Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 90 of 185
Found at i:28255094 original size:68 final size:68
Alignment explanation
Indices: 28254931--28255217 Score: 344
Period size: 68 Copynumber: 4.2 Consensus size: 68
28254921 TAGTCTGGCC
** * * * *
28254931 ATGGTCTTACACGGTATGAACCCATGTTTAATGTCCTAGA-GAACTCTATATATTTCCATAG-CT
1 ATGGTCTTACACATTATAAACCCATGTTTACTGTCCT-GACGGACTCTATATGTTTCCATAGCCT
*
28254994 AGTT
65 AGCT
* *
28254998 ATGGTCTTACACATTATAAACCCATGTTTACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTA
1 ATGGTCTTACACATTATAAACCCATGTTTACTGTCCTGACGGACTCTATATGTTTCCATAGCCTA
28255063 GCT
66 GCT
* * * * *
28255066 ATAGTCTCACACATTATAAACCCATGTTTACTATTCTGGCGGACTCTATATGTTTCCATAGCCTA
1 ATGGTCTTACACATTATAAACCCATGTTTACTGTCCTGACGGACTCTATATGTTTCCATAGCCTA
28255131 GCT
66 GCT
* * * * * * * *
28255134 ATGGTTTTACACATTATAAACCCATGTTTACTATCCAGGCGAACTCTTTATATTTCCATAGTCTA
1 ATGGTCTTACACATTATAAACCCATGTTTACTGTCCTGACGGACTCTATATGTTTCCATAGCCTA
28255199 GCT
66 GCT
*
28255202 ATGGTCTTACATATTA
1 ATGGTCTTACACATTA
28255218 AACCTCTCTC
Statistics
Matches: 191, Mismatches: 27, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
66 2 0.01
67 50 0.26
68 139 0.73
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (68 bp):
ATGGTCTTACACATTATAAACCCATGTTTACTGTCCTGACGGACTCTATATGTTTCCATAGCCTA
GCT
Found at i:28255638 original size:68 final size:68
Alignment explanation
Indices: 28255560--28255727 Score: 212
Period size: 68 Copynumber: 2.5 Consensus size: 68
28255550 TCCTGACGGG
* * * *
28255560 CTCTATATGTTGCCATAGCCTAGCTATGGTCTCACACATTACAAACTCATGTTTACTGTTCTGGC
1 CTCTATATGTTGCCATAGCCTAGCTATGGTCTCACACATTACAAACTCATATTTACTATCCAGGC
28255625 -AGA
66 GA-A
* * * *
28255628 CTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACTCATATTTACTATCCAGGC
1 CTCTATATGTTGCCATAGCCTAGCTATGGTCTCACACATTACAAACTCATATTTACTATCCAGGC
28255693 GAA
66 GAA
* * * *
28255696 CTCTTTATATTGCCATAGTCTAGCTATAGTCT
1 CTCTATATGTTGCCATAGCCTAGCTATGGTCT
28255728 TGCATATTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
68 84 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (68 bp):
CTCTATATGTTGCCATAGCCTAGCTATGGTCTCACACATTACAAACTCATATTTACTATCCAGGC
GAA
Found at i:28256006 original size:519 final size:519
Alignment explanation
Indices: 28255026--28256058 Score: 1850
Period size: 519 Copynumber: 2.0 Consensus size: 519
28255016 AACCCATGTT
*
28255026 TACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTAGCTATAGTCTCACACATTATAAACCCAT
1 TACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTAGCTATAGTCTCACACATTACAAACCCAT
*
28255091 GTTTACTATTCTGGCGGACTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACC
66 GTTTACTATTCTGGCAGACTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACC
* * *
28255156 CATGTTTACTATCCAGGCGAACTCTTTATATTTCCATAGTCTAGCTATGGTCTTACATATTAAAC
131 CATATTTACTATCCAGGCGAACTCTTTATATTGCCATAGTCTAGCTATAGTCTTACATATTAAAC
* *
28255221 CTCTCTCGAGATGTCACCCCATAAGACCTATAAACCCCTGTCACGGTGTCACTCCATAGAGTCAA
196 CTCTCTCGAGATGACACCCCATAAGACCTATAAACCCCTGTCACGGTGTCACTCCATACAGTCAA
* * *
28255286 TAGACTATTGCCACAGTTTCACTCTAGCGAGTTAGTCGATAGCATTCCACGACACTTCCTTACTC
261 TAGACTATTGCCACAGTTTCACTCTAGCGAGTCAGTCGATAGAATCCCACGACACTTCCTTACTC
28255351 CCTTATATTCCCTTAACAATCGACTCATTCCTCCATTCTGCTAATTATTCCTAACTTCATCTACC
326 CCTTATATTCCCTTAACAATCGACTCATTCCTCCATTCTGCTAATTATTCCTAACTTCATCTACC
*
28255416 CATCCAAATAAATTACCTTTGTACTTTGTGTATAATATAATCATGCATTACACACACGAGCAAGT
391 CATCCAAATAAATTACCTTTGTACTTTGTGTATAATATAATCATGCATTACACACACGAGCAAGG
28255481 TACTTATTATAAAATACATAGTATGCCATTTATTCAAACACCATATTTCATTCAACAATCATAC
456 TACTTATTATAAAATACATAGTATGCCATTTATTCAAACACCATATTTCATTCAACAATCATAC
* *
28255545 TACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTAGCTATGGTCTCACACATTACAAACTCAT
1 TACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTAGCTATAGTCTCACACATTACAAACCCAT
* *
28255610 GTTTACTGTTCTGGCAGACTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACT
66 GTTTACTATTCTGGCAGACTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACC
*
28255675 CATATTTACTATCCAGGCGAACTCTTTATATTGCCATAGTCTAGCTATAGTCTTGCATATTAAAC
131 CATATTTACTATCCAGGCGAACTCTTTATATTGCCATAGTCTAGCTATAGTCTTACATATTAAAC
* *
28255740 CTCTCTCGAGATGACGCCCCATAGGACCTATAAACCCCTGTCACGGTGTCACTCCATACAGTCAA
196 CTCTCTCGAGATGACACCCCATAAGACCTATAAACCCCTGTCACGGTGTCACTCCATACAGTCAA
* *
28255805 TAGACTATTGTCACGGTTTCACTCTAGCGAGTCAGTCGATAGAATCCCACGACACTTCCTTACTC
261 TAGACTATTGCCACAGTTTCACTCTAGCGAGTCAGTCGATAGAATCCCACGACACTTCCTTACTC
* *
28255870 CCTTTTATTCTCTTAACAATCGACTCATTCCTCCATTCTGCTAATTATTCCTAACTTCATCTACC
326 CCTTATATTCCCTTAACAATCGACTCATTCCTCCATTCTGCTAATTATTCCTAACTTCATCTACC
*
28255935 CATCCAGATAAATTACCTTTGTACTTTGTGTATAATATAATCATGCATTACACACACGAGCAAGG
391 CATCCAAATAAATTACCTTTGTACTTTGTGTATAATATAATCATGCATTACACACACGAGCAAGG
*
28256000 TACTTATTATAAAATACATAGTATGCCATTTATTTAAACACCATATTTCATTCAACAAT
456 TACTTATTATAAAATACATAGTATGCCATTTATTCAAACACCATATTTCATTCAACAAT
28256059 TTTACTTATA
Statistics
Matches: 490, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
519 490 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.34
Consensus pattern (519 bp):
TACTGTCCTGACGGGCTCTATATGTTGCCATAGCCTAGCTATAGTCTCACACATTACAAACCCAT
GTTTACTATTCTGGCAGACTCTATATGTTTCCATAGCCTAGCTATGGTTTTACACATTATAAACC
CATATTTACTATCCAGGCGAACTCTTTATATTGCCATAGTCTAGCTATAGTCTTACATATTAAAC
CTCTCTCGAGATGACACCCCATAAGACCTATAAACCCCTGTCACGGTGTCACTCCATACAGTCAA
TAGACTATTGCCACAGTTTCACTCTAGCGAGTCAGTCGATAGAATCCCACGACACTTCCTTACTC
CCTTATATTCCCTTAACAATCGACTCATTCCTCCATTCTGCTAATTATTCCTAACTTCATCTACC
CATCCAAATAAATTACCTTTGTACTTTGTGTATAATATAATCATGCATTACACACACGAGCAAGG
TACTTATTATAAAATACATAGTATGCCATTTATTCAAACACCATATTTCATTCAACAATCATAC
Found at i:28260059 original size:13 final size:13
Alignment explanation
Indices: 28260041--28260069 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
28260031 GCTTTTCATA
28260041 TAATTTCATTTGT
1 TAATTTCATTTGT
28260054 TAATTTCATTTGT
1 TAATTTCATTTGT
28260067 TAA
1 TAA
28260070 ATAATCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (13 bp):
TAATTTCATTTGT
Found at i:28261574 original size:3 final size:3
Alignment explanation
Indices: 28261566--28261600 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
28261556 AGTTTGTTTA
28261566 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
28261601 AATACTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:28261662 original size:47 final size:47
Alignment explanation
Indices: 28261593--28261691 Score: 198
Period size: 47 Copynumber: 2.1 Consensus size: 47
28261583 TATTATTATT
28261593 ATTATTATAATACTAAATGTGTAGAATTGTGGAGTTCCTAACTCGGA
1 ATTATTATAATACTAAATGTGTAGAATTGTGGAGTTCCTAACTCGGA
28261640 ATTATTATAATACTAAATGTGTAGAATTGTGGAGTTCCTAACTCGGA
1 ATTATTATAATACTAAATGTGTAGAATTGTGGAGTTCCTAACTCGGA
28261687 ATTAT
1 ATTAT
28261692 GTAGGTATAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (47 bp):
ATTATTATAATACTAAATGTGTAGAATTGTGGAGTTCCTAACTCGGA
Found at i:28262076 original size:5 final size:5
Alignment explanation
Indices: 28262066--28262090 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
28262056 GAGCATTCGG
28262066 TCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGAA TCGAA
28262091 AATTTTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
TCGAA
Found at i:28263000 original size:9 final size:9
Alignment explanation
Indices: 28262986--28263022 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
28262976 TATAGTTTGA
28262986 TATTCGAAT
1 TATTCGAAT
28262995 TATTCGAAT
1 TATTCGAAT
*
28263004 TATTCGAGT
1 TATTCGAAT
28263013 TATTCGAAT
1 TATTCGAAT
28263022 T
1 T
28263023 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:28263370 original size:18 final size:18
