Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 86 of 185
Found at i:26802665 original size:21 final size:21
Alignment explanation
Indices: 26802631--26802670 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26802621 TGAAGTTGAT
* * *
26802631 TTAATGCTTTGTGTGAACATG
1 TTAATGCCTAGTGTAAACATG
26802652 TTAATGCCTAGTGTAAACA
1 TTAATGCCTAGTGTAAACA
26802671 CCATTAGGGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (21 bp):
TTAATGCCTAGTGTAAACATG
Found at i:26804326 original size:18 final size:18
Alignment explanation
Indices: 26804303--26804337 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26804293 GAAATTGTGA
26804303 AAAGAGAAAAATGAAAAG
1 AAAGAGAAAAATGAAAAG
* *
26804321 AAAGAGGAAATTGAAAA
1 AAAGAGAAAAATGAAAA
26804338 AAAAAAGAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.09
Consensus pattern (18 bp):
AAAGAGAAAAATGAAAAG
Found at i:26820902 original size:17 final size:17
Alignment explanation
Indices: 26820880--26820914 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26820870 ATATAGTGTT
26820880 AAAAATAT-TATTTTAAA
1 AAAAATATAT-TTTTAAA
26820897 AAAAATATATTTTTAAA
1 AAAAATATATTTTTAAA
26820914 A
1 A
26820915 TTTTTAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAAATATATTTTTAAA
Found at i:26821772 original size:31 final size:32
Alignment explanation
Indices: 26821737--26821797 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
26821727 AAAATGAATC
26821737 TAGACAATAATTTG-TCCTG-TTCATTTTAATT
1 TAGACAATAATTTGTTCC-GATTCATTTTAATT
*
26821768 TAGACAATCATTTGTTCCGATTCATTTTAA
1 TAGACAATAATTTGTTCCGATTCATTTTAA
26821798 ATGCATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.46
Consensus pattern (32 bp):
TAGACAATAATTTGTTCCGATTCATTTTAATT
Found at i:26822101 original size:7 final size:7
Alignment explanation
Indices: 26822089--26822119 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
26822079 AAATTATAAA
26822089 AAATATT
1 AAATATT
26822096 AAATATT
1 AAATATT
26822103 AAATATT
1 AAATATT
26822110 AAATATT
1 AAATATT
26822117 AAA
1 AAA
26822120 AAATAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAATATT
Found at i:26822161 original size:9 final size:9
Alignment explanation
Indices: 26822078--26822258 Score: 78
Period size: 9 Copynumber: 20.4 Consensus size: 9
26822068 AAAATCATAA
*
26822078 AAAATTATA
1 AAAATTATT
*
26822087 AAAAATATT
1 AAAATTATT
26822096 -AAA-TATT
1 AAAATTATT
26822103 -AAA-TATT
1 AAAATTATT
26822110 -AAA-TATT
1 AAAATTATT
*
26822117 AAAA--AAT
1 AAAATTATT
*
26822124 AAAATAAATT
1 AAAAT-TATT
*
26822134 AAAATTGACAT
1 AAAATT-A-TT
*
26822145 AAACTTATT
1 AAAATTATT
26822154 AAAATTATAT
1 AAAATTAT-T
*
26822164 AATATTA-T
1 AAAATTATT
26822172 AAATATTA-T
1 AAA-ATTATT
26822181 AAAATTA-T
1 AAAATTATT
*
26822189 AAAATAATAT
1 AAAATTAT-T
*
26822199 AAAATTAAT
1 AAAATTATT
26822208 AAAATTTATTT
1 AAAA-TTA-TT
**
26822219 AAAATTAAA
1 AAAATTATT
**
26822228 AAAATTAAA
1 AAAATTATT
**
26822237 AAAATTAAA
1 AAAATTATT
26822246 AAAATTATT
1 AAAATTATT
26822255 AAAA
1 AAAA
26822259 AATAAAAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
7 24 0.17
8 20 0.14
9 57 0.40
10 29 0.21
11 11 0.08
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.35
Consensus pattern (9 bp):
AAAATTATT
Found at i:26822171 original size:19 final size:17
Alignment explanation
Indices: 26822133--26822213 Score: 74
Period size: 19 Copynumber: 4.4 Consensus size: 17
26822123 TAAAATAAAT
*
26822133 TAAAATTGACATAAACTTA
1 TAAAATT-ATATAAA-TTA
26822152 TTAAAATTATATAATATTA
1 -TAAAATTATATAA-ATTA
26822171 TAAATATTATA-AAATTA
1 TAAA-ATTATATAAATTA
*
26822188 TAAAATAATATAAAATTAA
1 TAAAATTATAT-AAATT-A
26822207 TAAAATT
1 TAAAATT
26822214 TATTTAAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
16 5 0.09
17 8 0.15
18 11 0.21
19 21 0.40
20 8 0.15
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (17 bp):
TAAAATTATATAAATTA
Found at i:26822183 original size:27 final size:27
Alignment explanation
Indices: 26822143--26822304 Score: 95
Period size: 27 Copynumber: 5.9 Consensus size: 27
26822133 TAAAATTGAC
* * * *
26822143 ATAAACTTATTAAAATTATATAATATT
1 ATAAAATTAATAAAATTATAAAATAAT
26822170 ATAAATATT-ATAAAATTATAAAATAAT
1 ATAAA-ATTAATAAAATTATAAAATAAT
26822197 ATAAAATTAATAAAATTTATTTAAAATTAA-
1 ATAAAATTAATAAAA-TTA--TAAAA-TAAT
*
26822227 A-AAAATTAAAAAAATTA-AAAA-AATT
1 ATAAAATTAATAAAATTATAAAATAA-T
* *
26822252 ATTAAAAAATAA-AAAATTTATTAAAATTGAT
1 A-T-AAAATTAATAAAA-TTA-TAAAA-TAAT
* *
26822283 ATAAACTT-AGAAAATTATAAAA
1 ATAAAATTAATAAAATTATAAAA
26822305 AAAAAAGATC
Statistics
Matches: 109, Mismatches: 9, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
23 2 0.02
25 5 0.05
26 3 0.03
27 40 0.37
28 22 0.20
29 20 0.18
30 11 0.10
31 5 0.05
32 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (27 bp):
ATAAAATTAATAAAATTATAAAATAAT
Found at i:26822203 original size:65 final size:63
Alignment explanation
Indices: 26822109--26822303 Score: 154
Period size: 65 Copynumber: 3.1 Consensus size: 63
26822099 TATTAAATAT
* *
26822109 TAAATATTAAAAA--ATAAAATAA-ATTAAAATTGACAT-AAACTTA-TTAAAATTATATAATAT
1 TAAATATTAAAAATTATAAAATAATA-TAAAATT-A-ATAAAACTTATTTAAAATTA-AAAAAAT
26822169 TA
62 TA
*
26822171 TAAATATTATAAAATTATAAAATAATATAAAATTAATAAAATTTATTTAAAATTAAAAAAATTA
1 TAAATATTA-AAAATTATAAAATAATATAAAATTAATAAAACTTATTTAAAATTAAAAAAATTA
* * * * * * *
26822235 AAAAAATTAAAAAAATTATTAAAA-AATAAAAAATTTATTAAAA-TTGATATAAACTT-AGAAAA
1 TAAATATT--AAAAATTA-TAAAATAATATAAAA-TTAATAAAACTT-ATTTAAAATTAAAAAAA
26822297 TTA
61 TTA
26822300 TAAA
1 TAAA
26822304 AAAAAAAGAT
Statistics
Matches: 111, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
62 9 0.08
63 6 0.05
64 20 0.18
65 53 0.48
66 23 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (63 bp):
TAAATATTAAAAATTATAAAATAATATAAAATTAATAAAACTTATTTAAAATTAAAAAAATTA
Found at i:26822230 original size:19 final size:19
Alignment explanation
Indices: 26822154--26822279 Score: 91
Period size: 18 Copynumber: 6.8 Consensus size: 19
26822144 TAAACTTATT
* * *
26822154 AAAATTATATAATATTATA
1 AAAATTATTTAAAATTAAA
* *
26822173 AATATTA--TAAAATT-AT
1 AAAATTATTTAAAATTAAA
* *
26822189 AAAATAATATAAAATTAATA
1 AAAATTATTTAAAATTAA-A
*
26822209 AAATTTATTTAAAATTAAA
1 AAAATTATTTAAAATTAAA
**
26822228 AAAATTA-AAAAAATTAAA
1 AAAATTATTTAAAATTAAA
* *
26822246 AAAATTATTAAAAAATAAA
1 AAAATTATTTAAAATTAAA
*
26822265 AAATTTA-TTAAAATT
1 AAAATTATTTAAAATT
26822280 GATATAAACT
Statistics
Matches: 84, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
16 5 0.06
17 6 0.07
18 29 0.35
19 29 0.35
20 15 0.18
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTATTTAAAATTAAA
Found at i:26822267 original size:9 final size:9
Alignment explanation
Indices: 26822219--26822267 Score: 73
Period size: 9 Copynumber: 5.3 Consensus size: 9
26822209 AAATTTATTT
26822219 AAAATTAAA
1 AAAATTAAA
26822228 AAAATTAAA
1 AAAATTAAA
26822237 AAAATTAAA
1 AAAATTAAA
26822246 AAAATTATTAA
1 AAAATTA--AA
26822257 AAAA-TAAA
1 AAAATTAAA
26822265 AAA
1 AAA
26822268 TTTATTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
8 5 0.13
9 25 0.66
10 2 0.05
11 6 0.16
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATTAAA
Found at i:26822278 original size:37 final size:38
Alignment explanation
Indices: 26822154--26822279 Score: 109
Period size: 37 Copynumber: 3.4 Consensus size: 38
26822144 TAAACTTATT
* * *
26822154 AAAATTATATAATATT-ATAAATATTA-TAAAATTATAAA
1 AAAATTA-ATAAAATTAATAAAAATTATTAAAA-AATAAA
* * * *
26822192 ATAA-T-ATAAAATTAATAAAATTTATTTAAAATTAAA
1 AAAATTAATAAAATTAATAAAAATTATTAAAAAATAAA
*
26822228 AAAATTAAAAAAATTAA-AAAAATTATTAAAAAATAAA
1 AAAATTAATAAAATTAATAAAAATTATTAAAAAATAAA
* *
26822265 AAATTTATTAAAATT
1 AAAATTAATAAAATT
26822280 GATATAAACT
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
35 7 0.10
36 15 0.22
37 35 0.51
38 12 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (38 bp):
AAAATTAATAAAATTAATAAAAATTATTAAAAAATAAA
Found at i:26822880 original size:24 final size:26
Alignment explanation
Indices: 26822850--26822897 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26822840 TAAATTATGT
26822850 TTTATTA-ATT-TTATATATTTTTAA
1 TTTATTAGATTCTTATATATTTTTAA
*
26822874 TTTATTAGATTCTTTTATATTTTT
1 TTTATTAGATTCTTATATATTTTT
26822898 TATAATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTATTAGATTCTTATATATTTTTAA
Found at i:26822906 original size:27 final size:28
Alignment explanation
Indices: 26822858--26822987 Score: 69
Period size: 26 Copynumber: 4.8 Consensus size: 28
26822848 GTTTTATTAA
*
26822858 TTTTATATATTTTTAATTTA-TTAG-AT
1 TTTTATATATTTTTAATATATTTAGAAT
*
26822884 TCTTT-TATATTTTTTATAATATTTAGAAT
1 T-TTTATATATTTTTAAT-ATATTTAGAAT
* * * **
26822913 TTTTATATGTTTATATTA-ATTTTCATAT
1 TTTTATATATTTTTAATATATTTAGA-AT
* * *
26822941 TTTTA-ATTTTTTTAATAT-TTAATAAT
1 TTTTATATATTTTTAATATATTTAGAAT
* *
26822967 TTGTATA-ATTTTTGAT-TATTT
1 TTTTATATATTTTTAATATATTT
26822988 TTTTCTGGTT
Statistics
Matches: 77, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
25 1 0.01
26 27 0.35
27 23 0.30
28 15 0.19
29 11 0.14
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTTATATATTTTTAATATATTTAGAAT
Found at i:26822968 original size:19 final size:19
Alignment explanation
Indices: 26822944--26822991 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
26822934 TTCATATTTT
26822944 TAATTTTTTTAATATTTAA
1 TAATTTTTTTAATATTTAA
* * * *
26822963 TAATTTGTATAATTTTTGA
1 TAATTTTTTTAATATTTAA
*
26822982 TTATTTTTTT
1 TAATTTTTTT
26822992 CTGGTTTATT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (19 bp):
TAATTTTTTTAATATTTAA
Found at i:26826731 original size:22 final size:22
Alignment explanation
Indices: 26826703--26826746 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
26826693 GTATGATTGT
*
26826703 ACATAGCCAAAGACGACTTTGA
1 ACATAGCCAAAGACGACGTTGA
26826725 ACATAGCCAAAGACGACGTTGA
1 ACATAGCCAAAGACGACGTTGA
26826747 GCTATTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (22 bp):
ACATAGCCAAAGACGACGTTGA
Found at i:26836653 original size:22 final size:20
Alignment explanation
Indices: 26836628--26836682 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
26836618 AAAAAAATTC
*
26836628 AACAAAAAGAAATATGAAATAT
1 AACAAAAAGAAA-AT-AAAAAT
*
26836650 AACATAAAGAAAATAAAAAT
1 AACAAAAAGAAAATAAAAAT
26836670 AA-AAATAAGAAAA
1 AACAAA-AAGAAAA
26836683 AAAGAAGAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 14 0.48
21 2 0.07
22 11 0.38
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.15
Consensus pattern (20 bp):
AACAAAAAGAAAATAAAAAT
Found at i:26848713 original size:486 final size:486
Alignment explanation
Indices: 26846750--26851516 Score: 6142
Period size: 516 Copynumber: 9.5 Consensus size: 486
26846740 AGAATCCATT
* * *
26846750 ATTTGTGCTGGATCTCGACCATCGAATTAATCTCTAATCACGATTCCCA-TTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
* ** * * *
26846814 ACGATAATTACTTTCCATTTTTATCTAAACCATTTGCTAAATTTATACAGGTTCTTTTTCCAATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
26846879 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
* * *
26846944 CATTTTAAATTTGCAACATTATCATATACATTCTATCCAACAACATACCATTCCCACGTCCATTC
196 CATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTC
* * *
26847009 AGTGTCATGAATCTCTTAATATTTATCAAGTATTTCTTATTTTACGAGTTGATCCATTTTATATA
261 AATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATA
26847074 AAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAAACACAATTAAAATATAA
326 AAAAGCCATTAAATCTACAATTATATATATTTAATATATATAC-AAAAACACAATTAAAATATAA
*
26847139 CACGAAAATGCA-ATAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCGGGGA
390 CACGAAAATGCAGA-AACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGA
* * *
26847203 CTAATCATCATAGATTGGTATATGATGATCTGA
454 CTAATCATCACAGATTGCTATATAATGATCTGA
*
26847236 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCAGGATTCCCATTTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
* *
26847301 ACCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
* * *
26847366 TCGGATCATTTCAAACTCTTTAATTGTATACACACATTAGTTTTTTTGAATAGCAATTCTCTATA
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
* *
26847431 CATTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCTCACATCCATTC
196 CATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTC
*
26847496 AATGTCATGAATCTCGTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATA
261 AATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATA
* *
26847561 AAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATAAAAT
326 AAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAC
* *
26847626 ACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGACAACTAGAAAGTTTCAGCGACT
391 ACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACT
*
26847691 AATCATCACAGATTGCTATATAATGATCCGA
456 AATCATCACAGATTGCTATATAATGATCTGA
* ** * *
26847722 TACTGCTCACTCGAGCTGTCGAGAATC-CATAAGTTGTGCTGGATCTCGACCATCGAAT-TAATC
1 -A-T--T---T-GTGC--T-G-G-ATCTC--AAG-CAT-C--GA-AT--A-AATC---TCTAATC
* * * * * * ** **
26847785 TCTAATCACGATTCCCATTTTTCCTTTTTATAATGATAATTACTTTCCATTTTTATCTAAACCAT
40 ACGATTC-CCATT----TTTTCCTTTTT-ATAACCATAACCACTTTCCATTTTTATCTAAACCAT
* * *
26847850 TTGCTAAATTCATACAGGTTCTTTTTCCAATTTTGTATCATTTCAAACTCTTTAATTGTATACAC
99 TTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACAC
* *
26847915 ACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATTATCATATACATTC
164 ACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGC
* * * *
26847980 TATCCTACAACATACCATTCCCACATCCATTCAGTGTCATGAATCTCTTCATATTTATCAGGTAG
229 TATCCAACAACATACCATTCCCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTAT
* * *
26848045 TTCTTATTTTACGAGTTGATCCATTTTATATAAAAAGCCATTAAATCTACAAGTACATATATTTA
294 TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTA
*
26848110 ATATATATACAAAAACACAATTAAAATAGAACACGAAAATGCA-ATAA-TTCCCATATGAACTTA
359 ATATATATACAAAAACACAATTAAAATATAACACGAAAATGCAGA-AACTT-CCATATGAACTTA
* * *
26848173 CCAAGAAAATGGCAACTAGAAAGTTTTAGGGACTAATCATCACAGATTGCTATATAATTATCTGA
422 CCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCTGA
26848238 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
* *
26848303 ACCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
* * * *
26848368 TTGTATCATTTCAAACTCTTTAATTGGATACACACATTAGTT-TTATTGAGTAGCAATTCTCTAT
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATT-TTGAATAACAATTCTCTAT
* *
26848432 ACATTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCTCACATCCATT
195 ACATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATT
26848497 CAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATAT
260 CAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATAT
* *
26848562 AAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAAAACAATTAAAATAAAA
325 AAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA
* * * *
26848627 TACGAAAATGCAGAAACTTCTATATGAACTTACCTAGAAAATGACAACTAGAAAGTTTCAGCGAC
390 CACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGAC
26848692 TAATCATCACAGATTGCTATATAATGATCCGACACTGCTCACTCGAGTTGTCGAGAATCCATA
455 TAATCATCACAGATTGC----T-AT-AT---A-A-TG---A-TC------T---G-------A
* * *
26848755 ATTTGTGCTGGATCTCGACCATCGAATTAATCTCTAATCACGATTCCCA-TTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
** ** * *
26848819 ATGATAATTACTTTCCATTTTTATCTAAACCATTTGCTAAATTCATACAGGTTCTTTTTCCAATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
*
26848884 TTGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
* * *
26848949 CATTTTAAATTTGCAACATTATCATATACATTCTATCCTACAACATACCATTCCCACATCCATTC
196 CATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTC
* * * *
26849014 AGTGTCATGAATCTCTTCATATTTATCAGGTAGTTCTTATTTTACGAGTTGATCCATTTTATATA
261 AATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATA
* * *
26849079 AAAAGCCATTAAATCTACAAGTACATATATTTAATATATATACAAAAACACAATTAAAATAGAAC
326 AAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAC
26849144 ACGAAAATGCA-ATAA-TTCCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGA
391 ACGAAAATGCAGA-AACTT-CCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGA
26849207 CTAATCATCACAGATTGCTATATAATGATCTGA
454 CTAATCATCACAGATTGCTATATAATGATCTGA
26849240 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
* *
26849305 ACCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
* * * *
26849370 TTGTATCATTTCAAACTCTTTAATTGGATACACACATTAGTT-TTATTGAGTAGCAATTCTCTAT
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATT-TTGAATAACAATTCTCTAT
* *
26849434 ACATTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCTCACATCCATT
195 ACATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATT
26849499 CAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATAT
260 CAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATAT
* *
26849564 AAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTGAAATAAAA
325 AAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA
** * **
26849629 TGCGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATAGCAACTAGAAAGTTTCAGCAAC
390 CACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGAC
*
26849694 TAATCATCACAGATTGCTATATAATGATCCGA
455 TAATCATCACAGATTGCTATATAATGATCTGA
* * *
26849726 TACTGCTCACTCGAGCTGTCGAGAATC-CATAATTTGTGC-TGGATCTCAACCATCGAAT-TAAT
1 -A-T--T---T-GTGC--T-G-G-ATCTC--AA-----GCATCGA-AT-AA--ATC---TCTAAT
* * * * * ** *
26849788 CTCTAATCACGATTCCCATTTTTCCTTTTTATAACGATAATTACTTTCCACTTTTATCTAAACCA
39 CACGATTC-CCATT----TTTT-CCTTTTTATAACCATAACCACTTTCCATTTTTATCTAAACCA
26849853 TTTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACA
98 TTTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACA
* * *
26849918 CACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGAAACATTATCATATACATT
163 CACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATG
* * *
26849983 CTATCCAACAACATACCATTCCCACATCGATTCAGTGTCATGAATCTCTTCATATTTATCAGGTA
228 CTATCCAACAACATACCATTCCCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTA
* *
26850048 GTTCTTATTTTACGAGTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTT
293 TTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTT
*
26850113 AATATATATACAAAAACACAATTAAAATATAACACGAAAATGCA-ATAACTCCCATATGAACTTA
358 AATATATATACAAAAACACAATTAAAATATAACACGAAAATGCAGA-AACTTCCATATGAACTTA
*
26850177 CCTAGAAAATGGCAACGAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCTGA
422 CCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCTGA
*
26850242 TTTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
1 ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
* *
26850307 ACCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGATT
66 ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
26850372 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT-TATTTGAA-AAGCAATTCTCTA
131 TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTAT-TTTGAATAA-CAATTCTCTA
* * *
26850435 TACATTTTAAATTTGCAACATCATCATATGCATGCTATCGAACAACATACCATTCTCACATCCAT
194 TACATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCAT
*
26850500 TCAATGTCATGAACCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATA
259 TCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATA
*
26850565 TAAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAACTAAAATATA
324 TAAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATA
* * * *
26850630 AGACGAAAATGCAGCAACTTCCATATGAACTTTCCTAGAAACTGGCAACTAGAAAGTTTCAGGGA
389 ACACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGA
*
26850695 CTAATCATCACAGATTGCTATATAATGATCCGA
454 CTAATCATCACAGATTGCTATATAATGATCTGA
* * * * * *
26850728 TACTGCTCACTCGAGCTGTCGAGAATC-CATAATTTGTGC-TGGATCTCAACCAT-TGAATAAAT
1 -A-T--T---T-GTGC--T-G-G-ATCTC--AA-----GCATCGA-ATAAATC-TCT-AAT-CA-
* * * * *
26850790 CTATAATCACGATTCCCATTTTTGCCTTTT-TATAACCATAACCACTTTCCCTTTTTATCTAAAC
41 CGAT--TC-CCATT----TT-TTCCTTTTTATA--ACCATAACCACTTTCCATTTTTATCTAAAC
* * *
26850854 CATTTGTTAAATTCATACAGGTTCGTTTACCCATTTCGTATCATTTCAAACTCCTTAATTGTATA
96 CATTTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATA
*
26850919 CACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAGTTGCAACATCATCATATACA
161 CACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACA
*
26850984 TGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATGAATCACTTCATATTTATCAAG
226 TGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAG
* * *
26851049 TATTTCTTATTTTACGATTTGAACCAGTTAATATAAAAAGCCATTAAATCTACAATTATATATAT
291 TATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATAT
* * *
26851114 TAAATATATATACAAAAACACAATTAAAATATAATACGAAAATGCAGAAACTTCCATATGAAGTT
356 TTAATATATATACAAAAACACAATTAAAATATAACACGAAAATGCAGAAACTTCCATATGAACTT
* * * * *
26851179 ACCTAGCAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCATAGATTGTTATATTATGATCCG
421 ACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCTG
26851244 A
486 A
* *
26851245 TACTGCTCACTCGAGCTGTCGAGAATACAT-AATTTGTGCTGGATCTCAACCATCGAATAAATCT
1 -A-T--T---T-GTGC--T-G-G-AT-C-TCAA-----GC---A--T----C-G--AATAAATCT
* ** *
26851309 CTAATCACGATTCCCA-TTTTTCCTTTTTATAACCATAATCACTTTTTATTGTTATCTAAACCAT
34 CTAATCACGATTCCCATTTTTTCCTTTTTATAACCATAACCACTTTCCATTTTTATCTAAACCAT
* *
26851373 TTGATAAATTCATACAGGTTCTTTTATCAATTTCGTATCATTTCAAACTCTTTAATTGTATACAC
99 TTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACAC
*
26851438 ACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATGCATGC
164 ACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGC
*
26851503 TATTCAACAACATA
229 TATCCAACAACATA
26851517 TGTAACACCC
Statistics
Matches: 3793, Mismatches: 313, Indels: 320
0.86 0.07 0.07
Matches are distributed among these distances:
485 54 0.01
486 1320 0.35
487 320 0.08
488 3 0.00
490 4 0.00
491 12 0.00
492 21 0.01
493 3 0.00
494 15 0.00
495 3 0.00
496 6 0.00
497 8 0.00
498 11 0.00
499 9 0.00
500 9 0.00
501 6 0.00
502 7 0.00
503 6 0.00
504 12 0.00
505 15 0.00
506 9 0.00
507 4 0.00
508 15 0.00
509 2 0.00
510 22 0.01
511 16 0.00
512 3 0.00
514 2 0.00
515 25 0.01
516 1339 0.35
517 484 0.13
518 8 0.00
522 1 0.00
523 3 0.00
524 2 0.00
526 3 0.00
