Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 9 of 185
Found at i:2520171 original size:11 final size:11
Alignment explanation
Indices: 2520155--2520185 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
2520145 TCCATCAATC
2520155 GAGAGCATAAT
1 GAGAGCATAAT
2520166 GAGAGCATAAT
1 GAGAGCATAAT
2520177 GAGAGCATA
1 GAGAGCATA
2520186 CCTCTGATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.29, T:0.16
Consensus pattern (11 bp):
GAGAGCATAAT
Found at i:2522559 original size:57 final size:57
Alignment explanation
Indices: 2522471--2522690 Score: 262
Period size: 57 Copynumber: 3.8 Consensus size: 57
2522461 CTAAATCATA
* *
2522471 TAAACCTTCAACACCTTCACTACCTTGACTGCCACCAACCTCAACACCCTTCCCACC
1 TAAACCTTCAACACCCTCACCACCTTGACTGCCACCAACCTCAACACCCTTCCCACC
* * *
2522528 TAAACCTTCACCACTCTCACCACCTTGACTGCCACCAACCTCAGCACCCTTCCCACC
1 TAAACCTTCAACACCCTCACCACCTTGACTGCCACCAACCTCAACACCCTTCCCACC
* * * * * **
2522585 TAAATCTTCAACACCCTCACCACCTTCACTACCAGCAACCTGAAACACCC-TCCCTATT
1 TAAACCTTCAACACCCTCACCACCTTGACTGCCACCAACCT-CAACACCCTTCCC-ACC
* * * **
2522643 TAAACCTTTAACACCCTCACCACCTTTACTGCTAATAACCTCAACACC
1 TAAACCTTCAACACCCTCACCACCTTGACTGCCACCAACCTCAACACC
2522691 TTCTTTACCA
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
57 97 0.70
58 41 0.30
ACGTcount: A:0.29, C:0.45, G:0.04, T:0.22
Consensus pattern (57 bp):
TAAACCTTCAACACCCTCACCACCTTGACTGCCACCAACCTCAACACCCTTCCCACC
Found at i:2523596 original size:29 final size:29
Alignment explanation
Indices: 2523542--2523698 Score: 120
Period size: 29 Copynumber: 5.4 Consensus size: 29
2523532 AATTAGTAGT
** * *
2523542 AAAACCCTAAACCAATGTCTCAAAAATCG
1 AAAACCCTAAACCAAAATCCCCAAAATCG
** * *
2523571 AAAACAATAAACAAAAATCCCCAAAATTAG
1 AAAACCCTAAACCAAAATCCCCAAAA-TCG
* * *
2523601 AATACCCCAAACGAAAATCCCCAAAATC-
1 AAAACCCTAAACCAAAATCCCCAAAATCG
* *
2523629 AAAACCCCTAACCCAAAATCCCCAAATTCG
1 AAAA-CCCTAAACCAAAATCCCCAAAATCG
* * * *
2523659 ACAA-CCTAAACCAAAATCTCCAAACTCA
1 AAAACCCTAAACCAAAATCCCCAAAATCG
*
2523687 AAAACCTTAAAC
1 AAAACCCTAAAC
2523699 ATTAACCAAA
Statistics
Matches: 98, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
28 26 0.27
29 46 0.47
30 26 0.27
ACGTcount: A:0.52, C:0.31, G:0.03, T:0.14
Consensus pattern (29 bp):
AAAACCCTAAACCAAAATCCCCAAAATCG
Found at i:2523618 original size:30 final size:29
Alignment explanation
Indices: 2523578--2523699 Score: 97
Period size: 28 Copynumber: 4.2 Consensus size: 29
2523568 TCGAAAACAA
*
2523578 TAAACAAAAATCCCCAAAATTAGAATACCCC
1 TAAACAAAAATCCCCAAAATCA-AA-ACCCC
*
2523609 -AAACGAAAATCCCCAAAATCAAAACCCC
1 TAAACAAAAATCCCCAAAATCAAAACCCC
* * * *
2523637 TAACCCAAAATCCCCAAATTCGACAA--CC
1 TAAACAAAAATCCCCAAAATC-AAAACCCC
* * * * *
2523665 TAAACCAAAATCTCCAAACTCAAAAACCT
1 TAAACAAAAATCCCCAAAATCAAAACCCC
2523694 TAAACA
1 TAAACA
2523700 TTAACCAAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
27 3 0.04
28 25 0.33
29 25 0.33
30 22 0.29
ACGTcount: A:0.51, C:0.33, G:0.02, T:0.14
Consensus pattern (29 bp):
TAAACAAAAATCCCCAAAATCAAAACCCC
Found at i:2523651 original size:15 final size:15
Alignment explanation
Indices: 2523579--2523654 Score: 57
Period size: 15 Copynumber: 5.1 Consensus size: 15
2523569 CGAAAACAAT
*
2523579 AAACAAAAATCCCCA
1 AAACCAAAATCCCCA
** *
2523594 AAATTAGAATACCCC-
1 AAACCAAAAT-CCCCA
*
2523609 AAACGAAAATCCCCA
1 AAACCAAAATCCCCA
* *
2523624 AAATCAAAA-CCCCT
1 AAACCAAAATCCCCA
*
2523638 AACCCAAAATCCCCA
1 AAACCAAAATCCCCA
2523653 AA
1 AA
2523655 TTCGACAACC
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
14 15 0.33
15 27 0.59
16 4 0.09
ACGTcount: A:0.53, C:0.34, G:0.03, T:0.11
Consensus pattern (15 bp):
AAACCAAAATCCCCA
Found at i:2525940 original size:14 final size:15
Alignment explanation
Indices: 2525921--2525949 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
2525911 AAATATTTTA
2525921 TATTAATA-AATGAT
1 TATTAATAGAATGAT
2525935 TATTAATAGAATGAT
1 TATTAATAGAATGAT
2525950 AAAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (15 bp):
TATTAATAGAATGAT
Found at i:2526269 original size:29 final size:29
Alignment explanation
Indices: 2526227--2526284 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
2526217 TTCTTAGATA
*
2526227 CATTTCTTATATTAGCTTAAAACCCAATC
1 CATTTATTATATTAGCTTAAAACCCAATC
2526256 CATTTATTATATTAGCTTAAAACCCAATC
1 CATTTATTATATTAGCTTAAAACCCAATC
2526285 TTTTTTTCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.22, G:0.03, T:0.38
Consensus pattern (29 bp):
CATTTATTATATTAGCTTAAAACCCAATC
Found at i:2535133 original size:127 final size:128
Alignment explanation
Indices: 2534906--2535160 Score: 440
Period size: 127 Copynumber: 2.0 Consensus size: 128
2534896 ATGGTAACTT
*
2534906 GAATTTAACTTAATAATTTGGAATTCTAACACATGGGTAAGACATGCTAGTTTGAGATGATTATG
1 GAATTTAACTTAATAATTTGGAATTCTAACACATGGGTAAGACATGCTAGTTTGAGAGGATTATG
*
2534971 AATTAAAAAAAATCCAAGGAAAATACACATATTTACCTTATCAATTTGTTGGCCGAATGTGAA
66 AATTAAAAAAAATCCAAGGAAAATACACATATTTACCTTATCAAATTGTTGGCCGAATGTGAA
2535034 GAATTTAACTTAATAATTTGGAATTCTAACACAT-GGTAAGACATGCTAGTTTGAGAGGATTATG
1 GAATTTAACTTAATAATTTGGAATTCTAACACATGGGTAAGACATGCTAGTTTGAGAGGATTATG
* * * * *
2535098 AATTCACAAAACTCCAAGGAAGATACACATATTTACTTTATCAAATTGTTGGCCGAATGTGAA
66 AATTAAAAAAAATCCAAGGAAAATACACATATTTACCTTATCAAATTGTTGGCCGAATGTGAA
2535161 TAAGAAAGCT
Statistics
Matches: 120, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
127 86 0.72
128 34 0.28
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.32
Consensus pattern (128 bp):
GAATTTAACTTAATAATTTGGAATTCTAACACATGGGTAAGACATGCTAGTTTGAGAGGATTATG
AATTAAAAAAAATCCAAGGAAAATACACATATTTACCTTATCAAATTGTTGGCCGAATGTGAA
Found at i:2536916 original size:68 final size:67
Alignment explanation
Indices: 2536614--2536934 Score: 208
Period size: 68 Copynumber: 4.7 Consensus size: 67
2536604 TGGAGGCAAG
* * * * *** *
2536614 GTACTTTAAAAAGTATGGAAACT-AAGAAGGTTGAAAGTTTTGAAAAGCTAAAACCCTAATAAGG
1 GTACTTTAAGAAGTAT-GTAACTGAAGAAGGTTGAAAGCTTTGAAAAGCT-TAGTGCTAAGAAGG
*
2536678 CGAAA
64 -TAAA
** * *
2536683 -TACTTTAAGAAGT-TCACAACTTG-ATAAGGTTGAGAA-CTTTGAAAAG-TTAAGTGTCTGAGA
1 GTACTTTAAGAAGTAT-GTAAC-TGAAGAAGGTTGA-AAGCTTTGAAAAGCTT-AGTG-CTAAGA
2536743 AGGTAAA
61 AGGTAAA
* * * * * * *
2536750 GTACTTCAAGAAATATGCAACTCAAGAAGGTTGAAAGCTTTGAAAAGATAAGTGCTTAAGAAGAT
1 GTACTTTAAGAAGTATGTAACTGAAGAAGGTTGAAAGCTTTGAAAAGCTTAGTGC-TAAGAAGGT
*
2536815 AAT
65 AAA
** *
2536818 GTACTTTAAGAAGTACCTAAGC-AAAGAAGGTTGAAAGCTTTGAAAAGCTTAGTGCATAAGAAGG
1 GTACTTTAAGAAGTATGTAA-CTGAAGAAGGTTGAAAGCTTTGAAAAGCTTAGTGC-TAAGAAGG
*
2536882 CAAA
64 TAAA
* * * **
2536886 GTACTTTAATAAGTATGTGACTTGAA-AAGGTGGAAAATTTTGAAAAGCT
1 GTACTTTAAGAAGTATGTAAC-TGAAGAAGGTTGAAAGCTTTGAAAAGCT
2536935 AATTTCCTAA
Statistics
Matches: 196, Mismatches: 42, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
67 14 0.07
68 175 0.89
69 7 0.04
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (67 bp):
GTACTTTAAGAAGTATGTAACTGAAGAAGGTTGAAAGCTTTGAAAAGCTTAGTGCTAAGAAGGTA
AA
Found at i:2538970 original size:21 final size:21
Alignment explanation
Indices: 2538949--2539066 Score: 128
Period size: 21 Copynumber: 5.6 Consensus size: 21
2538939 TTGGCTGAAT
*
2538949 CCGAGGCGAAGCCAGCCGAAT
1 CCGAGGCGAAGCCAGCCGAAA
* *
2538970 CCGAGGTGCAGCCAGCCGAAA
1 CCGAGGCGAAGCCAGCCGAAA
*
2538991 CCGAGGCGAATCCAGCCGAAA
1 CCGAGGCGAAGCCAGCCGAAA
* *
2539012 CCAAGGTGAAGCCAGCCGAAA
1 CCGAGGCGAAGCCAGCCGAAA
* * * * *
2539033 CTGAGGCGAAACCAACAGAAC
1 CCGAGGCGAAGCCAGCCGAAA
*
2539054 CCGAGGCAAAGCC
1 CCGAGGCGAAGCC
2539067 CACGGAAGCT
Statistics
Matches: 78, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 78 1.00
ACGTcount: A:0.34, C:0.32, G:0.30, T:0.04
Consensus pattern (21 bp):
CCGAGGCGAAGCCAGCCGAAA
Found at i:2539008 original size:42 final size:42
Alignment explanation
Indices: 2538949--2539042 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
2538939 TTGGCTGAAT
* * *
2538949 CCGAGGCGAAGCCAGCCGAATCCGAGGTGCAGCCAGCCGAAA
1 CCGAGGCGAAGCCAGCCGAAACCAAGGTGAAGCCAGCCGAAA
*
2538991 CCGAGGCGAATCCAGCCGAAACCAAGGTGAAGCCAGCCGAAA
1 CCGAGGCGAAGCCAGCCGAAACCAAGGTGAAGCCAGCCGAAA
*
2539033 CTGAGGCGAA
1 CCGAGGCGAA
2539043 ACCAACAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.31, G:0.32, T:0.05
Consensus pattern (42 bp):
CCGAGGCGAAGCCAGCCGAAACCAAGGTGAAGCCAGCCGAAA
Found at i:2544346 original size:26 final size:27
Alignment explanation
Indices: 2544311--2544378 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
2544301 ATTTTTACTT
* *
2544311 CCCCTCAAAAGTTTTATTTC-TCCCAAA
1 CCCC-CAAAACTTTTACTTCTTCCCAAA
* *
2544338 TCCCCAAAACTTTTACTTCTTCCTAAA
1 CCCCCAAAACTTTTACTTCTTCCCAAA
2544365 CCCCCAAAACTTTT
1 CCCCCAAAACTTTT
2544379 CTTTTTCGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 13 0.37
27 22 0.63
ACGTcount: A:0.29, C:0.35, G:0.01, T:0.34
Consensus pattern (27 bp):
CCCCCAAAACTTTTACTTCTTCCCAAA
Found at i:2550751 original size:18 final size:18
Alignment explanation
Indices: 2550725--2550772 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
2550715 TTTGGTCATA
*
2550725 TGTTGGTATGTATGTTTC
1 TGTTTGTATGTATGTTTC
2550743 TGTTTGTATGTATGTTTC
1 TGTTTGTATGTATGTTTC
2550761 TGTTTGTATGTA
1 TGTTTGTATGTA
2550773 CCATACACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.12, C:0.04, G:0.25, T:0.58
Consensus pattern (18 bp):
TGTTTGTATGTATGTTTC
Found at i:2559215 original size:22 final size:22
Alignment explanation
Indices: 2559189--2559233 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2559179 TTTTAATAAA
2559189 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
2559211 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
2559233 A
1 A
2559234 CGCTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:2562990 original size:22 final size:22
Alignment explanation
Indices: 2562964--2563008 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2562954 TTTTAATAAA
2562964 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
2562986 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
2563008 A
1 A
2563009 CAGAATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:2563012 original size:13 final size:13
Alignment explanation
Indices: 2562971--2563014 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 13
2562961 AAAAAAATAT
*
2562971 CTACAAAATATTC