Alignment explanation
Indices: 28263347--28263480 Score: 85
Period size: 18 Copynumber: 6.9 Consensus size: 18
28263337 TTATTATTAA
28263347 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
28263365 ATATAATTTAAT-AAAAT
1 ATATAATTTAATAAAAAT
* *
28263382 ATATGAATTTACTAAAATT
1 ATAT-AATTTAATAAAAAT
*
28263401 ATA-AGATATAATATTATAAA-
1 ATATA-ATTTAATA--A-AAAT
*
28263421 ATATAATTTAAAATAATTATTATTAA
1 ATATAATTT--AATAA--A--A--AT
*
28263447 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
28263465 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
28263481 TTCTTAGTAT
Statistics
Matches: 92, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
17 10 0.11
18 41 0.45
19 7 0.08
20 9 0.10
21 5 0.05
22 5 0.05
23 1 0.01
24 4 0.04
25 1 0.01
26 9 0.10
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:28263418 original size:15 final size:15
Alignment explanation
Indices: 28263398--28263453 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
28263388 ATTTACTAAA
*
28263398 ATTATAAGATATAAT
1 ATTATAAAATATAAT
28263413 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
28263426 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
28263439 ATTATTAAATATAAT
1 ATTATAAAATATAAT
28263454 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:28263448 original size:26 final size:25
Alignment explanation
Indices: 28263408--28263586 Score: 85
Period size: 26 Copynumber: 7.3 Consensus size: 25
28263398 ATTATAAGAT
*
28263408 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATTAAATATAATTTAAA
28263433 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATTAAATATAATTTAA-A
* *
28263460 AAAATA-TA-T-AATTTAA--TAAA
1 ATAATATTATTAAATATAATTTAAA
** * *
28263480 ATTCTTAGTATTAAATAT--TCTT-AT
1 A-TAATATTATTAAATATAAT-TTAAA
* *
28263504 ATGAAT-TTACTAAAATCATAA--T-AT
1 AT-AATATTA-TTAAAT-ATAATTTAAA
* *
28263528 ATAATACTATAAAATATAATTTAAA
1 ATAATATTATTAAATATAATTTAAA
28263553 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATTAAATATAATTTAA-A
*
28263580 AAAATAT
1 ATAATAT
28263587 ATAATTTAAT
Statistics
Matches: 117, Mismatches: 17, Indels: 39
0.68 0.10 0.23
Matches are distributed among these distances:
20 2 0.02
21 5 0.04
22 6 0.05
23 19 0.16
24 21 0.18
25 14 0.12
26 42 0.36
27 8 0.07
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (25 bp):
ATAATATTATTAAATATAATTTAAA
Found at i:28263469 original size:59 final size:59
Alignment explanation
Indices: 28263406--28263601 Score: 204
Period size: 59 Copynumber: 3.3 Consensus size: 59
28263396 AAATTATAAG
28263406 ATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
1 ATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
* * * * * * ** *
28263465 ATATAATTTAATAAAATTCTTAGTATT-AAAT-ATTCTTATATGAATTTACTAAAATC-ATAAT
1 ATATAATTTAATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAA-CAAAAAT
*
28263526 ATATAATACT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
1 ATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
28263585 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
28263602 TCTTAGTATT
Statistics
Matches: 106, Mismatches: 20, Indels: 22
0.72 0.14 0.15
Matches are distributed among these distances:
58 6 0.06
59 47 0.44
60 16 0.15
61 33 0.31
62 4 0.04
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (59 bp):
ATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAAT
Found at i:28263539 original size:120 final size:120
Alignment explanation
Indices: 28263381--28263623 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
28263371 TTTAATAAAA
* *
28263381 TATATGAATTTACTAAAATTATAAGATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAAGATATAATACTATAAAATATAATTTAAAATAATTATTATTA
28263446 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
*
28263501 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAAGATATAATACTATAAAATATAATTTAAAATAATTATTATTA
28263566 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
28263621 TAT
1 TAT
28263624 GATTGTATCA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAAGATATAATACTATAAAATATAATTTAAAATAATTATTATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:28267574 original size:9 final size:9
Alignment explanation
Indices: 28267560--28267602 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
28267550 GTTTTCGAAT
28267560 TCGAATAAC
1 TCGAATAAC
28267569 TCGAATAAC
1 TCGAATAAC
28267578 TCGAATAAC
1 TCGAATAAC
*
28267587 TCGAATAAT
1 TCGAATAAC
28267596 TCGAATA
1 TCGAATA
28267603 TCAAACTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:28268014 original size:19 final size:20
Alignment explanation
Indices: 28267978--28268016 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
28267968 CAAACTTTTA
28267978 TTCCCCAAAACTTTTTACTT
1 TTCCCCAAAACTTTTTACTT
*
28267998 TTCCCCTAAAC-TTTTACTT
1 TTCCCCAAAACTTTTTACTT
28268017 CTCACCCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
TTCCCCAAAACTTTTTACTT
Found at i:28268024 original size:20 final size:20
Alignment explanation
Indices: 28267979--28268024 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
28267969 AAACTTTTAT
* *
28267979 TCCCCAAAACTTTTTACTTT
1 TCCCCTAAACTTTTTACTTC
28267999 TCCCCTAAAC-TTTTACTTC
1 TCCCCTAAACTTTTTACTTC
28268018 TCACCCT
1 TC-CCCT
28268025 TTACTCTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.22, C:0.37, G:0.00, T:0.41
Consensus pattern (20 bp):
TCCCCTAAACTTTTTACTTC
Found at i:28268639 original size:5 final size:5
Alignment explanation
Indices: 28268629--28268654 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
28268619 CTTGAAAATT
28268629 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
28268655 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:28271784 original size:21 final size:21
Alignment explanation
Indices: 28271760--28271802 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
28271750 GTTAAAGTGG
*
28271760 TGTTGCATTTTTTTAATGTTT
1 TGTTGCATTTTTTGAATGTTT
** *
28271781 TGTTTTATTTTTTGAATTTTT
1 TGTTGCATTTTTTGAATGTTT
28271802 T
1 T
28271803 CATTTTTTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.72
Consensus pattern (21 bp):
TGTTGCATTTTTTGAATGTTT
Found at i:28271793 original size:20 final size:20
Alignment explanation
Indices: 28271767--28271816 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
28271757 TGGTGTTGCA
*
28271767 TTTTTTTAATGTTTT-GTTT
1 TTTTTTTAATGTTTTCATTT
*
28271786 TATTTTTTGAATTTTTTCATTT
1 T-TTTTTT-AATGTTTTCATTT
28271808 TTTTTTTAA
1 TTTTTTTAA
28271817 ATTTTTATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 8 0.31
21 13 0.50
22 4 0.15
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (20 bp):
TTTTTTTAATGTTTTCATTT
Found at i:28271812 original size:21 final size:19
Alignment explanation
Indices: 28271767--28271824 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
28271757 TGGTGTTGCA
* *
28271767 TTTTTTTAATGTTTTGTTT
1 TTTTTTTAATTTTTTATTT
28271786 TATTTTTTGAATTTTTTCATTT
1 T-TTTTTT-AATTTTTT-ATTT
*
28271808 TTTTTTTAAATTTTTAT
1 TTTTTTTAATTTTTTAT
28271825 ACTTCTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.09
20 13 0.39
21 13 0.39
22 4 0.12
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (19 bp):
TTTTTTTAATTTTTTATTT
Found at i:28272106 original size:5 final size:5
Alignment explanation
Indices: 28272096--28272127 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
28272086 CCCACGAACT
28272096 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
28272128 GGAACACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:28278036 original size:22 final size:22
Alignment explanation
Indices: 28277986--28278029 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
28277976 TGAACTTATA
28277986 TAATTAAGTCTTAAATAATTTG
1 TAATTAAGTCTTAAATAATTTG