527 1 0.00
528 4 0.00
529 5 0.00
530 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (486 bp):
ATTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATA
ACCATAACCACTTTCCATTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATT
TCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATA
CATTTTAAATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTC
AATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATA
AAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAC
ACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACT
AATCATCACAGATTGCTATATAATGATCTGA
Found at i:26851216 original size:517 final size:516
Alignment explanation
Indices: 26850243--26851516 Score: 2167
Period size: 517 Copynumber: 2.5 Consensus size: 516
26850233 ATGATCTGAT
*
26850243 TTTGTGCTGGATCTCAAGCATCGAATAAATCTCTAATCACGATTCCCATTTTTTCCTTTTTATAA
1 TTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTTCCTTTTTATAA
*
26850308 CCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGATTT
65 CCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTT
26850373 CGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT-TATTTGAA-AAGCAATTCTCTAT
130 CGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTAT-TTTGAATAA-CAATTCTCTAT
* *
26850436 ACATTTTAAATTTGCAACATCATCATATGCATGCTATCGAACAACATACCATTCTCACATCCATT
193 ACATTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCCCACATCCATT
* * * *
26850501 CAATGTCATGAACCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATAT
258 CAATGTCATGAACCACTTCATATTTATCAAGTATTTCTTATTTTACGATTTGAACCAGTTAATAT
*
26850566 AAAAAGCCATTAAATCTACAATTATATATATTTAATATATATACAAAAACACAACTAAAATATAA
323 AAAAAGCCATTAAATCTACAATTATATATATTAAATATATATACAAAAACACAACTAAAATATAA
* *
26850631 GACGAAAATGCAGCAACTTCCATATGAACTTTCCTAGAAACTGGCAACTAGAAAGTTTCAGGGAC
388 GACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAAACTGGCAACTAGAAAGTTTCAGGGAC
*
26850696 TAATCATCACAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAA
453 TAATCATCACAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATACATAA
* *
26850760 TTTGTGCTGGATCTCAACCATTGAATAAATCTATAATCACGATTCCCATTTTTGCCTTTTTATAA
1 TTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTT-CCTTTTTATAA
* * * *
26850825 CCATAACCACTTTCCCTTTTTATCTAAACCATTTGTTAAATTCATACAGGTTCGTTTACCCATTT
65 CCATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTT
*
26850890 CGTATCATTTCAAACTCCTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATAC
130 CGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATAC
* *
26850955 ATTTTAAAGTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCA
195 ATTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCCCACATCCATTCA
*
26851020 ATGTCATGAATCACTTCATATTTATCAAGTATTTCTTATTTTACGATTTGAACCAGTTAATATAA
260 ATGTCATGAACCACTTCATATTTATCAAGTATTTCTTATTTTACGATTTGAACCAGTTAATATAA
* *
26851085 AAAGCCATTAAATCTACAATTATATATATTAAATATATATACAAAAACACAATTAAAATATAATA
325 AAAGCCATTAAATCTACAATTATATATATTAAATATATATACAAAAACACAACTAAAATATAAGA
*
26851150 CGAAAATGCAGAAACTTCCATATGAAGTTACCTAGCAAA-TGGCAACTAGAAAGTTTCAGGGACT
390 CGAAAATGCAGAAACTTCCATATGAACTTACCTAG-AAACTGGCAACTAGAAAGTTTCAGGGACT
* * *
26851214 AATCATCATAGATTGTTATATTATGATCCGATACTGCTCACTCGAGCTGTCGAGAATACATAA
454 AATCATCACAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATACATAA
26851277 TTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAAC
1 TTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAAC
* ** * * *
26851342 CATAATCACTTTTTATTGTTATCTAAACCATTTGATAAATTCATACAGGTTCTTTTATCAATTTC
66 CATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTTC
26851407 GTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACA
131 GTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACA
*
26851472 TTTTAAATTTGCAACATCATCATATGCATGCTATTCAACAACATA
196 TTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATA
26851517 TGTAACACCC
Statistics
Matches: 711, Mismatches: 42, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
516 179 0.25
517 526 0.74
518 6 0.01
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (516 bp):
TTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAAC
CATAACCACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTTC
GTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACA
TTTTAAATTTGCAACATCATCATATGCATGCTATCCAACAACATACCATTCCCACATCCATTCAA
TGTCATGAACCACTTCATATTTATCAAGTATTTCTTATTTTACGATTTGAACCAGTTAATATAAA
AAGCCATTAAATCTACAATTATATATATTAAATATATATACAAAAACACAACTAAAATATAAGAC
GAAAATGCAGAAACTTCCATATGAACTTACCTAGAAACTGGCAACTAGAAAGTTTCAGGGACTAA
TCATCACAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATACATAA
Found at i:26852927 original size:37 final size:37
Alignment explanation
Indices: 26852877--26852955 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26852867 TTATTACGAA
* * *
26852877 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
26852914 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26852951 GTCTT
1 GTCTT
26852956 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26853233 original size:47 final size:47
Alignment explanation
Indices: 26853073--26853391 Score: 557
Period size: 47 Copynumber: 6.7 Consensus size: 47
26853063 GCCCTTCGGG
*
26853073 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
26853123 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
26853172 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26853219 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26853266 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26853313 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26853360 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
26853392 ATACTATCAT
Statistics
Matches: 266, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 179 0.67
49 83 0.31
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:26853306 original size:22 final size:23
Alignment explanation
Indices: 26853273--26853353 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
26853263 TACACTTTCA
26853273 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
26853296 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
26853320 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
26853343 CATT-ATCACAT
1 CATTCATCACAT
26853354 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:26853329 original size:25 final size:24
Alignment explanation
Indices: 26853251--26853378 Score: 75
Period size: 25 Copynumber: 5.4 Consensus size: 24
26853241 CCATTAGGCC
26853251 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
26853275 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
26853298 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
26853322 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
26853345 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
26853369 TTCATCACAT
1 TT-ATCACAT
26853379 CGGCCATTAG
Statistics
Matches: 69, Mismatches: 28, Indels: 13
0.63 0.25 0.12
Matches are distributed among these distances:
22 14 0.20
23 16 0.23
24 18 0.26
25 21 0.30
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (24 bp):
TTATCACATATATACACTTTCACA
Found at i:26856943 original size:40 final size:40
Alignment explanation
Indices: 26856898--26857134 Score: 312
Period size: 40 Copynumber: 5.9 Consensus size: 40
26856888 CGAATACACG
* * * * *
26856898 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
26856938 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
26856978 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26857018 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26857058 TCATTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
26857098 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
26857135 TTAGTAACTC
Statistics
Matches: 175, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26857048 original size:80 final size:80
Alignment explanation
Indices: 26856913--26857213 Score: 320
Period size: 80 Copynumber: 3.8 Consensus size: 80
26856903 AGCATGATTA
* * * * * * * ** *
26856913 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
26856978 TCACTAGCACGAATG
66 TCACTAGCACGAATG
* *
26856993 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
26857058 TCATTAGCATGAATG
66 TCACTAGCACGAATG
* * *
26857073 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
26857138 GTAACTCGCACCAATG
66 -TCACTAGCACGAATG
* * ** * *
26857154 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
26857214 CATCATTCGA
Statistics
Matches: 186, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 163 0.88
81 18 0.10
82 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
TCACTAGCACGAATG
Found at i:26857116 original size:120 final size:120
Alignment explanation
Indices: 26856885--26857213 Score: 322
Period size: 120 Copynumber: 2.7 Consensus size: 120
26856875 AGGCACGAAG
* * * * * * * * **
26856885 GCCCGAATACACGTCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACGA
1 GCCCGGATACA-GTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCA-GA
* ** * *
26856950 ATGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTA
64 ATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
26857007 GCCCGGATACA-TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCATGAA
1 GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCA-GAA
* * *
26857071 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTA
65 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
** * * ** * * ** *
26857127 GCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACA
1 GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATA-CATCA-TTAGCAGA
*
26857191 AAGC-CTTCGGGACTTAGCCCGGA
64 ATGCTCTTCGGGACTTAGCCCGGA
26857214 CATCATTCGA
Statistics
Matches: 173, Mismatches: 31, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
120 138 0.80
121 19 0.11
122 16 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
GCCCGGATACAGTCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCATTAGCAGAAT
GCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTA
Found at i:26857159 original size:40 final size:40
Alignment explanation
Indices: 26856913--26857213 Score: 267
Period size: 40 Copynumber: 7.5 Consensus size: 40
26856903 AGCATGATTA
* * *
26856913 CTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
* ** *
26856953 CTCTTTGGGGTTTAGCACGGATATA-TCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
* * *
26856993 CTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * * *
26857033 CTCTTCGGAACTTAGCCCGGATACA-TCATTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
26857073 CTCTTCGGGACTTAGCCCGGATACA-TCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
26857113 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAATG
* * *
26857154 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAG
1 CTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAATG
26857194 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
26857214 CATCATTCGA
Statistics
Matches: 224, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.01
40 203 0.91
41 18 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATG
Found at i:26857560 original size:29 final size:29
Alignment explanation
Indices: 26857521--26857599 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26857511 CTTAATAATC
*
26857521 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26857551 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26857580 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26857600 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26857642 original size:43 final size:43
Alignment explanation
Indices: 26857581--26857683 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26857571 TGCATTTCAA
26857581 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26857624 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26857667 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26857684 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:26859598 original size:37 final size:37
Alignment explanation
Indices: 26859548--26859626 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26859538 TTATTACGAA
* * *
26859548 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26859585 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26859622 GTCTT
1 GTCTT
26859627 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26859971 original size:47 final size:47
Alignment explanation
Indices: 26859744--26860060 Score: 521
Period size: 47 Copynumber: 6.7 Consensus size: 47
26859734 GCCCTTCGGG
*
26859744 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
26859794 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
26859843 ACTTTCACATCCATCACATCGGCCATTA-GCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
26859889 ACTTTCACA-TCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
26859935 ACTTTCACATTCATCCCATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26859982 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26860029 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
26860061 ATACTATCAT
Statistics
Matches: 256, Mismatches: 9, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
45 17 0.07
46 43 0.17
47 111 0.43
48 9 0.04
49 72 0.28
50 4 0.02
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:26866928 original size:516 final size:516
Alignment explanation
Indices: 26861992--26871099 Score: 14831
Period size: 516 Copynumber: 17.7 Consensus size: 516
26861982 TAGGGGTGTC
*
26861992 ACAACATACCATTCTGACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* * *
26862057 TTTTACGATTTAATCCATTTTATATAAAAAGCCATTAAATCTACAATTCTATATATTTCATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * *
26862122 GTAGAAAAACACAATTAAAATATAACACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
*
26862187 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAGTGCTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
26862252 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * * * *
26862317 ATTCCCATTTTTTCATTTTTGTAACCATAACCACTTTCCATTCCTATCCAAACCATTTGTTAAAT
326 ATTCCCA-TTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
* * *
26862382 TCATACAGGTTCTTTTACCGATTTTGTATCATTTCAAACTCTTTAATTGTATACACACATTAATT
390 TCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT
* *
26862447 ATTTTGAATAACAATTCTCTATACATTTTAAATTTACAGCATCATCATATACATGCTATCCA
455 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* * * *
26862509 ACAACATACCATTCCCACATCCATTCAATGTCAGGAATCTCTACATTTTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* *
26862574 TTTTATGATTTGATCCATTTTATATAAAAACCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* *
26862639 ATACAAAAACACAATTAAAATACAATACTAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26862704 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * * *
26862769 AGTCGAGCTGTCGGGAATCAACAATTTGTGCTGGATC-AAACCATCGAATAAATCTCTAATCTCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * **
26862833 ATTCCCATTTTTCATTTTTATAACCATAATCACTTTCCACTCGCATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* *
26862898 CAAACAGGTTCTTTTACCAATTTCGTATCATTTAAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
** * * *
26862963 TTTTGAATAACAATTCTCCGTACAATTTAAATTTGAAACATCATCATATACAGGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
*
26863024 ACAACATACCATTCTCACATCCATTCAATGTCAAGAATCTCTTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26863089 TTTTACGATTT-ATTCCATTTTATATAAAAAGCCATTAAATCTACAATTCTATATATTTAATATA
66 TTTTACGATTTGA-TCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATA
* * * *
26863153 TGTACAAAAACACAATTAAAATATAAGATGAAAATGTAGTAACTTCCATATGAACTTACCTAGAA
130 TATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAA
* *
26863218 ACTGGCAACTAGAAAGTTTCAGGTACTAATCATCACAGATTGCTATATAATAATCCGATACTGCT
195 ACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCT
26863283 CACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCAC
260 CACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCAC
* * * *
26863348 GATTCCCATTTTTTCATTTTTATAACCATAACCACTTTCTATTCCTATCTAAACCATTTGTTAAA
325 GATTCCCA-TTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAA
* * * * *
26863413 TTCATACAGGTTCTTTTACCGATATCGTAACTTTTCAAACTCTTTAATTGTATACACACATTAAT
389 TTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGT
*
26863478 TACTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
454 TATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* * *
26863541 ACAACATACCATTCCCACATCCATTCAATGTCATGAACCTCTTCATTTTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26863606 TTTTATGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* *
26863671 ATACAAAAACACAATTAAAATATAATATGAAAATGCAGTAACTTCTATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26863736 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * *
26863801 AGTCGAGCTGTCGGGAATCCACAATTTGTGCTAGATC-AAACCATCGAATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* **
26863865 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCACTCGCATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* * *
26863930 CAAACAGGTTATTTTA-CAATTTCGTATCATTTCAAACTCTTTAATTGTATACACAGATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* * *
26863994 TTTTGAATAACAATTCTCCATACAATTTAAATTTGCAACATCATCATATACATTCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26864055 ACAACATACTATTCTCACATCCATTCAATGTCATGAATCTCGTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* * *
26864120 TTTTACGAGTTGCTCCA-TTTATA-GAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * *
26864183 ATACAAAAACACAATTAAAATATAAGATGAAAATGTAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
*
26864248 CTGGCAACTAGAATGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* *
26864313 ACTCGAGCTTTTGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* *
26864378 ATTCCCATTTTTGCCTTTTTATAACCATAATCACTTTCTATTCTTATCTAAATCATTTGTTAAAT
326 ATTCCCATTTTT-CCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
** * *
26864443 TCATACAGGTTCTTTTATTAATTTCATACCATTTCAAACTCTTTAATTGTATACACACATTAGTT
390 TCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT
*
26864508 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATGCATGCTATCCA
455 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
26864570 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* * *
26864635 TTTTACGATTTAATCCATTTTATAGAAAAAGCCATTAAATCTACAATTCTATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * * * *
26864700 GTAGAAAAAAAAAATTAAAATATAACACGAAAATGCAGTAACTTCCATATGAACTTACTTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
26864765 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
*
26864830 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCGCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * *
26864895 ATTCCCATTTTTCATTTTTATAGCCATAACCACTTTCCATTC-TATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* *
26864959 CATACAGGTTCTTTTACCGATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAATTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
26865024 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
26865085 ACAACATACCATTC-CACATCCATTCAATGTCATGAATCTCTTCAT-TTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* *
26865148 TTTTATGATTTGATCCATTTTATAGAAAAAGCCATTAAATCTACAATTATAT-TATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
*
26865212 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACATAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* * *
26865277 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAAATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * * *
26865342 AGTCGAGCTGTCGGGAATCCACAATTTGTGCTGGATC-AAACCATTGAATAAATCTCTAATCTCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* **
26865406 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCACTCGCATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
*
26865471 CAAACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* **
26865536 TTTTGAATAACAATTCTCCATACAAATTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26865597 ACAACATACTATTCTCACATCCATTCAATGTCATGAATCTCGTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
26865662 TTTTACGATTTGATCCATTTTATATAAAAA-CCATTAAATCTACAATTATATA-ATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * *
26865725 ATACAAAAACACAATTAAAATATAAGATGAAAATGTAGTAACTTCCATATGAACTAACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
*
26865790 CTGGC-ACTAGAATGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
*
26865854 ATTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * *
26865919 ATTCCCATTTTTTCC-TTTTATAAACATAATCACTTTCTATTCTTATCTAAATCATTTGTTAAAT
326 ATTCCCA-TTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
* **
26865983 TCATACAGGTTCGTTTATTAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT
390 TCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT
*
26866048 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATATA-GCTATCCA
455 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26866109 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCGTAATATTTAT-AAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
26866173 TTTTACGATTT-ATCCATTTTATATAAAAA-CCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * * *
26866236 ATTCAAAAACACAACTAAAATATAAGATGAAAATGTAGTAACTTCCATATGAAC-TATCCTAGAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTA-CCTAGAA
*
26866300 ACTGGCAACTAGAATGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCT
195 ACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCT
* * *
26866365 CACTCGAGCTGTCGAGAATCCATGATTTCTGCTGGATCTCAACCATCGGATAAATCTCTAATCAC
260 CACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCAC
* *
26866430 GATTCCCATTTTTGCTTTTTATAACAATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
325 GATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
* * * * * *
26866495 TAAGACAGGTTCGTTTACCAATTTCGTATCATTTCAAACTTTTTAATTTTATAAACACATTAGTT
390 TCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTT
* * * *
