAGTGTGTATGGAAAATA
1 TTTTAGCTCACTGAAGCAAAGAGAAGAAGTGTGTATGGAAAATA
26764573 AGTTTAAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTTAGCTCACTGAAGCAAAGAGAAGAAGTGTGTATGGAAAATATTC
Found at i:26767754 original size:27 final size:27
Alignment explanation
Indices: 26767724--26767778 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
26767714 GCTAAAGGTT
26767724 ATGCTCTTTAGCGGCATTTGTGATAAA
1 ATGCTCTTTAGCGGCATTTGTGATAAA
* *
26767751 ATGCTCTTTAGTGGCGTTTGTGATAAA
1 ATGCTCTTTAGCGGCATTTGTGATAAA
26767778 A
1 A
26767779 ATGTTGCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (27 bp):
ATGCTCTTTAGCGGCATTTGTGATAAA
Found at i:26767819 original size:70 final size:70
Alignment explanation
Indices: 26767687--26767820 Score: 180
Period size: 70 Copynumber: 1.9 Consensus size: 70
26767677 GAACAGTACT
* * *
26767687 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTTATGCTCTTTAGCGGCATTTGTGATAAAA
1 TTTAGCGGCGTTTGTGATAAAAACGCCGCTAAAGATCATGCTCTTTAGCGGCATTTGTGATAAAA
26767752 TGCTC
66 TGCTC
* * ** *
26767757 TTTAGTGGCGTTTGTGATAAAAATGTTGCTAAAGATCATG-TCTTTAGCGGCGTTTGTGGATAAA
1 TTTAGCGGCGTTTGTGATAAAAACGCCGCTAAAGATCATGCTCTTTAGCGGCATTTGT-GATAAA
26767821 GCGCCGCTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 16 0.29
70 39 0.71
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.35
Consensus pattern (70 bp):
TTTAGCGGCGTTTGTGATAAAAACGCCGCTAAAGATCATGCTCTTTAGCGGCATTTGTGATAAAA
TGCTC
Found at i:26767844 original size:14 final size:14
Alignment explanation
Indices: 26767825--26767853 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26767815 GATAAAGCGC
26767825 CGCTAAAGGTCATG
1 CGCTAAAGGTCATG
26767839 CGCTAAAGGTCATG
1 CGCTAAAGGTCATG
26767853 C
1 C
26767854 TCTTTAGCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.21
Consensus pattern (14 bp):
CGCTAAAGGTCATG
Found at i:26767875 original size:56 final size:57
Alignment explanation
Indices: 26767784--26767896 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 57
26767774 TAAAAATGTT
*
26767784 GCTAAAGATCATGTCTTTAGCGGCGTTTGTGGAT-AAAGCGCCGCTAAAGGTCATGC
1 GCTAAAGATCATGTCTTTAGCGGCATTTGTGGATAAAAGCGCCGCTAAAGGTCATGC
* *
26767840 GCTAAAGGTCATGCTCTTTAGCGGCATTTGT-GATAAAAGCTCCGCTAAAGGTCATGC
1 GCTAAAGATCATG-TCTTTAGCGGCATTTGTGGATAAAAGCGCCGCTAAAGGTCATGC
26767897 TCTTTAGTGG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
56 15 0.29
57 37 0.71
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (57 bp):
GCTAAAGATCATGTCTTTAGCGGCATTTGTGGATAAAAGCGCCGCTAAAGGTCATGC
Found at i:26767956 original size:42 final size:43
Alignment explanation
Indices: 26767839--26767996 Score: 207
Period size: 43 Copynumber: 3.7 Consensus size: 43
26767829 AAAGGTCATG
*
26767839 CGCTAAAGGTCATGCTCTTTAGCGGCATTTGTGATAAAAGCT-C
1 CGCTAAAGGTCATGCTCTTTAGCGGCGTTTGTGATAAAAG-TGC
*
26767882 CGCTAAAGGTCATGCTCTTTAGTGGCGTTTGTGATAAAAGTGC
1 CGCTAAAGGTCATGCTCTTTAGCGGCGTTTGTGATAAAAGTGC
* * *
26767925 TGCTAAAGATCATG-TCTTTAGCGGCGTTTGTGGAT-AAAGCGC
1 CGCTAAAGGTCATGCTCTTTAGCGGCGTTTGT-GATAAAAGTGC
*
26767967 CGCTAAAGGTCATG-TTTTATAGCGGCGTTT
1 CGCTAAAGGTCATGCTCTT-TAGCGGCGTTT
26767997 TTTCACATTA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 38 0.37
43 65 0.63
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
CGCTAAAGGTCATGCTCTTTAGCGGCGTTTGTGATAAAAGTGC