28278008 TAATTAAGT-TTCAAAT-ATTTG
1 TAATTAAGTCTT-AAATAATTTG
28278029 T
1 T
28278030 CTATTAATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (22 bp):
TAATTAAGTCTTAAATAATTTG
Found at i:28281722 original size:43 final size:42
Alignment explanation
Indices: 28281559--28281723 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 42
28281549 TTTCGATATG
* *
28281559 TGATTACGTGTAAGACCACATCTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCACATCTGGGACATTGGCATCGTATT
** * * *
28281600 TGCAATTTACGTGTAAGACCATGTCTAGGACATCGGCATCGTATA
1 TG--ATTT-CGTGTAAGACCACATCTGGGACATTGGCATCGTATT
* * * * *
28281645 GGAGTTCGTGTAAGACC-CTGTCGGGGACAATGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-ATCTGGGACATTGGCATCG-TATT
* *
28281688 TGATTTCATGTAAGACCACATCTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACCACATCTGGGACATTGGCAT
28281724 TGAATGAGCT
Statistics
Matches: 95, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 36 0.38
44 28 0.29
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACATCTGGGACATTGGCATCGTATT
Found at i:28290830 original size:23 final size:24
Alignment explanation
Indices: 28290798--28290850 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
28290788 TTGAACATCA
*
28290798 ATAATTTGAG-TTTTAAACATGTC
1 ATAATCTGAGATTTTAAACATGTC
*
28290821 ATAATCTGAGCATTTTAAATATGTC
1 ATAATCTGAG-ATTTTAAACATGTC
*
28290846 TTAAT
1 ATAAT
28290851 TTTAACAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.36
25 16 0.64
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.43
Consensus pattern (24 bp):
ATAATCTGAGATTTTAAACATGTC
Found at i:28293642 original size:50 final size:50
Alignment explanation
Indices: 28293573--28293711 Score: 170
Period size: 50 Copynumber: 2.8 Consensus size: 50
28293563 TACTGCAAAT
* * ** * * *
28293573 GCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGGTACCAAC
* ** *
28293623 GTCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGGTACCAAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGGTACCAAC
*
28293673 GCCATGTCCTAGACATGGTCTTACATGAGACCTCTCATA
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATA
28293712 ACCTCAATAA
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCGGTACCAAC
Found at i:28297642 original size:23 final size:23
Alignment explanation
Indices: 28297615--28297668 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 23
28297605 TTGAACATCA
28297615 ATAATT-AGAGTTTTAAACATGTC
1 ATAATTGAGA-TTTTAAACATGTC
*
28297638 ATAATCTGAGCATTTTAAATATGTC
1 ATAAT-TGAG-ATTTTAAACATGTC
*
28297663 TTAATT
1 ATAATT
28297669 TTAACAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 5 0.19
24 2 0.08
25 18 0.69
26 1 0.04
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (23 bp):
ATAATTGAGATTTTAAACATGTC
Found at i:28309304 original size:5 final size:5
Alignment explanation
Indices: 28309294--28309319 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
28309284 TGAGTATTCG
28309294 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
28309320 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:28310352 original size:9 final size:9
Alignment explanation
Indices: 28310338--28310374 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
28310328 TATAGTTTGA
28310338 TATTCGAAT
1 TATTCGAAT
28310347 TATTCGAAT
1 TATTCGAAT
*
28310356 TATTCGAGT
1 TATTCGAAT
28310365 TATTCGAAT
1 TATTCGAAT
28310374 T
1 T
28310375 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:28313768 original size:16 final size:16
Alignment explanation
Indices: 28313747--28313778 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
28313737 TGATTCAAAG
*
28313747 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
28313763 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
28313779 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:28314772 original size:43 final size:43
Alignment explanation
Indices: 28314719--28314968 Score: 331
Period size: 43 Copynumber: 5.8 Consensus size: 43
28314709 TTTGGGAAAG
* *
28314719 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
* *
28314762 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTGTCCCACAAA
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
* * * * *
28314805 CGCTGCTAAAGACAACGAGCTTTTGCGGCGCTTTTCCCAAAAA
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
*
28314848 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTCCCACAAA
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
* * * *
28314891 CACCGCTAAAGAGCACGACCTTTAGCGGCGCTTCTCCTACAAA
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
* * *
28314934 CACCGCTAAAGA-CATTGACCTTTAGCGACGCTTTT
1 CGCCGCTAAAGACCA-CGACCTTTAGCGGCGCTTTT
28314969 TTAAAAACGC
Statistics
Matches: 185, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 2 0.01
43 183 0.99
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (43 bp):
CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:28314966 original size:129 final size:129
Alignment explanation
Indices: 28314719--28314968 Score: 365
Period size: 129 Copynumber: 1.9 Consensus size: 129
28314709 TTTGGGAAAG
* * * *
28314719 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAGACCATGACCTT
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTACCACAAACACCGCTAAAGACCACGACCTT
* * * * * *
28314784 TAGCGGCGCTTGTCCCACAAACGCTGCTAAAGACAACGAGCTTTTGCGGCGCTTTTCCCAAAAA
66 TAGCGGCGCTTCTCCCACAAACACCGCTAAAGACAACGACCTTTAGCGACGCTTTTCCCAAAAA
* *
28314848 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTCCCACAAACACCGCTAAAGAGCACGACCTT
1 CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTACCACAAACACCGCTAAAGACCACGACCTT
* **
28314913 TAGCGGCGCTTCTCCTACAAACACCGCTAAAGACATTGACCTTTAGCGACGCTTTT
66 TAGCGGCGCTTCTCCCACAAACACCGCTAAAGACAACGACCTTTAGCGACGCTTTT
28314969 TTAAAAACGC
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
129 106 1.00
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (129 bp):
CGCCGCTAAAGACCACGACCTTTAGCGGCGCTTCTACCACAAACACCGCTAAAGACCACGACCTT
TAGCGGCGCTTCTCCCACAAACACCGCTAAAGACAACGACCTTTAGCGACGCTTTTCCCAAAAA
Found at i:28315188 original size:19 final size:19
Alignment explanation
Indices: 28315164--28315202 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
28315154 TTATAAAAAT
*
28315164 ATTAAAAGTTAAAATGATA
1 ATTAAAAGTCAAAATGATA
28315183 ATTAAAAGTCAAAATGATA
1 ATTAAAAGTCAAAATGATA
28315202 A
1 A
28315203 AAATATTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (19 bp):
ATTAAAAGTCAAAATGATA
Found at i:28320774 original size:9 final size:9
Alignment explanation
Indices: 28320757--28321273 Score: 201
Period size: 9 Copynumber: 61.7 Consensus size: 9
28320747 CCTATAAATG
28320757 AGTTATGTA
1 AGTTATGTA
*
28320766 AGTTGTGT-
1 AGTTATGTA
28320774 A-TTATGTA
1 AGTTATGTA
*
28320782 AGTTGTGT-
1 AGTTATGTA
*
28320790 A-TAATGTA
1 AGTTATGTA
28320798 AGTTATGTA
1 AGTTATGTA
**
28320807 AGAAATGT-
1 AGTTATGTA
28320815 A-TTATGTA
1 AGTTATGTA
*
28320823 AGTTATTTA
1 AGTTATGTA
28320832 AGTTATGTA
1 AGTTATGTA
*
28320841 AGTTGTGT-
1 AGTTATGTA
28320849 A-TTATGTA
1 AGTTATGTA
28320857 AGTTATGTA
1 AGTTATGTA
**
28320866 AGAAATGT-
1 AGTTATGTA
28320874 A-TTATGTA
1 AGTTATGTA
*
28320882 AGTTGTGT-
1 AGTTATGTA
28320890 A-TTATGTA
1 AGTTATGTA
28320898 AGTTATGTA
1 AGTTATGTA
**
28320907 AGAAATGT-
1 AGTTATGTA
28320915 A-TTATGTA
1 AGTTATGTA
*
28320923 AGTTGTGT-
1 AGTTATGTA
* *
28320931 A-TAATGTT
1 AGTTATGTA
**
28320939 AGTTATCAA
1 AGTTATGTA
28320948 AGTTATGT-
1 AGTTATGTA
28320956 A-TTATGTA
1 AGTTATGTA
*
28320964 AGTTATTTA
1 AGTTATGTA
28320973 AG----GTA
1 AGTTATGTA
*
28320978 AGTTGTGT-
1 AGTTATGTA
28320986 A-TTATGTA
1 AGTTATGTA
28320994 AGTTATGTA
1 AGTTATGTA
***
28321003 AAAAATGT-
1 AGTTATGTA
28321011 A-TTATGTA
1 AGTTATGTA
*
28321019 AGTTGTGT-