1 CTACAGAATATTC
2562984 CTA-A-AATATT-
1 CTACAGAATATTC
2562994 -TACAGAATATTC
1 CTACAGAATATTC
2563006 CTACAGAAT
1 CTACAGAAT
2563015 GTAAGTTCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
9 2 0.07
10 1 0.04
11 12 0.44
12 1 0.04
13 11 0.41
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (13 bp):
CTACAGAATATTC
Found at i:2572088 original size:205 final size:205
Alignment explanation
Indices: 2571736--2572152 Score: 771
Period size: 205 Copynumber: 2.0 Consensus size: 205
2571726 CGTGTTTTTT
*
2571736 TTTAAAACAAAGTCGGTGCACCATATAGGGCTTTAGATGGTCTAGTGAACCCAGCATCTAAGAGC
1 TTTAAAACAAAGTCGGTGCACCATATAGGGCTTTAGATGGTCTAGTGAACCCAACATCTAAGAGC
*
2571801 TCCTTCAATTGTTTCACAATTCTTCAATTTTGGTGGTGACATTCAACATGGGGAATTGACTGGCA
66 TCCTTCAATTGTTTCACAACTCTTCAATTTTGGTGGTGACATTCAACATGGGGAATTGACTGGCA
* *
2571866 ATTCAACATTGGGCATTTGTGATCCACCACCCTCTTAGAAGGTAACTTCTTAGGCAGCTCGGCAA
131 ATTCAACATTGGGCATTTGTGATCCACCACCCTCTTAGAAGGTAACTTCTAAGGCAGCTCAGCAA
2571931 GCATCACATC
196 GCATCACATC
2571941 TTTAAAACAAAGTCGGTGCACCATATAGGGCTTTAGATGGTCTAGTGAACCCAACATCTAAGAGC
1 TTTAAAACAAAGTCGGTGCACCATATAGGGCTTTAGATGGTCTAGTGAACCCAACATCTAAGAGC
2572006 TCCTTCAATTGTTTCACAACTCTTCAATTTTGGTGGTGACATTCAACATGGGGAATTGACTGGCA
66 TCCTTCAATTGTTTCACAACTCTTCAATTTTGGTGGTGACATTCAACATGGGGAATTGACTGGCA
* *
2572071 ATTCAACATTGGGCATTTGTGATCCTCCACCCTCTTAGAAGGTAACTTCTAAGGCAGCTTAGCAA
131 ATTCAACATTGGGCATTTGTGATCCACCACCCTCTTAGAAGGTAACTTCTAAGGCAGCTCAGCAA
2572136 GCATCACATC
196 GCATCACATC
*
2572146 TTGAAAA
1 TTTAAAA
2572153 GACTATAACA
Statistics
Matches: 205, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
205 205 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (205 bp):
TTTAAAACAAAGTCGGTGCACCATATAGGGCTTTAGATGGTCTAGTGAACCCAACATCTAAGAGC
TCCTTCAATTGTTTCACAACTCTTCAATTTTGGTGGTGACATTCAACATGGGGAATTGACTGGCA
ATTCAACATTGGGCATTTGTGATCCACCACCCTCTTAGAAGGTAACTTCTAAGGCAGCTCAGCAA
GCATCACATC
Found at i:2573526 original size:12 final size:12
Alignment explanation
Indices: 2573509--2573538 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2573499 CCTCACACGC
*
2573509 CCGTGTGTTAGG
1 CCGTGTGCTAGG
2573521 CCGTGTGCTAGG
1 CCGTGTGCTAGG
2573533 CCGTGT
1 CCGTGT
2573539 AACTGTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:2574432 original size:36 final size:36
Alignment explanation
Indices: 2574392--2574580 Score: 288
Period size: 36 Copynumber: 5.2 Consensus size: 36
2574382 CAAATCAAGA
* * *
2574392 AAAACACACTAGATGCTCACACAAGTCAATCCCTCC
1 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
2574428 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
1 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
*
2574464 AAAACACACCAGATGCTCACACGAGCCAATCTCTCC
1 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
* * *
2574500 AAAACACACCAAATGCTCACATGTGCCAATCCCTCC
1 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
* * *
2574536 AAAACACATCAGATGTTCACACGAGTCAATCCCTCC
1 AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
2574572 AAAACACAC
1 AAAACACAC
2574581 TAAACAGAGA
Statistics
Matches: 138, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 138 1.00
ACGTcount: A:0.38, C:0.38, G:0.10, T:0.15
Consensus pattern (36 bp):
AAAACACACCAGATGCTCACACGAGCCAATCCCTCC
Found at i:2578378 original size:64 final size:64
Alignment explanation
Indices: 2578241--2578378 Score: 179
Period size: 65 Copynumber: 2.1 Consensus size: 64
2578231 ATAATACTTA
* * *
2578241 AATAACGAAATTAAAATAAAATCATCACATATTTTATATTAGCCAAAGAAAGTAGTTAACAATAC
1 AATAACAAAACTAAAATAAAATCATCACATATTTTATACTAGCC-AAGAAAGTAGTTAACAATAC
* ** *
2578306 AATAACAAAACTAAAATCAAATCATCATGTGTTTTATACTAGTCC-AGAAAGTAGTTAACAATAC
1 AATAACAAAACTAAAATAAAATCATCACATATTTTATACTAG-CCAAGAAAGTAGTTAACAATAC
*
2578370 AATTACAAA
1 AATAACAAA
2578379 TAAAAATAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
64 27 0.42
65 35 0.55
66 2 0.03
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.28
Consensus pattern (64 bp):
AATAACAAAACTAAAATAAAATCATCACATATTTTATACTAGCCAAGAAAGTAGTTAACAATAC
Found at i:2589182 original size:103 final size:104
Alignment explanation
Indices: 2588997--2589203 Score: 380
Period size: 103 Copynumber: 2.0 Consensus size: 104
2588987 TAAAGTACAA
*
2588997 TGACTAAATCACAACTTTCATAAGTAATGGGACTATTGGTAGAATTTAACATTTTCTTTCCACTT
1 TGACTAAATCACAACTTTCATAAGTAATAGGACTATTGGTAGAATTTAACATTTTCTTTCCACTT
2589062 TTCTATTCAACCAAGCACACCCTGAAGACCATGTAGGTG
66 TTCTATTCAACCAAGCACACCCTGAAGACCATGTAGGTG
*
2589101 TGACTAAATCACAACTTTCATAAGTAATAGGACTA-TGGTAGAATTTAACATTTTCTTTCGACTT
1 TGACTAAATCACAACTTTCATAAGTAATAGGACTATTGGTAGAATTTAACATTTTCTTTCCACTT
*
2589165 TTCTATTCAACCGAGCACACCCTGAAGACCATGTAGGTG
66 TTCTATTCAACCAAGCACACCCTGAAGACCATGTAGGTG
2589204 CCACTTTTCA
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
103 66 0.66
104 34 0.34
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (104 bp):
TGACTAAATCACAACTTTCATAAGTAATAGGACTATTGGTAGAATTTAACATTTTCTTTCCACTT
TTCTATTCAACCAAGCACACCCTGAAGACCATGTAGGTG
Found at i:2594069 original size:31 final size:31
Alignment explanation
Indices: 2594031--2594092 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
2594021 GGAATGATGT
2594031 GTAAGACCATAACTCAACTATGACAACATTG
1 GTAAGACCATAACTCAACTATGACAACATTG
2594062 GTAAGACCATAACTCAACTATGACAACATTG
1 GTAAGACCATAACTCAACTATGACAACATTG
2594093 AGAGTTCACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (31 bp):
GTAAGACCATAACTCAACTATGACAACATTG
Found at i:2594190 original size:67 final size:66
Alignment explanation
Indices: 2594062--2594430 Score: 380
Period size: 67 Copynumber: 5.5 Consensus size: 66
2594052 GACAACATTG
* ** * * * * * * *
2594062 GTAAGACCATAACTCAACTATGACAACATTGAGAGTTCACCATGATATTAAACATCGGGTATAAT
1 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCA-GACATTAAACATGGGGTATGAT
2594127 GT
65 GT
* * * *
2594129 GTAAGAACC-TAGCTCGGCTATGGCAACGTAGTGAGTCTGCCAGTACATTAAAAATGGGGTATGA
1 GTAAG-ACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCAG-ACATTAAACATGGGGTATGA
*
2594193 TAT
64 TGT
* * * ** *
2594196 GTAAGACCATAGCTCGACTATGGCAACAAAGAAAGTATGCTAGATCATTAAACATGGGGTATGAT
1 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCAGA-CATTAAACATGGGGTATGAT
2594261 GT
65 GT
* * * * *
2594263 GTAAGACCTTAGCTCAGCTATGACAACATAGAGAGTCCGCCAGAACATTAAACGTGGGGTTTGAT
1 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCAG-ACATTAAACATGGGGTATGAT
2594328 GT
65 GT
* * *
2594330 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAACATGAGGTATAAT
1 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCA-GACATTAAACATGGGGTATGAT
2594395 GT
65 GT
* * * *
2594397 GTAAGGCCCTAGCTCGACTATGACAACATAGAGA
1 GTAAGACCATAGCTCGGCTATGGCAACATAGAGA
2594431 TTCTATTGGG
Statistics
Matches: 249, Mismatches: 47, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
66 5 0.02
67 239 0.96
68 5 0.02
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (66 bp):
GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCGCCAGACATTAAACATGGGGTATGATG
T
Found at i:2594412 original size:201 final size:201
Alignment explanation
Indices: 2594062--2594424 Score: 487
Period size: 201 Copynumber: 1.8 Consensus size: 201
2594052 GACAACATTG
* * *
2594062 GTAAGACCATAACTCAACTATGACAACATTGAGAGTTCACCATGATATTAAACATCGGGTATAAT
1 GTAAGACCATAACTCAACTATGACAACATAGAGAGTCCACCATGACATTAAACATCGGGTATAAT
* * ** * * *
2594127 GTGTAAGAACCTAGCTCGGCTATGGCAACGTAGTGAGTCTGCCAGTACATTAAAAATGGGGTATG
66 GTGTAAGAACCTAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAAAATGAGGTATA
*
2594192 ATATGTAAGACCATAGCTCGACTATGGCAACAAAGAAAGTATGCTAGATCATTAAACATGGGGTA
131 ATATGTAAGACCATAGCTCGACTATGACAACAAAGAAAGTATGCTAGATCATTAAACATGGGGTA
2594257 TGATGT
196 TGATGT
* * * * * * * *
2594263 GTAAGACCTTAGCTCAGCTATGACAACATAGAGAGTCCGCCA-GAACATTAAACGTGGGGTTTGA
1 GTAAGACCATAACTCAACTATGACAACATAGAGAGTCCACCATG-ACATTAAACATCGGGTATAA
*
2594327 TGTGTAAG-ACCATAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAACATGAGGTA
65 TGTGTAAGAACC-TAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAAAATGAGGTA
* * *
2594391 TAATGTGTAAGGCCCTAGCTCGACTATGACAACA
129 TAATATGTAAGACCATAGCTCGACTATGACAACA
2594425 TAGAGATTCT
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
200 4 0.03
201 133 0.97
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (201 bp):
GTAAGACCATAACTCAACTATGACAACATAGAGAGTCCACCATGACATTAAACATCGGGTATAAT
GTGTAAGAACCTAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAAAATGAGGTATA
ATATGTAAGACCATAGCTCGACTATGACAACAAAGAAAGTATGCTAGATCATTAAACATGGGGTA
TGATGT
Found at i:2594456 original size:134 final size:132
Alignment explanation
Indices: 2594062--2594430 Score: 425
Period size: 134 Copynumber: 2.8 Consensus size: 132
2594052 GACAACATTG
* * * * * *
2594062 GTAAGACCATAACTCAACTATGACAACATTGAGAGTTCACCATGATATTAAACATCGGGTATAAT
1 GTAAGACCATAGCTCGACTATGGCAACATAGAGAGTACACCA-GACATTAAACAT-GGGTATAAT
* * * * * *
2594127 GTGTAAGAACCTAGCTCGGCTATGGCAACGTAGTGAGTCTGCCAGTACATTAAAAATGGGGTATG
64 GTGTAAGACCCTAGCTCGACTATGACAACATAGAGAGTCTGCCAGAACATTAAAAATGGGGTATG
2594192 ATAT
129 ATAT
* * ** * *
2594196 GTAAGACCATAGCTCGACTATGGCAACAAAGAAAGTATGCTAGATCATTAAACATGGGGTATGAT
1 GTAAGACCATAGCTCGACTATGGCAACATAGAGAGTACACCAGA-CATTAAACAT-GGGTATAAT
* * ** *
2594261 GTGTAAGACCTTAGCTC-AGCTATGACAACATAGAGAGTCCGCCAGAACATTAAACGTGGGGTTT
64 GTGTAAGACCCTAGCTCGA-CTATGACAACATAGAGAGTCTGCCAGAACATTAAAAATGGGGTAT
*
2594325 GATGT
128 GATAT
* *
2594330 GTAAGACCATAGCTCGGCTATGGCAACATAGAGAGTCCACCAGGACATTAAACATGAGGTATAAT
1 GTAAGACCATAGCTCGACTATGGCAACATAGAGAGTACACCA-GACATTAAACATG-GGTATAAT
*
2594395 GTGTAAGGCCCTAGCTCGACTATGACAACATAGAGA
64 GTGTAAGACCCTAGCTCGACTATGACAACATAGAGA
2594431 TTCTATTGGG
Statistics
Matches: 195, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
133 3 0.02
134 189 0.97
135 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (132 bp):
GTAAGACCATAGCTCGACTATGGCAACATAGAGAGTACACCAGACATTAAACATGGGTATAATGT
GTAAGACCCTAGCTCGACTATGACAACATAGAGAGTCTGCCAGAACATTAAAAATGGGGTATGAT
AT
Found at i:2615385 original size:14 final size:14
Alignment explanation
Indices: 2615334--2615378 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
2615324 TTTATTTTTA
2615334 TTATAATATTTTATT
1 TTATAATA-TTTATT
*
2615349 ATATCAAT-TTTATT
1 TTAT-AATATTTATT
2615363 TTATAATATTTATT
1 TTATAATATTTATT