26866560 ATTTTGAATACCATTTCTCTATACATTTTAATTTTTCAACATCATCATATACATGCTATCCA
455 ATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* * *
26866622 ACAACATACCATTCCCACAT-CAGTTCAATGTCATGAATCGCTTCATATTTATCAAGTATTTTTT
1 ACAACATACCATTCTCACATCCA-TTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTT
* *
26866686 ATTTTATGATTTGATCCATTTTATATGAAAAGCCATTAAATCTACAATTATATATATTTAATATA
65 ATTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATA
* *
26866751 CATACAAAAACACAATTAAAATATAATACGAAAATGCAGAAACTTCCATATGAACTTACCTAGAG
130 TATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGA-
* * * **
26866816 AA-TGGAAACTAGAACGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCAATACAAC
194 AACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGC
*
26866880 TCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCGACCATCGAATAAATCTCTAATCA
259 TCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCA
* *
26866945 CGATTCTCGTTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAA
324 CGATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAA
* *
26867010 TTCATACAGGTTCTTTTACCAATTTCGTATCATTTGAAACTCATTAATTGTATACACACATTAGT
389 TTCATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGT
* *
26867075 TATTTTGAATAACAATTCTTTATACATTTTAAATTTGCAACATCATCATATACACGCTATCCA
454 TATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26867138 ACAACATACCATTCCCACATCCATTCAATGTCATGAATCTCATCATATTTATCAAGT-TTTCCTT
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTT-CTT
* * *
26867202 AATTTACGATTTGATCTATTTTATATAAAAACCCATTAAATCTACAATTATATATATTTAATATA
65 ATTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATA
*
26867267 TATACAAAAACACAATTAAAATATAATACAAAAATGCAGTAACTTCCATATGAACTTACCTAGAA
130 TATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAA
* *
26867332 AATGGCAACTAGAAAGTTTCAAGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCT
195 ACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCT
* *
26867397 CACTTGAGCTGTCGAGAATCCACAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCAC
260 CACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCAC
* * * *
26867462 GATTCCCATTTTCGCCTTTTTATAACCATAACCACTTTCCAATCCTATCTAAACCATTTGTTAAA
325 GATTCCCATTTT-TCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAA
* * * * *
26867527 TTCATACAGGTTCTTTTACCGATTTCGTAT-AGTCTCAAACTCTTTAATTTTATACACAAATTAA
389 TTCATACAGGTTCTTTTACCAATTTCGTATCA-TTTCAAACTCTTTAATTGTATACACACATTAG
26867591 TTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
453 TTATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26867655 ACAACATACCATTCCCATATCCATTCAATGTCATGAATCTCTTCAT-TTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* * *
26867719 TTTTATGATTTGATCCATTTTATAGAAAAAGCCATTAAATCTACAATTATATATCTTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
26867784 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCT-GAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26867848 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * * *
26867913 AGTCGAGCTGTCGGGAATCTACAATTTGTGCTGGATC-AAACCATCGAATAAATCTCTAATCTCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * **
26867977 ATTCCCATTTTTCCTTTTTATAAGCATAATCACTTTCCACTC-GCTCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
26868041 CA-ACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* *
26868105 TTTTGAATAACAATTCTCCATACAATTTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
*
26868166 ACAACATACTATTCTCACATCCATTCAATGTCATGAATCT-TTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26868230 TTTTACGATTTGATCCATTTTATATAAAAACCCATTAAATCTACAATTATATATA-TTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * *
26868294 ATACAAAAACACAATTAAAATAGAAGATGAAAATGTAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26868359 CTGGCAACTAGAATGTTTCAGGGACTAATCATCACAGATTACTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* *
26868424 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATTGGATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * *
26868489 ATTCCCATTTTTGCCTTTTTATGACCATAATCACTTTCTATTCTTATCTAAATCATTTGTTAAAT
326 ATTCCCATTTTT-CCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAAT
** *
26868554 TCATACAGGTTCTTTTATTAATTTCGTATCGA-TTCAAACTCTTTAATTGTATACACATATTAGT
390 TCATACAGGTTCTTTTACCAATTTCGTATC-ATTTCAAACTCTTTAATTGTATACACACATTAGT
* *
26868618 TATTTTGAATAACAATTCTCTATACATTTTAAATTTGGAACATCATCATATGCATGCTATCCA
454 TATTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
26868681 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* *
26868746 TTTTACGATTTAATCCATTTTATATAAAAAGCCATTAAATCTACAATTCTATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * * *
26868811 GTACAAAAATACAATTAAAATACAACACGAAAATGCAGTAACTTCCATATGAACTTACTTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26868876 CTGGCAACTAAAAAGTTTCAGGGACTAATCATCACAGATTGCTATACAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
26868941 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * *
26869006 ATTCCCATTTTTCATTTTTATAACCATAACCACTTTCCATTCCTATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* *
26869071 CATACAGGTTCTTTTACCGATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAATTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
26869136 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26869197 ACAACATACCATTCCCACATCCATTCAATGTCATGAATCT-TTCATTTTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
* *
26869261 TTTTATGATTTGATCCATTTTATAGAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
26869326 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26869391 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * * *
26869456 AGTCGAGCTGTCGGGAATCCACAATTTGTGCTGGATC-AAACCATTGAATAAATCTCTAATCTCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* **
26869520 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCACTCACATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* *
26869585 CAAACAGGTTATTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* *
26869650 TTTTGAATAACAATTCTCCATACAATTTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
26869711 ACAACATACCATTC-CACATCCATTCAATGTCATGAATCTCTTCAT-TTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26869774 TTTTATGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
*
26869839 ATGC-AAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
* *
26869903 ATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTGTATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
* * * * *
26869968 AGTCGAGCTGTCGGGAATCCACAATTTGTGCTGGATC-AAACCATCGAATAAATCTCTAATCTCG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* **
26870032 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCACTCGCATCTAAACCATTTGTTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* *
26870097 CAAACAGGTTATTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* *
26870162 TTTTGAATAACAATTCTCCATACAATTTAAATTTGCAACATCATCATATACATGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26870223 ACAACATACTATTCTCACATCCATTCAATGTCATGAATCTCGTCATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26870288 TTTTACGATTTGATCCATTTTATATAAAAACCCATTAAATCTACAATTATATATATTTAATATAT
66 TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
* * * *
26870353 ATACAAAAACACAATTAAAATATAAGATGAAAATGTAGTAACTTCCATATGAACTAACCTAGAAA
131 ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
26870418 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
196 CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
*
26870483 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTATAATCACG
261 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
* * *
26870548 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCTATTCTTATCTAAATCATTTGGTAAATT
326 ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
* **
26870613 CATACAGGTTCGTTTATTAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
391 CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
* *
26870678 TTTTGAATAACAATTCTCTATACGTTTTAAATTTGCAACATCATCATATACAGGCTATCCA
456 TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
* *
26870739 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCGTAATATTTATCAAGTATTTCTTA
1 ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
*
26870804 TTTTACGATTTAATCCATTTTATATAAAAA-CCAATTAAATCTACAATTATATATATTTAATATA
66 TTTTACGATTTGATCCATTTTATATAAAAAGCC-ATTAAATCTACAATTATATATATTTAATATA
* * * * *
26870868 TATACAAAAACACAACTAAATTATAAGATGAAAATGTAGTAACTTCCATATGAAC-TATCCTAGA
130 TATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTA-CCTAGA
*
26870932 AACTGGCAACTAGAATGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGC
194 AACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGC
* * *
26870997 TCACTCGAGCTGTCGAGAATCCATGATTTCTGCTGGATCTCAACCATCGGATAAATCTCTAATCA
259 TCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCA
* * *
26871062 CGATTCTCATTTTTGCTTTTTATAACAATAATCACTTT
324 CGATTCCCATTTTTCCTTTTTATAACCATAATCACTTT
26871100 GTGACAGCCC
Statistics
Matches: 8010, Mismatches: 531, Indels: 101
0.93 0.06 0.01
Matches are distributed among these distances:
510 111 0.01
511 485 0.06
512 1392 0.17
513 667 0.08
514 705 0.09
515 1509 0.19
516 1768 0.22
517 1372 0.17
518 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (516 bp):
ACAACATACCATTCTCACATCCATTCAATGTCATGAATCTCTTCATATTTATCAAGTATTTCTTA
TTTTACGATTTGATCCATTTTATATAAAAAGCCATTAAATCTACAATTATATATATTTAATATAT
ATACAAAAACACAATTAAAATATAATACGAAAATGCAGTAACTTCCATATGAACTTACCTAGAAA
CTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATAATGATCCGATACTGCTC
ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCTAATCACG
ATTCCCATTTTTCCTTTTTATAACCATAATCACTTTCCATTCTTATCTAAACCATTTGTTAAATT
CATACAGGTTCTTTTACCAATTTCGTATCATTTCAAACTCTTTAATTGTATACACACATTAGTTA
TTTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGCTATCCA
Found at i:26873211 original size:40 final size:40
Alignment explanation
Indices: 26873153--26873541 Score: 627
Period size: 40 Copynumber: 9.7 Consensus size: 40
26873143 AGCATTTGAA
* *
26873153 TGATATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
26873193 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
26873233 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
*
26873273 TGATATATCCGGGATAAGACCCGAAGGCATTAGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
26873313 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
*
26873353 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAC
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
* * *
26873393 TGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAAT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
* *
26873433 TGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAA-T
* * *
26873473 TGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT
1 TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
* * *
26873513 TGCTATACCCGGGTTAAGACCCGAAGGCA
1 TGATATATCCGGGATAAGACCCGAAGGCA
26873542 ATTGAGCTTG
Statistics
Matches: 329, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 326 0.99
41 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
TGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAAT
Found at i:26879206 original size:506 final size:511
Alignment explanation
Indices: 26874893--26893747 Score: 24735
Period size: 507 Copynumber: 37.0 Consensus size: 511
26874883 GGGTGTTACA
* * *
26874893 CACTTTCCATTCTTATCTAAA-CATTTGTTAAATTAAGACAGGTTCGTTTACCAATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACC-ATTTCGTATCA
* *
26874957 TTTCAAACTTTTTAATTTTATAAACACATTAGTTA-TTTGAATAAC-ATTCTCTATACATTTTAA
65 TTTCAAACTCTTTAA-TTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
26875020 ATTT-CAACATCATCATATACATGCTATCCAACAACATACCATTCCACAT-CAGTTCAATGTCAT
129 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCA-TTCAATGTCAT
* * *
26875083 GAATCGCTTCATATTTATCAAGTATTT-TTATTTTATGATTTGATCCATTTTATATGAAAAGCCA
193 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
26875147 TTAAATCTACAATTATATATA-TTAATATATATAC-AAAACACAATTAAAATATAATACGAAAAT
258 TTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAAT
* * * *
26875210 GCAGAAACTTCCATATGAACTTACCTAGAGAATGGAAACTAGAACG-TTAAGGGACTAATCATCA
322 GCAGTAACTTCCATATGAACTTACCTAGA-AATGGCAACTAGAAAGTTTCAGGGACTAATCATCA
* *
26875274 CAGATTGCTATATAATGATCCAATACAGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGG
386 CAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGG
26875339 ATCTCAACCATCGAATAAATCTCTAATCACGATT-CC-TTTTTCC-TTTTATAACCATAAT
451 ATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26875397 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
*
26875462 TT-AAACTCATTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACA-TTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
*
26875525 TTTGCAAC-TCATCATATACACGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCATG
* *
26875589 AATCTCATCATATTTATCAAGT-TTTCTTAATTTACGATTTGATCCATTTTATATAAAAA-CCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26875652 TAAATC-ACAATTATATATA-TTAATATATATACAAAAA-ACAATTAAAATA-AAACGAAAATGC
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGC
26875713 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAG-TTCA-GGACTAATCATCACAG
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26875776 ATTGCTATATAATGATCCGATAC-GCTCACTCGAGCTGTCGA-AATCCATAA-TTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
*
26875838 TCAACCATCGAATAAATCTCTAATCAC-ATTCCCATTTTT-CATTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26875894 CACTTTCCATTC-TATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCGA-TT-GTATC-
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACC-ATTTCGTATCA
26875955 TTTCAAACTCTTTAATTGTATACACACATTA-TTA-TTTGAATAACAATTCTCTATACATTTTAA
65 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
26876018 ATTTGCAAC-TCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATG
129 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATG
*
26876082 AATCTCTTC--ATTTATCAAGTATTTCTTATTTTATGATTTGATCCATTTTATATAAAAAGCCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26876145 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAATG
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATG
26876210 CAGTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCA-
323 CAGTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCAC
* * * *
26876274 AGATTGCTGTATAATGATCCGATACTACTCA-TCGAG-TGTCG-GAATCCACAATTTGTGCTAGA
387 AGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGA
26876336 --TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
452 TCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
* *
26876394 CACTTTCCATTC-CATCTAAACCATTTGTTAAATTCA-ACAGGTTC-TTTACAATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26876456 TTCAAACTCTTTAATTGTATACACACATTAGTTA-TTTGAATAACAATTCTC-ATACA-TTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
*
26876518 TTTGCAACATCATCATATACATGCTATCCAACAACATACTATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
*
26876583 ATCTCGTCATATTTATCAAGTATTTCTTATTTTACGA-TTGATCCA-TTT-TATAAAAA-CCA-T
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
*
26876643 AAATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAAGA-GAAAATGT
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGC
26876704 AGTAACTTCCATATGAACTTACCTAGAAACTGGCAACTAG-AAGTTTCAGGGACTAATCATCACA
324 AGTAACTTCCATATGAACTTACCTAGAAA-TGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
26876768 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
388 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
26876833 CTCAACCATC-AATAAATCTCTAATCACGATTCCCATTTTTCC-TTTTATAACCATAAT
453 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
*
26876890 CACTTTCCATTCTTATCTAAATCATTTGTTAAATTCATACAGGTTCTTTTA-CATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26876954 TTCAAACTC-TTAATTTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26877017 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCATGA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATGA
26877082 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTT-ATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26877146 AAATCTACAATTATATATA-TTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26877210 G-AACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
26877274 TTGCTATAT-ATGATCCGATACTGCTCACTC-AGCTGTCGAGAATCCATAATTTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
26877337 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26877394 CACTTTCCATTC-TATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26877458 TTCAAACTCTTTAATTTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26877522 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26877587 TCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26877651 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAATGCA
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGCA
26877716 GTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAG-AAGTTTCAGGGACTAATCATCACAG
325 GTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26877780 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26877845 TCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26877902 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26877967 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26878032 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATG
26878097 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26878162 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAA-GAAAATGC
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGC
26878226 AGTAACTTCCATATGAACTTACCTAGAAACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
324 AGTAACTTCCATATGAACTTACCTAGAAA-TGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
26878291 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
388 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
26878356 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
453 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26878415 CACTTTCCTATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CATTTCGTATCA
1 CACTTTCC-ATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCA
26878479 TTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
65 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
26878544 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
129 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCAT
26878609 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
193 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
26878674 TTAAATCTACAA-T-TATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAAT
258 TTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAAT
26878737 GCAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTT-A-GGACTAATCATCAC
322 GCAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCAC
26878800 AGATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGA
387 AGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGA
26878864 TCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
452 TCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26878924 CACTTTCCATTC-TATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26878988 TTCAAACTCTTTAATTTATACACACATTA-TTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26879052 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26879117 TCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26879181 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAATGCA
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGCA
26879246 GTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
325 GTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26879311 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT-
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26879374 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26879432 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCA
26879497 TTTCAAACTCTTTAATTGTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAA
65 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
26879561 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCAT
129 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCAT
26879626 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCA-TTTATATAAAAAGCCA
193 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
26879689 TTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAAT
258 TTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAAT
*
26879754 GCAGAAACTTCCATATGAACTTACCTAGAAACTGGCAACTAG-AAGTTTCAGGGACTAATCATCA
322 GCAGTAACTTCCATATGAACTTACCTAGAAA-TGGCAACTAGAAAGTTTCAGGGACTAATCATCA
26879818 CAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGG
386 CAGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGG
26879883 ATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
451 ATCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26879944 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26880009 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26880074 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCATGA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATGA
26880139 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26880204 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26880269 GTAACTTCCATATGAACTTACCTAGAAACTGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
325 GTAACTTCCATATGAACTTACCTAGAAA-TGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26880334 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26880398 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26880456 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26880521 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26880586 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26880651 TCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26880715 AATCTACAATTATATATA-TTAATATATATACAAAAACACAATTAAAATATAATACGAAAATGCA
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGCA
26880779 GTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
325 GTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26880844 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26880908 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26880966 CACTTTCCATTC-TATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26881030 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26881095 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATG
26881160 AATCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCATTTTATATAAAAAGCCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26881224 TAAATCTACAATTATATATA-TTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGC
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGC
26881288 AG-AACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCAGGGACTAATCATCACAG
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26881351 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26881415 TCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26881472 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26881537 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26881602 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCTCACATCCATTCAATGTCATGA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATGA
26881667 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26881732 AAATCTACAA-T-TATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26881795 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCA-GGACTAATCATCACAGA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
26881859 TTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
26881923 CAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCC-TTTTATAACCATAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26881978 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCA
26882043 TTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
65 TTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26882108 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
26882173 ATCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCA-TTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26882236 AAATCTAC-A--ATATATA-TTAATATATATAC-AAAACACAATT-AAA-ATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26882294 G-AACTT-CATATGAACTTACCTAGAAAT-GCAACTAGAAAG-TTCA-GGACTAATCATCACAGA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
26882354 TTGCTATAT-ATGATCCGATACT-CTCACTCGAGCTGTCGAGAATCCATAA-TTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
* *
26882416 CAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTTTTTCTTTTTATCTACCATTTTAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCA---TTTTTCCTTTTTAT-AACCA---TAAT
* * * * * * ** **
26882479 CATCTTT--TTTTTTATCTTTATTTACCATTTTTTAATTTCTTTTAATTTCATTTTACCCATTTC
1 CA-CTTTCCATTCTTATC--TA--AACCATTTGTTAAATTCATACAGGTTC-TTTTA-CCATTTC
** * * * * *
26882542 -TATTCATTTTCTTTATATTTTTTTTTTATTTTATA-AAAAATTAAAAATATAATAAAAAAAAAA
59 GTA-TCA-TTTC---A-A---ACTCTTTAATTTATACACACATT---AGT-T-AT----------
*** * * * * ** * * *
26882605 AATAAAAAAAAAAACTTCATATACTAAAATGCACTAGAAGTT-CAGGACTATCATCAGATTGTAT
100 --TTTGAATAACAA-TTC-TCTA-T-ACAT--TTTA-AATTTGCA--AC-ATCATC--A-TATAC
* * * * *
26882669 ATG--ATCGATAC-TCACT-CGAGCTGTCGA-ATCCA-T-AATTGTGC-TG-ATCTCAACCATCG
150 ATGCTATCCA-ACAACA-TACCA--T-TCCACATCCATTCAA-TGT-CATGAATCT----CTTC-
* * * * * *
26882725 AATAAATCTCTAATCACGATTCCCATTTTTCCTT-TTATACCATAATCACTTTCCATTCTTATCT
203 -AT--AT-T-T-ATCA--AGT---A--TTT-CTTATTTTACGAT-TTGA---TCCATT-TTATAT
* **** * * * * * ** * * *
26882789 AAACCATTTGTTAATTCATACAGGTTCTTTTACCATTTCGTATCAT-TTC--AAACTC--TTTAA
249 AAA-AAGCCATTAAATC-TACA-ATT-ATATA-TATTTAATAT-ATATACAAAAACACAATTAAA
* * * * * * * ** ** * ** * *
26882849 TTGTATAC-ACACAT-TAGTTATTTGAATAACAATTCTCTATACATTTAAATTTGCAACATCA-T
308 ATATAAACGA-AAATGCAGTAACTTCCATATGAA----CT-TACCTAGAAA-TGGCAAC-T-AGA
* * ** * * * * * * *
26882911 CA-TATACATGCTATCCAA-CAACATACCATTCCACATCCATTCAATG-TCATGA-ATCT-CTTC
364 AAGT-TTCA-GGGA-CTAATCATCACA-GATTGC-TAT--A-T-AATGATC-CGATA-CTGC-TC
** * * * * * * * * * ** *
26882971 A-T--ATTTATCAAGTATTC-TTATTT-TAC--GATTTGATCCATTTTATATAAAAGC-CATTAA
417 ACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCA-TCGA-AT-AAATCTC--T-A
* ** * ** * *
26883028 ATCTACAATT-ATATATTTAATATATAT-A-CA-AA-
476 ATC-ACGATTCCCATTTTTCCTTTTTATAACCATAAT
* * * *** * * ** * * ** * ** * **
26883060 AAC--ACAATTAAAATATAAACGAAAATG-CAGAACTTCCATATGAACTTACCTAGA-AATGGCA
1 CACTTTCCATTCTTATCTAAAC-CATTTGTTA-AA-TT-CATA-CAGGTT-CTTTTACCATTTC-
* ** **** * * * * * * *
26883121 ACTAGAAAGTTTCAGGGAC--TAA-TCAT-CACAGATT-GCTATATATGATCCGATACTGCTCAC
59 -GTA-TCA-TTTCAAACTCTTTAATTTATACACACATTAGTTAT-TTTGA----ATA--AC-AAT
* * * ** * *** * *
26883181 TCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC-TCA-A-CCATCGAATAAATCTCTAATC-A
113 TC--TCTAT--A-CAT-TTTAAATT-TGCAACATCATCATATACAT-G-CT--ATC-C-AA-CAA
* ** * ** ** * ** *
26883242 CGATTCCCATT---TTTCCTTTTTATACCAT-AATCACTTTCCAT-TCTTATCTAAACCATTTGT
164 C-A-TACCATTCCACATCCATTCAATGTCATGAATCTC-TT-CATAT-TTATC--AAGTATTTCT
* * ** ** *
26883302 TAAATTCATACAGGTTCTTTTACCATTTCGTATCATTTCAAA-CTCTTTAATTTATAC-ACACAT
222 T--ATT-TTAC-GATT-TGAT-CCATTT--TAT-A-TAAAAAGC-CATTAA---AT-CTACA-AT
* * *** * * * * * ** *
26883365 TAGT-TAT-TTTGAATA-ACAATTC-TCTATACATTTTAAATTTGCAAC-ATCAT-CA-TATACA
271 TA-TATATATTT-AATATA-TATACAAAAACACAATTAAAATAT-AAACGAAAATGCAGTA-ACT
* * * * ** ** * ** * * * *
26883423 TGC-TATCCAAC-AACATA-CCATTCCACATCCATTCAA-TGTCATGAATCTCTTCATATTTATC
331 TCCATAT-GAACTTACCTAGAAATGGCA-A-CTA-GAAAGTTTCAGGGA---C-T-A-A-TCATC
* * * * ** * * * * ** ** *
26883484 A-AGTATTTCTTATTTTACGATTTGATCCAT-TTTATATAAAAAGCCAT-TA-AATCTACAATTA
385 ACAG-ATTGC-TATATAATGATCCGATAC-TGCTCA-CT--CGAGCTGTCGAGAATC--C-A-TA
** ** * * * * * * **
26883545 TATATT-TAATATATATACAAAACA-C-AATTAAA-ATATAAT-ACGAAAAT-GCAGTAACTTCC
440 -AT-TTGTGCTGGATCT-C-AACCATCGAA-TAAATCTCTAATCACG--ATTCCCA-T-TTTTCC
* ** * *
26883604 ATATGAACTTACCTAGAAAT
496 -TTTTTA-TAACC-A-TAAT
**** * * * * * * * * * **
26883624 GGCAACTAGAAAGTT-TCAGGGACTAATCATCACAGATTGCTATATATGAT-CCGATACTGCT--
1 --C-ACTTTCCA-TTCTTA---TCTAA--A-C-CA-TTTGTTAAAT-TCATACAGGTTCTTTTAC
* * * ** * * * * * *
26883685 CA-CTCG-AGC-TGTCGAGAA-TCCATAATTTGTGCTGGATCTCAACCATCGAATAAATCTCT-A
53 CATTTCGTATCATTTC-A-AACTCTTTAA-TT-T-AT--A-CAC-A-CAT-TAGT-TAT-TTTGA
* * * *** ** * * * * * *
26883745 ATCACGATTC-CCAT---TTTTCCTTTTATAACCATAATCACTTTCCATTCTTATCTAA-ACCAT
105 ATAACAATTCTCTATACATTTTAAATTTGCAA-CATCATCA-TATACATGC-TATCCAACAACA-
* * ** * * * *
26883805 TTGTTA-AATTCATACAGGTTCTTTTACCATTTCGTATCATTTCAAACTCTTTA-ATTTATACAC
166 ----TACCATTC-CACA---TCCATT--CA-AT-G--TCA--TGAATCTCTTCATATTTAT-CA-
* ** * * * * * * * *
26883868 A-CATTAGTTATTTGAATAACAATTCTCTATACATTTTAAATTTGCAACATCATCATATACATGC
213 AGTATTTCTTATTT---T-ACGATT-T-GATCCATTTT--ATAT-AAAAAGC--CAT-TAAAT-C
** * * ** * ** * *** * *** * * *
26883932 TATCCAACAACATACCATTCCACATCCATTCAATGTCATGAATCTCTTCATATTTATC-AAGTAT
265 TA--CAATTATATA-TATTTAATATATATACAAAAACA-CAAT-T-AAAATA-TAAACGAA--AA
* * ** * * * *** * ** * * * *
26883996 TTC-TTATTTTACGATTTGATCCATTTTATATAAAAAGCCA-T-TAAA---TC---TAC-AATTA
321 TGCAGTAACTT-CCATATGA-AC-TTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCA
* * ** ** * * * * * **
26884051 T-ATATATTAATATATATACAAAACACAATTAAAAT-AT-AATACGAAAATG-C-AGAACTTCCA
383 TCACAGATTGCTATATA-A-TGATC-CGA-T--ACTGCTCACT-CG-AGCTGTCGAGAA--TCCA
** * * * * * *** * * **
26884111 T-A--TGAACT-TACCT-AGA-AATGGCAACTAGAAAGTTTC-AGGGACTAATCATCACA-GATT
438 TAATTTGTGCTGGATCTCA-ACCATCG-AA-T--AAA-TCTCTAATCAC-GAT--TCCCATTTTT
* * * *
26884168 GCTATATAATGATCCGATACTGCTCACT
494 CCT-TTTTAT-AACC-ATA------A-T
* * * * * * *
26884196 CGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTCAACCA-TCGAATAAATCTC-TAATCACGA
1 C-A-CTTTC---CAT---T--------CT-TATCTAAACCATTTG-TTAAAT-TCAT-A-CA-GG
* * ** * * * *
26884259 TTCCCATTTTTCC-TTT-TTAT-A-ACCATAATCACTTTCCATTCT-TATCTAAACCATTTGTTA
44 TT--C-TTTTACCATTTCGTATCATTTCA-AA-CTCTTT-AATT-TATA-C-ACA-CATTAGTTA
** * * * * * *
26884319 AATT-CAT-ACAGGTTCT-T-TACCATTTCGTATCATTT-CAA-A-C-TC-TTTA-AT-TTATAC
99 TTTTGAATAACA-ATTCTCTATA-CATTT--TA-AATTTGCAACATCATCATATACATGCTATCC
** ** * ** * * * ** *
26884373 -AC-ACATTAGTTATTTTGA-ATAACAATTCTCTATACATTTAAATTTGCAACATCATCATATAC
159 AACAACA-TA-CCA-TTCCACAT--CCATTCAATGT-CA--TGAATCT-CTTCAT-AT-TTAT-C
* * ** *** * ** ** * ** * * *
26884435 ATGCTA-TCCAACAACATACCATTCCACATCCATTCAATGTCATGAATCTC-TTCATATTTATCA
212 AAG-TATTTC-TTATTTTACGATT--TGATCCATTTTATAT-AAAAAGC-CATT-AAATCTA-CA
* * * * * * **
26884498 AGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAGC-C-ATT-AAATCTACAATTATAT
269 ATTATAT-ATA-TTTA--A--T-AT--A---TATACAAAAACACAATTAAAATATA-AACGA-A-
** * * * ** * ** * * * * * * * * *
26884560 ATATTTAATATA-TATACAAAACACAATTAAAATATAAA-CGAAAATGCAGTAACTTCCATATGA
319 A-ATGCAGTA-ACT-TCCATATGA-ACTT-ACCTAGAAATGGCAACT--AGAAAGTTTC--AGGG
* * * * * * * * * * ** ** * * **
26884623 ACTTA-CCT-AGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGATTGCTATATATG-
375 ACTAATCATCACAGATTGCTA-TATAATG-ATCCGATACTGCTCA-CTC-GA--GCTGTCGA-GA
* * ** * ** * ** ** * *
26884685 ATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC-AACCATCGAAT
433 ATCC-ATAAT--T---T-GTGCTG--GA-TCTCAACCA-TCG-AATAAATCTCTAATCA-CGATT
** * *
26884749 -AAATCTCTAATCACGATTCCCATTTTTCCTTTTTATACCATAAT
485 CCCAT-T-T-TTC-C---T--------T--TTTATA-ACCATAAT
26884793 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26884858 TTCAAACTCTTTAATTTATACACACATTAGTTA-TTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26884922 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26884987 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26885052 AATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAATACGAAAATGCA
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGCA
26885114 GTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
325 GTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26885179 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26885243 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCC-TTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26885300 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCCATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTA-CCATTTCGTATCA
26885365 TTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
65 TTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26885430 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
26885495 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCA-TTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26885559 AAATCTACAATTATATATA-TTAATATATATAC-AAAACACAATTAAAATATAATACGAAAATGC
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGC
26885622 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26885687 ATTGCTATAT-ATGATCCGATACTGCTCA-TCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26885750 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26885807 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26885872 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26885937 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26886002 TCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT-
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26886065 AATCTACAA-TATATATA-TTAATATATATAC-AAAACACAATTAAAATATAAACGAAAATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26886127 TAACTT-CATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCA-GGACTAATCATCACAGA-
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
26886188 TGC--TATAATGAT-CGATA-TGCTCA-TCGAGCTGTCG-GAATCCA-AATTTGTGCTGGATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
26886246 AACCATCGAATAAATCTC-AATCAC-ATTCCCATTTTTCC-TTTTAT-ACCATAAT
456 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26886298 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26886363 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26886428 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCATG
26886493 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26886558 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAATACGAAAATG
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATG
26886623 CAGTAACTTCCATATGAACTTACCTAGAAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCAC
323 CAGTAACTTCCATATGAACTTACCTAG-AAATGGCAACTAGAAAGTTTCAGGGACTAATCATCAC
*
26886688 AGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGGGCT-GA
387 AGATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGA
26886752 TCTCAACCATCGAATAAATCTCTAATCAC-ATTCCCA-TTTTCCTTTTTATAACCATAAT
452 TCTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26886810 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACA-GTTC-TTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26886873 TTCAAACTCTTTAATTTATACAC-CATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26886937 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26887002 TCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26887066 AATCTACAA-TATATATATTTAATATATATAC-AAAACACAATTAAAATATAAACGAAAATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26887129 TAACTT-CATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCAC-GAT
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
26887192 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
26887257 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
456 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26887313 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26887378 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26887443 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCATG
26887508 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
26887573 TAAATCTACAATTATATATA-TTAATATATATACAAAAACACAATTAAAATATAATACGAAAATG
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATG
26887637 CAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCA-GGACTAATCATCACA
323 CAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
*
26887701 GATTG-TATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCACAATTTGTGCTGGAT
388 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
26887765 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
453 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26887824 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTC-TTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26887888 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26887953 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
26888018 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26888083 AAATCTACAA-T-TATATATTTAATATATATACAAAAACACAATTAAAATATAACACGAAAATGC
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGC
26888146 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCA-GGACTAATCATCACAG
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26888209 ATTGCTATATAATGAT-CGATACTGCTCA-TCGAGCTGTCG-GAATCCA-AATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26888270 TCAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26888327 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTC-TATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26888391 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26888456 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26888521 TCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26888585 AATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAACACGAAAATGCA
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGCA
26888647 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
*
26888712 TTGCTATATAATGATCCGATACTGCTCA-TCGAGCTGTCG-GAATCCACAATTTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
26888775 CAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCCTTTTTATAACCATAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26888831 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTC-TATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26888895 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26888960 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26889025 TCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26889089 AATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAAACGAAAATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26889151 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCAGGGACTAATCATCACAGAT
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
26889215 TGCTATATAATGATCCGATACTGCTCA-TCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
26889279 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
456 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26889335 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACC-ATTTCGTATCA
26889400 TTTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
65 TTTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAA
26889465 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCAT
129 ATTTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCAT
26889530 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
193 GAATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCA
26889595 TTAAATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAAACGAAAATG
258 TTAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATG
26889657 CAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCA-GGACTAATCATCACA
323 CAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
26889721 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
388 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
26889786 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
453 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26889845 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26889910 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26889975 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATGA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCATGA
26890040 ATCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26890104 AAATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26890166 GTAACTTCCATATGAACTTACCTAGAAAT-GCAACTAG-AAGTTTCA-GGACTAATCATCAC-GA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
26890227 TTGCTATATAATGATCCGATACTGCTCA-TCGAGCTGTCG-GAATCCATAATTTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
26890290 CAACCATCGAATAAATCTCTAATCACGATTCCCA-TTTTCC-TTTTATAACCATAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26890345 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26890410 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26890475 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCCACATCCATTCAATGTCATGA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATT-CCACATCCATTCAATGTCATGA
26890540 ATCTCTTCATATTTATCAAGTA-TTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26890604 AAATCTACAA-T-TATATATTTAATATATATAC-AAAACACAATTAAAATATAACACG-AAATGC
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGC
26890665 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCAGGGACTAATCATCAC-G
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26890728 ATTGCTATAT-ATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26890792 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26890850 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26890915 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26890980 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
26891045 ATCTCTTCATATTTATCAAGTATTTCTTA-TTTACGATTTGATCCATTTTATATAAAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26891109 AAATCTACAA-T-TATATATTTAATATATATACAAAAACACAATTAAAATATAACACGAAAATGC
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATGC
26891172 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCA-GGACTAATCATCACAG
324 AGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAG
26891235 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
389 ATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATC
26891300 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCC-TTTTATAACCATAAT
454 TCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26891357 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26891422 TTCAAACTCTTTAATTGTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
66 TTCAAACTCTTTAATT-TATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
26891487 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGA
26891552 ATCTCTTCATATTTATCAAGTATTTCTTATTTTA-GATTTGATCCA-TTTATAT-AAAAGCCATT
195 ATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATT
26891614 AAATCTAC-A--ATATATATTTAATATATATAC-AAAACACAATT-AAATATAAACGAAAATGCA
260 AAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCA
26891674 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAG-AAGTTTCA-GGACTAATCATCACAGA
325 GTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGA
26891737 TTGCTAT-TAATGATCCGATACTGCTCA-TCGAGCTGTCG-GAATCCA-AATTTGTGCTGGATCT
390 TTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCT
26891798 CAACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCC-TTTT-TAACCATAAT
455 CAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26891852 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTC-TATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26891916 TTC-AACTCTTTAATTTAT--ACACATTAGTTATTTT-AAT-AC-ATTCTCTATACATTTT-AAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26891974 TTGCAACATCATCATATACATGCTATCC-AC-ACATACCATTCCACATCCATTCAATGTCATG-A
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26892036 TCTCTTCATATTTATC-AGTATTTCTTATTTTA-GATTTGATCCA-TTT-TAT-AAAAG-CATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26892095 AA--TACAA-T-TATATATTTAATATATATAC-AAAACACAATT-AAA-ATAAACGAAAATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26892153 TAACTT-CATATGAACTTACCTAGAAAT-GCAACTAG-AAGTTTCAGGGACTAATCATCACAGAT
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