Found at i:26767994 original size:85 final size:86
Alignment explanation
Indices: 26767840--26767996 Score: 230
Period size: 85 Copynumber: 1.8 Consensus size: 86
26767830 AAGGTCATGC
* * *
26767840 GCTAAAGGTCATGCTCTTTAGCGGCATTTGTGATAAAAGCTCCGCTAAAGGTCATGCTCTTTAGT
1 GCTAAAGATCATGCTCTTTAGCGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGCTCTTTAGC
26767905 GGCGTTTGTGATAAAAGTGCT
66 GGCGTTTGTGATAAAAGTGCT
* *
26767926 GCTAAAGATCATG-TCTTTAGCGGCGTTTGTGGAT-AAAGCGCCGCTAAAGGTCATG-TTTTATA
1 GCTAAAGATCATGCTCTTTAGCGGCATTTGT-GATAAAAGCGCCGCTAAAGGTCATGCTCTT-TA
26767988 GCGGCGTTT
64 GCGGCGTTT
26767997 TTTCACATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
84 3 0.05
85 46 0.72
86 15 0.23
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (86 bp):
GCTAAAGATCATGCTCTTTAGCGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGCTCTTTAGC
GGCGTTTGTGATAAAAGTGCT
Found at i:26769974 original size:29 final size:27
Alignment explanation
Indices: 26769941--26769995 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
26769931 GTGATTAAAT
26769941 AAAATCGACA-CAAGCAGAATTTAAAAGAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAA
*
26769970 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
26769996 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 2 0.08
29 10 0.42
30 4 0.17
ACGTcount: A:0.60, C:0.11, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:26773042 original size:48 final size:48
Alignment explanation
Indices: 26772978--26773083 Score: 149
Period size: 48 Copynumber: 2.2 Consensus size: 48
26772968 TAATGTAATC
* * * *
26772978 CAATGTATGTAATTTATATTACAAAGTTTGTTCTTTATTTTAATGTTG
1 CAATGAATCTAATTTATATTACAAAGTTTGTTCCTCATTTTAATGTTG
* *
26773026 CAATTAATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTG
1 CAATGAATCTAATTTATATTACAAAGTTTGTTCCTCATTTTAATGTTG
*
26773074 TAATGAATCT
1 CAATGAATCT
26773084 CAAATAAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.49
Consensus pattern (48 bp):
CAATGAATCTAATTTATATTACAAAGTTTGTTCCTCATTTTAATGTTG
Found at i:26776963 original size:43 final size:43
Alignment explanation
Indices: 26776900--26777064 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 43
26776890 TACCGTAACA
* * * * *
26776900 ATGCC-ATATCCCAGATATGGTCTTACATGTACTCTCGTATTG
1 ATGCCAATAGCCCAGACATGGTCTTACATGAAATCTCATATTG
* * *
26776942 ATGCCAATAGCCCAGCCATGGTCTTACACGAAATCACATATTG
1 ATGCCAATAGCCCAGACATGGTCTTACATGAAATCTCATATTG
* *
26776985 ATGCCAA-ATGTCCCAGACATGGTCTTACATGAATTCTCATATCG
1 ATGCCAATA-G-CCCAGACATGGTCTTACATGAAATCTCATATTG
* * * * *
26777029 ATGCC-ATATCTCAAATATGGTCTTACATGTAATCTC
1 ATGCCAATAGCCCAGACATGGTCTTACATGAAATCTC
26777065 GGTAACCCTA
Statistics
Matches: 100, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.28
43 38 0.38
44 34 0.34
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGCCAATAGCCCAGACATGGTCTTACATGAAATCTCATATTG
Found at i:26777012 original size:44 final size:45
Alignment explanation
Indices: 26776908--26777064 Score: 155
Period size: 44 Copynumber: 3.6 Consensus size: 45
26776898 CAATGCCATA
* * * *
26776908 TCCCAGATATGGTCTTACATGTACTCTCGTATTGATGCC-AATAG
1 TCCCAGACATGGTCTTACATGAAATCTCATATTGATGCCAAATAG
* * *
26776952 -CCCAGCCATGGTCTTACACGAAATCACATATTGATGCCAAAT-G
1 TCCCAGACATGGTCTTACATGAAATCTCATATTGATGCCAAATAG
* *
26776995 TCCCAGACATGGTCTTACATGAATTCTCATATCGATGCC--ATA-