2615377 TT
1 TT
2615379 TAGATATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.12
14 17 0.65
15 3 0.12
16 3 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (14 bp):
TTATAATATTTATT
Found at i:2619933 original size:38 final size:39
Alignment explanation
Indices: 2619881--2619954 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 39
2619871 AATAAAATTC
2619881 TCTCTTAATTAGTTTGTTGATTAAGTTTAGATGAAGTCA
1 TCTCTTAATTAGTTTGTTGATTAAGTTTAGATGAAGTCA
* *
2619920 TCTC-TAATTAGTTTGTTGTTTATGTTTAGATGAAG
1 TCTCTTAATTAGTTTGTTGATTAAGTTTAGATGAAG
2619955 CTAAAACCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
38 29 0.88
39 4 0.12
ACGTcount: A:0.26, C:0.07, G:0.19, T:0.49
Consensus pattern (39 bp):
TCTCTTAATTAGTTTGTTGATTAAGTTTAGATGAAGTCA
Found at i:2629931 original size:43 final size:43
Alignment explanation
Indices: 2629855--2630010 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
2629845 CAATGTCATA
* * * *
2629855 TCCCAGATATGGTCTTACATGAAATCTCGTATCGATGCCAATAG
1 TCCCAGACAAGGTCTTACACGAAATCTCATATCGATGCCAAT-G
*
2629899 -CCCA-ACCAAGGTCTTACACGAAATCACATATCGATGCCAATG
1 TCCCAGA-CAAGGTCTTACACGAAATCTCATATCGATGCCAATG
* * * *
2629941 TCCCAGACATGGTCTTACACGAATTCTCATATCGATGTC-ATA
1 TCCCAGACAAGGTCTTACACGAAATCTCATATCGATGCCAATG
* * * *
2629983 TCTCAGATATGGTCTTACACGTAATCTC
1 TCCCAGACAAGGTCTTACACGAAATCTC
2630011 GGTAACCCTA
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.29
43 66 0.69
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGACAAGGTCTTACACGAAATCTCATATCGATGCCAATG
Found at i:2640621 original size:5 final size:5
Alignment explanation
Indices: 2640611--2640640 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
2640601 TGCCAAAGAT
2640611 TTGAA TTGAA TTGAA TTGAA TATGAA TTGA
1 TTGAA TTGAA TTGAA TTGAA T-TGAA TTGA
2640641 TGTTAAACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TTGAA
Found at i:2641332 original size:25 final size:23
Alignment explanation
Indices: 2641271--2641332 Score: 79
Period size: 25 Copynumber: 2.6 Consensus size: 23
2641261 TATTAGCTCG
*
2641271 TATGAGCTTCCTGTTAATGGCTC
1 TATGAGCTTCCTGTTAATGACTC
*
2641294 TTTAGAGCTTCCTGTTACATGACTC
1 TAT-GAGCTTCCTGTTA-ATGACTC
2641319 ATATGAGCTTCCTG
1 -TATGAGCTTCCTG
2641333 CTATATGGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.06
24 13 0.39
25 16 0.48
26 2 0.06
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (23 bp):
TATGAGCTTCCTGTTAATGACTC
Found at i:2644394 original size:109 final size:110
Alignment explanation
Indices: 2644084--2644468 Score: 571
Period size: 109 Copynumber: 3.5 Consensus size: 110
2644074 TCGATTAAAT
* * *
2644084 GAGAAAAATTGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAATGCAAAATATTGC
1 GAGAAAAATTGACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCCAAACGCAAAACATTGC
* *
2644149 GTTATTTCGAAAGTTTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
66 CTTATTT-GAAA-ATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
*
2644196 GAGAAAAATTGACACCCAGCACCTTAGGGCACG-TTCTATCGAATTTCCCAAACGCAAAACATTG
1 GAGAAAAATTGACACCCAGCACCTTAGGGCACGTTTC-CTCGAATTTCCCAAACGCAAAACATTG
* * *
2644260 CCTTATTTGAAAAGTTTTAAAAGGATATTAAGCCATTTGGTTGAAT
65 CCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
*
2644306 GAG-AAAATTCGACACCCAGCACCTTAGGGCATGTTTCCTCGAATTT-CCAAACGCAAAACATTG
1 GAGAAAAATT-GACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCCAAACGCAAAACATTG
* *
2644369 CCTTATTTTAAAATTTTTAAAAGGATATTTAGCTATTTGGTTGAAC
65 CCTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
* * *
2644415 GAGAAAAATCGACACCCAGCACCTTATGGCACGTTTTCTCGAATTT-CCAAACGC
1 GAGAAAAATTGACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCCAAACGC
2644469 TAAATATTAC
Statistics
Matches: 249, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
109 108 0.43
110 68 0.27
111 9 0.04
112 64 0.26
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (110 bp):
GAGAAAAATTGACACCCAGCACCTTAGGGCACGTTTCCTCGAATTTCCCAAACGCAAAACATTGC
CTTATTTGAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
Found at i:2644623 original size:26 final size:26
Alignment explanation
Indices: 2644594--2644650 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
2644584 TAAATCATGC
*
2644594 ATAAACTATAGCA-AATAAACAAACAA
1 ATAAACTAAAGCATAA-AAACAAACAA
* *
2644620 ATAAACTAAAGCATAAAAATAAACAT
1 ATAAACTAAAGCATAAAAACAAACAA
2644646 ATAAA
1 ATAAA
2644651 TAAGTACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.67, C:0.12, G:0.04, T:0.18
Consensus pattern (26 bp):
ATAAACTAAAGCATAAAAACAAACAA
Found at i:2644761 original size:34 final size:32
Alignment explanation
Indices: 2644681--2644761 Score: 85
Period size: 34 Copynumber: 2.5 Consensus size: 32
2644671 AAAATAAAGG
2644681 AAAATATATA-A-ATATTATAAAATATGAAAA
1 AAAATATATATATATATTATAAAATATGAAAA
* * * * *
2644711 AATATGTATATGTATATTTTAAAATTATTAAAA
1 AAAATATATATATATATTATAAAA-TATGAAAA
2644744 TAAAATATATATATATAT
1 -AAAATATATATATATAT
2644762 GAGTATGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
30 8 0.21
32 10 0.26
33 7 0.18
34 14 0.36
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (32 bp):
AAAATATATATATATATTATAAAATATGAAAA
Found at i:2653084 original size:16 final size:17
Alignment explanation
Indices: 2653063--2653098 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
2653053 ACTTTTAATT
*
2653063 TTTAAC-TAAATCAATA
1 TTTAACATAAATCAACA
2653079 TTTAACATAAATCAACA
1 TTTAACATAAATCAACA
2653096 TTT
1 TTT
2653099 TTATTTAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTAACATAAATCAACA
Found at i:2657219 original size:4 final size:4
Alignment explanation
Indices: 2657200--2657236 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
2657190 GTAATACATA
*
2657200 TAAT TAA- TAAG T-AT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
2657237 AAAGACAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 5 0.17
4 25 0.83
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (4 bp):
TAAT
Found at i:2668554 original size:31 final size:30
Alignment explanation
Indices: 2668510--2668567 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
2668500 TTTTTAATTT
2668510 TTTAAAATATTTATATTATTTTAATTTAATA
1 TTTAAAATATTTATA-TATTTTAATTTAATA
*
2668541 TTTAATAAT-TTTATATATTTTTATTTA
1 TTTAA-AATATTTATATATTTTAATTTA
2668568 TTGAACTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 11 0.44
32 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTAAAATATTTATATATTTTAATTTAATA
Found at i:2668567 original size:30 final size:31
Alignment explanation
Indices: 2668489--2668567 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
2668479 TAGGCTCACC
* *
2668489 TATATACTTTTTTTTTAATTTTTTAAAATATT
1 TATATA-TTTTTATTTAATTATTTAAAATATT
*
2668521 TATATTATTTTAATTTAA-TATTTAATAAT-TT
1 TATA-TATTTTTATTTAATTATTTAA-AATATT
2668552 TATATATTTTTATTTA
1 TATATATTTTTATTTA
2668568 TTGAACTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 11 0.27
31 12 0.29
32 16 0.39
33 2 0.05
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (31 bp):
TATATATTTTTATTTAATTATTTAAAATATT
Found at i:2677022 original size:131 final size:131
Alignment explanation
Indices: 2676789--2677079 Score: 459
Period size: 131 Copynumber: 2.3 Consensus size: 131
2676779 TAGTGTACCG
2676789 ACTTAAACTCTTTCTAAGAACATGAT----G-ACAACTGTTCTGATTGTGACTCGTGAAGAAGAA
1 ACTTAAACTCTTTCTAAGAACATGATGGCAGTACAACTGTTCTGATTGTGACTCGTGAAGAAGAA
* * * *
2676849 GAGTAAGGCTAAACGCTATATCTATATATAGTGTCCCCACTGGTGACTGAGTATATGTCCTAAGC
66 GAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCCCCACTGGTGACTGAGTATATGTCCTAAAC
2676914 A
131 A
* *
2676915 ACTTAAACTCTTTCTAAGAACATGATGGCAGTATAACTGTTCTGATTGTGACTCGTGGAGAAGAA
1 ACTTAAACTCTTTCTAAGAACATGATGGCAGTACAACTGTTCTGATTGTGACTCGTGAAGAAGAA
*
2676980 GAGGAAGGCTAAACGCTAAATCTATAAATAGTG-CCCAGACTGGTGACTGAGTATATGTCCTAAA
66 GAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCCC-CACTGGTGACTGAGTATATGTCCTAAA
2677044 CA
130 CA
*
2677046 ACTCAAACTCTTTCTAAGAACATGATGGCAGTAC
1 ACTTAAACTCTTTCTAAGAACATGATGGCAGTAC
2677080 TGTTTGTATA
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
126 26 0.17
130 4 0.03
131 120 0.80
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (131 bp):
ACTTAAACTCTTTCTAAGAACATGATGGCAGTACAACTGTTCTGATTGTGACTCGTGAAGAAGAA
GAGGAAGGCTAAACGCTAAATCTATAAATAGTGTCCCCACTGGTGACTGAGTATATGTCCTAAAC
A
Found at i:2683014 original size:15 final size:15
Alignment explanation
Indices: 2682994--2683024 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2682984 CTATCATCTT
2682994 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
2683009 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
2683024 T
1 T
2683025 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:2683058 original size:20 final size:20
Alignment explanation
Indices: 2683033--2683074 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
2683023 CTTACAACGG
*
2683033 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
2683053 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
2683073 TA
1 TA
2683075 ACTCTAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:2686475 original size:18 final size:18
Alignment explanation
Indices: 2686442--2686476 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2686432 ACCAGCAGAT
* *
2686442 GGCATACTGACTTGTTGG
1 GGCATACTAACCTGTTGG
2686460 GGCATACTAACCTGTTG
1 GGCATACTAACCTGTTG
2686477 TGGAGAGCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (18 bp):
GGCATACTAACCTGTTGG
Found at i:2687738 original size:15 final size:15
Alignment explanation
Indices: 2687718--2687748 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
2687708 CTATCATCTT
2687718 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
2687733 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
2687748 T
1 T
2687749 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:2687782 original size:20 final size:20
Alignment explanation
Indices: 2687757--2687798 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
2687747 CTTACAACGG
*
2687757 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
2687777 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
2687797 TA
1 TA
2687799 ACTCTAACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:2688491 original size:16 final size:16