26892215 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCG-GAATCCATAATTTGTGCTGGATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
26892279 AACCATCGAATAAATCTCTAATCACGATT-CCATTTTTCCTTTTTAT-ACCATAAT
456 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26892333 CACTTTCCATTCTTATCTAAACCA-TTGTTAAATTCATACA-GTTCTTTTACCATTTCGTATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26892396 TTCAAACTCTTT-ATTTATACACACATTAGTTATTTTGAAT-ACAA-TCTCTATACATTTTAAAT
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26892458 TTGCAACATCATCATATACATGCTATCCAACAACATA-CATTCCACATCCATTCAATGTCATGAA
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26892522 TCTCTTCATATTTATCAAGTATTTCTTA-TTTACGATTT-ATCCATTTTATATAAAAAGCCATTA
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26892585 AATCTACAA-TATATATATTT-A-ATATATAC-AAAA-ACAATTAAAATATAAACGAAAATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26892645 TAACTTCCATATGAACTTACCTAGAAAT-GCAACTAG-AAG-TTCAGGGACTAATCATCACAGAT
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
26892707 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCG-GAATCC--AATTTGTGCT-GATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
26892768 AACCATCG-ATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-ACCATAAT
456 AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
26892822 CACTTT-CATTCTTATCT-AA-CATTTG-T-AATTCATACAGGTTCTTTTA-CATTT--TATCAT
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
26892879 TT----CTCTTT-A-TT-TA-ACACATTAGTTA-TTTGAAT-ACAATTCTCTATACATTTT-AA-
66 TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
26892932 -T------TCATCATATACATGCTAT----C-AC-TA-CATTCCA-ATCCA-TC-ATGT--TG-A
131 TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
26892977 T-TCTTCAT-TTT-T----TA-TT-TT-TTTTA-G-TTT-ATCCA-TTT-TATAAAAA-CC-TT-
196 TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
26893024 AATCT-C-ATTAT-TAT-TTT--TAT-T-T-C-AAAACAC-A-T-AAA-ATAAACG--AATGCAG
261 AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
26893073 TAACTTCCAT-TGAA-TTA-CTAGAAAT-GCAA-TAGAAAGTTTCAGGGACTAATCATCACAGAT
326 TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
* *
26893133 TGCTATATAATGATCCGATACTGCTCAGTCGAGCTGTCGAGAATCCACAATTTGTGCTGGATCTC
391 TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
*
26893198 AACCATCGAATTAAATCTCTAATCACGAAT-CCATTTTTCCTTTTTATAAACCATAAT
456 AACCATCGAA-TAAATCTCTAATCACGATTCCCATTTTTCCTTTTTAT-AACCATAAT
26893255 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCAATTTCGTATCA
1 CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACC-ATTTCGTATCA
*
26893320 TTTCAAACTCTTTAA-TTGTACACACATTAGTTATTTTGAATAACAATTCTCTA-ACATTTTAAA
65 TTTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAA
*
26893383 TTTGCAACATCATCATATACATGCTATCCAACAACAGACCATTCTCACATCCATTCAATGTCATG
130 TTTGCAACATCATCATATACATGCTATCCAACAACATACCATTC-CACATCCATTCAATGTCATG
*
26893448 AATCTCTTCATATTTATCAAATATTTCTTA-TTTACGATTTGATCCA-TTT-TATAAAAAGCCA-
194 AATCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCAT
*
26893509 T-AATCTACAA-TATATATATTTAATATATATACAAACA-ACAATTAAAATATAATACGAAAATG
259 TAAATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAA-ACGAAAATG
*
26893571 CAGTAACTTCCATATGAACTTACCTAGAAATGGTAACTAG-AAG-TT-A-GGACTAATCATCACA
323 CAGTAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACA
*
26893632 GATTGCTATATAATGATCCGATACTGCTCAGTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
388 GATTGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGAT
26893697 CTCAACCATCGAATAAATCTCTAATCAC-ATTCCCATTTTTCCTTTTT-TAAC
453 CTCAACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAAC
26893748 NNNNNNNNNN
Statistics
Matches: 16683, Mismatches: 800, Indels: 1741
0.87 0.04 0.09
Matches are distributed among these distances:
424 3 0.00
425 15 0.00
426 64 0.00
427 10 0.00
428 17 0.00
429 10 0.00
430 21 0.00
431 21 0.00
432 19 0.00
433 20 0.00
434 14 0.00
435 3 0.00
436 11 0.00
437 5 0.00
438 24 0.00
439 6 0.00
440 6 0.00
441 2 0.00
442 16 0.00
443 3 0.00
444 8 0.00
445 1 0.00
446 12 0.00
447 5 0.00
448 4 0.00
449 12 0.00
450 14 0.00
451 13 0.00
452 1 0.00
453 4 0.00
454 7 0.00
455 2 0.00
456 2 0.00
458 4 0.00
459 20 0.00
460 5 0.00
461 9 0.00
462 2 0.00
463 2 0.00
464 2 0.00
465 1 0.00
466 5 0.00
467 20 0.00
468 5 0.00
469 2 0.00
470 4 0.00
472 2 0.00
473 3 0.00
474 7 0.00
475 16 0.00
476 43 0.00
477 47 0.00
478 47 0.00
479 76 0.00
480 96 0.01
481 54 0.00
482 53 0.00
483 45 0.00
484 66 0.00
485 60 0.00
486 82 0.00
487 44 0.00
488 40 0.00
489 56 0.00
490 39 0.00
491 124 0.01
492 269 0.02
493 281 0.02
494 208 0.01
495 208 0.01
496 234 0.01
497 218 0.01
498 223 0.01
499 235 0.01
500 774 0.05
501 447 0.03
502 585 0.04
503 611 0.04
504 1065 0.06
505 731 0.04
506 949 0.06
507 1551 0.09
508 854 0.05
509 1105 0.07
510 877 0.05
511 1001 0.06
512 821 0.05
513 488 0.03
514 43 0.00
515 2 0.00
516 1 0.00
517 2 0.00
522 1 0.00
523 2 0.00
524 1 0.00
525 11 0.00
526 8 0.00
527 4 0.00
528 2 0.00
529 7 0.00
530 8 0.00
531 4 0.00
532 1 0.00
533 3 0.00
534 1 0.00
535 4 0.00
536 9 0.00
537 11 0.00
538 6 0.00
539 16 0.00
540 12 0.00
541 22 0.00
542 11 0.00
543 7 0.00
544 25 0.00
545 15 0.00
546 29 0.00
547 24 0.00
548 20 0.00
549 19 0.00
550 31 0.00
551 15 0.00
552 30 0.00
553 8 0.00
554 12 0.00
555 7 0.00
556 8 0.00
557 13 0.00
558 24 0.00
559 24 0.00
560 20 0.00
561 26 0.00
562 26 0.00
563 30 0.00
564 27 0.00
565 39 0.00
566 37 0.00
567 33 0.00
568 31 0.00
569 33 0.00
570 29 0.00
571 43 0.00
572 58 0.00
573 34 0.00
574 46 0.00
575 51 0.00
576 38 0.00
577 36 0.00
578 42 0.00
579 33 0.00
580 54 0.00
581 23 0.00
582 24 0.00
583 8 0.00
584 18 0.00
585 13 0.00
586 25 0.00
587 6 0.00
588 11 0.00
589 31 0.00
590 4 0.00
591 19 0.00
592 15 0.00
593 3 0.00
594 3 0.00
595 6 0.00
596 2 0.00
597 2 0.00
598 1 0.00
603 1 0.00
604 4 0.00
605 4 0.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.36
Consensus pattern (511 bp):
CACTTTCCATTCTTATCTAAACCATTTGTTAAATTCATACAGGTTCTTTTACCATTTCGTATCAT
TTCAAACTCTTTAATTTATACACACATTAGTTATTTTGAATAACAATTCTCTATACATTTTAAAT
TTGCAACATCATCATATACATGCTATCCAACAACATACCATTCCACATCCATTCAATGTCATGAA
TCTCTTCATATTTATCAAGTATTTCTTATTTTACGATTTGATCCATTTTATATAAAAAGCCATTA
AATCTACAATTATATATATTTAATATATATACAAAAACACAATTAAAATATAAACGAAAATGCAG
TAACTTCCATATGAACTTACCTAGAAATGGCAACTAGAAAGTTTCAGGGACTAATCATCACAGAT
TGCTATATAATGATCCGATACTGCTCACTCGAGCTGTCGAGAATCCATAATTTGTGCTGGATCTC
AACCATCGAATAAATCTCTAATCACGATTCCCATTTTTCCTTTTTATAACCATAAT
Found at i:26882603 original size:16 final size:15
Alignment explanation
Indices: 26882574--26882618 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
26882564 TTTTTATTTT
* *
26882574 ATAAAAAATTAAAAAT
1 ATAAAAAA-AAAAAAA
26882590 ATAATAAAAAAAAAAA
1 ATAA-AAAAAAAAAAA
26882606 ATAAAAAAAAAAA
1 ATAAAAAAAAAAA
26882619 CTTCATATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 9 0.35
16 13 0.50
17 4 0.15
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
ATAAAAAAAAAAAAA
Found at i:26882608 original size:13 final size:13
Alignment explanation
Indices: 26882592--26882618 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26882582 TTAAAAATAT
26882592 AATAAAAAAAAAA
1 AATAAAAAAAAAA
26882605 AATAAAAAAAAAA
1 AATAAAAAAAAAA
26882618 A
1 A
26882619 CTTCATATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (13 bp):
AATAAAAAAAAAA
Found at i:26907400 original size:27 final size:27
Alignment explanation
Indices: 26907370--26907547 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
26907360 ATATTGAGTC
* *
26907370 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
26907397 CGCACACTTAGTACTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26907424 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26907452 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
26907479 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
26907506 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26907533 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26907548 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26915521 original size:27 final size:27
Alignment explanation
Indices: 26915491--26915668 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
26915481 ATATTGAGTC
* *
26915491 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26915518 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26915545 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26915573 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
26915600 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
26915627 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26915654 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26915669 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26917509 original size:40 final size:40
Alignment explanation
Indices: 26917454--26917540 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
26917444 GGCTGTCACA
* *
26917454 GCATTTGTGTGAGTTACTA-AATCCGGGTTAAGTCCCGAAG
1 GCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAG
*
26917494 GCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAG
1 GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
26917534 GCATTTG
1 GCATTTG
26917541 AACGAGTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAG
Found at i:26921981 original size:50 final size:50
Alignment explanation
Indices: 26921812--26921996 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 50
26921802 AAAGTGATGG
** *
26921812 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTTG-
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGTACC-G-A--AAAGTTTGA
* * * * * *
26921865 -CA--TGTGTAGTACTATGTGCAGGCTACTATGGGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGTACCGAAAAG-TTTGA
* *
26921913 TCACGTGTGGAGTACTATGTACAGGCTACTACGTGAACCGAAAAGTTTGA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGTGTACCGAAAAGTTTGA
26921963 TCACGTGTGTAGTACTATGTGA-AGGCTACTACGT
1 TCACGTGTGTAGTACTATGT-ACAGGCTACTACGT
26921997 ATATTGAATG
Statistics
Matches: 110, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
46 3 0.03
47 2 0.02
49 3 0.03
50 66 0.60
51 34 0.31
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTACAGGCTACTACGTGTACCGAAAAGTTTGA
Found at i:26930131 original size:24 final size:24
Alignment explanation
Indices: 26930099--26930146 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
26930089 GTCTTTTACC
* *
26930099 ACCCTTAAAGGGCTTTCATATACT
1 ACCCCTAAAGGGATTTCATATACT
26930123 ACCCCTAAAGGGATTTCATATACT
1 ACCCCTAAAGGGATTTCATATACT
26930147 GGTGCGCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (24 bp):
ACCCCTAAAGGGATTTCATATACT
Found at i:26931838 original size:45 final size:45
Alignment explanation
Indices: 26931765--26931952 Score: 215
Period size: 45 Copynumber: 4.2 Consensus size: 45
26931755 TACTACGTGT
* * *
26931765 ACCGAGTACCATTGATTATAAAGGTGGTTGTTGTGTGCTAATTCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGTTATGTGCTGATTCC
* *
26931810 ACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGTTATGTGCTGATTCC
* * *
26931855 ACC-AGGTA-CTATTGATTCTGAAGGTAGTT-TCTATGTGCTGATTCC
1 ACCGA-GTATC-ATTGATTATAAAGGTGGTTGT-TATGTGCTGATTCC
* *
26931900 ACCGAGTATCATTGACTATAAGGGTGG-TGTTATGTGCTGA-TCC
1 ACCGAGTATCATTGATTATAAAGGTGGTTGTTATGTGCTGATTCC
*
26931943 ACCGTGTATC
1 ACCGAGTATC
26931953 TGTTATTATT
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
43 12 0.10
44 13 0.11
45 96 0.78
46 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (45 bp):
ACCGAGTATCATTGATTATAAAGGTGGTTGTTATGTGCTGATTCC
Found at i:26942997 original size:42 final size:42
Alignment explanation
Indices: 26942950--26943057 Score: 162
Period size: 42 Copynumber: 2.6 Consensus size: 42
26942940 ACGACCTAGC
*
26942950 ACACGGCCTGGCACACGGGCGTGTGGAATTACTTTAAAGGGT
1 ACACGGCCTGGCACACGGGCGTGTGGAATTACTTCAAAGGGT
* * *
26942992 ACACGGCCTGGCACATGGGTGTGTGGGATTACTTCAAAGGGT
1 ACACGGCCTGGCACACGGGCGTGTGGAATTACTTCAAAGGGT
* *
26943034 ACGCGGCCTGGCACACGAGCGTGT
1 ACACGGCCTGGCACACGGGCGTGT
26943058 AACTTGGTCG
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.20
Consensus pattern (42 bp):
ACACGGCCTGGCACACGGGCGTGTGGAATTACTTCAAAGGGT
Found at i:26949454 original size:172 final size:173
Alignment explanation
Indices: 26949168--26949508 Score: 630
Period size: 172 Copynumber: 2.0 Consensus size: 173
26949158 CATTTTGGCC
* *
26949168 TCGGTGGGGTTCAAACCCAGGACCTTAAAGGTCTTAAAGGGTAAAAATACTACCAGTTGGCTCTC
1 TCGGTGGGGTTCAAACCCAAGACCTTAAAAGTCTTAAAGGGTAAAAATACTACCAGTTGGCTCTC
*
26949233 ACCAGGTACGCCAAGGTAAGCATATAAGGCATTGGTTGATGGTTCGAT-CCCCGCAAGCGCACTT
66 ACCAGGTACGCCAAGGTAAGCATATAAGGCATTGGTTGATGGTTCGATCCCCCGAAAGCGCACTT
26949297 TTCATAATTAATTTCTAACAATACTGACATCTCTCCCGTGGGA
131 TTCATAATTAATTTCTAACAATACTGACATCTCTCCCGTGGGA
*
26949340 TCGGTGGGGTTTAAACCCAAGACCTTAAAAGTCTTAAAGGGTAAAAATACTACCAGTTGGCTCTC
1 TCGGTGGGGTTCAAACCCAAGACCTTAAAAGTCTTAAAGGGTAAAAATACTACCAGTTGGCTCTC
*
26949405 ACCAGGTACGCTAAGGTAAGCATATAAGGCATTGGTTGATGGTTCGATCCCCCGAAAGCGCACTT
66 ACCAGGTACGCCAAGGTAAGCATATAAGGCATTGGTTGATGGTTCGATCCCCCGAAAGCGCACTT
26949470 TTCATAATTAATTTCTAACAATACTGACATCTCTCCCGT
131 TTCATAATTAATTTCTAACAATACTGACATCTCTCCCGT
26949509 AAGATTGTAG
Statistics
Matches: 163, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
172 109 0.67
173 54 0.33
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (173 bp):
TCGGTGGGGTTCAAACCCAAGACCTTAAAAGTCTTAAAGGGTAAAAATACTACCAGTTGGCTCTC
ACCAGGTACGCCAAGGTAAGCATATAAGGCATTGGTTGATGGTTCGATCCCCCGAAAGCGCACTT
TTCATAATTAATTTCTAACAATACTGACATCTCTCCCGTGGGA
Found at i:26950126 original size:21 final size:21
Alignment explanation
Indices: 26950101--26950140 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26950091 AGCTCGGTAT
* *
26950101 TTATTTTTTGAAATTATAAAA
1 TTATTTTGTAAAATTATAAAA
26950122 TTATTTTGTAAAATTATAA
1 TTATTTTGTAAAATTATAA
26950141 TTATGTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
TTATTTTGTAAAATTATAAAA
Found at i:26951640 original size:15 final size:17
Alignment explanation
Indices: 26951620--26951666 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
26951610 TAAAAGCATC
*
26951620 TAAATTTAATAT-AA-T
1 TAAATTCAATATGAACT
26951635 TAAATTCAATATGAACT
1 TAAATTCAATATGAACT
26951652 TAAATCTCAA-ATGAA
1 TAAAT-TCAATATGAA
26951667 AAATGTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 11 0.39
16 2 0.07
17 11 0.39
18 4 0.14
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (17 bp):
TAAATTCAATATGAACT
Found at i:26954198 original size:28 final size:28
Alignment explanation
Indices: 26954158--26954326 Score: 141
Period size: 28 Copynumber: 6.0 Consensus size: 28
26954148 AAGCAGGAGA
*
26954158 AAAAACTGTAAAATCTAAAAAATAGGGG
1 AAAAACTATAAAATCTAAAAAATAGGGG
*
26954186 AAAAACTGTAAAATCATAAAAACAT--GGG
1 AAAAACTATAAAATC-TAAAAA-ATAGGGG
* *
26954214 AAAAATTGTAAAAT-TAGAAAAAATAGGGG
1 AAAAACTATAAAATCT--AAAAAATAGGGG
* * * *
26954243 CAAAACTATAAAATATGAGAAATA-GGG
1 AAAAACTATAAAATCTAAAAAATAGGGG
* * *
26954270 AAAAACTAT-AAATCTGAGAAATATGGG
1 AAAAACTATAAAATCTAAAAAATAGGGG
* *
26954297 AAAAACTATAAACTTTAAAAAAATAGGGG
1 AAAAACTATAAAATCT-AAAAAATAGGGG
26954326 A
1 A
26954327 CACGATCGTG
Statistics
Matches: 118, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
26 14 0.12
27 25 0.21
28 46 0.39
29 30 0.25
30 3 0.03
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (28 bp):
AAAAACTATAAAATCTAAAAAATAGGGG
Found at i:26954217 original size:57 final size:55
Alignment explanation
Indices: 26954158--26954324 Score: 169
Period size: 56 Copynumber: 3.0 Consensus size: 55
26954148 AAGCAGGAGA
*
26954158 AAAAACTGTAAAATCTAAAAAATAGGGGAAAAACTGTAAAATCATAAAAACAT-GGG
1 AAAAACTGTAAAATCTAAAAAATAGGGGAAAAACTATAAAAT-ATAAAAA-ATAGGG
* * * *
26954214 AAAAATTGTAAAAT-TAGAAAAAATAGGGGCAAAACTATAAAATATGAGAAATAGGG
1 AAAAACTGTAAAATCT--AAAAAATAGGGGAAAAACTATAAAATATAAAAAATAGGG
* * * * * *
26954270 AAAAACTAT-AAATCTGAGAAATATGGGAAAAACTATAAACTTTAAAAAAATAGGG
1 AAAAACTGTAAAATCTAAAAAATAGGGGAAAAACTATAAAATAT-AAAAAATAGGG
26954325 GACACGATCG
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
54 22 0.24
55 16 0.18
56 29 0.32
57 24 0.26
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (55 bp):
AAAAACTGTAAAATCTAAAAAATAGGGGAAAAACTATAAAATATAAAAAATAGGG
Found at i:26954282 original size:26 final size:27
Alignment explanation
Indices: 26954234--26954308 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
26954224 AAATTAGAAA
*
26954234 AAATAGGGGCAAAACTATAAAATATGAG
1 AAATAGGGGAAAAACTAT-AAATATGAG
*
26954262 AAATA-GGGAAAAACTATAAATCTGAG
1 AAATAGGGGAAAAACTATAAATATGAG
*
26954288 AAATATGGGAAAAACTATAAA
1 AAATAGGGGAAAAACTATAAA
26954309 CTTTAAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 13 0.30
27 26 0.59
28 5 0.11
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATAGGGGAAAAACTATAAATATGAG
Found at i:26962193 original size:28 final size:28
Alignment explanation
Indices: 26962135--26962211 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
26962125 AATATGGGTC
* * *
26962135 AAAACTATAAAATTTGAAAAATAAGGAT
1 AAAACTGTAAAATCTGAAAAACAAGGAT
*
26962163 AAAACTGTAAAATCTGAAAAACATGTG-T
1 AAAACTGTAAAATCTGAAAAACAAG-GAT
*
26962191 AAAACTGTAAAATCTAAAAAA
1 AAAACTGTAAAATCTGAAAAA
26962212 ATAGGGCACA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.23
Consensus pattern (28 bp):
AAAACTGTAAAATCTGAAAAACAAGGAT
Found at i:26980508 original size:16 final size:16
Alignment explanation
Indices: 26980487--26980538 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
26980477 TTTGGTTCGC
26980487 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26980503 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
26980519 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
26980535 TGTA
1 TGTA
26980539 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26980624 original size:39 final size:43
Alignment explanation
Indices: 26980519--26980628 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
26980509 GGATTAGAGG
26980519 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
26980564 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
26980604 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
26980629 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:26980791 original size:16 final size:16
Alignment explanation
Indices: 26980754--26980795 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
26980744 TTAATCATAT
*
26980754 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
26980770 TT-AAATATATTATAA
1 TTAAAATATATTATAA
26980785 TTAAAATATAT
1 TTAAAATATAT
26980796 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:26980802 original size:14 final size:15
Alignment explanation
Indices: 26980763--26980804 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26980753 TTTAAACATA
*
26980763 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26980778 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26980792 A-TATAATTTAATA
1 ATTATAATTAAATA
26980805 AAATCCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26981128 original size:47 final size:47
Alignment explanation
Indices: 26980996--26981134 Score: 128
Period size: 47 Copynumber: 3.0 Consensus size: 47
26980986 TATTTTTTTC
* *
26980996 ATATAATTTAATAATAATATATAATTTCATAAAATTATTGATAAT-A
1 ATATAATTTAATAATGATATATAATTTCATAAAATTATTAATAATAA
** * * * *
26981042 AT-T--TTTCTTATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATTTAATA-ATG-ATATATA-ATTTCATAAAATTATTAATAATAA
*
26981087 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTATTAATAATAA
26981134 A
1 A
26981135 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 15, Indels: 17
0.68 0.15 0.17
Matches are distributed among these distances:
43 5 0.07
44 15 0.22
45 13 0.19
46 12 0.17
47 19 0.28
48 5 0.07
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTATTAATAATAA
Found at i:26981131 original size:91 final size:92
Alignment explanation
Indices: 26980936--26981153 Score: 296
Period size: 92 Copynumber: 2.4 Consensus size: 92
26980926 AATTTAAAAT
* * * * * **
26980936 AATTA-TAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTTTTTTCATAT
1 AATTATTAA-TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTATATATTAAATAT
26981000 AATTTAATAATAATATATAATTTCATAA
65 AATTTAATAATAATATATAATTTCATAA
* *
26981028 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTA-ATATTAAATATA
1 AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTATATATTAAATATA
*
26981092 ATTTAATAATGATATATAATTTCATAA
66 ATTTAATAATAATATATAATTTCATAA
* *
26981119 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATTATTAATAAT-AAATTTTCTTATATGAATTTA
26981154 CTATAATCAA
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
91 45 0.41
92 63 0.57
93 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (92 bp):
AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTATATATTAAATATA
ATTTAATAATAATATATAATTTCATAA
Found at i:26986559 original size:223 final size:223
Alignment explanation
Indices: 26986166--26986621 Score: 885
Period size: 223 Copynumber: 2.0 Consensus size: 223
26986156 TGTGAACTCC
26986166 TTGACTTTTAATTATACAGTAATTACTGACTTTTTGCTTTGGGATTGATTTAAATCTTCTAATTT
1 TTGA-TTTTAATTATACAGTAATTACTGACTTTTTGCTTTGGGATTGATTTAAATCTTCTAATTT
*
26986231 CAATTTTGAAGTGTTTATAATTGAACTAACTGCCAAACTTGCTTAGCCTTTTATGGGAAACCAGG
65 CAATTTTGAAGTGTTTATAATTGAACTAACTGCCAAACTTGCTTAGCCTTTTAAGGGAAACCAGG
26986296 AGGGTTATGTACTGGTTAGGTTCTGAAACATGTTGGAAAATAAGTATAGATAGAAGAAGGTAGGG
130 AGGGTTATGTACTGGTTAGGTTCTGAAACATGTTGGAAAATAAGTATAGATAGAAGAAGGTAGGG
26986361 TTTTTATGTGCAATAGTGCGTTCACTGAA
195 TTTTTATGTGCAATAGTGCGTTCACTGAA
26986390 TTGATTTTAATTATACAGTAATTACTGACTTTTTGCTTTGGGATTGATTTAAATCTTCTAATTTC
1 TTGATTTTAATTATACAGTAATTACTGACTTTTTGCTTTGGGATTGATTTAAATCTTCTAATTTC
*
26986455 AATTTTGAAGTGTTTATAATTGAACTGACTGCCAAACTTGCTTAGCCTTTTAAGGGAAACCAGGA
66 AATTTTGAAGTGTTTATAATTGAACTAACTGCCAAACTTGCTTAGCCTTTTAAGGGAAACCAGGA
26986520 GGGTTATGTACTGGTTAGGTTCTGAAACATGTTGGAAAATAAGTATAGATAGAAGAAGGTAGGGT