1 TCCCAGACATGGTCTTACATGAAATCTCATATTGATGCCAAATAG
* * * *
26777037 TCTCAAATATGGTCTTACATGTAATCTC
1 TCCCAGACATGGTCTTACATGAAATCTC
26777065 GGTAACCCTA
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 25 0.27
43 32 0.34
44 36 0.39
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (45 bp):
TCCCAGACATGGTCTTACATGAAATCTCATATTGATGCCAAATAG
Found at i:26783960 original size:21 final size:23
Alignment explanation
Indices: 26783934--26783981 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
26783924 AAATTTATCA
*
26783934 ATTTAA-GTTTTAAAA-CCAATG
1 ATTTAAGGTTTTAAAATCCAAAG
26783955 ATTTAAGTGTTTTAAAATCCAAAG
1 ATTTAAG-GTTTTAAAATCCAAAG
26783979 ATT
1 ATT
26783982 ATGCATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
23 9 0.39
24 8 0.35
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (23 bp):
ATTTAAGGTTTTAAAATCCAAAG
Found at i:26784312 original size:199 final size:199
Alignment explanation
Indices: 26784072--26784465 Score: 666
Period size: 199 Copynumber: 2.0 Consensus size: 199
26784062 ACAATCCCAA
*
26784072 AAGAGTTTTAAAAACTTTATTTTAAAATGAATCTGAGAATCTCCTCCAATTGT-TGCATCCAAGT
1 AAGAGTTTTAAAAACTTTATTTTAAAATAAATCTGAGAATCTCCTCCAATT-TCTGCATCCAAGT
* *
26784136 TCTATCCTTGAGTGTTATCTGAAAAGTTTTAAGAAAACT-AAAGCAGTGAGCTAATATGCCCAGT
65 CCTATCATTGAGTGTTATCTGAAAAGTTTTAAGAAAACTAAAAG-AGTGAGCTAATATGCCCAGT
* * *
26784200 GTGAATTTTATATCAAGCTTAAATAAAATAAGAAATTAGTTTAGATGAAACAAAAATATTATTAA
129 GCGAATTTTACATCAAGCTTAAATAAAATAAGAAATTAGTTTAGATAAAACAAAAATATTATTAA
26784265 GCACAT
194 GCACAT
* * *
26784271 AAGAGTTTTAAATACTTTATTTTAAAATAAATTTGAGAATCTCCTCCAATTTCTGTATCCAAGTC
1 AAGAGTTTTAAAAACTTTATTTTAAAATAAATCTGAGAATCTCCTCCAATTTCTGCATCCAAGTC
*
26784336 CTATCATTGAGTGTTATCTGAAAAGTTTTAAGAAAACTAAAAGAGTGAGCTAATATGCCTAGTGC
66 CTATCATTGAGTGTTATCTGAAAAGTTTTAAGAAAACTAAAAGAGTGAGCTAATATGCCCAGTGC
26784401 GAATTTTACATCAAGCTTAAATAAAATAAGAAATTAGTTTAGATAAAACAAAAATATTATTAAGC
131 GAATTTTACATCAAGCTTAAATAAAATAAGAAATTAGTTTAGATAAAACAAAAATATTATTAAGC
26784466 TGTGCATGAT
Statistics
Matches: 183, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
198 1 0.01
199 178 0.97
200 4 0.02
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (199 bp):
AAGAGTTTTAAAAACTTTATTTTAAAATAAATCTGAGAATCTCCTCCAATTTCTGCATCCAAGTC
CTATCATTGAGTGTTATCTGAAAAGTTTTAAGAAAACTAAAAGAGTGAGCTAATATGCCCAGTGC
GAATTTTACATCAAGCTTAAATAAAATAAGAAATTAGTTTAGATAAAACAAAAATATTATTAAGC
ACAT
Found at i:26792398 original size:100 final size:100
Alignment explanation
Indices: 26792225--26792733 Score: 748
Period size: 100 Copynumber: 5.1 Consensus size: 100
26792215 AACTTTTGGA
** * * * *
26792225 AAGTAAGATTCGCCCTTGTAGCTTCAATCTTATTAACTGCAATGTCGGGGAAGCAAGATTTGTCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
26792290 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * * * * *
26792325 AAGTAAGATTCGCCGTTGTAGCTTCAATTTTTTTAATTGCAATGTCGGGGAAGCATGATTCGCCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
*
26792390 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
** * *
26792425 AAGTAAGATTCATTGTTGTAGCTTTAATCTTTTTAACTGCAATGCCGGGGAAGCAAGATTTGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
* *
26792490 TTGTGGCTTTAATCTGTTCCACCGCACCGCTTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* * *