Alignment explanation
Indices: 2688470--2688508 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2688460 TTATGTGTAT
2688470 GGTAAG-CAAATAATAA
1 GGTAAGTCAAAT-ATAA
*
2688486 GGTAAGTGAAATATAA
1 GGTAAGTCAAATATAA
2688502 GGTAAGT
1 GGTAAGT
2688509 ATTATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.23
Consensus pattern (16 bp):
GGTAAGTCAAATATAA
Found at i:2688628 original size:36 final size:37
Alignment explanation
Indices: 2688559--2688658 Score: 107
Period size: 36 Copynumber: 2.7 Consensus size: 37
2688549 ATATGTGTGG
* *
2688559 AATTGAAATGAATAT-TGACTTGAAAATGGAAAAGT-A
1 AATTGAATTGAAT-TGTGACTTGAAAATGAAAAAGTGA
*
2688595 AATTTGAATTGAATTGTGA-TTGAAAGTGAAAAAGTGA
1 AA-TTGAATTGAATTGTGACTTGAAAATGAAAAAGTGA
* *
2688632 AATTGAATTGAAATGTGAATTTGAAAA
1 AATTGAATTGAATTGTG-ACTTGAAAA
2688659 GTATGTGTTG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
36 31 0.57
37 17 0.31
38 6 0.11
ACGTcount: A:0.47, C:0.01, G:0.21, T:0.31
Consensus pattern (37 bp):
AATTGAATTGAATTGTGACTTGAAAATGAAAAAGTGA
Found at i:2688857 original size:21 final size:21
Alignment explanation
Indices: 2688805--2688891 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
2688795 GGCCTTGCCG
2688805 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
*
2688826 ACATTAGGCACTTTATGTGTCGT
1 --ATCAGGCACTTTATGTGTCGT
* **
2688849 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
* *
2688870 TTCAGGCA-ATTATGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
2688890 AT
1 AT
2688892 ACTGATCAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
20 10 0.19
21 24 0.44
23 20 0.37
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (21 bp):
ATCAGGCACTTTATGTGTCGT
Found at i:2689942 original size:22 final size:23
Alignment explanation
Indices: 2689907--2689949 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
2689897 CATGCATATG
**
2689907 AAATAACTTTAAAT-TTTAAAGA
1 AAATAACTAAAAATGTTTAAAGA
2689929 AAATAACTAAAAATGTTTAAA
1 AAATAACTAAAAATGTTTAAA
2689950 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
AAATAACTAAAAATGTTTAAAGA
Found at i:2699702 original size:66 final size:66
Alignment explanation
Indices: 2699596--2699728 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
2699586 GGATCGAGTA
2699596 GAGGGACCAAGCCAGACATTGCCAATTCCATGCAAATGGTGGTAGTTGTATCATGTATATAGAAA
1 GAGGGACCAAGCCAGACATTGCCAATTCCATGCAAATGGTGGTAGTTGTATCATGTATATAGAAA
2699661 G
66 G
*
2699662 GAGGGACCAAGCCAGACATTGCCAATTCCATGCAAATGGTGGTAGTTGTATCTTGTATATAGAAA
1 GAGGGACCAAGCCAGACATTGCCAATTCCATGCAAATGGTGGTAGTTGTATCATGTATATAGAAA
2699727 G
66 G
2699728 G
1 G
2699729 CATCCTTAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (66 bp):
GAGGGACCAAGCCAGACATTGCCAATTCCATGCAAATGGTGGTAGTTGTATCATGTATATAGAAA
G
Found at i:2701379 original size:17 final size:17
Alignment explanation
Indices: 2701354--2701398 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
2701344 AAATAATATA
2701354 AAATAAAAAATTAATTAT
1 AAAT-AAAAATTAATTAT
* *
2701372 AAATAAAATTTATTTAT
1 AAATAAAAATTAATTAT
*
2701389 AATTAAAAAT
1 AAATAAAAAT
2701399 AAATAAAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATAAAAATTAATTAT
Found at i:2703544 original size:3 final size:3
Alignment explanation
Indices: 2703536--2703565 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
2703526 TTATAAGTGT
2703536 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2703566 ATGAAATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:2705095 original size:22 final size:21
Alignment explanation
Indices: 2705070--2705116 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
2705060 AGTTTTCACC
2705070 ATTTCTAAACTCGAGTATCGAT
1 ATTTCTAAA-TCGAGTATCGAT
* * *
2705092 ATTTTTACATCTAGTATCGAT
1 ATTTCTAAATCGAGTATCGAT
2705113 ATTT
1 ATTT
2705117 AACCAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45
Consensus pattern (21 bp):
ATTTCTAAATCGAGTATCGAT
Found at i:2705542 original size:19 final size:19
Alignment explanation
Indices: 2705518--2705557 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
2705508 ACTCAGGTCC
2705518 GGTGACTGGGCCGAGTAAG
1 GGTGACTGGGCCGAGTAAG
2705537 GGTGACTGGGCCGAGTAAG
1 GGTGACTGGGCCGAGTAAG
2705556 GG
1 GG
2705558 ATGTTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.50, T:0.15
Consensus pattern (19 bp):
GGTGACTGGGCCGAGTAAG
Found at i:2705661 original size:21 final size:21
Alignment explanation
Indices: 2705635--2705686 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
2705625 CGATGTGTGG
* *
2705635 TGAGATTAGTTACTATAGCGA
1 TGAGATTAGATACTATAGCAA
*
2705656 TGAGATTGGATACTATAGCAA
1 TGAGATTAGATACTATAGCAA
*
2705677 TGAGTTTAGA
1 TGAGATTAGA
2705687 AACAATGATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.33
Consensus pattern (21 bp):
TGAGATTAGATACTATAGCAA
Found at i:2705993 original size:21 final size:20
Alignment explanation
Indices: 2705951--2705989 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
2705941 TTTGAATAAT
2705951 TAAAAATGTATTTATCATTA
1 TAAAAATGTATTTATCATTA
2705971 TAAAAA-GTATTTAT-ATTA
1 TAAAAATGTATTTATCATTA
2705989 T
1 T
2705990 TATATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 8 0.42
20 6 0.32
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
TAAAAATGTATTTATCATTA
Found at i:2717941 original size:16 final size:16
Alignment explanation
Indices: 2717904--2717945 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
2717894 TTAATCATAT
*
2717904 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
2717920 TT-AAATATATTATAA
1 TTAAAATATATTATAA
2717935 TTAAAATATAT
1 TTAAAATATAT
2717946 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:2717952 original size:14 final size:15
Alignment explanation
Indices: 2717913--2717954 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
2717903 TTTAAACATA
*
2717913 ATTATTATTAAATAT
1 ATTATAATTAAATAT
2717928 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
2717942 A-TATAATTTAATA
1 ATTATAATTAAATA
2717955 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:2718072 original size:14 final size:15
Alignment explanation
Indices: 2718023--2718074 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
2718013 ATAAAGGATA
2718023 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
2718038 TATTAAATATATTAT
1 AATTAAATATATTAT
2718053 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
2718066 AATTTAATA
1 AATTAAATA
2718075 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:2718312 original size:14 final size:15
Alignment explanation
Indices: 2718263--2718314 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
2718253 ATAAAAGATA
2718263 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
2718278 TATTAAATATATTAT
1 AATTAAATATATTAT
2718293 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
2718306 AATTTAATA
1 AATTAAATA
2718315 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:2718432 original size:14 final size:15
Alignment explanation
Indices: 2718383--2718434 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
2718373 ATAAAGGATA
2718383 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
2718398 TATTAAATATATTAT
1 AATTAAATATATTAT
2718413 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
2718426 AATTTAATA
1 AATTAAATA
2718435 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:2718552 original size:14 final size:15
Alignment explanation
Indices: 2718504--2718554 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
2718494 TAAACGACAC
*
2718504 ATTAACATA-ATTATT
1 ATTAA-ATATATTATA
2718519 ATTAAATATATTATA
1 ATTAAATATATTATA
2718534 ATTAAA-ATA-TATA
1 ATTAAATATATTATA
*
2718547 ATTTAATA
1 ATTAAATA
2718555 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTAAATATATTATA
Found at i:2718690 original size:120 final size:120
Alignment explanation
Indices: 2717907--2718679 Score: 1440
Period size: 120 Copynumber: 6.4 Consensus size: 120
2717897 ATCATATTTA
2717907 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
2717972 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAGGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
2718027 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
2718092 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
*
2718147 AACATAATTATTATTAAATATATTATAATAAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
2718212 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
2718267 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
2718332 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAGGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
2718387 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
2718452 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAACGACACATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
2718507 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
2718572 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
* * *
2718627 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
2718680 TAAAATAATT
Statistics
Matches: 638, Mismatches: 14, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
120 636 1.00
121 2 0.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
Found at i:2718750 original size:26 final size:28
Alignment explanation
Indices: 2718720--2718780 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
2718710 TATGAATTTG
*
2718720 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
2718746 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
2718774 TAAAATT
1 TATAATT
2718781 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:2718778 original size:47 final size:46
Alignment explanation
Indices: 2718727--2718870 Score: 113
Period size: 47 Copynumber: 3.1 Consensus size: 46
2718717 TTGTATAATT
2718727 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTATTATTA-ATATAATTTAATAATAATATATAATTTCA
* ** * *
2718774 TAAAAT--TCT-TGA-TAATA-AATTTTCTTATATGAATTTATACAATT--
1 TAAAATAAT-TATTATTAATATAA-TTTAATA-AT-AATATATA-ATTTCA
* *
2718818 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTATTATT-AATATAATTTAATAATAATATATAATTTCA
2718865 TAAAAT
1 TAAAAT
2718871 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 26
0.65 0.11 0.24
Matches are distributed among these distances:
42 2 0.03
43 8 0.11
44 10 0.14