1 AGTTATGTA
* *
28321027 A-TAATGTT
1 AGTTATGTA
**
28321035 AGTTATCAA
1 AGTTATGTA
28321044 AGTTATGT-
1 AGTTATGTA
28321052 A-TTATGTA
1 AGTTATGTA
*
28321060 AGTTATTTA
1 AGTTATGTA
28321069 AG----GTA
1 AGTTATGTA
*
28321074 AGTTGTGT-
1 AGTTATGTA
28321082 A-TTATGTA
1 AGTTATGTA
28321090 AGTTAT-TA
1 AGTTATGTA
*
28321098 TGTTATTATGTA
1 AG---TTATGTA
* * *
28321110 ACTTGTGCA
1 AGTTATGTA
*
28321119 AGTTTATATACA
1 AG-TTATGT--A
*
28321131 AGTTAATATA
1 AGTT-ATGTA
28321141 TATGTTATGTA
1 -A-GTTATGTA
* *
28321152 GGTTGTGT-
1 AGTTATGTA
28321160 A-TTATGTA
1 AGTTATGTA
28321168 AGTTATGTA
1 AGTTATGTA
***
28321177 AAAAATGT-
1 AGTTATGTA
28321185 A-TTATGTA
1 AGTTATGTA
*
28321193 AGTTGTGT-
1 AGTTATGTA
* *
28321201 A-TAATGTT
1 AGTTATGTA
**
28321209 AGTTATCAA
1 AGTTATGTA
28321218 AGTTATGT-
1 AGTTATGTA
28321226 A-TTATGTA
1 AGTTATGTA
*
28321234 AGTTATTTA
1 AGTTATGTA
28321243 AGTTATGTA
1 AGTTATGTA
*
28321252 AGTTGTGT-
1 AGTTATGTA
28321260 A-TTATGTA
1 AGTTATGTA
28321268 AGTTAT
1 AGTTAT
28321274 TATTTTTAAA
Statistics
Matches: 367, Mismatches: 85, Indels: 112
0.65 0.15 0.20
Matches are distributed among these distances:
5 8 0.02
7 89 0.24
8 40 0.11
9 203 0.55
10 4 0.01
11 11 0.03
12 12 0.03
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (9 bp):
AGTTATGTA
Found at i:28320780 original size:16 final size:16
Alignment explanation
Indices: 28320759--28321277 Score: 153
Period size: 16 Copynumber: 34.1 Consensus size: 16
28320749 TATAAATGAG
*
28320759 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
28320775 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
28320791 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
28320807 --A-G-AA---ATGTA
1 TTATGTAAGTTATGTA
*
28320816 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
28320833 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
28320850 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
28320866 --A-G-AA---ATGTA
1 TTATGTAAGTTATGTA
*
28320875 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
28320891 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
28320907 --A-G-AA---ATGTA
1 TTATGTAAGTTATGTA
*
28320916 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
28320932 -TA---ATGTTA-G--
1 TTATGTAAGTTATGTA
**
28320941 TTATCAAAGTTATGTA
1 TTATGTAAGTTATGTA
28320957 TTATGTAAGTTAT-T-
1 TTATGTAAGTTATGTA
* * *
28320971 TAAGGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
28320987 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
**
28321005 AAATGT-A-TTATGTAA
1 TTATGTAAGTTATGT-A
* *
28321020 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
28321036 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
28321053 TTATGTAAGTTAT-T-
1 TTATGTAAGTTATGTA
* * *
28321067 TAAGGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
28321083 TTATGTAAG---T-TA
1 TTATGTAAGTTATGTA
*
28321095 TTATGTTA-TTATGTAA
1 TTATGTAAGTTATGT-A
* * *
28321111 CTTGTGCAAGTT-TATA
1 -TTATGTAAGTTATGTA
* * * *
28321127 TACAAGTTAA-TATATATG
1 T-TATG-TAAGT-TATGTA
* *
28321145 TTATGTAGGTTGTGTA
1 TTATGTAAGTTATGTA
28321161 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGT--A
**
28321179 AAATGT-A-TTATGTAA
1 TTATGTAAGTTATGT-A
* *
28321194 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
28321210 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
*
28321227 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
28321244 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
28321261 TTATGTAAGTTAT-TA
1 TTATGTAAGTTATGTA
28321276 TT
1 TT
28321278 TTTAAAATTA
Statistics
Matches: 372, Mismatches: 71, Indels: 121
0.66 0.13 0.21
Matches are distributed among these distances:
9 15 0.04
10 2 0.01
11 4 0.01
12 22 0.06
13 15 0.04
14 25 0.07
15 16 0.04
16 196 0.53
17 27 0.07
18 50 0.13
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:28320785 original size:25 final size:25
Alignment explanation
Indices: 28320757--28320890 Score: 105
Period size: 25 Copynumber: 5.4 Consensus size: 25
28320747 CCTATAAATG
28320757 AGTTATGTAAGTTGTGTATTATGTA
1 AGTTATGTAAGTTGTGTATTATGTA
* * *
28320782 AGTTGTGTATA-ATGT-AAGTTATGTA
1 AGTTATGTA-AGTTGTGTA-TTATGTA
** * *
28320807 AGAAATGT-A-TTATGTAAGTTATTTA
1 AGTTATGTAAGTTGTGT-A-TTATGTA
28320832 AGTTATGTAAGTTGTGTATTATGTA
1 AGTTATGTAAGTTGTGTATTATGTA
***
28320857 AGTTATGTAAGAAATGTATTATGTA
1 AGTTATGTAAGTTGTGTATTATGTA
*
28320882 AGTTGTGTA
1 AGTTATGTA
28320891 TTATGTAAGT
Statistics
Matches: 85, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
23 3 0.04
24 1 0.01
25 73 0.86
26 3 0.04
27 5 0.06
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (25 bp):
AGTTATGTAAGTTGTGTATTATGTA
Found at i:28320805 original size:41 final size:40
Alignment explanation
Indices: 28320753--28321271 Score: 254
Period size: 41 Copynumber: 12.8 Consensus size: 40
28320743 TATACCTATA
*
28320753 AATG-AGTTATGTAAGTTGTGTATTATGTAAGTTGTGTAT
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
** *
28320792 AATGTAAGTTATGTAAGAAATGTATTATGTAAGTTAT-T-T
1 AATGT-AGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
* * *
28320831 -A---AGTTATGTAAGTTGTGTATTATGTAAGTTATGTAAGA
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGTGT-A-T
* * *
28320869 AATGTA-TTATGTAAGTTGTGTATTATGTAAGTTATGTAAGA
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGTGT-A-T
* * * * **
28320910 AATGTA-TTATGTAAGTTGTGTATAATGTTAGTTATCAAAGT
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGT-GTA-T
* * *
28320951 TATGTA-TTATGTAAGTTAT-T-TAAGGTAAGTTGTGTAT
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
* ***
28320988 TATGTAAGTTATGTAAAAAATGTATTATGTAAGTTGTGTAT
1 AATGT-AGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
** * *
28321029 AATGTTAGTTATCAAAGTTATGTATTATGTAAGTTATTTAAGGT
1 AATG-TAGTTATGTAAGTTATGTATTATGTAAGTTGTGT-A--T
* *
28321073 AAGTTGT-GTATTATGTAAGTTATTATGTTATTATGTAACTTGTGCA-
1 AA--TGTAG--TTATGTAAG---TTATG-TATTATGTAAGTTGTGTAT
* * * * * *
28321119 AGTTTA-TATACAAGTTAA-TATATATGTTATGTAGGTTGTGTAT
1 AATGTAGT-T--ATG-TAAGT-TATGTATTATGTAAGTTGTGTAT
* ***
28321162 TATGTAAGTTATGTAAAAAATGTATTATGTAAGTTGTGTAT
1 AATGT-AGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
** *
28321203 AATGTTAGTTATCAAAGTTATGTATTATGTAAGTTAT-T-T
1 AATG-TAGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
*
28321242 -A---AGTTATGTAAGTTGTGTATTATGTAAGTT
1 AATGTAGTTATGTAAGTTATGTATTATGTAAGTT
28321272 ATTATTTTTA
Statistics
Matches: 376, Mismatches: 66, Indels: 81
0.72 0.13 0.15
Matches are distributed among these distances:
34 54 0.14
35 1 0.00
37 6 0.02
38 4 0.01
39 27 0.07
40 4 0.01
41 208 0.55
42 22 0.06
43 6 0.02
44 8 0.02
45 4 0.01
46 13 0.03
49 6 0.02
50 13 0.03
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.45
Consensus pattern (40 bp):
AATGTAGTTATGTAAGTTATGTATTATGTAAGTTGTGTAT
Found at i:28320903 original size:25 final size:25
Alignment explanation
Indices: 28320775--28321277 Score: 178
Period size: 25 Copynumber: 20.7 Consensus size: 25
28320765 AAGTTGTGTA
* *
28320775 TTATGTAAGTTGTGTATAATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
**
28320800 TTATGTAAGAAATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
28320825 TTATTTAAGTTATGTAAGTTGTGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
**
28320850 TTATGTAAGTTATGTAAGAAATGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
28320875 TTATGTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
**
28320900 TTATGTAAGAAATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * **
28320925 TTGTGT-A-TAATGTTAGTTATCAAAG
1 TTATGTAAGTTATG-TA-TTATGTAAG
*
28320950 TTATGT-A-TTATGTAAGTTATTTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
28320975 ----GTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