26792525 AAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCGACG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
* *
26792590 TTGTGGCTTTAGTCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
* ** * *
26792625 AAGTAAGATACGCTGTTGTAGCTTTAATCTTTTTAACTATAATGTCGGGGAAGCAAGATTCACTG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
*
26792690 TTGTGGCTTTAATCTGTTCCACTGCATCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
26792725 AAGTAAGAT
1 AAGTAAGAT
26792734 CTGTAATTTT
Statistics
Matches: 367, Mismatches: 42, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 367 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCG
TTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGG
Found at i:26792726 original size:50 final size:50
Alignment explanation
Indices: 26792272--26792733 Score: 317
Period size: 50 Copynumber: 9.2 Consensus size: 50
26792262 TGCAATGTCG
** *
26792272 GGGAAGCAAGATT-TGTCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGCAAGATTCACT-GTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
* * * * * * * ** * * *
26792322 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATTTTTTTAATTGCAAT-GTCG
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGC-ATCGCCT
* * ** * *
26792372 GGGAAGCATGATTCGCCATTGTGGCTTTAATCTGTTCCACTACACCGCCT
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
* * * * ** *
26792422 GGGAAGTAAGATTCATTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GCCG
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGC-ATCGCCT
** * * * *
26792472 GGGAAGCAAGATTTGCCGTTGTGGCTTTAATCTGTTCCACCGCACCGCTT
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
* * * ** *
26792522 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GTC-
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGC-ATCGCCT
* * *
26792571 GAGGAAGCAAGATTCGAC-GTTGTGGCTTTAGTCTGTTCCACTACACCGCCT
1 G-GGAAGCAAGATTC-ACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
* * * * * ** ** * *
26792622 GGGAAGTAAGATACGCTGTTGTAGCTTTAATCTTTTTAACTATAAT-GTCG
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACT-GCATCGCCT
26792672 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
1 GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
*
26792722 GGGAAGTAAGAT
1 GGGAAGCAAGAT
26792734 CTGTAATTTT
Statistics
Matches: 299, Mismatches: 100, Indels: 26
0.70 0.24 0.06
Matches are distributed among these distances:
49 7 0.02
50 285 0.95
51 7 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (50 bp):
GGGAAGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCATCGCCT
Found at i:26792928 original size:131 final size:131
Alignment explanation
Indices: 26792788--26793622 Score: 1375
Period size: 131 Copynumber: 6.4 Consensus size: 131
26792778 TTACAACCTT
* * * *
26792788 CAACTTATTCCACTGCTCACTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGG
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
* * * * *
26792853 GAAAGATATGATTTGCCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAATTT
66 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
26792918 C
131 C
* * *
26792919 CAACCTATTCCACT-CTTAACCAGGGAGATAGGACTTGTGGCTTAAATTTTCTTCCCTACTCCTG
1 CAACCTATTCCACTGC-TGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTG
*
26792983 GGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