45 14 0.19
46 12 0.17
47 15 0.21
48 9 0.12
49 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (46 bp):
TAAAATAATTATTATTAATATAATTTAATAATAATATATAATTTCA
Found at i:2718789 original size:101 final size:93
Alignment explanation
Indices: 2718620--2718902 Score: 315
Period size: 91 Copynumber: 3.0 Consensus size: 93
2718610 ACTATAAAAG
* * * *
2718620 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT--
* *
2718683 AATAATTATAACTAATAAATTATATTATATGAATTTGT
63 --T-A--ATAA-T-ATAAATTTTATTATATGAATTTAT
* * *
2718721 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
*
2718786 T-A-ATAAATTTTCTTATATGAATTTAT
66 TAATATAAATTTTATTATATGAATTTAT
* *
2718812 ACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
* *
2718877 TAATA-AAATGTTCTTATATGAATTTA
66 TAATATAAATTTTATTATATGAATTTA
2718903 CTAAAATCAA
Statistics
Matches: 162, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
91 82 0.51
92 21 0.13
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 3 0.02
101 50 0.31
102 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
TAATATAAATTTTATTATATGAATTTAT
Found at i:2718790 original size:91 final size:90
Alignment explanation
Indices: 2718695--2718902 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 90
2718685 TAATTATAAC
* * * * *
2718695 TAATAAATTATATTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
2718760 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
2718786 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
2718851 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
2718877 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
2718903 CTAAAATCAA
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
91 86 0.80
92 21 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:2718862 original size:44 final size:43
Alignment explanation
Indices: 2718720--2718862 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 43
2718710 TATGAATTTG
* *
2718720 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
2718764 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
2718811 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
2718855 TATAATTT
1 TATAATTT
2718863 CATAAAATTC
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.43
45 7 0.09
46 7 0.09
47 22 0.30
48 3 0.04
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:2718877 original size:47 final size:47
Alignment explanation
Indices: 2718745--2718883 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
2718735 TTATTATTAC
* *
2718745 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
2718792 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
2718836 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
2718883 A
1 A
2718884 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:2720325 original size:11 final size:11
Alignment explanation
Indices: 2720311--2720337 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
2720301 AAAAATCAAT
2720311 ACAAAAGTTTC
1 ACAAAAGTTTC
2720322 ACAAAAGTTTC
1 ACAAAAGTTTC
2720333 ACAAA
1 ACAAA
2720338 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:2721933 original size:15 final size:15
Alignment explanation
Indices: 2721913--2721948 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
2721903 ATAATATGTA
2721913 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
2721928 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
2721943 TAATTG
1 TAATTG
2721949 TTGGTATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (15 bp):
TAATTGACCTAAAAT
Found at i:2722540 original size:21 final size:21
Alignment explanation
Indices: 2722477--2722540 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
2722467 AGATTGAACA
2722477 TAATTAAAGGTTGAACATAAT
1 TAATTAAAGGTTGAACATAAT
* * *
2722498 T-ATTATTA-TTTGAATA-ATAT
1 TAATTA-AAGGTTGAACATA-AT
2722518 TAATTAAAGGTTGAACATAAT
1 TAATTAAAGGTTGAACATAAT
2722539 TA
1 TA
2722541 TATATTAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 1 0.03
20 14 0.44
21 16 0.50
22 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.41
Consensus pattern (21 bp):
TAATTAAAGGTTGAACATAAT
Found at i:2736648 original size:18 final size:18
Alignment explanation
Indices: 2736611--2736659 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
2736601 GTACTTATGA
*
2736611 TTTTTTTTGTTTTCGATT
1 TTTTTTTTGTTTTCAATT
2736629 TTTTTTTTGTTTT-AACTT
1 TTTTTTTTGTTTTCAA-TT
* *
2736647 TTATTTTTATTTT
1 TTTTTTTTGTTTT
2736660 TGTTCTCGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.80
Consensus pattern (18 bp):
TTTTTTTTGTTTTCAATT
Found at i:2737351 original size:6 final size:6
Alignment explanation
Indices: 2737342--2737375 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
2737332 AATTATTAGT
2737342 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTT
2737376 ATCAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTA
Found at i:2742050 original size:47 final size:48
Alignment explanation
Indices: 2741980--2742071 Score: 159
Period size: 47 Copynumber: 1.9 Consensus size: 48
2741970 AGTCGAGGCA
*
2741980 ATATATTTTGTTTTATATATTTATTTTGATTTAATAAGATGTCTTACG
1 ATATATTTTGTTTTATATATTTATTATGATTTAATAAGATGTCTTACG
*
2742028 ATATA-TTTGTTTTATATGTTTATTATGATTTAATAAGATGTCTT
1 ATATATTTTGTTTTATATATTTATTATGATTTAATAAGATGTCTT
2742072 CGTAATTCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
47 37 0.88
48 5 0.12
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (48 bp):
ATATATTTTGTTTTATATATTTATTATGATTTAATAAGATGTCTTACG
Found at i:2745397 original size:6 final size:6
Alignment explanation
Indices: 2745386--2745417 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
2745376 GCTTGAGGTG
*
2745386 GGCATA GGCATA GGCATA GGCATA GGTATA GG
1 GGCATA GGCATA GGCATA GGCATA GGCATA GG
2745418 GTGAAGCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.38, T:0.19
Consensus pattern (6 bp):
GGCATA
Found at i:2745679 original size:22 final size:24
Alignment explanation
Indices: 2745638--2745759 Score: 89
Period size: 23 Copynumber: 5.2 Consensus size: 24
2745628 GTTAAATTAT
2745638 ATTATATTTAAATAATTTAATAT-A
1 ATTAT-TTTAAATAATTTAATATAA
*
2745662 ATTATTTTAAGTAA-TTAATATAA
1 ATTATTTTAAATAATTTAATATAA
*
2745685 ATTATTTTTAAA-ATTTATAATATATA
1 ATTA-TTTTAAATAATT-TAATATA-A
* *
2745711 AATATTTTTAA-AATTTAA-ATATA
1 ATTATTTTAAATAATTTAATATA-A
*
2745734 ATAATATTT-AAT-ATTTAA-ATAA
1 ATTAT-TTTAAATAATTTAATATAA
2745756 ATTA
1 ATTA
2745760 ATATAATAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
22 11 0.13
23 33 0.40
24 18 0.22
25 16 0.20
26 4 0.05
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (24 bp):
ATTATTTTAAATAATTTAATATAA
Found at i:2745723 original size:26 final size:25
Alignment explanation
Indices: 2745679--2745763 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 25
2745669 TAAGTAATTA
2745679 ATATAAATTATTTTTAAAATTTATAAT
1 ATATAAA-TATTTTTAAAATTTA-AAT
2745706 ATATAAATATTTTTAAAATTTAAAT
1 ATATAAATATTTTTAAAATTTAAAT
*
2745731 ATA-ATAATA--TTTAATATTTAAAT
1 ATATA-AATATTTTTAAAATTTAAAT
* *
2745754 AAATTAATAT
1 ATATAAATAT
2745764 AATAATATGT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
23 19 0.37
24 1 0.02
25 10 0.19
26 15 0.29
27 7 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATAAATATTTTTAAAATTTAAAT
Found at i:2745729 original size:17 final size:17
Alignment explanation
Indices: 2745691--2745750 Score: 54
Period size: 16 Copynumber: 3.7 Consensus size: 17
2745681 ATAAATTATT
*
2745691 TTTAAA-ATTTATAATA
1 TTTAAATATTTATAAAA
* *
2745707 TATAAATATTTTTAAAA
1 TTTAAATATTTATAAAA
* *
2745724 TTTAAATA-TAATAATA
1 TTTAAATATTTATAAAA
2745740 TTT-AATATTTA
1 TTTAAATATTTA
2745751 AATAAATTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
15 4 0.12
16 15 0.44
17 15 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTAAATATTTATAAAA
Found at i:2745738 original size:33 final size:32
Alignment explanation
Indices: 2745701--2745793 Score: 86
Period size: 32 Copynumber: 2.9 Consensus size: 32
2745691 TTTAAAATTT
* *
2745701 ATAATATATAAATATTTTTAA-AATTTAAATATA
1 ATAATAT-TAAATATTTTAAATAAATT-AATATA
*
2745734 ATAATATTTAATA-TTTAAATAAATTAATATA
1 ATAATATTAAATATTTTAAATAAATTAATATA
*
2745765 ATAATATGTACAATA--TTAAATAATTTAAT
1 ATAATAT-TA-AATATTTTAAATAAATTAAT
2745794 TTTTTATATA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
31 18 0.35
32 23 0.44
33 11 0.21
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (32 bp):
ATAATATTAAATATTTTAAATAAATTAATATA
Found at i:2745766 original size:31 final size:32
Alignment explanation
Indices: 2745728--2745793 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
2745718 TTAAAATTTA
*
2745728 AATATAATAATAT-T-TAATATTTAAATAAATT
1 AATATAATAATATGTACAATA-TTAAATAAATT
*
2745759 AATATAATAATATGTACAATATTAAATAATTT
1 AATATAATAATATGTACAATATTAAATAAATT
2745791 AAT
1 AAT
2745794 TTTTTATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 13 0.42
32 14 0.45
33 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (32 bp):
AATATAATAATATGTACAATATTAAATAAATT
Found at i:2746713 original size:51 final size:50
Alignment explanation
Indices: 2746551--2746909 Score: 205
Period size: 51 Copynumber: 7.4 Consensus size: 50
2746541 AGAAATAAAT
2746551 AAATAAATTAGGGTTTAGGGTTATTTGAGTAAATTAATTATAAAATT--AAA
1 AAATAAATTAGGGTTTAGGGTTA-TTGAGTAAATTAATTAT-AAATTAAAAA
* * * * **
2746601 AAATAGATTAGGGTTTAGGGTT-TAGAGT---TTAGAGTTTTTAAGAAAAAA
1 AAATAAATTAGGGTTTAGGGTTATTGAGTAAATTA-A-TTATAAATTAAAAA
*
2746649 ATTAACTAAATTAGGGTTTAAGGTTATTGAGTAAATTAATTATAAATTTAAAAA
1 A--AA-TAAATTAGGGTTTAGGGTTATTGAGTAAATTAATTATAAA-TTAAAAA
* ** *
2746703 AAATAGATTAGGGTTTAGGGTT-TT---T-AAGGAA-TA-AAA-T----C
1 AAATAAATTAGGGTTTAGGGTTATTGAGTAAATTAATTATAAATTAAAAA
* * * * **
2746741 AAATAAATTAGGATTTGGGGTTACTTTAGTAAAATAATTATAAATTTTAAA
1 AAATAAATTAGGGTTTAGGGTTA-TTGAGTAAATTAATTATAAATTAAAAA
* *
2746792 AAATAGATTAGGGTTTAGTG-T-TT-AG-AAATT--TTA-AGAA--AAAAA
1 AAATAAATTAGGGTTTAGGGTTATTGAGTAAATTAATTATA-AATTAAAAA
* *
2746834 TCAAATAAATTAGAGTTTGGGGTTACTTGAGTAAATTAATTATAAATTAAAAA
1 --AAATAAATTAGGGTTTAGGGTTA-TTGAGTAAATTAATTATAAATTAAAAA
*
2746887 AAATTAGATTAGGGTTTAGGGTT
1 AAA-TAAATTAGGGTTTAGGGTT
2746910 TAAGGTTTTT
Statistics
Matches: 232, Mismatches: 38, Indels: 76
0.67 0.11 0.22
Matches are distributed among these distances:
38 19 0.08
40 2 0.01
42 4 0.02
43 2 0.01
44 28 0.12
45 8 0.03
46 14 0.06
47 9 0.04
48 13 0.06
49 5 0.02
50 26 0.11
51 58 0.25
52 24 0.10
53 10 0.04
54 7 0.03
55 3 0.01
ACGTcount: A:0.43, C:0.01, G:0.18, T:0.37
Consensus pattern (50 bp):
AAATAAATTAGGGTTTAGGGTTATTGAGTAAATTAATTATAAATTAAAAA
Found at i:2746856 original size:95 final size:94
Alignment explanation
Indices: 2746487--2746952 Score: 465
Period size: 95 Copynumber: 4.9 Consensus size: 94
2746477 ATTTCTTAAT
* * * * *
2746487 TAAATTAATTAT-AATTTTAAAAAA-ATATTAGGATTTAGTGTTTATG-GTTTTTAAAGAAATAA
1 TAAATTAATTATAAATTTTAAAAAATAGATTAGGGTTTAGGGTTTA-GAATTTTT-AAGAAAAAA
*
2746549 AT-AAATAAATTAGGGTTTAGGGTTATTTGAG
64 ATCAAATAAATTAGGGTTTGGGGTTA-TTGAG
*
2746580 TAAATTAATTATAAA-ATTAAAAAATAGATTAGGGTTTAGGGTTTAGAGTTTAGAGTTTTTAAGA
1 TAAATTAATTATAAATTTTAAAAAATAGATTAGGGTTTAGGGTTT--AG---A-A-TTTTTAAGA
* * **
2746644 AAAAAATTAACTAAATTAGGGTTTAAGGTTATTGAG
59 AAAAAATCAAATAAATTAGGGTTTGGGGTTATTGAG
* *
2746680 TAAATTAATTATAAATTTAAAAAAAATAGATTAGGGTTTA-GG----G--TTTTTAAGGAATAAA
1 TAAATTAATTATAAATTT-TAAAAAATAGATTAGGGTTTAGGGTTTAGAATTTTTAA-GAAAAAA
* *
2746738 ATCAAATAAATTAGGATTTGGGGTTACTTTAG
64 ATCAAATAAATTAGGGTTTGGGGTTA-TTGAG
* * *
2746770 TAAAATAATTATAAATTTTAAAAAATAGATTAGGGTTTAGTGTTTAGAAATTTTAAGAAAAAAAT
1 TAAATTAATTATAAATTTTAAAAAATAGATTAGGGTTTAGGGTTTAGAATTTTTAAGAAAAAAAT
*
2746835 CAAATAAATTAGAGTTTGGGGTTACTTGAG
66 CAAATAAATTAGGGTTTGGGGTTA-TTGAG
** * *
2746865 TAAATTAATTATAAATTAAAAAAAATTAGATTAGGGTTTAGGGTTTA-AGGTTTTTAA-ATAAAA
1 TAAATTAATTATAAATTTTAAAAAA-TAGATTAGGGTTTAGGGTTTAGA-ATTTTTAAGAAAAAA
* *
2746928 ATTAAATAAGTTAGGGTTTGGGGTT
64 ATCAAATAAATTAGGGTTTGGGGTT
2746953 TAGGGTTAAT
Statistics
Matches: 314, Mismatches: 35, Indels: 46
0.79 0.09 0.12
Matches are distributed among these distances:
88 7 0.02
89 47 0.15
90 22 0.07
93 20 0.06
94 19 0.06
95 87 0.28
96 33 0.11
100 30 0.10
101 29 0.09
102 20 0.06
ACGTcount: A:0.43, C:0.01, G:0.18, T:0.38
Consensus pattern (94 bp):
TAAATTAATTATAAATTTTAAAAAATAGATTAGGGTTTAGGGTTTAGAATTTTTAAGAAAAAAAT
CAAATAAATTAGGGTTTGGGGTTATTGAG
Found at i:2753968 original size:12 final size:12
Alignment explanation
Indices: 2753927--2753968 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
2753917 TTTTCGTGTC
* *
2753927 AAAATCAGATAA
1 AAAATTAGAAAA
2753939 AAAA-TACGAAAA
1 AAAATTA-GAAAA
2753951 AAAATTAGAAAA
1 AAAATTAGAAAA
2753963 AAAATT
1 AAAATT
2753969 TTTTGGGTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.88
13 2 0.08
ACGTcount: A:0.71, C:0.05, G:0.07, T:0.17
Consensus pattern (12 bp):
AAAATTAGAAAA
Found at i:2754106 original size:115 final size:112
Alignment explanation
Indices: 2753835--2754328 Score: 659
Period size: 114 Copynumber: 4.4 Consensus size: 112
2753825 CGGATATATG
* * *
2753835 AAAAAAAACAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGTCGGCACCCAGTACACAGTAC
1 AAAAAAAATAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAATAC
* *
2753900 AAAG-AAAAAAATAATTTTTTTCGTGTCAAAATCAGATAAAAAATAC
66 AAAGAAAAAAAATATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
*
2753946 GAAAAAAAATTAGAAAAAAAATTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAA
1 -AAAAAAAA-TA-AAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAA
2754011 TACAAAGAAAAAAAAATTTATTTTTTTTCGTGTCAGAATCAGAT-AAAAATAC
63 TACAAAG-AAAAAAAA--TATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
*
2754063 AAAAAAAATTAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTA
1 AAAAAAAA-TAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAATA
*
2754128 CAAAGAAAAAAAA-A-----TTCCGTGTCAGAATCAGATAAAAAATAC
65 CAAAGAAAAAAAATATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
* *
2754170 GAAAAAAAT-AAAAAAAAA--TTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTACACAATAC
1 AAAAAAAATAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAATAC
*
2754232 AAAGAAAAAAAATTTTAAATTTTTTTTCGTGTCAGAATCAGATAAAAAAATAGG
66 AAAGAAAAAAAA---T--ATTTTTTTTCGTGTCAGAATCAGAT-AAAAAATA-C
* *
2754286 AAAAAAAATAGAAAAAAAAAATTTTGGGTGTTGGCCTGTCAAT
1 AAAAAAAATA-AAAAAAAAATTTTTGGGTGCTGGCCTGTCAAT
2754329 ATTATAATTT
Statistics
Matches: 343, Mismatches: 15, Indels: 40
0.86 0.04 0.10
Matches are distributed among these distances:
103 54 0.16
105 9 0.03
106 19 0.06
107 15 0.04
109 1 0.00
111 1 0.00
112 8 0.02
113 1 0.00
114 82 0.24
115 65 0.19
116 26 0.08
117 8 0.02
118 33 0.10
120 21 0.06
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (112 bp):
AAAAAAAATAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAATAC
AAAGAAAAAAAATATTTTTTTTCGTGTCAGAATCAGATAAAAAATAC
Found at i:2754292 original size:12 final size:11
Alignment explanation
Indices: 2754275--2754304 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
2754265 AGAATCAGAT
2754275 AAAAAAATAGGA
1 AAAAAAATA-GA
2754287 AAAAAAATAGA
1 AAAAAAATAGA
2754298 AAAAAAA
1 AAAAAAA
2754305 AATTTTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (11 bp):
AAAAAAATAGA
Found at i:2754305 original size:12 final size:12
Alignment explanation
Indices: 2754275--2754305 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
2754265 AGAATCAGAT
*
2754275 AAAAAAATAGGA
1 AAAAAAATAGAA
2754287 AAAAAAATAGAA
1 AAAAAAATAGAA
2754299 AAAAAAA
1 AAAAAAA
2754306 ATTTTGGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (12 bp):
AAAAAAATAGAA
Found at i:2754396 original size:12 final size:12
Alignment explanation
Indices: 2754374--2754410 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
2754364 TACATTTTTC
2754374 TTTTTTC-AATT
1 TTTTTTCTAATT
2754385 TTTTTTCTAATT
1 TTTTTTCTAATT
2754397 TTTTTT-T-ATT
1 TTTTTTCTAATT
2754407 TTTT
1 TTTT
2754411 ATCTGATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 7 0.28
11 8 0.32
12 10 0.40
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTCTAATT
Found at i:2754587 original size:117 final size:114
Alignment explanation
Indices: 2754381--2754793 Score: 665
Period size: 112 Copynumber: 3.6 Consensus size: 114
2754371 TTCTTTTTTC
*
2754381 AATTTTTTTTCTAATTTTTTT-TTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAAGTT
1 AATTTTTTTT-T-ATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAA--T
2754445 TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
62 TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
*
2754498 AATTTTTTTTTTATTTTTTTCGTAATTTTTTATCTGATTCTGACACGAAAAAAATAAATAAAATT
1 AA-TTTTTTTTTATTTTTTTCGT-ATTTTTTATCTGATTCTGACACGAAAAAAA-AATTAAAATT
*
2754563 TTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
63 TTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
*
2754615 AAATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACG-AAAAAAAATTAAAA--TT
1 AATTTTTTTTTA-TTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTT
2754677 TTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
65 TTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
* *
2754727 AATTTTTTTTTATTTTTTTAGTATTTTTTATCTGATTCTGACACGAAAAAAAAATT-AATTTTTT
1 AATTTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTTT
2754791 TTT
66 TTT
2754794 GTACTGTATT
Statistics
Matches: 279, Mismatches: 9, Indels: 20
0.91 0.03 0.06
Matches are distributed among these distances:
111 34 0.12
112 72 0.26
113 6 0.02
114 7 0.03
115 6 0.02
116 40 0.14
117 69 0.25
118 38 0.14
119 7 0.03
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (114 bp):
AATTTTTTTTTATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTTT
TTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
Found at i:2754734 original size:112 final size:114
Alignment explanation
Indices: 2754381--2754802 Score: 657
Period size: 117 Copynumber: 3.7 Consensus size: 114
2754371 TTCTTTTTTC
2754381 AATTTTTTTTCTAATTTTTTTT--TATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAAGT
1 AATTTTTTTT-T-ATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAA--
2754444 TTTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
62 -TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
*
2754498 AATTTTTTTTT-TATTTTTTTCGTAATTTTTTATCTGATTCTGACACGAAAAAAATAAATAAAAT
1 AATTTTTTTTTAT-TTTTTTTCGT-ATTTTTTATCTGATTCTGACACGAAAAAAA-AATTAAAA-
*
2754562 TTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
62 TTTTTTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
*
2754615 AAATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACG-AAAAAAAATTAAAA-TTT
1 AATTTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTT
2754678 TTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
66 TTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
*
2754727 AATTTTTTTTTA-TTTTTTTAGTATTTTTTATCTGATTCTGACACGAAAAAAAAATT--AA-TTT
1 AATTTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTT
2754788 TTT-TTTGTACTGTAT
66 TTTCTTTGTACTGTAT
2754803 TTTTTTTATT
Statistics
Matches: 291, Mismatches: 7, Indels: 22
0.91 0.02 0.07
Matches are distributed among these distances:
109 12 0.04
110 8 0.03
111 32 0.11
112 72 0.25
114 8 0.03
115 13 0.04
116 24 0.08
117 84 0.29
118 31 0.11
119 7 0.02
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.45
Consensus pattern (114 bp):
AATTTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAAAATTTT
TTTCTTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
Found at i:2754807 original size:73 final size:71
Alignment explanation
Indices: 2754730--2754863 Score: 234
Period size: 73 Copynumber: 1.9 Consensus size: 71
2754720 GCACCCAAAT
2754730 TTTTTTTTA-TTTTTTTAGTATTTTTTATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTT
1 TTTTTTTTATTTTTTTTAGTATTTTTTATCTGATTCTGACACG-AAAAAAAA-TAATTTTTTTTT
2754794 GTACTGTA
64 GTACTGTA
*
2754802 TTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTT
1 TTTTTTTTATTTTTTTTAGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTT
2754864 CTTTGTACTG
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
71 11 0.18
72 17 0.28
73 32 0.53
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.58
Consensus pattern (71 bp):
TTTTTTTTATTTTTTTTAGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTGT
ACTGTA
Found at i:2754811 original size:184 final size:189
Alignment explanation
Indices: 2754617--2754967 Score: 597
Period size: 184 Copynumber: 1.9 Consensus size: 189
2754607 AGCACCCAAA
2754617 ATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATTAAAATTTTTTC
1 ATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAA-TAAAATTTTTTC
*
2754682 TTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAGCACCC-A-AA-TTTTTTTT-T-ATTT
65 TTTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAATTTTTTTTTCTAATTT
2754742 TTTTAGTA-TTTTTTATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGT
130 TTTTAGTATTTTTTTATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGT
**
2754801 ATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTCT
1 ATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAAAATTTTTTCT
* *
2754866 TTGTACTGTGTACTGGGTGCCGGCCATTGACAGTCCAACACCCAAGAATTTTTTTTTCTAATTTT
66 TTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAATTTTTTTTTCTAATTTT
*
2754931 TTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAA
131 TTTAGTATTTTTTTATCTGATTCTGACACGAAAAAAA
2754968 TTAAAATTTT
Statistics
Matches: 155, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
183 51 0.33
184 53 0.34
185 2 0.01
186 8 0.05
187 1 0.01
188 11 0.07
189 29 0.19
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (189 bp):
ATTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAAATAAAATTTTTTCT
TTGTACTGTATACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAATTTTTTTTTCTAATTTT
TTTAGTATTTTTTTATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGT
Found at i:2754831 original size:300 final size:300
Alignment explanation
Indices: 2754502--2755048 Score: 892
Period size: 301 Copynumber: 1.8 Consensus size: 300
2754492 CACCCAAATT
2754502 TTTTTTTTATTTTTTTCGTAATTTTTTATCTGATTCTGACACGAAAAAAATAAATAAAATTTTTT
1 TTTTTTTTATTTTTTTCGTAATTTTTTATCTGATTCTGACACG--AAAAA-AAAT--AATTTTTT
* *
2754567 TTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAA-AA-TTTTTTT-TATT
61 TTCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAATTTTTTTTCTAAT
2754629 TTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATTAAAA-TTTTTTCTTTGTACTGT
126 TTTTTTCGTATTTTTTTATCTGATTCTGACACG-AAAAAAATTAAAATTTTTTTCTTTGTACTGT
* * *
2754692 ATACTGGGTGCCGGCCATTGACAGGCCAGCACC-CAAATTTTTTTTTATTTTTTTAGTATTTTTT
190 ATACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAATTTTTTTAATTTTTTTAGTATTTTTT
2754756 ATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGTA
255 ATCTGATTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGTA
2754802 TTTTTTTTATTTTTTTTCGT-ATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTCT
1 TTTTTTTTA-TTTTTTTCGTAATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTCT
*
2754866 TTGTACTGTGTACTGGGTGCCGGCCATTGACAGTCCAACACCCAAGAATTTTTTTTTCTAATTTT
65 TTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAA-TTTTTTTTCTAATTTT
*
2754931 TTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATTAAAATTTTTTTTCTTTGTACTGTGTA
129 TTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATTAAAA-TTTTTTTCTTTGTACTGTATA
2754996 CTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAATTTTTTTAATTTTTTT
193 CTGGGTGCCGGCCATTGACAGGCCAGCACC-AAAAAATTTTTTTAATTTTTTT
2755049 TTTCGTATAT
Statistics
Matches: 230, Mismatches: 7, Indels: 17
0.91 0.03 0.07
Matches are distributed among these distances:
295 55 0.24
296 2 0.01
297 4 0.02
298 12 0.05
299 26 0.11
300 54 0.23
301 59 0.26
303 18 0.08
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (300 bp):
TTTTTTTTATTTTTTTCGTAATTTTTTATCTGATTCTGACACGAAAAAAAATAATTTTTTTTCTT
TGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCCAAGAATTTTTTTTCTAATTTTTT
TCGTATTTTTTTATCTGATTCTGACACGAAAAAAATTAAAATTTTTTTCTTTGTACTGTATACTG
GGTGCCGGCCATTGACAGGCCAGCACCAAAAAATTTTTTTAATTTTTTTAGTATTTTTTATCTGA
TTCTGACACGAAAAAAAAATTAATTTTTTTTTGTACTGTA
Found at i:2754947 original size:116 final size:115
Alignment explanation
Indices: 2754802--2755048 Score: 383
Period size: 118 Copynumber: 2.1 Consensus size: 115
2754792 TTGTACTGTA
* *
2754802 TTTTTTTTATTTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAA-ATAATTTTTTTTCT
1 TTTTTTTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAATAAAATTTTTTTTCT
* * * *
2754866 TTGTACTGTGTACTGGGTGCCGGCCATTGACAGTCCAACACCCAAGAATT
66 TTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCAAAAAAAT
2754916 TTTTTTTCTAATTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAATTAAAATTTTTTT
1 TTTTTTT-TAATTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAA-TAAAATTTTTTT
*
2754981 TCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAAAAAA-
63 TCTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCAAAAAAAT
2755033 -TTTTTTTAATTTTTTT
1 TTTTTTTTAATTTTTTT
2755049 TTTCGTATAT
Statistics
Matches: 122, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
114 7 0.06
115 23 0.19
116 35 0.29
118 57 0.47
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (115 bp):
TTTTTTTTAATTTTTTTCGTATTTTTTATCTGATTCTGACACGAAAAAAATAAAATTTTTTTTCT
TTGTACTGTGTACTGGGTGCCGGCCATTGACAGGCCAACACCAAAAAAAT
Found at i:2755523 original size:22 final size:21
Alignment explanation
Indices: 2755498--2755567 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 21
2755488 ATAAATATAT
2755498 AAAAATACATAAATATTTTCAA
1 AAAAATA-ATAAATATTTTCAA
*
2755520 AAAATATAAT-AATAATTT-AA
1 AAAA-ATAATAAATATTTTCAA
*
2755540 AATATATAAAATAAATATTTTCAA
1 AA-A-A-ATAATAAATATTTTCAA
2755564 AAAA
1 AAAA
2755568 GTAAAATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 4 0.10
21 8 0.20
22 13 0.32
23 11 0.28
24 4 0.10
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATAATAAATATTTTCAA
Found at i:2755984 original size:10 final size:10
Alignment explanation
Indices: 2755947--2755993 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
2755937 TATTATTGTT
2755947 TATTTTTATA
1 TATTTTTATA
2755957 TATATTTTA-A
1 TAT-TTTTATA
* * *
2755967 AATATTTATG
1 TATTTTTATA
2755977 TATTTTTATA
1 TATTTTTATA
2755987 TATTTTT
1 TATTTTT
2755994 TTGAAATTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
9 4 0.14
10 20 0.69
11 5 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
TATTTTTATA
Found at i:2756910 original size:22 final size:22
Alignment explanation
Indices: 2756862--2756910 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
2756852 GCTTCTGTAC
*
2756862 TTTTTAAAATAATTAAATTATAT
1 TTTTTAAAAT-ATTAAATTATAA
*
2756885 TTTTTAAAAT-TTAAAATTTTAA
1 TTTTTAAAATATT-AAATTATAA
2756907 TTTT
1 TTTT
2756911 CACTCAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 11 0.48
23 10 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTAAAATATTAAATTATAA
Found at i:2767863 original size:20 final size:20
Alignment explanation
Indices: 2767840--2767900 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
2767830 CTATATTTCT
* *
2767840 AAATATCTAAAGATTTTTCA
1 AAATTTCTAAAGATTTATCA
* * * *
2767860 AAATTTATAAGGCTTTACCA
1 AAATTTCTAAAGATTTATCA
2767880 AAATTTCTAAAGATTTATCA
1 AAATTTCTAAAGATTTATCA
2767900 A
1 A
2767901 TGCTTTTAAG
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (20 bp):
AAATTTCTAAAGATTTATCA
Found at i:2768014 original size:19 final size:20
Alignment explanation
Indices: 2767976--2768020 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
2767966 TTTGATATAA
2767976 CAAAATTTGAAAGGACTCAC
1 CAAAATTTGAAAGGACTCAC
* *
2767996 CAAAATTT-CAAGGATTCAC
1 CAAAATTTGAAAGGACTCAC
2768015 CAAAAT
1 CAAAAT
2768021 ATTTATAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.47, C:0.20, G:0.11, T:0.22
Consensus pattern (20 bp):
CAAAATTTGAAAGGACTCAC
Found at i:2768579 original size:14 final size:13
Alignment explanation
Indices: 2768560--2768590 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
2768550 ATAATATTAA
2768560 AAAAATTAAAATAT
1 AAAAATTAAAAT-T
2768574 AAAAATTAAAATT
1 AAAAATTAAAATT
2768587 AAAA
1 AAAA
2768591 TTTGAGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:2774845 original size:4 final size:4
Alignment explanation
Indices: 2774836--2774865 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
2774826 TTCTCTTCCC
2774836 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
2774866 ATACCTCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:2792493 original size:4 final size:4
Alignment explanation
Indices: 2792484--2792516 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
2792474 AACAATCCCC
2792484 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
2792517 AGCTGTGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:2793412 original size:39 final size:41
Alignment explanation
Indices: 2793217--2793418 Score: 237
Period size: 42 Copynumber: 4.9 Consensus size: 41
2793207 ACATTTTCCC
* *
2793217 CAATGACAAGCACAAGCAATGGTATCTTTGGTGGTTCATCTG
1 CAAT-ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
2793259 CAAGTACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
1 CAA-TACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
* * * * *
2793301 CAACTACAAGCACGGGCACTGGTTTATTTGGTGGTACATCAG
1 CAA-TACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
* *
2793343 CAGCTACAAGCACAGGCAATGGCATCTTTGGTGGTACATCTG
1 CA-ATACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
* * * *
2793385 C-A-ACAAGCACAGGTAGTAGTATTTTTGGTGGTAC
1 CAATACAAGCACAGGCAATGGTATCTTTGGTGGTAC
2793419 GTCTTTGCCA
Statistics
Matches: 137, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 27 0.20
42 109 0.80
43 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
CAATACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTG
Found at i:2795655 original size:11 final size:11
Alignment explanation
Indices: 2795639--2795665 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
2795629 GAGCACTTCA
2795639 TAATCTTATAT
1 TAATCTTATAT
2795650 TAATCTTATAT
1 TAATCTTATAT
2795661 TAATC
1 TAATC
2795666 CTACGTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATCTTATAT
Found at i:2796117 original size:27 final size:28
Alignment explanation
Indices: 2796051--2796131 Score: 146
Period size: 27 Copynumber: 2.9 Consensus size: 28
2796041 CTTGCTTTCA
2796051 AACCCAAATCAGAATGGGTTCATCTTTG
1 AACCCAAATCAGAATGGGTTCATCTTTG
*
2796079 AACCCAAATCAGAATGGGTTCAT-TTTT
1 AACCCAAATCAGAATGGGTTCATCTTTG
2796106 AACCCAAATCAGAATGGGTTCATCTT
1 AACCCAAATCAGAATGGGTTCATCTT
2796132 CGGTGAAAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 26 0.51
28 25 0.49
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (28 bp):
AACCCAAATCAGAATGGGTTCATCTTTG