***
28320996 TTATGTAAAAAATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * **
28321021 TTGTGT-A-TAATGTTAGTTATCAAAG
1 TTATGTAAGTTATG-TA-TTATGTAAG
*
28321046 TTATGT-A-TTATGTAAGTTATTTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
28321071 ----GTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
28321092 TTAT-T-A--TGT-TATTATGTAAC
1 TTATGTAAGTTATGTATTATGTAAG
* * **
28321112 TTGTGCAAG-T-T-TA-TATACAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
28321133 TTAATATATATGTTATGTAGGTTGTGT-A-
1 TT-ATGTA-A-GTTATGTA--TTATGTAAG
**
28321161 TTATGTAAGTTATGTAAAAAATGT-A-
1 TTATGTAAGTTATGT--ATTATGTAAG
* * *
28321186 TTATGTAAGTTGTGTATAATGTTAG
1 TTATGTAAGTTATGTATTATGTAAG
**
28321211 TTATCAAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
28321236 TTATTTAAGTTATGTAAGTTGTGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
28321261 TTATGTAAGTTAT-TATT
1 TTATGTAAGTTATGTATT
28321278 TTTAAAATTA
Statistics
Matches: 369, Mismatches: 69, Indels: 83
0.71 0.13 0.16
Matches are distributed among these distances:
20 13 0.04
21 30 0.08
22 12 0.03
23 32 0.09
24 14 0.04
25 240 0.65
26 6 0.02
27 17 0.05
28 2 0.01
29 1 0.00
30 2 0.01
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:28320981 original size:30 final size:30
Alignment explanation
Indices: 28320947--28321096 Score: 121
Period size: 30 Copynumber: 4.8 Consensus size: 30
28320937 TTAGTTATCA
28320947 AAGTTATGTATTATGTAAGTTATTTAAGGT
1 AAGTTATGTATTATGTAAGTTATTTAAGGT
* *
28320977 AAGTTGTGTATTATGTAAGTTATGTAA---
1 AAGTTATGTATTATGTAAGTTATTTAAGGT
* *
28321004 AA--AATGTATTATGTAAGTTGTGTATAATGTTAGTTAT
1 AAGTTATGTATTATGTAAGTTAT-T-TAA-G---G---T
28321041 CAAAGTTATGTATTATGTAAGTTATTTAAGGT
1 --AAGTTATGTATTATGTAAGTTATTTAAGGT
*
28321073 AAGTTGTGTATTATGTAAGTTATT
1 AAGTTATGTATTATGTAAGTTATT
28321097 ATGTTATTAT
Statistics
Matches: 95, Mismatches: 9, Indels: 32
0.70 0.07 0.24
Matches are distributed among these distances:
25 16 0.17
27 5 0.05
30 48 0.51
32 1 0.01
35 1 0.01
38 1 0.01
39 5 0.05
40 1 0.01
41 17 0.18
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (30 bp):
AAGTTATGTATTATGTAAGTTATTTAAGGT
Found at i:28321247 original size:34 final size:34
Alignment explanation
Indices: 28321209--28321274 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
28321199 GTATAATGTT
28321209 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
1 AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
** *
28321243 AGTTATGTAAGTTGTGTATTATGTAAGTTATT
1 AGTTATCAAAGTTATGTATTATGTAAGTTATT
28321275 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (34 bp):
AGTTATCAAAGTTATGTATTATGTAAGTTATTTA
Found at i:28321287 original size:12 final size:12
Alignment explanation
Indices: 28321272--28321300 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
28321262 TATGTAAGTT
28321272 ATTATTTTTAAA
1 ATTATTTTTAAA
28321284 ATTATTTTTAAA
1 ATTATTTTTAAA
28321296 ATTAT
1 ATTAT
28321301 AAAATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTTTTAAA
Found at i:28321430 original size:17 final size:17
Alignment explanation
Indices: 28321408--28321686 Score: 110
Period size: 17 Copynumber: 16.5 Consensus size: 17
28321398 TTTAAGTCAT
* *
28321408 GTAAGTTATAAATTTTA
1 GTAAGTAATATATTTTA
*
28321425 GTAAGTAATATATTTAA
1 GTAAGTAATATATTTTA
28321442 GTAATGTAATATATTTTA
1 GTAA-GTAATATATTTTA
* ** *
28321460 GTAAGTAATGTAAGTAA
1 GTAAGTAATATATTTTA
28321477 TGTAA-TATATACTTAAATTTTA
1 -GTAAGTA-ATA--T--ATTTTA
* *
28321499 GTAAGTCATGTA--TT-
1 GTAAGTAATATATTTTA
28321513 -TAAGTAATATA--TT-
1 GTAAGTAATATATTTTA
28321526 -TAAG-AA-A-ATTTTA
1 GTAAGTAATATATTTTA
* *
28321539 GTAAGTAATGTATTTAA
1 GTAAGTAATATATTTTA
28321556 GTAA-TATACTATATTTTA
1 GTAAGTA-A-TATATTTTA
*
28321574 GTAAGTAATGTA----A
1 GTAAGTAATATATTTTA
*
28321587 GTAATGTAATATATACTTA
1 GTAA-GTAATATAT-TTTA
* *
28321606 -AAAAT-ATATATTTAATTAA
1 GTAAGTAATATA-TT--TT-A
* *
28321625 TGTAAGTTATAAATTTTA
1 -GTAAGTAATATATTTTA
*
28321643 GTAAGTAATATATTTAA
1 GTAAGTAATATATTTTA
28321660 GTAATGTAATATATTTTA
1 GTAA-GTAATATATTTTA
28321678 GTAAGTAAT
1 GTAAGTAAT
28321687 GTAAGTAATG
Statistics
Matches: 198, Mismatches: 32, Indels: 64
0.67 0.11 0.22
Matches are distributed among these distances:
10 1 0.01
11 1 0.01
12 4 0.02
13 20 0.10
14 11 0.06
15 4 0.02
16 7 0.04
17 68 0.34
18 55 0.28
19 7 0.04
20 1 0.01
21 11 0.06
22 8 0.04
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (17 bp):
GTAAGTAATATATTTTA
Found at i:28321439 original size:39 final size:38
Alignment explanation
Indices: 28321365--28321817 Score: 324
Period size: 35 Copynumber: 12.2 Consensus size: 38
28321355 TAAAATTTTA
*
28321365 AATAT-ATATATAAATTTTAAGTAATGTAATATATTTAAGT
1 AATATAAT-TATAAATTTT-AGTAA-GTAATGTATTTAAGT
* * *
28321405 CATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGT
1 AATATAA-TTATAAATTTTAGTAAGTAATGTATTTAAGT
* **
28321444 AATGTAA-TAT--ATTTTAGTAAGTAATGTAAGTAATGT
1 AATATAATTATAAATTTTAGTAAGTAATGTATTTAA-GT
* *
28321480 AATATATACT-TAAATTTTAGTAAGTCATGTATTTAAGT
1 AATATA-ATTATAAATTTTAGTAAGTAATGTATTTAAGT
* *
28321518 AATATATTTAAGAAAATTTTAGTAAGTAATGTATTTAAGT
1 AATATAATT-A-TAAATTTTAGTAAGTAATGTATTTAAGT
*
28321558 AATAT-ACTAT--ATTTTAGTAAGTAATG----TAAGT
1 AATATAATTATAAATTTTAGTAAGTAATGTATTTAAGT
* * * * * * *
28321589 AATGTAA-TATATA-CTTA-AAAAT-ATATATTTAATT
1 AATATAATTATAAATTTTAGTAAGTAATGTATTTAAGT
* *
28321623 AATGTA-AGTTATAAATTTTAGTAAGTAATATATTTAAGT
1 AA--TATAATTATAAATTTTAGTAAGTAATGTATTTAAGT
* **
28321662 AATGTAA-TAT--ATTTTAGTAAGTAATGTAAGTAATGT
1 AATATAATTATAAATTTTAGTAAGTAATGTATTTAA-GT
* *
28321698 AATATATACT-TAAATTTTAGTAAGTCATGTATTTAAGT
1 AATATA-ATTATAAATTTTAGTAAGTAATGTATTTAAGT
*
28321736 AATATATTTAAGTAAATTTTAGTAAGTAATGTATTTAAGT
1 AATATAATT-A-TAAATTTTAGTAAGTAATGTATTTAAGT
* * **
28321776 AATGT-ACTAT--ATTTTAGTAAGTAATGTAAGTAATGT
1 AATATAATTATAAATTTTAGTAAGTAATGTATTTAA-GT
28321812 AATATA
1 AATATA
28321818 TACTTAAAAA
Statistics
Matches: 331, Mismatches: 48, Indels: 71
0.74 0.11 0.16
Matches are distributed among these distances:
30 2 0.01
31 15 0.05
32 4 0.01
33 1 0.00
34 6 0.02
35 78 0.24
36 26 0.08
37 17 0.05
38 24 0.07
39 76 0.23
40 70 0.21
41 11 0.03
42 1 0.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (38 bp):
AATATAATTATAAATTTTAGTAAGTAATGTATTTAAGT
Found at i:28321525 original size:13 final size:13
Alignment explanation
Indices: 28321509--28321563 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
28321499 GTAAGTCATG
28321509 TATTTAAGTAATA
1 TATTTAAGTAATA
*
28321522 TATTTAAG-AAAA
1 TATTTAAGTAATA
* *
28321534 TTTTAGTAAGTAATG
1 TATT--TAAGTAATA
28321549 TATTTAAGTAATA
1 TATTTAAGTAATA
28321562 TA
1 TA
28321564 CTATATTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
12 6 0.18
13 18 0.55
14 4 0.12
15 5 0.15
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.44
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:28321553 original size:114 final size:114
Alignment explanation
Indices: 28321365--28321825 Score: 644
Period size: 114 Copynumber: 4.1 Consensus size: 114
28321355 TAAAATTTTA
* * * * *
28321365 AATATATA-TATAAATTTTAAGTAATGTAATATATTTAAGTCATGTAAGTT-A-TAAATTTTAGT
1 AATATATACT-TAAATTTT-AGTAA-GTCATGTATTTAAGTAATAT-ATTTAAGTAAATTTTAGT
28321427 AAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
62 AAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
*
28321480 AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGAAAATTTTAGTAAGT
1 AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTAAATTTTAGTAAGT
* * *
28321545 AATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAGTAATGT
66 AATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
* * * *
28321594 AATATATACTT-AA----A--AA-T-ATATATTTAATTAATGTAAGTT-A-TAAATTTTAGTAAG