65 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
26793048 TC
130 TC
26793050 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
* * *
26793115 GGAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGGGATAATATCTGTAATTT
66 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
26793180 C
131 C
* * * *
26793181 CAACCTATTCCACCGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCTTAG
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
* * * *
26793246 GGAAGATAATATTTGCCGTCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTT
66 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
26793311 C
131 C
26793312 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
* * * *
26793377 GGAAGATAAGATTCGTCGTCTTGGACCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTT
66 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
26793442 C
131 C
26793443 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
* *
26793508 GGAAGATAAGATTCGCCGTCTTCCATCTGCTCCACTACTGCTTAGGGAGATAAGAGCTGTAATTT
66 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
26793573 C
131 C
*
26793574 CAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCT
1 CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCT
26793623 TCCCCAAATA
Statistics
Matches: 657, Mismatches: 45, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
130 1 0.00
131 655 1.00
132 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (131 bp):
CAACCTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCTGG
GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTT
C
Found at i:26794828 original size:27 final size:25
Alignment explanation
Indices: 26794798--26794873 Score: 62
Period size: 26 Copynumber: 2.9 Consensus size: 25
26794788 CGCCTTGGCC
26794798 TTTCCTTTTCTTTTTTCTTTTTGTCAT
1 TTTCCTTTT-TTTTTTCTTTTT-TCAT
* * ** *
26794825 TTTCATTTTAATTTTGATTTTTTGAT
1 TTTCCTTTT-TTTTTTCTTTTTTCAT
*
26794851 TTTTCTTTTTTTCTTTCTTTTTT
1 TTTCCTTTTTTT-TTTCTTTTTT
26794874 GGTTTTTTCA
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
25 2 0.05
26 18 0.49
27 17 0.46
ACGTcount: A:0.08, C:0.12, G:0.04, T:0.76
Consensus pattern (25 bp):
TTTCCTTTTTTTTTTCTTTTTTCAT
Found at i:26794853 original size:7 final size:8
Alignment explanation
Indices: 26794836--26794928 Score: 57
Period size: 8 Copynumber: 11.5 Consensus size: 8
26794826 TTCATTTTAA
26794836 TTTTGATT
1 TTTTGATT
26794844 TTTTGATT
1 TTTTGATT
**
26794852 TTTCTTTTT
1 TTT-TGATT
**
26794861 TTCTTTCTT
1 TT-TTGATT
*
26794870 TTTTGGTT
1 TTTTGATT
*
26794878 TTTTCATT
1 TTTTGATT
26794886 TTTTGATT
1 TTTTGATT
*
26794894 TTGTT-TTT
1 TT-TTGATT
26794902 TTATTGATT
1 TT-TTGATT
*
26794911 TTTT--TA
1 TTTTGATT
26794917 TTTTGATT
1 TTTTGATT
26794925 TTTT
1 TTTT
26794929 TTATTTCGAT
Statistics
Matches: 66, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
6 5 0.08
8 43 0.65
9 17 0.26
10 1 0.02
ACGTcount: A:0.09, C:0.04, G:0.09, T:0.78
Consensus pattern (8 bp):
TTTTGATT
Found at i:26794902 original size:13 final size:13
Alignment explanation
Indices: 26794878--26794928 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
26794868 TTTTTTGGTT
*
26794878 TTTTCATTTTTTGA
1 TTTTGATTTTTT-A
26794892 TTTTG-TTTTTT-
1 TTTTGATTTTTTA
*
26794903 TATTGATTTTTTTA
1 TTTTGA-TTTTTTA
26794917 TTTTGATTTTTT
1 TTTTGATTTTTT