Found at i:2798986 original size:6 final size:6
Alignment explanation
Indices: 2798975--2799008 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
2798965 GAAGCAAAGA
*
2798975 AAGCTC AAGCTC AAGCTC GAGCTC AAGCTAC AAG
1 AAGCTC AAGCTC AAGCTC AAGCTC AAGCT-C AAG
2799009 GGCAAGAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 21 0.84
7 4 0.16
ACGTcount: A:0.35, C:0.29, G:0.21, T:0.15
Consensus pattern (6 bp):
AAGCTC
Found at i:2801803 original size:40 final size:39
Alignment explanation
Indices: 2801759--2801895 Score: 136
Period size: 40 Copynumber: 3.5 Consensus size: 39
2801749 ACACACCAGT
2801759 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
1 TTGACACCCAGTGCCTCATCAGATAATTCGAAGT-ATAAA
* * * *
2801799 TTGACACCCAGTGTCTCATTAGTTAAATCGAAG--TAAA
1 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTATAAA
* * * *
2801836 TTGGCACCCGGTGCCTCATC-GAATTAATCCAAAGTAGTAAA
1 TTGACACCCAGTGCCTCATCAG-A-TAATTCGAAGTA-TAAA
*
2801877 TTGACACCCAGTGTCTCAT
1 TTGACACCCAGTGCCTCAT
2801896 TGACTCGAAG
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
36 1 0.01
37 20 0.26
38 7 0.09
40 29 0.38
41 20 0.26
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (39 bp):
TTGACACCCAGTGCCTCATCAGATAATTCGAAGTATAAA
Found at i:2802093 original size:24 final size:24
Alignment explanation
Indices: 2802056--2802102 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
2802046 TATATATACC
2802056 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
2802080 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
2802103 CCATTCAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:2804846 original size:5 final size:5
Alignment explanation
Indices: 2804836--2804861 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
2804826 TGAGCATTCG
2804836 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
2804862 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:2805902 original size:9 final size:9
Alignment explanation
Indices: 2805888--2805924 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
2805878 TATAGTTTGA
2805888 TATTCGAAT
1 TATTCGAAT
2805897 TATTCGAAT
1 TATTCGAAT
*
2805906 TATTCGAGT
1 TATTCGAAT
2805915 TATTCGAAT
1 TATTCGAAT
2805924 T
1 T
2805925 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:2805995 original size:9 final size:9
Alignment explanation
Indices: 2805978--2806008 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
2805968 TCGAGTTGAT
2805978 TCGAATAAC
1 TCGAATAAC
*
2805987 TCGATTAAC
1 TCGAATAAC
2805996 TCGAATAAC
1 TCGAATAAC
2806005 TCGA
1 TCGA
2806009 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:2807228 original size:18 final size:18
Alignment explanation
Indices: 2807186--2807230 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
2807176 TACTAATAGT
* *
2807186 TCACATCTTTTGATGAGC
1 TCACATCTTTGGATGAAC
* *
2807204 TCGCATCTTTGGGTGAAC
1 TCACATCTTTGGATGAAC
2807222 TCACATCTT
1 TCACATCTT
2807231 CAAATGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (18 bp):
TCACATCTTTGGATGAAC
Found at i:2808004 original size:42 final size:42
Alignment explanation
Indices: 2807945--2808110 Score: 217
Period size: 42 Copynumber: 4.0 Consensus size: 42
2807935 TTCCCCAGTG
* *
2807945 ACAAGCACAAGCAATGGTATCTTCGGTGGTACATCTGCAAGT
1 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAAGT
*
2807987 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAACT
1 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAAGT
* ** * * *
2808029 ACAAGCACGGGCACGGGTTTATTTGGTGGTACATCAGC-AGCT
1 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAAG-T
* *
2808071 ACAAGCACAGGCAATGGCATCTTTGGGGGTACATCTGCAA
1 ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAA
2808111 CAAGCACAGG
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
41 1 0.01
42 102 0.98
43 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (42 bp):
ACAAGCACAGGCAATGGTATCTTTGGTGGTACATCTGCAAGT
Found at i:2812082 original size:42 final size:42
Alignment explanation
Indices: 2812023--2812189 Score: 217
Period size: 42 Copynumber: 4.0 Consensus size: 42
2812013 AACTGTGCTT
* * * *
2812023 GTTGCTGATGTACCACCAGAGATGCCATTGCCAGTGCTTGTA
1 GTTGCAGATGTACCACCAAAGATACCATTGCCTGTGCTTGTA
* * * * *
2812065 GTTGCAGATGTATCACCAAATAAACCAGTGCCCGTGCTTGTA
1 GTTGCAGATGTACCACCAAAGATACCATTGCCTGTGCTTGTA
*
2812107 GTTGCAGATGTACAACCAAAGATACCATTGCCTGTGCTTGTA
1 GTTGCAGATGTACCACCAAAGATACCATTGCCTGTGCTTGTA
* * *
2812149 CTTGCAGATGTACCACCGAAGATACCATTGCTTGTGCTTGT
1 GTTGCAGATGTACCACCAAAGATACCATTGCCTGTGCTTGT
2812190 CACTGGGGAA
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 107 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (42 bp):
GTTGCAGATGTACCACCAAAGATACCATTGCCTGTGCTTGTA
Found at i:2816712 original size:2 final size:2
Alignment explanation
Indices: 2816707--2816735 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2816697 TTTTGTTTAT
2816707 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2816736 ATGGATGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2816944 original size:108 final size:104
Alignment explanation
Indices: 2816757--2816967 Score: 336
Period size: 108 Copynumber: 2.0 Consensus size: 104
2816747 AAATAAAAAT
*
2816757 CATATAAATAGGTAATTGATCCCTTCTTCATGTATAAAAGCCAAGAAGAGGGTGTTTCCTCTTTA
1 CATATAAATAGGTAATTGATCCC-TCTTCATGCATAAAAGCCAAGAAGAGGGTGTTTCCTCTTTA
2816822 ACAAGTTATACCTCCTCCATGACTAACCTATATATATATA
65 ACAAGTTATACCTCCTCCATGACTAACCTATATATATATA
2816862 CATATAAAATAGGTAATTGAT-CC-CTTCATGCATAAAAGCCAAAGAGAGGGTAGGGTGTTTCCT
1 CATAT-AAATAGGTAATTGATCCCTCTTCATGCATAAAAGCC-AAGA-A--G-AGGGTGTTTCCT
2816925 CTTTAACAAGTTATACCTCCTCCATGACTAACCTATATATATA
60 CTTTAACAAGTTATACCTCCTCCATGACTAACCTATATATATA
2816968 AACGTTGGAA
Statistics
Matches: 99, Mismatches: 1, Indels: 9
0.91 0.01 0.08
Matches are distributed among these distances:
103 16 0.16
104 4 0.04
105 8 0.08
106 15 0.15
107 1 0.01
108 55 0.56
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (104 bp):
CATATAAATAGGTAATTGATCCCTCTTCATGCATAAAAGCCAAGAAGAGGGTGTTTCCTCTTTAA
CAAGTTATACCTCCTCCATGACTAACCTATATATATATA
Found at i:2818437 original size:27 final size:27
Alignment explanation
Indices: 2818406--2818463 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
2818396 ATTATTTTAT
* * *
2818406 TGGTGGCGCCTTTCTCATAGGCGCCAC
1 TGGTGACGCCTATCTAATAGGCGCCAC
* *
2818433 TGGTGACTCCTATCTAATAGGCGTCAC
1 TGGTGACGCCTATCTAATAGGCGCCAC
2818460 TGGT
1 TGGT
2818464 CAAATAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.29
Consensus pattern (27 bp):
TGGTGACGCCTATCTAATAGGCGCCAC
Found at i:2818647 original size:106 final size:104
Alignment explanation
Indices: 2818495--2818852 Score: 462
Period size: 106 Copynumber: 3.5 Consensus size: 104
2818485 ATAAAATATG
* * *
2818495 TACATTAATAAAAAATCACAAAGCACTAAACTAAACACTAACAATTTATACAACCTAATCATAAA
1 TACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATA-AA-CTAATCATAAA
** *
2818560 TTACTAACAAAATAACTATAAAATTATTTTTTTAACAAAAT
64 TTACTAACAAAATAACTATAAAATTATTTTTAAAAAAAAAT
* *
2818601 TACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATAAATTAATTATAAATT
1 TACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATAAACTAATCATAAATT
* **
2818666 ACTAACAAAATAACTAT--AA-CATTTAAAAAAAAAGAATT
66 ACTAACAAAATAACTATAAAATTATTTTTAAAAAAA-AA-T
* * * *
2818704 TACATTACTAATAAATCA-AAAA----ACACAAAACACTAACAATTTATATAATCTAATCATAAG
1 TACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATA-AA-CTAATCATAAA
2818764 TTACTAACAAAATAACTATAAAATTATTTTTAAAAAAAAAT
64 TTACTAACAAAATAACTATAAAATTATTTTTAAAAAAAAAT
2818805 TACATTACTAAAAAAATCACAAAACTCTAAACTAAACACTAACAATTT
1 TACATTACT-AAAAAATCACAAAACTCTAAACTAAACACTAACAATTT
2818853 TTTTAGTAAT
Statistics
Matches: 216, Mismatches: 23, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
98 21 0.10
99 2 0.01
100 27 0.12
101 18 0.08
102 20 0.09
103 33 0.15
104 28 0.13
105 2 0.01
106 47 0.22
107 18 0.08
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (104 bp):
TACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATAAACTAATCATAAATT
ACTAACAAAATAACTATAAAATTATTTTTAAAAAAAAAT
Found at i:2819085 original size:18 final size:17
Alignment explanation
Indices: 2819062--2819103 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
2819052 CGTTTATTGA
2819062 TTTTTTATTAATGTAATT
1 TTTTTTA-TAATGTAATT
2819080 TTTTTTATAATGTAATT
1 TTTTTTATAATGTAATT
2819097 TTATTTT
1 TT-TTTT
2819104 TATTTGACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTTTATAATGTAATT
Found at i:2819192 original size:20 final size:21
Alignment explanation
Indices: 2819167--2819209 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
2819157 AGGCGTCACC
*
2819167 AATAAAAAAA-TATTTTAAAA
1 AATAAAAAAATTATTATAAAA
2819187 AATAAAAAAATTATTATAAAA
1 AATAAAAAAATTATTATAAAA
2819208 AA
1 AA
2819210 GTGGTGGCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAAAAAATTATTATAAAA
Found at i:2820479 original size:105 final size:105
Alignment explanation
Indices: 2820297--2820507 Score: 404
Period size: 105 Copynumber: 2.0 Consensus size: 105
2820287 GTGATGAAGG
2820297 GGAAAAGAAAGATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATGAGAATGGCA
1 GGAAAAGAAAGATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATGAGAATGGCA
2820362 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
66 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
* *
2820402 GGAAAAGAAAGATCAGACTGATGATGCCAACAAGAGAGCAGCAGATGAAAGCAATGAGAATGGCA
1 GGAAAAGAAAGATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATGAGAATGGCA
2820467 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
66 AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
2820507 G
1 G
2820508 CAACCTTCCT
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.42, C:0.22, G:0.22, T:0.14
Consensus pattern (105 bp):
GGAAAAGAAAGATCAAACTGATGATGCCAACAAGAAAGCAGCAGATGAAAGCAATGAGAATGGCA
AGGAATATTCGTCCACGCCATCCATGCCCCAAAACAATCT
Found at i:2828097 original size:13 final size:13
Alignment explanation
Indices: 2828079--2828103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2828069 TTAACTAAAA
2828079 AATATCCATTAGT
1 AATATCCATTAGT
2828092 AATATCCATTAG
1 AATATCCATTAG
2828104 ATGAAAAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
AATATCCATTAGT
Done.