1 AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT-ATTTAAGTAAATTTTAGTAAG
28321648 TAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
65 TAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
28321698 AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTAAATTTTAGTAAGT
1 AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTAAATTTTAGTAAGT
* *
28321763 AATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGT
66 AATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
28321812 AATATATACTTAAA
1 AATATATACTTAAA
28321826 AATATATATT
Statistics
Matches: 308, Mismatches: 23, Indels: 31
0.85 0.06 0.09
Matches are distributed among these distances:
104 71 0.23
105 17 0.06
106 4 0.01
107 2 0.01
109 2 0.01
111 2 0.01
112 7 0.02
113 34 0.11
114 152 0.49
115 16 0.05
116 1 0.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (114 bp):
AATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTAAATTTTAGTAAGT
AATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGT
Found at i:28321657 original size:104 final size:104
Alignment explanation
Indices: 28321531--28321860 Score: 491
Period size: 104 Copynumber: 3.1 Consensus size: 104
28321521 ATATTTAAGA
*
28321531 AAATTTTAGTAAGTAATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAGTAATGTAA
1 AAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTAA
28321596 TATATACTTAAAAATATATATTTAATTAATGTAAGTTAT
66 TATATACTTAAAAATATATATTTAATTAATGTAAGTTAT
* *
28321635 AAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTAA
1 AAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTAA
* * * *
28321700 TATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT-ATTTAAGT
66 TATATACTT-AA----A--AA-T-ATATATTTAATTAATGTAAGTT-A-T
28321749 AAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTAA
1 AAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTAA
28321814 TATATACTTAAAAATATATATTTAATTAATGTAAGTTAT
66 TATATACTTAAAAATATATATTTAATTAATGTAAGTTAT
28321853 AAATTTTA
1 AAATTTTA
28321861 AAAATATATA
Statistics
Matches: 201, Mismatches: 13, Indels: 24
0.84 0.05 0.10
Matches are distributed among these distances:
104 80 0.40
105 17 0.08
106 4 0.02
107 2 0.01
109 2 0.01
111 2 0.01
112 4 0.02
113 17 0.08
114 73 0.36
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (104 bp):
AAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTAA
TATATACTTAAAAATATATATTTAATTAATGTAAGTTAT
Found at i:28321771 original size:218 final size:218
Alignment explanation
Indices: 28321393--28321860 Score: 900
Period size: 218 Copynumber: 2.1 Consensus size: 218
28321383 AAGTAATGTA
* *
28321393 ATATATTTAAGTCATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTT
1 ATATATTTAATTAATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTT
28321458 TAGTAAGTAATGTAAGTAATGTAATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT
66 TAGTAAGTAATGTAAGTAATGTAATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT
28321523 ATTTAAGAAAATTTTAGTAAGTAATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAG
131 ATTTAAGAAAATTTTAGTAAGTAATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAG
28321588 TAATGTAATATATACTTAAAAAT
196 TAATGTAATATATACTTAAAAAT
28321611 ATATATTTAATTAATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTT
1 ATATATTTAATTAATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTT
28321676 TAGTAAGTAATGTAAGTAATGTAATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT
66 TAGTAAGTAATGTAAGTAATGTAATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT
* *
28321741 ATTTAAGTAAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAG
131 ATTTAAGAAAATTTTAGTAAGTAATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAG
28321806 TAATGTAATATATACTTAAAAAT
196 TAATGTAATATATACTTAAAAAT
28321829 ATATATTTAATTAATGTAAGTTATAAATTTTA
1 ATATATTTAATTAATGTAAGTTATAAATTTTA
28321861 AAAATATATA
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 246 1.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (218 bp):
ATATATTTAATTAATGTAAGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTT
TAGTAAGTAATGTAAGTAATGTAATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATAT
ATTTAAGAAAATTTTAGTAAGTAATGTATTTAAGTAATATACTATATTTTAGTAAGTAATGTAAG
TAATGTAATATATACTTAAAAAT
Found at i:28321779 original size:13 final size:13
Alignment explanation
Indices: 28321718--28321781 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
28321708 TAAATTTTAG
*
28321718 TAAGTCATGTATT
1 TAAGTAATGTATT
*
28321731 TAAGTAATATATT
1 TAAGTAATGTATT
28321744 TAAGTAAAT-T-TT
1 TAAGT-AATGTATT
28321756 AGTAAGTAATGTATT
1 --TAAGTAATGTATT
28321771 TAAGTAATGTA
1 TAAGTAATGTA
28321782 CTATATTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
12 2 0.05
13 31 0.70
14 9 0.20
15 2 0.05
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (13 bp):
TAAGTAATGTATT
Found at i:28321794 original size:18 final size:17
Alignment explanation
Indices: 28321751--28321800 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
28321741 ATTTAAGTAA
*
28321751 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATAT
* *
28321768 ATTTAAGTAATGTACTAT
1 ATTTTAGTAA-GTAATAT
28321786 ATTTTAGTAAGTAAT
1 ATTTTAGTAAGTAAT
28321801 GTAAGTAATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATAT
Found at i:28321849 original size:114 final size:114
Alignment explanation
Indices: 28321634--28321858 Score: 328
Period size: 114 Copynumber: 2.0 Consensus size: 114
28321624 ATGTAAGTTA
28321634 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTA
1 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTA
* * * * *
28321699 ATATATACTTAAATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAG
66 ATATATACTTAAAATATAGTAAGTAATGTATGTAAGTAATAAATTTAAG
* *
28321748 TAAATTTTAGTAAGTAATGTATTTAAGTAATGTACTATATTTTAGTAAGTAATGTAAGTAATGTA
1 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTA
** *
28321813 ATATATACTTAAAAATATA-TATTTAAT-TAATGTAAGTTATAAATTT
66 ATATATACTT-AAAATATAGTAAGTAATGT-ATGTAAGTAATAAATTT
28321859 TAAAAATATA
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
113 1 0.01
114 92 0.93
115 6 0.06
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (114 bp):
TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAATGTA
ATATATACTTAAAATATAGTAAGTAATGTATGTAAGTAATAAATTTAAG
Found at i:28323078 original size:16 final size:17
Alignment explanation
Indices: 28323043--28323084 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
28323033 TCTCCCTTTT
* *
28323043 TTTCTTTTTATTTCCTC
1 TTTCCTTTTATTTCCCC
28323060 TTTCCTTTT-TTTCCCC
1 TTTCCTTTTATTTCCCC
*
28323076 TTTCGTTTT
1 TTTCCTTTT
28323085 GTCTTTCTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTCCTTTTATTTCCCC
Found at i:28323763 original size:336 final size:335
Alignment explanation
Indices: 28323122--28323822 Score: 1129
Period size: 336 Copynumber: 2.1 Consensus size: 335
28323112 GTCTGAGATA
* *
28323122 TAGAGAAAATGAGAAGTTAAAACA-CGATGGACAGAAACGACGTCGTCCAGCCAATATGTTAAGA
1 TAGAGAAAATGATAAGTTAAAA-ATCG-TGTACAGAAACGACGTCGTCCAGCCAATATGTTAAGA
* **
28323186 CACTCTTGCGGCGTTTTCTACAAAAACGCCGTTATTGCTTATACATTTGCGACGTTTCCAAAAAA
64 CACTCTGGCGGCGTTTTCTACAAAAACGCCACTATTGCTTATACATTTGCGACGTTTCCAAAAAA
* *
28323251 GCGCCACTAAAAACTAAAGTTATAATCAGAAACAGTGCCGTTTAATTAATCTTTCATGCGCAGTT
129 GCGCCACTAAAAACTAAAGTTATAATCAGAAACAGCGCCGTTTAATTAATCTTTCATGCACAGTT
28323316 CTGCATTTTCCGCAAAAACGCCACTAAAAATAAATTTGCTTAAGTCAAACGGCAACGTTTAGCCA
194 CTGCATTTTCCGCAAAAACGCCACTAAAAATAAATTTGCTTAAGTCAAACGGCAACGTTTAGCCA
*
28323381 ATTTTCTAAGTCACATTTGCGGCGAATCATGTAAAACGCCACTAAAAATTAACAGAAACGACGTC
259 ATTTTCTAAGTCACATTTGCGGCGAATCATGTAAAACGCCACTAAAAATTAACAGAAACGACGCC
28323446 GTTCTATTAATC
324 GTTCTATTAATC
* **
28323458 TAGAGAAAATGATAAGTTAAAAATCGTGTACAGAAATGGTGTCGTCCAGCCAATATGTTAAGACA