26794929 TTATTTCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 4 0.13
13 18 0.58
14 9 0.29
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (13 bp):
TTTTGATTTTTTA
Found at i:26794920 original size:17 final size:16
Alignment explanation
Indices: 26794836--26794934 Score: 78
Period size: 16 Copynumber: 6.1 Consensus size: 16
26794826 TTCATTTTAA
*
26794836 TTTTGATTTTTTGATT
1 TTTTGATTTTTTTATT
** *
26794852 TTTCTTTTTTTCTTTCTT
1 TTT-TGATTTT-TTTATT
* *
26794870 TTTTGGTTTTTTCATT
1 TTTTGATTTTTTTATT
26794886 TTTTGATTTTGTTT-TT
1 TTTTGATTTT-TTTATT
26794902 TTATTGATTTTTTTA--
1 TT-TTGATTTTTTTATT
26794917 TTTTGATTTTTTTTATT
1 TTTTGA-TTTTTTTATT
26794934 T
1 T
26794935 CGATTGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
14 4 0.06
15 10 0.15
16 23 0.35
17 21 0.32
18 7 0.11
ACGTcount: A:0.09, C:0.04, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTGATTTTTTTATT
Found at i:26794928 original size:14 final size:14
Alignment explanation
Indices: 26794830--26794939 Score: 70
Period size: 14 Copynumber: 8.0 Consensus size: 14
26794820 GTCATTTTCA
*
26794830 TTTTAATTTTGATT
1 TTTTTATTTTGATT
* **
26794844 TTTTGATTTTTCTT
1 TTTTTATTTTGATT
*
26794858 TTTTTCTTTCT--TT
1 TTTTTATTT-TGATT
*
26794871 TTTGGTT-TTTTCATT
1 TTT--TTATTTTGATT
*
26794886 TTTTGATTTTG-TT
1 TTTTTATTTTGATT
26794899 TTTTTA--TTGATT
1 TTTTTATTTTGATT
26794911 TTTTTATTTTGATTT
1 TTTTTATTTTGA-TT
*
26794926 TTTTTATTTCGATT
1 TTTTTATTTTGATT
26794940 GTGAATTTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
11 3 0.04
12 8 0.10
13 14 0.18
14 31 0.40
15 21 0.27
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (14 bp):
TTTTTATTTTGATT
Found at i:26794928 original size:15 final size:15
Alignment explanation
Indices: 26794886--26794939 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
26794876 TTTTTTCATT
*
26794886 TTTTGATTTTGTTTTT
1 TTTTGATTTT-TTTTA
26794902 TTATTGA-TTTTTTTA
1 TT-TTGATTTTTTTTA
26794917 TTTTGATTTTTTTTA
1 TTTTGATTTTTTTTA
*
26794932 TTTCGATT
1 TTTTGATT
26794940 GTGAATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 4 0.12
15 21 0.62
16 5 0.15
17 4 0.12
ACGTcount: A:0.13, C:0.02, G:0.09, T:0.76
Consensus pattern (15 bp):
TTTTGATTTTTTTTA
Found at i:26794964 original size:20 final size:22
Alignment explanation
Indices: 26794922--26794964 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26794912 TTTTATTTTG
* *
26794922 ATTTTTTTTATTTCGATTGTGA
1 ATTTTTTTTATTTCGAATCTGA
26794944 ATTTTTTTTA-TT-GAATCTGA
1 ATTTTTTTTATTTCGAATCTGA
26794964 A
1 A
26794965 CTCATAGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (22 bp):
ATTTTTTTTATTTCGAATCTGA
Found at i:26801991 original size:42 final size:44
Alignment explanation
Indices: 26801896--26801997 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 44
26801886 GTGTTTCAAG
* * *
26801896 TCAGTGAGTTACATGGCCTAGCACACACGGGCATGTGTGGCAACA
1 TCAGTGAGTTACACGACCTAG-ACACACGGGCATGTGGGGCAACA
* * *
26801941 T-AGAGAGTTACACGACCTAG-CACACGGGCGTGTGGGGTAAC-
1 TCAGTGAGTTACACGACCTAGACACACGGGCATGTGGGGCAACA
26801982 TCAGTGAGTTACACGA
1 TCAGTGAGTTACACGA
26801998 GTGAAGATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
41 1 0.02
42 31 0.63
44 16 0.33
45 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (44 bp):
TCAGTGAGTTACACGACCTAGACACACGGGCATGTGGGGCAACA
Done.