131 GGGTTATGTACTGGTTAGGTTCTGAAACATGTTGGAAAATAAGTATAGATAGAAGAAGGTAGGGT
26986585 TTTTATGTGCAATAGTGCGTTCACTGAA
196 TTTTATGTGCAATAGTGCGTTCACTGAA
26986613 TTGATTTTA
1 TTGATTTTA
26986622 TTTGTGTCAA
Statistics
Matches: 230, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
223 226 0.98
224 4 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (223 bp):
TTGATTTTAATTATACAGTAATTACTGACTTTTTGCTTTGGGATTGATTTAAATCTTCTAATTTC
AATTTTGAAGTGTTTATAATTGAACTAACTGCCAAACTTGCTTAGCCTTTTAAGGGAAACCAGGA
GGGTTATGTACTGGTTAGGTTCTGAAACATGTTGGAAAATAAGTATAGATAGAAGAAGGTAGGGT
TTTTATGTGCAATAGTGCGTTCACTGAA
Found at i:26987342 original size:164 final size:164
Alignment explanation
Indices: 26987071--26987432 Score: 699
Period size: 164 Copynumber: 2.2 Consensus size: 164
26987061 AGAGTGAAAC
26987071 AAATCTGAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
1 AAATCTGAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
*
26987136 AGAAGAAAACTTGAAGAACCCATTAACTTATCAACAAGGAAATTAGAAAGTACAGTTCGAAAGCT
66 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAGGAAATTAGAAAGTACAGTTCGAAAGCT
26987201 TGAAGAAGCTGCAGCTAAGGCTTCAGCAACAAGG
131 TGAAGAAGCTGCAGCTAAGGCTTCAGCAACAAGG
26987235 AAATCTGAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
1 AAATCTGAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
26987300 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAGGAAATTAGAAAGTACAGTTCGAAAGCT
66 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAGGAAATTAGAAAGTACAGTTCGAAAGCT
26987365 TGAAGAAGCTGCAGCTAAGGCTTCAGCAACAAGG
131 TGAAGAAGCTGCAGCTAAGGCTTCAGCAACAAGG
*
26987399 AAATCTGAAGGGGATTAATTTACCAACAA-GAAAA
1 AAATCTGAAGGGGATTAACTTACCAACAAGGAAAA
26987433 TCGACAGAGG
Statistics
Matches: 196, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
163 5 0.03
164 191 0.97
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (164 bp):
AAATCTGAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAGGAAATTAGAAAGTACAGTTCGAAAGCT
TGAAGAAGCTGCAGCTAAGGCTTCAGCAACAAGG
Found at i:26989666 original size:126 final size:126
Alignment explanation
Indices: 26989481--26989834 Score: 591
Period size: 126 Copynumber: 2.8 Consensus size: 126
26989471 TAATTTTGAG
* ** *
26989481 TTGACTTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGGGAAGAATTTGTG
1 TTGACATTTCTGAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
26989546 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGGAAGAAACAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAACAATTATTTTT
* *
26989607 TTGACATTTTTGAGAAAATAGTATAAAATCACTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACATTTCTGAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
26989672 AAATCGCACCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAACAATTATTTTT
* * *
26989733 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATG
1 TTGACATTTCTGAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
26989798 AAATCACGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
26989835 CATGTTTGGG
Statistics
Matches: 212, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 212 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (126 bp):
TTGACATTTCTGAGAAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAACAATTATTTTT
Found at i:26992967 original size:61 final size:61
Alignment explanation
Indices: 26992896--26993084 Score: 160
Period size: 61 Copynumber: 3.2 Consensus size: 61
26992886 TCAAATTATA
*
26992896 TAAAATTATTAATTGTTAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATG
1 TAAAATTATTAATTGTTAGTAACAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATG
* * ** ** ** ** * * * *
26992957 TAAAATTATTAACT-CTAAAAATTGT-ATTAATGATTAGT-AAAAT-TATCA-AAT-T--ATA
1 TAAAATTATTAATTGTTAGTAACAGTCA--AAACATTTTTCCAAATCTAACATTATGTGAATG
*
26993012 TAAAATTATTAATTGTTAGTAACAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATG
1 TAAAATTATTAATTGTTAGTAACAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATG
26993073 TAAAATTATTAA
1 TAAAATTATTAA
26993085 CTTTGTTTAG
Statistics
Matches: 88, Mismatches: 30, Indels: 20
0.64 0.22 0.14
Matches are distributed among these distances:
55 21 0.24
56 10 0.11
57 6 0.07
58 3 0.03
59 6 0.07
60 9 0.10
61 33 0.38
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (61 bp):
TAAAATTATTAATTGTTAGTAACAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATG
Found at i:26993038 original size:116 final size:115
Alignment explanation
Indices: 26992848--26993086 Score: 424
Period size: 116 Copynumber: 2.1 Consensus size: 115
26992838 TGATAAATTG
* *
26992848 TATTAACTCAAAAAATTTTATAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGTT
1 TATTAACTCAAAAAATTGTATAATGATTAGTAAAATTATCAAATTATATAAAATTATTAATTGTT
* *
26992913 AGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 AGTAACAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
*
26992963 TATTAACTCTAAAAATTGTATTAATGATTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTA-TAATGATTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
26993028 TAGTAACAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
65 TAGTAACAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
26993079 TATTAACT
1 TATTAACT
26993087 TTGTTTAGGG
Statistics
Matches: 118, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
115 18 0.15
116 100 0.85
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (115 bp):
TATTAACTCAAAAAATTGTATAATGATTAGTAAAATTATCAAATTATATAAAATTATTAATTGTT
AGTAACAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:26993106 original size:23 final size:22
Alignment explanation
Indices: 26993091--26993580 Score: 228
Period size: 23 Copynumber: 20.8 Consensus size: 22
26993081 TTAACTTTGT
26993091 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATT-AATTAGG
* * **
26993114 CTAGGGTTTTAAAGTTAA-GGGG
1 TTAGGGTTTTTAA-TTAATTAGG
26993136 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATT-AATTAGG
*
26993159 TTAGGGTTTTTAA--AGTTAAGG
1 TTAGGGTTTTTAATTAATT-AGG
*
26993180 TTTAAGGTTTTTAAGTT-A--AGG
1 -TTAGGGTTTTTAA-TTAATTAGG
26993201 TTTAGGGTTTTTAATTAAATTAGG
1 -TTAGGGTTTTTAATT-AATTAGG
*
26993225 TTAGGGTTTTTAA--AGTTAAGG
1 TTAGGGTTTTTAATTAATT-AGG
*
26993246 TTTAAGGTTTTTAATTAAATTAGGTTAGGG
1 -TTAGGGTTTTTAATT--A--A--TTA-GG
26993276 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATT-AATTAGG
26993299 TTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATT-AATTAGG
* *
26993322 TTATGGTTTTTAA--AGTTAAGG
1 TTAGGGTTTTTAATTAATT-AGG
*
26993343 TTTAGGGTTTTTAAGTTAA--AGT
1 -TTAGGGTTTTTAA-TTAATTAGG
26993365 TTAGGGTTTTTAATTAAATTATGTTAGGG
1 TTAGGGTTTTTAATT--A--A--TTA-GG
26993394 TTAGGGTTTTTAATTAAATCAAGTTAGGG
1 TTAGGGTTTTTAA-T---T-AA-TTA-GG
*
26993423 TTAGGATTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATT-AATTAGG
26993446 TTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATT-AATTAGG
*
26993469 TTAGGGTTAGGGTTTTGTATTAAATTAGG
1 TTAGGG-T----TTTT-AATT-AATTAGG
26993498 TTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATT-AATTAGG
*
26993521 TTAGGGTTTTTAA--AGTTAAGG
1 TTAGGGTTTTTAATTAATT-AGG
*
26993542 TTTAGAGTTTTTAAGTT-A--AGG
1 -TTAGGGTTTTTAA-TTAATTAGG
26993563 TTTAGGGTTTTTAATTAA
1 -TTAGGGTTTTTAATTAA
26993581 ATTAAATCAG
Statistics
Matches: 378, Mismatches: 30, Indels: 120
0.72 0.06 0.23
Matches are distributed among these distances:
20 18 0.05
21 60 0.16
22 69 0.18
23 124 0.33
24 18 0.05
25 5 0.01
26 2 0.01
27 1 0.00
28 8 0.02
29 65 0.17
30 6 0.02
32 1 0.00
33 1 0.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (22 bp):
TTAGGGTTTTTAATTAATTAGG
Found at i:26993155 original size:45 final size:45
Alignment explanation
Indices: 26993091--26993198 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 45
26993081 TTAACTTTGT
26993091 TTAGGGTTTTTAATTAAATTAGGCTAGGG-TTTTAAAGTTAAGGGG
1 TTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAAAGTTAA-GGG
* *
26993136 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAAAGTTAAGGG
*
26993181 TTAAGGTTTTTAAGTTAA
1 TTAGGGTTTTTAA-TTAA
26993199 GGTTTAGGGT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
45 42 0.72
46 16 0.28
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (45 bp):
TTAGGGTTTTTAATTAAATTAGGCTAGGGTTTTTAAAGTTAAGGG
Found at i:26993190 original size:21 final size:21
Alignment explanation
Indices: 26993166--26993256 Score: 87
Period size: 21 Copynumber: 4.2 Consensus size: 21
26993156 AGGTTAGGGT
26993166 TTTTAAAGTTAAGGTTTAAGG
1 TTTTAAAGTTAAGGTTTAAGG
* *
26993187 TTTTTAAGTTAAGGTTTAGGG
1 TTTTAAAGTTAAGGTTTAAGG
* *
26993208 TTTTTAA-TTAAATTAGG-TTAGGG
1 TTTTAAAGTT--A--AGGTTTAAGG
26993231 TTTTTAAAGTTAAGGTTTAAGG
1 -TTTTAAAGTTAAGGTTTAAGG
26993253 TTTT
1 TTTT
26993257 TAATTAAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
20 2 0.03
21 33 0.56
22 6 0.10
23 7 0.12
24 9 0.15
25 2 0.03
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (21 bp):
TTTTAAAGTTAAGGTTTAAGG
Found at i:26993226 original size:45 final size:45
Alignment explanation
Indices: 26993185--26993560 Score: 220
Period size: 52 Copynumber: 7.8 Consensus size: 45
26993175 TAAGGTTTAA
26993185 GGTTTTT-AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
*
26993229 GGTTTTTAAAGTTAAGGTTTAAGGTTTTTAATTAAATTAGGTTAG
1 GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
* *
26993274 GGTTAGGGTTTTTAA-TTAAATTAGG-TTAGGGTTTTGT-ATTAAATTAGGTTAT
1 GG-T----TTTTAAAGTT--A--AGGTTTAGGGTTTT-TAATTAAATTAGGTTAG
*
26993326 GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTT-AA--AGTTTAG
1 GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAA-TTAAATTAGGTTAG
* *
26993369 GGTTTTTAATTAAATTATGTTAGGGTTAGGGTTTTTAATTAAATCAAGTTAGGGTTAG
1 GGTTTTT-A--AAGTTA----AGGTTTAGGGTTTTTAATT--A--AA-TTA-GGTTAG
* *
26993427 GATTTTTAATTAAATT-AGG-TTAGGGTTTTGT-ATTAAATTAGGTTAGGGTTAG
1 GGTTTTT-A--AAGTTAAGGTTTAGGGTTTT-TAATT-AA--A--TTA-GGTTAG
*
26993479 GGTTTTGTATTAAATT-AGG-TTAGGGTTTTGT-ATTAAATTAGGTTAG
1 GGTTTT-TA--AAGTTAAGGTTTAGGGTTTT-TAATTAAATTAGGTTAG
*
26993525 GGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAA
1 GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAA-TTAA
26993561 GGTTTAGGGT
Statistics
Matches: 278, Mismatches: 14, Indels: 78
0.75 0.04 0.21
Matches are distributed among these distances:
43 16 0.06
44 16 0.06
45 63 0.23
46 25 0.09
47 9 0.03
48 2 0.01
49 6 0.02
50 22 0.08
51 7 0.03
52 80 0.29
53 9 0.03
54 2 0.01
57 1 0.00
58 20 0.07
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.47
Consensus pattern (45 bp):
GGTTTTTAAAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAG
Found at i:26993284 original size:29 final size:29
Alignment explanation
Indices: 26993251--26993635 Score: 194
Period size: 29 Copynumber: 13.1 Consensus size: 29
26993241 TAAGGTTTAA
26993251 GGTTTTTAATTAAATTAGGTTAGGGTTAG
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
*
26993280 GGTTTTTAATTAAATTAGGTTAGGGTT-T
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
* * * ** ** *
26993308 TGTATTAAATTAGGTTATGGTTTTTAAAGTTAA
1 GGTTTTTAATTAAATTA-GG---TTAGGGTTAG
**** * * * *
26993341 GGTTTAGGGTT--TTTAAGTTAAAGTTTAG
1 GGTTTTTAATTAAATTAGGTT-AGGGTTAG
*
26993369 GGTTTTTAATTAAATTATGTTAGGGTTAG
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
* *
26993398 GGTTTTTAATTAAATCAAGTTAGGGTTAG
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
*
26993427 GATTTTTAATTAAATTAGGTTAGGG-T--
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
*
26993453 --TTTGT-ATTAAATTAGGTTAGGGTTAG
1 GGTTTTTAATTAAATTAGGTTAGGGTTAG
26993479 GGTTTTGT-ATTAAATTAGGTTAGGG-T--
1 GGTTTT-TAATTAAATTAGGTTAGGGTTAG
* *
26993505 --TTTGT-ATTAAATTAGGTTAGGGTTTTTAA
1 GGTTTTTAATTAAATTAGGTTAGGG---TTAG
* * * *
26993534 AGTTAAGGTTTAGAGTT--TTTAAGTTAAGGTTTAG
1 GGTT----TTTA-A-TTAAATTAGGTT-AGGGTTAG
26993568 GGTTTTTAATTAAATTAAATCAGGTTAGGGTTAG
1 GGTTTTTAATTAAA-T---T-AGGTTAGGGTTAG
26993602 GGTTTTTAATTAAATTAGGTTAGGGTTTAG
1 GGTTTTTAATTAAATTAGGTTAGGG-TTAG
26993632 GGTT
1 GGTT
26993636 AAATTAGGTT
Statistics
Matches: 273, Mismatches: 45, Indels: 75
0.69 0.11 0.19
Matches are distributed among these distances:
23 35 0.13
24 8 0.03
27 3 0.01
28 31 0.11
29 112 0.41
30 20 0.07
31 6 0.02
32 6 0.02
33 6 0.02
34 28 0.10
35 6 0.02
36 6 0.02
37 4 0.01
38 2 0.01
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (29 bp):
GGTTTTTAATTAAATTAGGTTAGGGTTAG
Found at i:26993493 original size:199 final size:201
Alignment explanation
Indices: 26993251--26993628 Score: 638
Period size: 199 Copynumber: 1.9 Consensus size: 201
26993241 TAAGGTTTAA
26993251 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGTATTAA
1 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGTATTAA
* *
26993316 ATTAGGTTATGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAAGTTTAGGGTTTTTAATTA
66 ATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAAGTTTAGGGTTTTTAATTA
26993381 AATT-AT-GTTAGGGTTAGGGTTTTTAATTAAATCAAGTTAGGGTTAGGATTTTTAATTAAATTA
131 AATTAATAGTTAGGGTTAGGGTTTTTAATTAAATCAAGTTAGGGTTAGGATTTTTAATTAAATTA
26993444 GGTTAG
196 GGTTAG
26993450 GGTTTTGT-ATTAAATTAGGTTAGGGTTAGGGTTTTGT-ATTAAATTAGGTTAGGGTTTTGTATT
1 GGTTTT-TAATTAAATTAGGTTAGGGTTAGGGTTTT-TAATTAAATTAGGTTAGGGTTTTGTATT
*
26993513 AAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTAGGGTTTTTAAT
64 AAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAAGTTTAGGGTTTTTAAT
* *
26993578 TAAATTAAATCAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
129 TAAATT-AAT-A-GTTAGGGTTAGGGTTTTTAATTAAATCAAGTTAGGGTT
26993629 TAGGGTTAAA
Statistics
Matches: 167, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
199 127 0.76
200 2 0.01
201 2 0.01
204 36 0.22
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (201 bp):
GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGTATTAA
ATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAAGTTTAGGGTTTTTAATTA
AATTAATAGTTAGGGTTAGGGTTTTTAATTAAATCAAGTTAGGGTTAGGATTTTTAATTAAATTA
GGTTAG
Found at i:26993551 original size:22 final size:22
Alignment explanation
Indices: 26993521--26993576 Score: 96
Period size: 21 Copynumber: 2.6 Consensus size: 22
26993511 TTAAATTAGG
26993521 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
*
26993543 TTAGAGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
26993564 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
26993577 TTAAATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:26993623 original size:23 final size:23
Alignment explanation
Indices: 26993596--26993655 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
26993586 ATCAGGTTAG
26993596 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
****
26993619 GGTTAGGGTTTAGGGTTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
26993642 GGTTAGGGTTTTTA
1 GGTTAGGGTTTTTA
26993656 TTACATCAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:26993679 original size:25 final size:25
Alignment explanation
Indices: 26993651--26993788 Score: 155
Period size: 25 Copynumber: 5.7 Consensus size: 25
26993641 AGGTTAGGGT
*
26993651 TTTTATTACATCAAATAAACTTATA
1 TTTTATTACATCAAATAAACTTCTA
26993676 TTTTATTACATCAAAT-AA----TA
1 TTTTATTACATCAAATAAACTTCTA
*** * *
26993696 TGAAAATA-ACTCGAAA-AAATTTCTA
1 TTTTATTACA-TC-AAATAAACTTCTA
26993721 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
26993746 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
26993771 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
26993789 TATCAAAATA
Statistics
Matches: 95, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.01
20 8 0.08
21 5 0.05
24 5 0.05
25 75 0.79
26 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.41
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:26993738 original size:45 final size:44
Alignment explanation
Indices: 26993674--26993841 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 44
26993664 AATAAACTTA
*
26993674 TATTTTATTACATCAAATAATATGAAAATAACTCGAAAAAATTTC
1 TATTTTATTACATCAAATAATATCAAAATAACTC-AAAAAATTTC
** * *
26993719 TATTTTATTACATCAAATAA-ACTTCTATTTTATTACATCAAATAAACTTC
1 TATTTTATTACATCAAATAATA--TC-A--AAATAAC-TCAAA-AAATTTC
26993769 TATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTC
1 TATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTC
*
26993813 TATTTT-TTACATAAAATAATATCAAAATA
1 TATTTTATTACATCAAATAATATCAAAATA
26993842 TTCAAAATAT
Statistics
Matches: 105, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
43 22 0.21
44 13 0.12
45 25 0.24
46 5 0.05
47 1 0.01
48 1 0.01
49 9 0.09
50 28 0.27
51 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (44 bp):
TATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATTTC
Found at i:26994960 original size:7 final size:7
Alignment explanation
Indices: 26994950--26994974 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26994940 TTATATACAT
26994950 AATACTA
1 AATACTA
26994957 AATACTA
1 AATACTA
26994964 AATACTA
1 AATACTA
26994971 AATA
1 AATA
26994975 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:26996169 original size:51 final size:51
Alignment explanation
Indices: 26996114--26996229 Score: 196
Period size: 51 Copynumber: 2.3 Consensus size: 51
26996104 TATTTTAAAA
*
26996114 AAGGAAATTGAGAGCAAATTGAAATTAAATATGGATTTCAAAGAATTTTGG
1 AAGGAAATTGAGAGCAAACTGAAATTAAATATGGATTTCAAAGAATTTTGG
* * *
26996165 AAGGAAATTGAGAGGAAACTGAAATTAAATATGGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGCAAACTGAAATTAAATATGGATTTCAAAGAATTTTGG
26996216 AAGGAAATTGAGAG
1 AAGGAAATTGAGAG
26996230 AATTTTGGAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.45, C:0.03, G:0.26, T:0.27
Consensus pattern (51 bp):
AAGGAAATTGAGAGCAAACTGAAATTAAATATGGATTTCAAAGAATTTTGG
Found at i:26996226 original size:22 final size:22
Alignment explanation
Indices: 26996201--26996251 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
26996191 AAATATGGAT
26996201 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* *
26996223 TTGAGAGAATTTTGGATGGAAT
1 TTGAGAGAATTTTGGAAGGAAA
26996245 TTGAGAG
1 TTGAGAG
26996252 GAAATTGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.31
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:26996257 original size:12 final size:12
Alignment explanation
Indices: 26996199--26996274 Score: 58
Period size: 11 Copynumber: 6.8 Consensus size: 12
26996189 TTAAATATGG
26996199 ATTTGAGA-GAA
1 ATTTGAGAGGAA
*
26996210 TTTTG-GAAGGAA
1 ATTTGAG-AGGAA
26996222 A-TTGAGA-GAA
1 ATTTGAGAGGAA
*
26996232 TTTTG-GATGG-A
1 ATTTGAGA-GGAA
26996243 ATTTGAGAGGAA
1 ATTTGAGAGGAA
26996255 A-TTGAGAGGAA
1 ATTTGAGAGGAA
*
26996266 ATATGAGAG
1 ATTTGAGAG
26996275 AGGATTTGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
10 6 0.12
11 30 0.59
12 15 0.29
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.28
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:27001570 original size:42 final size:42
Alignment explanation
Indices: 27001510--27001592 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
27001500 GATTTACCGT
*
27001510 GAGAATTTCGTTCATGTGTTCTTCCACGATCATCATCAGCAC
1 GAGAATTTCGTTCATGTGTCCTTCCACGATCATCATCAGCAC
* * * * *
27001552 GAGAATTTTGTTCTTGTGTCCTTCTATGATTATCATCAGCA
1 GAGAATTTCGTTCATGTGTCCTTCCACGATCATCATCAGCA
27001593 TTTCGATCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (42 bp):
GAGAATTTCGTTCATGTGTCCTTCCACGATCATCATCAGCAC
Found at i:27007444 original size:20 final size:20
Alignment explanation
Indices: 27007419--27007464 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
27007409 TAACAAGGAT
27007419 GATGATAAAAGAAGATCACA
1 GATGATAAAAGAAGATCACA
27007439 GATGATAAAAGAAGATCACA
1 GATGATAAAAGAAGATCACA
27007459 GA-GATA
1 GATGATA
27007465 GTCACGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.54, C:0.09, G:0.22, T:0.15
Consensus pattern (20 bp):
GATGATAAAAGAAGATCACA
Found at i:27009991 original size:25 final size:25
Alignment explanation
Indices: 27009959--27010017 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
27009949 AGCTGTAAAC
27009959 GGTAAGCTCCTTTGAGCTGAATAAT
1 GGTAAGCTCCTTTGAGCTGAATAAT
27009984 GGTAAGCTCCTTTGAGCTGAATAAT
1 GGTAAGCTCCTTTGAGCTGAATAAT
27010009 GGTAAGCTC
1 GGTAAGCTC
27010018 ATAAGAGCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (25 bp):
GGTAAGCTCCTTTGAGCTGAATAAT
Found at i:27010025 original size:25 final size:25
Alignment explanation
Indices: 27009940--27010029 Score: 101
Period size: 25 Copynumber: 3.6 Consensus size: 25
27009930 GTACATGTAT
* * *
27009940 GCTCATACGAGCTGTA-AACGGTAA
1 GCTCATATGAGCTGAATAATGGTAA
* *
27009964 GCTCCTTTGAGCTGAATAATGGTAA
1 GCTCATATGAGCTGAATAATGGTAA
* *
27009989 GCTCCTTTGAGCTGAATAATGGTAA
1 GCTCATATGAGCTGAATAATGGTAA
*
27010014 GCTCATAAGAGCTGAA
1 GCTCATATGAGCTGAA
27010030 ATCGGTAACC
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 12 0.21
25 45 0.79
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
GCTCATATGAGCTGAATAATGGTAA
Found at i:27012492 original size:30 final size:30
Alignment explanation
Indices: 27012456--27012516 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
27012446 GCCTAAAATG
* *
27012456 TAAGACAATAATCACTAACTGCTACTCTAA
1 TAAGACAATAATCACGAACCGCTACTCTAA
*
27012486 TAAGACAATAATCACGAGCCGCTACTCTAA
1 TAAGACAATAATCACGAACCGCTACTCTAA
27012516 T
1 T
27012517 CTTCGGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.25
Consensus pattern (30 bp):
TAAGACAATAATCACGAACCGCTACTCTAA
Found at i:27015245 original size:14 final size:14
Alignment explanation
Indices: 27015226--27015254 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27015216 CATTTCTTGG
27015226 TCGGTTCAGTTCAA
1 TCGGTTCAGTTCAA
27015240 TCGGTTCAGTTCAA
1 TCGGTTCAGTTCAA
27015254 T
1 T
27015255 TGAACCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (14 bp):
TCGGTTCAGTTCAA
Found at i:27016475 original size:70 final size:70
Alignment explanation
Indices: 27016401--27016843 Score: 451
Period size: 70 Copynumber: 6.3 Consensus size: 70
27016391 TTATAGTCGG
* ** *
27016401 GAGCTTTTAACTCTCGCTAACTGTGTGGGGGCTGCGGTATTAAACCTATGAGCCTTAAAATGATA
1 GAGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGACA
27016466 GCTGA
66 GCTGA
* * * * * * * *