1 TAGAGAAAATGATAAGTTAAAAATCGTGTACAGAAACGACGTCGTCCAGCCAATATGTTAAGACA
* * *
28323523 CTCTGGCGGCGTTTTCTGCAAAAACGCCACTATTGCTTATACATTTGCGGCGTTTTCGAAAAAA-
66 CTCTGGCGGCGTTTTCTACAAAAACGCCACTATTGCTTATACATTTGCGACG-TTTCCAAAAAAG
* * *
28323587 TGCCACTAAAAATTAAAGTTATAATCAGAAACGGCGCCGTTTAATTAATCTTTCATGCACAGTTC
130 CGCCACTAAAAACTAAAGTTATAATCAGAAACAGCGCCGTTTAATTAATCTTTCATGCACAGTTC
* * *
28323652 TGGCGTTTTCCAG-AAAAATGCCACTAAAAATAAATTTTCTTAAGTCAAACGGCAACGTTTAGCC
195 T-GCATTTTCC-GCAAAAACGCCACTAAAAATAAATTTGCTTAAGTCAAACGGCAACGTTTAGCC
* * *
28323716 AATTTTTTAAGTCACATTTGTGGCGAATCATGTAAAACGCCACTAAAAATTAACAGAAACGGCGC
258 AATTTTCTAAGTCACATTTGCGGCGAATCATGTAAAACGCCACTAAAAATTAACAGAAACGACGC
28323781 CGTTCTATTAATC
323 CGTTCTATTAATC
28323794 TAGAGAAAATGATAAGTTAAAAATCGTGT
1 TAGAGAAAATGATAAGTTAAAAATCGTGT
28323823 GTAATACCCC
Statistics
Matches: 338, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
335 144 0.43
336 193 0.57
337 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (335 bp):
TAGAGAAAATGATAAGTTAAAAATCGTGTACAGAAACGACGTCGTCCAGCCAATATGTTAAGACA
CTCTGGCGGCGTTTTCTACAAAAACGCCACTATTGCTTATACATTTGCGACGTTTCCAAAAAAGC
GCCACTAAAAACTAAAGTTATAATCAGAAACAGCGCCGTTTAATTAATCTTTCATGCACAGTTCT
GCATTTTCCGCAAAAACGCCACTAAAAATAAATTTGCTTAAGTCAAACGGCAACGTTTAGCCAAT
TTTCTAAGTCACATTTGCGGCGAATCATGTAAAACGCCACTAAAAATTAACAGAAACGACGCCGT
TCTATTAATC
Found at i:28328129 original size:22 final size:22
Alignment explanation
Indices: 28328103--28328163 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
28328093 CCGACCCCTG
*
28328103 AATCCCTAAACCTTAAATCCTT
1 AATCCCTAAACCTTAAATCCAT
* * *
28328125 AATCCATAATCCCTAAATCCAT
1 AATCCCTAAACCTTAAATCCAT
*
28328147 ATTCCCTAAACCTTAAA
1 AATCCCTAAACCTTAAA
28328164 ATATGAACTC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.39, C:0.31, G:0.00, T:0.30
Consensus pattern (22 bp):
AATCCCTAAACCTTAAATCCAT
Found at i:28328145 original size:15 final size:15
Alignment explanation
Indices: 28328103--28328156 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
28328093 CCGACCCCTG
*
28328103 AATCCCTAAA-CCTT
1 AATCCCTAAATCCAT
*
28328117 AAAT-CCTTAATCCAT
1 -AATCCCTAAATCCAT
28328132 AATCCCTAAATCCAT
1 AATCCCTAAATCCAT
*
28328147 ATTCCCTAAA
1 AATCCCTAAA
28328157 CCTTAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.24
15 25 0.76
ACGTcount: A:0.39, C:0.31, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAAATCCAT
Found at i:28328422 original size:15 final size:14
Alignment explanation
Indices: 28328400--28328433 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
28328390 TCCCAACCCT
28328400 TAAACCATAATCCC
1 TAAACCATAATCCC
*
28328414 TAAATCCATAATCTC
1 TAAA-CCATAATCCC
28328429 TAAAC
1 TAAAC
28328434 TTTTAACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:28328610 original size:41 final size:41
Alignment explanation
Indices: 28328547--28328743 Score: 265
Period size: 41 Copynumber: 4.8 Consensus size: 41
28328537 TTTTATTATT
*
28328547 ATTAGCGGCG-TTTTTGAAAAAAACGCCGCTAAAGGTCCGAGC
1 ATTAGCGGCGCTTTTT--CAAAAACGCCGCTAAAGGTCCGAGC
* *
28328589 ATTAGTGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
28328630 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGG-CTCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTC-CGAGC
* *
28328671 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA-GTATCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGT-CCGAGC
** *
28328712 ATTAGCGGAACTTTTTAAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
28328744 TGCCCCCAAA
Statistics
Matches: 141, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
40 2 0.01
41 125 0.89
42 9 0.06
43 5 0.04
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGTCCGAGC
Found at i:28328844 original size:39 final size:39
Alignment explanation
Indices: 28328784--28328878 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 39
28328774 GGGCTTAGGC
28328784 TTTTT-GCGGCGCTTTTTAAAAAACGCCGCTAATGCAT-A
1 TTTTTAGCGGCG-TTTTTAAAAAACGCCGCTAATGCATGA
* *
28328822 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTT-AAAAAACGCCGCTAATGCATGA
* *
28328862 TTTTAAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
28328879 TATCCAAACG
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
38 10 0.20
39 24 0.48
40 16 0.32
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTAAAAAACGCCGCTAATGCATGA
Found at i:28348586 original size:15 final size:15
Alignment explanation
Indices: 28348566--28348596 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
28348556 TGGTAAAGTA
*
28348566 ACGATACTTTGGTCC
1 ACGATACCTTGGTCC
28348581 ACGATACCTTGGTCC
1 ACGATACCTTGGTCC
28348596 A
1 A
28348597 GTTTGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (15 bp):
ACGATACCTTGGTCC
Found at i:28353072 original size:12 final size:12
Alignment explanation
Indices: 28353055--28353081 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
28353045 CCTTCTTCTC
28353055 CCCTTTCCCCTT
1 CCCTTTCCCCTT
28353067 CCCTTTCCCCTT
1 CCCTTTCCCCTT
28353079 CCC
1 CCC
28353082 CTTGGGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (12 bp):
CCCTTTCCCCTT
Found at i:28353203 original size:25 final size:27
Alignment explanation
Indices: 28353143--28353204 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
28353133 CCAGGTAAGG
*
28353143 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
28353171 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
28353194 CTTCTCTTCTT
1 CTTCTCTTCTT
28353205 AGCATATTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 21 0.70
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.35, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:28353727 original size:16 final size:13
Alignment explanation
Indices: 28353697--28353722 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28353687 TCAATGAACC
28353697 CTTAATTTTTTTG
1 CTTAATTTTTTTG
28353710 CTTAATTTTTTTG
1 CTTAATTTTTTTG
28353723 GTGCTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTAATTTTTTTG
Found at i:28357132 original size:21 final size:21
Alignment explanation
Indices: 28357106--28357158 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
28357096 CGCTGTTTCT
*
28357106 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
28357127 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
28357148 AATCTCACCGC
1 AATCTCACCGC
28357159 CACCACTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:28364576 original size:18 final size:18
Alignment explanation
Indices: 28364553--28364599 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
28364543 TTTTTATGTG
*
28364553 TGTTTATTTTTGTTTTTA
1 TGTTTATTTTTGTGTTTA
*
28364571 TGTTTATTTGTGTGTTTA
1 TGTTTATTTTTGTGTTTA
28364589 T-TTTAGTTTTT
1 TGTTTA-TTTTT
28364600 ATACATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.11, C:0.00, G:0.15, T:0.74
Consensus pattern (18 bp):
TGTTTATTTTTGTGTTTA
Found at i:28366150 original size:6 final size:6
Alignment explanation
Indices: 28366139--28366163 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
28366129 ATATTTTAGC
28366139 TTAGTT TTAGTT TTAGTT TTAGTT T
1 TTAGTT TTAGTT TTAGTT TTAGTT T
28366164 CCTTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (6 bp):
TTAGTT
Found at i:28368021 original size:23 final size:22
Alignment explanation
Indices: 28367978--28368021 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
28367968 TTCTAAGTCG
28367978 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
28368001 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
28368022 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:28368130 original size:45 final size:45
Alignment explanation
Indices: 28368066--28368159 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