27016471 GAGCTTTTTAACTCTCGTTAACTATTTGGAGGTTGTGGTATTAAATCTGCGACCCTTAAAATGAA
1 GAGC-TTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGAC
*
27016536 AACTGA
65 AGCTGA
* * *
27016542 GAGCTTTTAACTCTCGCTGACTATTT-GGGGCTGCGGTATTAAACTTGCGAGCCTTAAAATGACA
1 GAGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGACA
**
27016606 ATTG-
66 GCTGA
* * * * * * * *
27016610 GAAGCTTTTAAATTTTGTTAACTGTTTGGGGGCTGCGTTATTAAACCTGCGAGTCTTAAAAAGAT
1 G-AGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGAC
*
27016675 AGTTGA
65 AGCTGA
* * * ** * * * *
27016681 GAGCTTTTAACTCTCACTAACTGTTTAGAGATTGTGGTACTAAACCTGCGAGCTTTAAAATAACA
1 GAGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGACA
* *
27016746 GTTAA
66 GCTGA
* * * * *
27016751 GAGCTTTTAACTCTCGCTAACTATTTGGGGGCTGTGATATTAAACCTACAAGCCTT-AAATGACA
1 GAGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGACA
*
27016815 GCTGG
66 GCTGA
27016820 GAGCTTTTAACTCTCGCTAACTGT
1 GAGCTTTTAACTCTCGCTAACTGT
27016844 CTGGAGTTTC
Statistics
Matches: 301, Mismatches: 68, Indels: 9
0.80 0.18 0.02
Matches are distributed among these distances:
68 1 0.00
69 85 0.28
70 156 0.52
71 59 0.20
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (70 bp):
GAGCTTTTAACTCTCGCTAACTGTTTGGGGGCTGCGGTATTAAACCTGCGAGCCTTAAAATGACA
GCTGA
Found at i:27022225 original size:15 final size:15
Alignment explanation
Indices: 27022205--27022234 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27022195 TGATCGGAGA
27022205 AAAGAAAATCAAACT
1 AAAGAAAATCAAACT
*
27022220 AAAGAAAATGAAACT
1 AAAGAAAATCAAACT
27022235 TGAAGAGCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.10, G:0.10, T:0.13
Consensus pattern (15 bp):
AAAGAAAATCAAACT
Found at i:27022507 original size:332 final size:332
Alignment explanation
Indices: 27021901--27022534 Score: 1223
Period size: 332 Copynumber: 1.9 Consensus size: 332
27021891 CTTATTTGCT
*
27021901 CTTGAAGAGCAAAGAACTGTTGTGGGGGTTCCTCTTGGCTAGGAGGAAGTGATAACCCTTGATTG
1 CTTGAAGAGCAAAGAACTGTTGTGGGGGTTCCTCTTGGCTAGGAGGAAGCGATAACCCTTGATTG
* *
27021966 GCAGAAACATTCAAGTCTAGAAGACCAGAAACTCCTTAATAAACTGCATTGTCGAATTTCTCCAG
66 GCAGAAACATTCAAGTCTAGAAGACCAGAAACTCCTTAATAAACTGCACTGTCGAAGTTCTCCAG
*
27022031 TTTATTGGCAAACCATCCAACAAACAAATCCGTTTCATTGTGCTGACTGCTGGAACTTGATGCTC
131 TCTATTGGCAAACCATCCAACAAACAAATCCGTTTCATTGTGCTGACTGCTGGAACTTGATGCTC
*
27022096 CAGCCTGTCTTGACGAAAGGTTGAAGGGGAAATTCTCATTTGAGTGAGCCATTTCTATTCTGAAA
196 CAGCCTATCTTGACGAAAGGTTGAAGGGGAAATTCTCATTTGAGTGAGCCATTTCTATTCTGAAA
27022161 CTTGAGAAAAGAAAATCAAACTAAAGAAATCTGATGATCGGAGAAAAGAAAATCAAACTAAAGAA
261 CTTGAGAAAAGAAAATCAAACTAAAGAAATCTGATGATCGGAGAAAAGAAAATCAAACTAAAGAA
27022226 AATGAAA
326 AATGAAA
27022233 CTTGAAGAGCAAAGAACTGTTGTGGGGGTTCCTCTTGGCTAGGAGGAAGCGATAACCCTTGATTG
1 CTTGAAGAGCAAAGAACTGTTGTGGGGGTTCCTCTTGGCTAGGAGGAAGCGATAACCCTTGATTG
27022298 GCAGAAACATTCAAGTCTAGAAGACCAGAAACTCCTTAATAAACTGCACTGTCGAAGTTCTCCAG
66 GCAGAAACATTCAAGTCTAGAAGACCAGAAACTCCTTAATAAACTGCACTGTCGAAGTTCTCCAG
27022363 TCTATTGGCAAACCATCCAACAAACAAATCCGTTTCATTGTGCTGACTGCTGGAACTTGATGCTC
131 TCTATTGGCAAACCATCCAACAAACAAATCCGTTTCATTGTGCTGACTGCTGGAACTTGATGCTC
27022428 CAGCCTATCTTGACGAAAGGTTGAAGGGGAAATTCTCATTTGAGTGAGCCATTTCTATTCTGAAA
196 CAGCCTATCTTGACGAAAGGTTGAAGGGGAAATTCTCATTTGAGTGAGCCATTTCTATTCTGAAA
27022493 CTTGAGAAAAGAAAATCAAACTAAAGAAATCTGATGATCGGA
261 CTTGAGAAAAGAAAATCAAACTAAAGAAATCTGATGATCGGA
27022535 AGTTCATCCA
Statistics
Matches: 297, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
332 297 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (332 bp):
CTTGAAGAGCAAAGAACTGTTGTGGGGGTTCCTCTTGGCTAGGAGGAAGCGATAACCCTTGATTG
GCAGAAACATTCAAGTCTAGAAGACCAGAAACTCCTTAATAAACTGCACTGTCGAAGTTCTCCAG
TCTATTGGCAAACCATCCAACAAACAAATCCGTTTCATTGTGCTGACTGCTGGAACTTGATGCTC
CAGCCTATCTTGACGAAAGGTTGAAGGGGAAATTCTCATTTGAGTGAGCCATTTCTATTCTGAAA
CTTGAGAAAAGAAAATCAAACTAAAGAAATCTGATGATCGGAGAAAAGAAAATCAAACTAAAGAA
AATGAAA
Found at i:27028582 original size:46 final size:46
Alignment explanation
Indices: 27028514--27028804 Score: 465
Period size: 46 Copynumber: 6.3 Consensus size: 46
27028504 TACCCTGTTT
*
27028514 TGGACAGCATTTATACATCAAATTGGACAGCATTAATATGCTCAAAA
1 TGGACAGCA-TTATACATCAAATTGGACAGCATCAATATGCTCAAAA
27028561 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * *
27028607 TGGACAGCATTATACATCAAATTGGACAGCTTTAATATGCTCAAAT
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
27028653 TGGACAGCATTATACATCAAATTGGTCAGCATCAATATTCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* *
27028699 TGGACAGTATTATACATCAAATTGGACAGCATCAATATACTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
* * * *
27028745 TGGACAACATTATGCAACAAATTGGACAGCATCAATCTGCTCAAAA
1 TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
27028791 TGGACAGCATTATA
1 TGGACAGCATTATA
27028805 ACATATAAAA
Statistics
Matches: 224, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
46 215 0.96
47 9 0.04
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (46 bp):
TGGACAGCATTATACATCAAATTGGACAGCATCAATATGCTCAAAA
Found at i:27029544 original size:41 final size:41
Alignment explanation
Indices: 27029494--27029590 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 41
27029484 GCCATCGTAC
* * *
27029494 AGCCGAAGCTAT-TATAATCTCGCACACTAAGTGCCTTACAT
1 AGCCGAAGCTATCT-CAATCTCGCACACTAAGTGCCATAAAT
*
27029535 AGTCGAAGCTATCTCAATCTCGCACACTAAGTGCCATAAAT
1 AGCCGAAGCTATCTCAATCTCGCACACTAAGTGCCATAAAT
27029576 AGCCGAAGCTATCTC
1 AGCCGAAGCTATCTC
27029591 GAATTTCATA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 49 0.98
42 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (41 bp):
AGCCGAAGCTATCTCAATCTCGCACACTAAGTGCCATAAAT
Found at i:27046681 original size:20 final size:20
Alignment explanation
Indices: 27046643--27046682 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
27046633 TACCTCCCTC
* *
27046643 GGGGAAGCTTACCGGACAAT
1 GGGGAAGCTTAACGCACAAT
*
27046663 GGGGAGGCTTAACGCACAAT
1 GGGGAAGCTTAACGCACAAT
27046683 AAAGTAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.35, T:0.15
Consensus pattern (20 bp):
GGGGAAGCTTAACGCACAAT
Found at i:27050779 original size:5 final size:5
Alignment explanation
Indices: 27050763--27050792 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
27050753 TGTTGCATTT
27050763 TTAAA TTAAAA TTAAA TTAAA TTAAA TTAA
1 TTAAA TT-AAA TTAAA TTAAA TTAAA TTAA
27050793 TTTTTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TTAAA
Found at i:27052732 original size:16 final size:16
Alignment explanation
Indices: 27052711--27052743 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27052701 TTAATCTACA
27052711 GTTTTTATTAT-TATAT
1 GTTTTT-TTATCTATAT
27052727 GTTTTTTTATCTATAT
1 GTTTTTTTATCTATAT
27052743 G
1 G
27052744 CTAAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.67
Consensus pattern (16 bp):
GTTTTTTTATCTATAT
Found at i:27066205 original size:45 final size:44
Alignment explanation
Indices: 27066100--27067016 Score: 312
Period size: 44 Copynumber: 21.2 Consensus size: 44
27066090 TCGCATTTAG
* * *
27066100 TCTTATCTCCCAGAAGTTACAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
27066144 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* *
27066189 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * * * * * * **
27066233 TCCTATCTCTCTGAAGTTACAATGGAGCGGATTAA--AACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
27066277 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * * *
27066317 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* ** * * *
27066361 TCTTATC-CTCTTGAAGTTATAGT-AAGGTAGACTAAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* * * * *
27066406 TCTTATCTCCCTGAGGTTGCAGTAGAGTAGATTAAAGT-CG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-AA
* * * * * * **
27066450 TCCTATCTCCCTAAATTTGCAGTGGAGCGGATTAA--AACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * ** * *
27066494 TTTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATTTAG----
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGTAAGCAAA
* * *
27066534 TCTTATCTCCCGGAAGTTGCAGTGGAGTAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
27066578 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* *
27066623 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-TTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * * **
27066667 T-TCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA--AACCTTGGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
27066711 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
27066751 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
27066795 TCTTATC-CTCCTGAAGTTGCAGT-GAGACAGATTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAG-CAGACT-AAGTA-AGCAAA
* * * * *
27066840 TCTTATCTCCCTGAGGTTACAGTGGAGTAGA-TTA--AAGCTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * * * * **
27066881 TCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAA--AATCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * * * *
27066925 TCTTATCTCTCTAAATTTGCAG-AGAGCAGA-TCA--CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
27066965 TCTTATCTCCCTGAAGTTGCAGTGGAGCTGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
27067009 TCTTATCT
1 TCTTATCT
27067017 TTCTGAATTC
Statistics
Matches: 652, Mismatches: 154, Indels: 134
0.69 0.16 0.14
Matches are distributed among these distances:
40 84 0.13
41 56 0.09
42 25 0.04
43 46 0.07
44 294 0.45
45 134 0.21
46 13 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
Found at i:27066401 original size:217 final size:217
Alignment explanation
Indices: 27066012--27067015 Score: 1638
Period size: 217 Copynumber: 4.6 Consensus size: 217
27066002 TCGGTGGCCA
27066012 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
27066077 TGCAGAGAGCAGATCGCATTTAGTCTTATCTCCCAGAAGTTACAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
27066142 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
27066207 GCAGTGGAGTAGATTAAAGCCG
196 GCAGTGGAGTAGATTAAAGCCG
* * *
27066229 ATAATCCTATCTCTCTGAAGTTACAATGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
27066294 TGCAGAGAGCAGATCGCATCTAGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAACA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
* ** * * * *
27066359 AGTCTTATCCTCTTGAAGTTATAGTAAGGTAGACTAAAGATGGCAAATCTTATCTCCCTGAGGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
27066424 GCAGTAGAGTAGATTAAAGTCG
196 GCAGTGGAGTAGATTAAAGCCG
* * *
27066446 ATAATCCTATCTCCCTAAATTTGCAGTGGAGCGGATTAAAACCTTGGATTTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
27066511 TGCAGAGAGCAGATCGCATTTAGTCTTATCTCCCGGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
27066576 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
27066641 GTAGTGGAGCAGATTAAAGCCG
196 GCAGTGGAGTAGATTAAAGCCG
*
27066663 ATAATTCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
27066728 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
* * *
27066793 AGTCTTATCCTCCTGAAGTTGCAGTGAGACAGATTGAAGATGGCAAATCTTATCTCCCTGAGGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
27066858 ACAGTGGAGTAGATTAAAG-C-
196 GCAGTGGAGTAGATTAAAGCCG
* * * *
27066878 -TAATCCTATCTCCCTGAAGTTGCAGTGGAACGGATTAAAATCTTGGATCTTATCTCTCTAAATT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
*
27066942 TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCT-GACTAAGTAAGC
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG-TAGACTAAGTAAGC
27067006 AAGTCTTATC
130 AAGTCTTATC
27067016 TTTCTGAATT
Statistics
Matches: 725, Mismatches: 61, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
214 129 0.18
216 1 0.00
217 595 0.82
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCA
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGTAGATTAAAGCCG
Found at i:27066799 original size:84 final size:85
Alignment explanation
Indices: 27066670--27066826 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 85
27066660 CCGATAATTC
* * * **
27066670 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTAT-CTCTCTGAAGTTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATCTTATCCTC-CTGAAGTTGCAGA
27066734 GAG-CAGATCGCATCTAGTCT
65 GAGACAGATCGCATCTAGTCT
27066754 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAAC-AAG-TCTTATCCTCCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAACTAAGATCTTATCCTCCTGAAGTTGCAG
*
27066817 TGAGACAGAT
64 AGAGACAGAT
27066827 TGAAGATGGC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
84 51 0.81
85 9 0.14
86 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATCTTATCCTCCTGAAGTTGCAGAG
AGACAGATCGCATCTAGTCT
Found at i:27067759 original size:16 final size:16
Alignment explanation
Indices: 27067738--27067770 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27067728 TTCATCTACA
27067738 GTTTTTATTAT-TATAT
1 GTTTTT-TTATCTATAT
27067754 GTTTTTTTATCTATAT
1 GTTTTTTTATCTATAT
27067770 G
1 G
27067771 CTAAGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.67
Consensus pattern (16 bp):
GTTTTTTTATCTATAT
Found at i:27075131 original size:12 final size:12
Alignment explanation
Indices: 27075116--27075143 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
27075106 AAATTTAATT
27075116 AATTATTTATTA
1 AATTATTTATTA
27075128 AATTATTTATTA
1 AATTATTTATTA
27075140 AATT
1 AATT
27075144 TAATTAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTATTTATTA
Found at i:27075528 original size:17 final size:18
Alignment explanation
Indices: 27075506--27075539 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27075496 TTCTTTATTG
27075506 CTTTTT-AGGGAAAAACA
1 CTTTTTAAGGGAAAAACA
*
27075523 CTTTTTAATGGAAAAAC
1 CTTTTTAAGGGAAAAAC
27075540 TCATCTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (18 bp):
CTTTTTAAGGGAAAAACA
Found at i:27075895 original size:149 final size:148
Alignment explanation
Indices: 27075637--27075936 Score: 591
Period size: 149 Copynumber: 2.0 Consensus size: 148
27075627 TTTATCCTAA
27075637 AGAGTAACAACCAAGTGGCAATTAATTTGATTAATCATTGAAAATATTTTAAGGGTTTTAAGAAG
1 AGAGTAACAACCAAGTGGCAATTAATTTGATTAATCATTGAAAATATTTTAAGGGTTTTAAGAAG
27075702 AGAATGACAAAATTAACTTTAAATACCACAATCCCAAAATGCTTTTTTTTTCTATATTTAGGGAA
66 AGAATGACAAAATTAACTTTAAATACCACAATCCCAAAATGC-TTTTTTTTCTATATTTAGGGAA
27075767 ATAAACTAATTTTGGAGAG
130 ATAAACTAATTTTGGAGAG
27075786 AGAGTAACAACCAAGTGGCAATTAATTTGATTAATCATTGAAAATATTTTAAGGGTTTTAAGAAG
1 AGAGTAACAACCAAGTGGCAATTAATTTGATTAATCATTGAAAATATTTTAAGGGTTTTAAGAAG
27075851 AGAATGACAAAATTAACTTTAAATACCACAATCCCAAAATGCTTTTTTTTCTATATTTAGGGAAA
66 AGAATGACAAAATTAACTTTAAATACCACAATCCCAAAATGCTTTTTTTTCTATATTTAGGGAAA
27075916 TAAACTAATTTTGGAGAG
131 TAAACTAATTTTGGAGAG
27075934 AGA
1 AGA
27075937 AGCAAAAAAT
Statistics
Matches: 151, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
148 44 0.29
149 107 0.71
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (148 bp):
AGAGTAACAACCAAGTGGCAATTAATTTGATTAATCATTGAAAATATTTTAAGGGTTTTAAGAAG
AGAATGACAAAATTAACTTTAAATACCACAATCCCAAAATGCTTTTTTTTCTATATTTAGGGAAA
TAAACTAATTTTGGAGAG
Found at i:27077357 original size:30 final size:30
Alignment explanation
Indices: 27077298--27077371 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
27077288 TTCCTGGGAT
*** *
27077298 AGGATGTTTGAAAATTATCTTGGGTTTCCC
1 AGGATGTTTGAAAATTATCTCAAGATTCCC
27077328 AGGATGTTTGAAAATTATCTCAAGATTCCC
1 AGGATGTTTGAAAATTATCTCAAGATTCCC
*
27077358 AAG-T-TTTGAAAATT
1 AGGATGTTTGAAAATT
27077372 TTTCACGGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 10 0.26
29 1 0.03
30 28 0.72
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (30 bp):
AGGATGTTTGAAAATTATCTCAAGATTCCC
Found at i:27077741 original size:21 final size:21
Alignment explanation
Indices: 27077715--27077769 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
27077705 ATAGCGGTGA
*
27077715 CGGTGAGATTAGTTACTGTAG
1 CGGTGAGATTAGATACTGTAG
*
27077736 CGGTGAGATTGGATACTGTAG
1 CGGTGAGATTAGATACTGTAG
*
27077757 CAGTGAGATTAGA
1 CGGTGAGATTAGA
27077770 AACAATGGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.09, G:0.35, T:0.29
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAG
Found at i:27079881 original size:338 final size:334
Alignment explanation
Indices: 27079222--27079903 Score: 1172
Period size: 338 Copynumber: 2.0 Consensus size: 334
27079212 GTAGATATTT
*
27079222 AAGCATTTTTGAAAATAAAGAATGGATATATATGCATATATATATTTATATATAAAAGAATATTC
1 AAGCATTTTTGAAAATAAAGAATGGATATATACGCATATATATATTTATATATAAAAGAATATTC
27079287 ATTAAAAATATATATATGTATACATGTACATATAAAATATATATATAGATTAAAAATAAATAAAT
66 ATTAAAAATATATATATGTATACATGTACATAT--AATATATATATAGATTAAAAATAAATAAAT
27079352 AATATCTACATTATCAAAATTAAAAAATATATAAAAAAATAAATATGTGTATATATATAAATATG
129 AATATCTACATTATCAAAATTAAAAAATATATAAAAAAATAAATATGTGTATATATATAAATATG
27079417 AGAAAAATATTAGTTAAAGAAAATAAATAAATAAATATGTACCTAAAAAATATACATGTATATAT
194 AGAAAAATATTAGTTAAAGAAAATAAATAAATAAATATGTACCTAAAAAATATACATGTATATAT
*
27079482 ATAGATAAAAAAATTTACATATGAAAAAATAAAAAATAATTACATTGCTAAAATTAATTAATTTT
259 ATAGATAAAAAAAATTACATATGAAAAAATAAAAAATAATTACATTGCT-AAA-TAATTAATTTT
27079547 AAGAAAAATATAA
322 AAGAAAAATATAA
27079560 AAGCATTTTTGAAAATAAAGAAT-GAGTATATACGCATATATATATTTATATATAAAAGAATATT
1 AAGCATTTTTGAAAATAAAGAATGGA-TATATACGCATATATATATTTATATATAAAAGAATATT
*
27079624 CATTAAAAATATATATATGTATACATGTACATAT-A-ATATATATAGATTAAAAATAATTAAATA
65 CATTAAAAATATATATATGTATACATGTACATATAATATATATATAGATTAAAAATAAATAAATA
*
27079687 ATATCTACATTATCAAAATTAAAAAATATATATATAAAATAAATATGTGTATATATATAAATATG
130 ATATCTACATTATCAAAATTAAAAAATATATA-AAAAAATAAATATGTGTATATATATAAATATG
27079752 AGAAAAATATTAGTTAAAGAAAATAAATAAATAAATAAATATGTACCTAAAAAATATACATGTAT
194 AGAAAAATATTAGTTAAAG---A-AAATAAATAAATAAATATGTACCTAAAAAATATACATGTAT
27079817 ATATATAGATAAAAAAAATTACATATGAAAAAATAAAAAAAAATAATTACATTGCTAAAATTAAT
255 ATATATAGATAAAAAAAATTACATATGAAAAAAT---AAAAAATAATTACATTGCT-AAA-TAAT
27079882 TAATTTTAAGAAAAATATAA
315 TAATTTTAAGAAAAATATAA
27079902 AA
1 AA
27079904 AATGACTAAA
Statistics
Matches: 331, Mismatches: 4, Indels: 14
0.95 0.01 0.04
Matches are distributed among these distances:
334 59 0.18
335 51 0.15
337 2 0.01
338 95 0.29
339 74 0.22
342 50 0.15
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (334 bp):
AAGCATTTTTGAAAATAAAGAATGGATATATACGCATATATATATTTATATATAAAAGAATATTC
ATTAAAAATATATATATGTATACATGTACATATAATATATATATAGATTAAAAATAAATAAATAA
TATCTACATTATCAAAATTAAAAAATATATAAAAAAATAAATATGTGTATATATATAAATATGAG
AAAAATATTAGTTAAAGAAAATAAATAAATAAATATGTACCTAAAAAATATACATGTATATATAT
AGATAAAAAAAATTACATATGAAAAAATAAAAAATAATTACATTGCTAAATAATTAATTTTAAGA
AAAATATAA
Found at i:27085518 original size:22 final size:21
Alignment explanation
Indices: 27085478--27085518 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27085468 TTTTTTCTAT
*
27085478 TTTATTTTTTATATGTATAAA
1 TTTATTTTTTATATATATAAA
*
27085499 TTTATTTTTTTTCATATATA
1 TTTATTTTTTAT-ATATATA
27085519 TGTACTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTATTTTTTATATATATAAA
Found at i:27090274 original size:17 final size:17
Alignment explanation
Indices: 27090252--27090288 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
27090242 AGGCATGTTA
27090252 ATAACGAACCACTATTG
1 ATAACGAACCACTATTG
27090269 ATAACGAACCACTATTG
1 ATAACGAACCACTATTG
27090286 ATA
1 ATA
27090289 CATTGCTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (17 bp):
ATAACGAACCACTATTG
Found at i:27097648 original size:44 final size:45
Alignment explanation
Indices: 27097583--27098127 Score: 513
Period size: 44 Copynumber: 12.4 Consensus size: 45
27097573 TAAAAAACAG
* * * * *
27097583 CAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * * *
27097627 CAGATCCTATTTTCCTATATTGGTAGCCAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
27097671 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * *
27097715 GCAAATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 -CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
27097760 CAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
27097804 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * * *
27097849 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCCAAGATAG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
27097893 CAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
27097936 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA-AA
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * * *
27097980 GTAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA
1 -CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * * *
27098025 CAGATCCTGTCTTCCTATATTGGTAGCCAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
* * *
27098069 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGA-AG
1 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
*
27098112 CAGATCTTGCCTTCCT
1 CAGATCTTGTCTTCCT
27098128 GCACCGACAG
Statistics
Matches: 404, Mismatches: 84, Indels: 27
0.78 0.16 0.05
Matches are distributed among these distances:
43 51 0.13
44 247 0.61
45 106 0.26
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAA
Found at i:27097827 original size:133 final size:133
Alignment explanation
Indices: 27097581--27098125 Score: 916
Period size: 133 Copynumber: 4.1 Consensus size: 133
27097571 GCTAAAAAAC
* *
27097581 AGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATTTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATCTTCCTATA
27097646 TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
27097711 GAA
131 GAA
* *
27097714 AGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATCTTCCTATA
*
27097779 TTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
27097844 GAA
131 GAA
* * *
27097847 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGATAGCAGATCCTATCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATCTTCCTATA
*
27097912 TTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
66 TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
27097976 GAA
131 GAA
* *
27097979 AGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATCTTCCTATA
* * * * *
27098044 TTGGTAGCCAAGTGGATCGAAGATGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAA
66 TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
27098108 G-A
131 GAA
*
27098110 AGCAGATCTTGCCTTC
1 AGCAGATCTTGTCTTC
27098126 CTGCACCGAC
Statistics
Matches: 388, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 15 0.04
132 140 0.36
133 233 0.60
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (133 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATCTTCCTATA
TTGGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAA
GAA
Found at i:27098063 original size:265 final size:264
Alignment explanation
Indices: 27097583--27098125 Score: 926
Period size: 265 Copynumber: 2.1 Consensus size: 264
27097573 TAAAAAACAG
* * *
27097583 CAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTATTTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGATAACAGATCCTATCTTCCTATATT
27097648 GGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
27097713 AAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
131 AAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* * *
27097778 ATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
196 ATTGGTAGCCAAGTGGATCGAAGATGCAGATCCTGTCTTCCCATACTGGTAG-GAAGTAGATCGA
27097843 AGAAAA
260 AG-AAA
*
27097849 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGATAGCAGATCCTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGATAACAGATCCTATCTTCCTATATT
*
27097914 GGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
66 GGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
* *
27097978 AAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
131 AAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* * *
27098043 ATTGGTAGCCAAGTGGATCGAAGATGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAA
196 ATTGGTAGCCAAGTGGATCGAAGATGCAGATCCTGTCTTCCCATACTGGTAGGAAGTAGATCGAA
*
27098108 GAAG
261 GAAA
*
27098112 CAGATCTTGCCTTC
1 CAGATCTTGTCTTC
27098126 CTGCACCGAC
Statistics
Matches: 262, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
263 15 0.06
264 13 0.05
265 168 0.64
266 66 0.25
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (264 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGATAACAGATCCTATCTTCCTATATT
GGTAGCCAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
AAGCAAATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
ATTGGTAGCCAAGTGGATCGAAGATGCAGATCCTGTCTTCCCATACTGGTAGGAAGTAGATCGAA
GAAA
Found at i:27098213 original size:88 final size:88
Alignment explanation
Indices: 27098110--27098340 Score: 327
Period size: 88 Copynumber: 2.6 Consensus size: 88
27098100 GGATCGAAGA
* * *
27098110 AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAGCTTTGCCTCCCTGGG
1 AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAGCCTTACCTCCCTAGG
** *
27098175 TTGCAGTGGAGCAGGTTAAAAAT
66 TTGCAACGGAACAGGTTAAAAAT
* * * *
27098198 AGCAGATCCTGCCTTCCTGCATCGACAGTGAAACAGATCGAAGACACTAGCCTTACCTCCCTAGG
1 AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAGCCTTACCTCCCTAGG
27098263 TTGCAACGGAACAGGTTAAAAAT
66 TTGCAACGGAACAGGTTAAAAAT
*** * *
27098286 AGCAGATCTTGCCTTCCTGCACCGACAACAAAGCAGATCGAAGACATCAGTCTTA
1 AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAGCCTTA
27098341 TCACCTTGAT
Statistics
Matches: 124, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 124 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (88 bp):
AGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAAGACACCAGCCTTACCTCCCTAGG
TTGCAACGGAACAGGTTAAAAAT
Found at i:27098743 original size:44 final size:42
Alignment explanation
Indices: 27098647--27098804 Score: 140
Period size: 44 Copynumber: 3.7 Consensus size: 42
27098637 AAGATGACGA
* *
27098647 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCA-ATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-CCACA-G
* *
27098691 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAATCCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-CCACAG
* * * * * ** *
27098735 ATCTTATCTCTCTGAAGTTGCTGTAGAGTAGA-TCACGTCGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACCACAG
*
27098776 CTCTTATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGC
27098805 GGACTCAAGA
Statistics
Matches: 92, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
41 27 0.29
42 1 0.01
43 1 0.01
44 62 0.67
45 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (42 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAACCACAG
Found at i:27105222 original size:22 final size:22
Alignment explanation
Indices: 27105194--27105237 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27105184 TACCTTCATA
27105194 CTTTAAACCTTCAAACCAAACT
1 CTTTAAACCTTCAAACCAAACT
* * *
27105216 CTTTAAATCTTGATACCAAACT
1 CTTTAAACCTTCAAACCAAACT
27105238 TAAATTTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.02, T:0.32
Consensus pattern (22 bp):
CTTTAAACCTTCAAACCAAACT
Found at i:27107199 original size:16 final size:17
Alignment explanation
Indices: 27107178--27107210 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27107168 AATATTAGAG
27107178 GCAAAAACAT-AATTTT
1 GCAAAAACATAAATTTT
*
27107194 GCAAAAGCATAAATTTT
1 GCAAAAACATAAATTTT
27107211 AGACTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (17 bp):
GCAAAAACATAAATTTT
Found at i:27115327 original size:50 final size:50
Alignment explanation
Indices: 27115263--27115411 Score: 154
Period size: 50 Copynumber: 3.0 Consensus size: 50
27115253 TGTCATATCT
* ** * *
27115263 CAGATATGGTCTTACATGAGAGTTCTCATATAGGGGCCCATGCCATGTCC
1 CAGACATGGTCTTACATGAGACCTCTCATATAGGGGCCAACGCCATGTCC
* ** * * * *
27115313 TAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTCC
1 CAGACATGGTCTTACATGAGACCTCTCATATAGGGGCCAACGCCATGTCC
* * * *
27115363 CAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
1 CAGACATGGTCTTACATGAGACCTCTCATATAGGGGCCAACGCCATGTC
27115412 TCATTTCGGT
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
CAGACATGGTCTTACATGAGACCTCTCATATAGGGGCCAACGCCATGTCC
Found at i:27115420 original size:24 final size:24
Alignment explanation
Indices: 27115386--27115435 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
27115376 ACATGGGACC
27115386 TCTCATCTCGGTGCCAACGCCATG
1 TCTCATCTCGGTGCCAACGCCATG
*
27115410 TCTCATTTCGGTGCCAACGCCATG
1 TCTCATCTCGGTGCCAACGCCATG
27115434 TC
1 TC
27115436 CCAGACATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.36, G:0.20, T:0.28
Consensus pattern (24 bp):
TCTCATCTCGGTGCCAACGCCATG
Found at i:27125095 original size:25 final size:25
Alignment explanation
Indices: 27125065--27125120 Score: 82
Period size: 23 Copynumber: 2.3 Consensus size: 25
27125055 CCAGTTGAAT
27125065 AAAAGGAAAATTCG-ATGGATCTCTG
1 AAAAGGAAAATT-GAATGGATCTCTG
27125090 AAAAGG--AATTGAATGGATCTCTG
1 AAAAGGAAAATTGAATGGATCTCTG
27125113 AAAAGGAA
1 AAAAGGAA
27125121 TTGACGGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 1 0.04
23 21 0.75
25 6 0.21
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.21
Consensus pattern (25 bp):
AAAAGGAAAATTGAATGGATCTCTG
Found at i:27125105 original size:23 final size:23
Alignment explanation
Indices: 27125079--27125124 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
27125069 GGAAAATTCG
27125079 ATGGATCTCTGAAAAGGAATTGA
1 ATGGATCTCTGAAAAGGAATTGA
27125102 ATGGATCTCTGAAAAGGAATTGA
1 ATGGATCTCTGAAAAGGAATTGA
27125125 CGGTAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (23 bp):
ATGGATCTCTGAAAAGGAATTGA
Found at i:27126798 original size:6 final size:6
Alignment explanation
Indices: 27126782--27126811 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
27126772 TTAGAGAGTT
*
27126782 ACACGG GCACGG ACACGG ACACGG ACACGG
1 ACACGG ACACGG ACACGG ACACGG ACACGG
27126812 GTTGGGACGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.37, T:0.00
Consensus pattern (6 bp):
ACACGG
Found at i:27127400 original size:38 final size:39
Alignment explanation
Indices: 27127348--27127439 Score: 116
Period size: 38 Copynumber: 2.4 Consensus size: 39
27127338 AGTTTAAGTC
* * * *
27127348 TTTAACTATATCATAATTTGAACAT-TATTAATATGAG-T
1 TTTAATTATGTCATAATCTGAACATCT-TTAATAAGAGTT
*
27127386 TTTAATTATGTCATAATCTGAACATCTTTAATAAGGGTT
1 TTTAATTATGTCATAATCTGAACATCTTTAATAAGAGTT
27127425 TTTAATTATGTCATA
1 TTTAATTATGTCATA
27127440 GTTTAGGACA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 30 0.64
39 17 0.36
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.46
Consensus pattern (39 bp):
TTTAATTATGTCATAATCTGAACATCTTTAATAAGAGTT
Found at i:27129995 original size:15 final size:15
Alignment explanation
Indices: 27129975--27130017 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
27129965 GACAAAAAAA
27129975 TAAAAGAAAATATGT
1 TAAAAGAAAATATGT
27129990 TAAAAGAAAATATGT
1 TAAAAGAAAATATGT
27130005 TAAAAGAAAATAT
1 TAAAAGAAAATAT
27130018 TAAATAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.26
Consensus pattern (15 bp):
TAAAAGAAAATATGT
Found at i:27130445 original size:6 final size:6
Alignment explanation
Indices: 27130430--27130461 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
27130420 CTCGATATTC
*
27130430 CCCTTA CCCTTT CCCTTT CCCTTT CCCTTT CC
1 CCCTTT CCCTTT CCCTTT CCCTTT CCCTTT CC
27130462 AATCCTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.53, G:0.00, T:0.44
Consensus pattern (6 bp):
CCCTTT
Found at i:27131721 original size:5 final size:5
Alignment explanation
Indices: 27131711--27131745 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
27131701 ATATTTATAT
*
27131711 ATAAA ATAAA ATAAA ATAAA ATATAA ATAGA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATA-AA ATAAA ATAA
27131746 TTTATATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:27131744 original size:16 final size:15
Alignment explanation
Indices: 27131711--27131745 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
27131701 ATATTTATAT
27131711 ATAAAATAAAATAAA
1 ATAAAATAAAATAAA
*
27131726 ATAAAATATAAATAGA
1 ATAAAATA-AAATAAA
27131742 ATAA
1 ATAA
27131746 TTTATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
ATAAAATAAAATAAA
Found at i:27132767 original size:6 final size:6
Alignment explanation
Indices: 27132756--27132781 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
27132746 TTTGCATGTG
27132756 TGTGCT TGTGCT TGTGCT TGTGCT TG
1 TGTGCT TGTGCT TGTGCT TGTGCT TG
27132782 ACCAAGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.35, T:0.50
Consensus pattern (6 bp):
TGTGCT
Found at i:27147025 original size:976 final size:977
Alignment explanation
Indices: 27145100--27152932 Score: 15284
Period size: 977 Copynumber: 8.0 Consensus size: 977
27145090 AAGCCTCCCT
*
27145100 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAACGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27145165 ATAATATATCTTCCCTTTACTCAACCACATACGG-TTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27145229 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27145294 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATC-TTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
*
27145358 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACATAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27145423 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27145488 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27145553 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAA-TTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27145617 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27145682 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27145747 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27145812 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27145877 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27145942 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27146007 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27146072 CC
976 CC
27146074 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27146139 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27146204 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27146269 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
* *
27146334 TAAAAACTTTTCTTCATCTTTTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATGTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27146399 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27146464 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27146529 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27146594 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27146659 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27146724 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27146789 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27146854 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAA-TTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27146918 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27146983 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27147048 CC
976 CC
27147050 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27147115 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27147180 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27147245 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
27147310 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27147375 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
*
27147440 AATCTTTCTTAGTTAAGGATTTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27147505 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27147570 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27147635 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27147700 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27147765 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27147830 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27147895 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27147960 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27148025 CC
976 CC
27148027 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27148092 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27148157 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27148222 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
27148287 TAAAAACTTTTCTTCATCTTCT-AAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27148351 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27148416 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27148481 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27148546 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27148611 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27148676 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27148741 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27148806 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27148871 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27148936 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27149001 CC
976 CC
27149003 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27149068 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27149133 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27149198 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
* *
27149263 TAAAAACTTTTCTTCATCTTTTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATGTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27149328 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27149393 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27149458 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27149523 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27149588 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27149653 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27149718 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27149783 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27149848 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27149913 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27149978 CC
976 CC
27149980 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27150045 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27150110 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27150175 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
27150240 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27150305 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27150370 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27150435 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27150500 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27150565 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27150630 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
27150695 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
27150760 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27150825 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27150890 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27150955 CC
976 CC
27150957 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27151022 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27151087 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27151152 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
*
27151217 TAAAAACTTTTCTTCATCTTTTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27151282 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27151347 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27151412 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27151477 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
27151542 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
*
27151607 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTAGAAACACAAAGTCTTCAAGAAAATCTA
651 CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
*
27151672 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATGGC
716 GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
* *
27151737 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGCAGGAATTTTTTAGAA
781 ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
27151802 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
846 ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
27151867 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
911 AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
27151932 CC
976 CC
27151934 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
1 TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
27151999 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
66 ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
27152064 CTCAAATCTT-TATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAAT-AAAAAGTTGAA
131 CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
27152127 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
196 ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
*
27152192 TAAAAACTTTTCTTCATCTACTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
261 TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
27152257 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
326 ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
27152322 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
391 AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
27152387 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
456 GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
27152452 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
521 ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
* *
27152517 GGAGAAACTCAAAATCCCAAAGTAACTTCATATTACATTTAAGGAACCCTAAGGTAAACCTTAGG
586 GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
27152582 CTAATTGTCTTGTTTTAATATATTGGGCAAGTAGTGTGTTTATGGCTATATGTAATCTTGGAAAC
651 CTAATTGTCTTG-TTT--TA-A-T-----A-TA-T-TG-----GG----ATGTAATCTTGGAAAC
27152647 ACAAAGTCTTCAAGAAAATCTAGAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGT
694 ACAAAGTCTTCAAGAAAATCTAGAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGT
27152712 CTTAGAAGGATAAAAATATAGCATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTT
759 CTTAGAAGGATAAAAATATAGCATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTT
27152777 AATTAGGAGGAATTTTTGAGAAATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATT
824 AATTAGGAGGAATTTTTGAGAAATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATT
27152842 CTTCTAATTTGTTTATAGATTGAAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATT
889 CTTCTAATTTGTTTATAGATTGAAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATT
27152907 GGGTGATTATTTGTGCAGTTTACC
954 GGGTGATTATTTGTGCAGTTTACC
27152931 TT
1 TT
27152933 AAAATAAATT
Statistics
Matches: 6807, Mismatches: 25, Indels: 31
0.99 0.00 0.00
Matches are distributed among these distances:
974 98 0.01
975 628 0.09
976 2227 0.33
977 3544 0.52
978 2 0.00
979 1 0.00
980 1 0.00
985 1 0.00
986 2 0.00
987 1 0.00
988 2 0.00
993 2 0.00
997 298 0.04
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (977 bp):
TTTATATACCTTGGAAGGATAATGTGGACTCTCTCTTCTTCTTCAATGCTTGATGAGAGATCCAA
ATAATATATCTTCCCTTTACTCAACCACATACGGTTTTTCAGGTGAATCATTCTCAATTTCTAAA
CTCAAATCTTGTATCAACAAAGTTTAAAATAAATAGAGAAAGAAAATTAAAATAAAAAAGTTGAA
ATATGTTTCAACGATTAAAAATTAACTAATATAATATATGAGAAGTACCATTTCTCATCTTTTAA
TAAAAACTTTTCTTCATCTTCTAAAAAGAACAACACAATTTTAGCTTTAGTGACAATCTTTCTTC
ATTTCTAATAACCTCCCTTCTTATCTTGCTCTTCATGTTATCAGAACTTATTCTAAGAATCATGC
AATCTTTCTTAGTTAAGGATGTTGGGGGTGCATTTTCCATATATGCTCCAAAGGCAAACAACATA
GAGATAAGAATTCTAATCTCAAGATAAATGATGCATAATTTTTTACATTCTTCATCTTAAATATC
ATATTCAAATTCCTACAATTTTAAATTACCAGTTAAGCATATGATATCCTTGACATTAATCACTT
GGAGAAACTCAAAATCCAAAAGTAACTTCATATTACAATTAAGGAACCCTAAGGTAAACCTTAGG
CTAATTGTCTTGTTTTAATATATTGGGATGTAATCTTGGAAACACAAAGTCTTCAAGAAAATCTA
GAGAGATTCCAATCTGATCAAAGAATTTGAAACCAGTGATTGTCTTAGAAGGATAAAAATATAGC
ATAAATAGGTATAGTTCCTCTAGTTGATTTAACTTTTGGATTTAATTAGGAGGAATTTTTGAGAA
ATAAAACATTTATGTAGATTCAATAATTTTAAATTCTCCAATTCTTCTAATTTGTTTATAGATTG
AAAGATTACAACCACACAACCTAAAATGAAAATTTTTATAATTGGGTGATTATTTGTGCAGTTTA
CC
Done.