28368056 AACAAATACT
* * * *
28368066 CGGTGGATTCAGCATATAGCAACCATCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
28368111 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
28368156 CGGT
1 CGGT
28368160 TCATATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:28368241 original size:51 final size:50
Alignment explanation
Indices: 28368180--28368349 Score: 209
Period size: 51 Copynumber: 3.4 Consensus size: 50
28368170 ACCTACAAAC
*
28368180 AGTACTACACATGTGACCATTACCATCC-GATACACGTAGTAGCCTGCACAT
1 AGTACTACACACGTGACCA-TACCATCCAG-TACACGTAGTAGCCTGCACAT
* * * * *
28368231 AGTACTACACACGTGATCAAAACTATCCAGTACGCATAGTAGCCTGCACAT
1 AGTACTACACACGTGA-CCATACCATCCAGTACACGTAGTAGCCTGCACAT
* * *
28368282 AGTACTACACATGCGACC-TATCATTCCAGTACACGTAGTAGCCTGCACAT
1 AGTACTACACACGTGACCATACCA-TCCAGTACACGTAGTAGCCTGCACAT
28368332 AGTACTACACACGTGACC
1 AGTACTACACACGTGACC
28368350 GTCACTTTCA
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.02
50 41 0.41
51 54 0.54
52 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (50 bp):
AGTACTACACACGTGACCATACCATCCAGTACACGTAGTAGCCTGCACAT
Found at i:28369652 original size:22 final size:22
Alignment explanation
Indices: 28369627--28369674 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
28369617 TGTTAAATGC
28369627 TTTTGGTTTCATGTTATTTAAG
1 TTTTGGTTTCATGTTATTTAAG
28369649 TTTTGGTTTCATGTTATTTAAG
1 TTTTGGTTTCATGTTATTTAAG
28369671 TTTT
1 TTTT
28369675 CTTACATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.17, C:0.04, G:0.17, T:0.62
Consensus pattern (22 bp):
TTTTGGTTTCATGTTATTTAAG
Found at i:28369763 original size:10 final size:11
Alignment explanation
Indices: 28369742--28369770 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
28369732 TGTTTCCTAT
28369742 TTTTATGTTTA
1 TTTTATGTTTA
28369753 TTTTA-GTTTA
1 TTTTATGTTTA
28369763 TTTTATGT
1 TTTTATGT
28369771 CAAATATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (11 bp):
TTTTATGTTTA
Found at i:28376002 original size:21 final size:20
Alignment explanation
Indices: 28375968--28376007 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
28375958 GACTTTCAAT
* *
28375968 TAAGTTTTATTTTAGTTTAA
1 TAAGTTTCATTTTAATTTAA
28375988 TAAGTTTGCATTTTAATTTA
1 TAAGTTT-CATTTTAATTTA
28376008 TTCCATCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.30, C:0.03, G:0.10, T:0.57
Consensus pattern (20 bp):
TAAGTTTCATTTTAATTTAA
Found at i:28377813 original size:11 final size:11
Alignment explanation
Indices: 28377797--28377827 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
28377787 TTTTGTCTCA
28377797 CGCTACAGTGT
1 CGCTACAGTGT
28377808 CGCTACAGTGT
1 CGCTACAGTGT
28377819 CGCTACAGT
1 CGCTACAGT
28377828 ATCTAATCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (11 bp):
CGCTACAGTGT
Found at i:28396517 original size:21 final size:22
Alignment explanation
Indices: 28396479--28396523 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
28396469 ATTATGAATA
*
28396479 TTAATTCATAATATAATTAATT
1 TTAATTCATAATACAATTAATT
* *
28396501 TTAATT-ATAATCCAATTTATT
1 TTAATTCATAATACAATTAATT
28396522 TT
1 TT
28396524 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (22 bp):
TTAATTCATAATACAATTAATT
Found at i:28397899 original size:317 final size:317
Alignment explanation
Indices: 28397324--28397935 Score: 1197
Period size: 317 Copynumber: 1.9 Consensus size: 317
28397314 ATCATGATTA
*
28397324 AGTTATTCTTGCATTATAATTGTACGGTAACTAATGAATTAATTATTTAATCATGTTGAAATTGC
1 AGTTATTCTTGCATTATAATTGTAAGGTAACTAATGAATTAATTATTTAATCATGTTGAAATTGC
28397389 AATTAATTGGCACAATACTTAATCAGTGTATGTTTAATCTTCTAAGGTAGCTGAGGGTTAAATTA
66 AATTAATTGGCACAATACTTAATCAGTGTATGTTTAATCTTCTAAGGTAGCTGAGGGTTAAATTA
28397454 CCGACGGTATAGATGGTACATTAGCCTTGCATAACTTGTAAGATTATTGTGATTAAACTATTTTA
131 CCGACGGTATAGATGGTACATTAGCCTTGCATAACTTGTAAGATTATTGTGATTAAACTATTTTA
* *
28397519 ATGTAGGAATACATTGTTATCTCACTTAATCTTTTATGTGCTTATGAAGATTGATTAATTGTTTG
196 ATGTAGGAATACATTGTTATCTCACTTAATATTTTATGTGATTATGAAGATTGATTAATTGTTTG
28397584 AATTGTCATTGGAAAATGTTCAAGAGATAAGTTAACTAATGAATTAAGTTATTCATT
261 AATTGTCATTGGAAAATGTTCAAGAGATAAGTTAACTAATGAATTAAGTTATTCATT
28397641 AGTTATTCTTGCATTATAATTGTAAGGTAACTAATGAATTAATTATTTAATCATGTTGAAATTGC
1 AGTTATTCTTGCATTATAATTGTAAGGTAACTAATGAATTAATTATTTAATCATGTTGAAATTGC
28397706 AATTAATTGGCACAATACTTAATCAGTGTATGTTTAATCTTCTAAGGTAGCTGAGGGTTAAATTA
66 AATTAATTGGCACAATACTTAATCAGTGTATGTTTAATCTTCTAAGGTAGCTGAGGGTTAAATTA
28397771 CCGACGGTATAGATGGTACATTAGCCTTGCATAACTTGTAAGATTATTGTGATTAAACTATTTTA
131 CCGACGGTATAGATGGTACATTAGCCTTGCATAACTTGTAAGATTATTGTGATTAAACTATTTTA
28397836 ATGTAGGAATACATTGTTATCTCACTTAATATTTTATGTGATTATGAAGATTGATTAATTGTTTG
196 ATGTAGGAATACATTGTTATCTCACTTAATATTTTATGTGATTATGAAGATTGATTAATTGTTTG
28397901 AATTGTCATTGGAAAATGTTCAAGAGATAAGTTAA
261 AATTGTCATTGGAAAATGTTCAAGAGATAAGTTAA
28397936 TTTAATAAGT
Statistics
Matches: 292, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
317 292 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (317 bp):
AGTTATTCTTGCATTATAATTGTAAGGTAACTAATGAATTAATTATTTAATCATGTTGAAATTGC
AATTAATTGGCACAATACTTAATCAGTGTATGTTTAATCTTCTAAGGTAGCTGAGGGTTAAATTA
CCGACGGTATAGATGGTACATTAGCCTTGCATAACTTGTAAGATTATTGTGATTAAACTATTTTA
ATGTAGGAATACATTGTTATCTCACTTAATATTTTATGTGATTATGAAGATTGATTAATTGTTTG
AATTGTCATTGGAAAATGTTCAAGAGATAAGTTAACTAATGAATTAAGTTATTCATT
Found at i:28398977 original size:25 final size:25
Alignment explanation
Indices: 28398943--28398998 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
28398933 AAGGCCACTA
28398943 CACCACCGTCCCTGTCGCGTCGTTG
1 CACCACCGTCCCTGTCGCGTCGTTG
28398968 CACCACCGTCCCTGTCGCGTCGTTG
1 CACCACCGTCCCTGTCGCGTCGTTG
28398993 CACCAC
1 CACCAC
28398999 TGCTGCATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.11, C:0.46, G:0.21, T:0.21
Consensus pattern (25 bp):
CACCACCGTCCCTGTCGCGTCGTTG
Found at i:28399932 original size:35 final size:36
Alignment explanation
Indices: 28399893--28399986 Score: 145
Period size: 35 Copynumber: 2.6 Consensus size: 36
28399883 ATATTTTATT
* *
28399893 ATTTTTATTCGCATGTTAAGCATGCTATTA-TTCTG
1 ATTTTGATTCGCATGTTAAGCATGCCATTATTTCTG
*
28399928 ATTTTGACTCGCATGTTAAGCATGCCATTATTTCTG
1 ATTTTGATTCGCATGTTAAGCATGCCATTATTTCTG
*
28399964 ATTCTGATTCGCATGTTAAGCAT
1 ATTTTGATTCGCATGTTAAGCAT
28399987 TCCACTGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
35 27 0.51
36 26 0.49
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (36 bp):
ATTTTGATTCGCATGTTAAGCATGCCATTATTTCTG
Found at i:28399976 original size:36 final size:35
Alignment explanation
Indices: 28399899--28399986 Score: 140
Period size: 36 Copynumber: 2.5 Consensus size: 35
28399889 TATTATTTTT
* *
28399899 ATTCGCATGTTAAGCATGCTATTATTCTGATTTTG
1 ATTCGCATGTTAAGCATGCCATTATTCTGATTCTG
*
28399934 ACTCGCATGTTAAGCATGCCATTATTTCTGATTCTG
1 ATTCGCATGTTAAGCATGCCATTA-TTCTGATTCTG
28399970 ATTCGCATGTTAAGCAT
1 ATTCGCATGTTAAGCAT
28399987 TCCACTGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
35 22 0.46
36 26 0.54
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (35 bp):
ATTCGCATGTTAAGCATGCCATTATTCTGATTCTG
Found at i:28403099 original size:22 final size:21
Alignment explanation
Indices: 28403071--28403112 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
28403061 ACCGTTAGTA
*
28403071 TAGTTTACTGAATAATTATTTG
1 TAGTTTA-GGAATAATTATTTG
*
28403093 TAGTTTAGGAGTAATTATTT
1 TAGTTTAGGAATAATTATTT
28403113 TAGATAGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (21 bp):
TAGTTTAGGAATAATTATTTG
Found at i:28408888 original size:20 final size:20
Alignment explanation
Indices: 28408858--28408909 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
28408848 TATAGTACAA
28408858 ATATAATAAATTTATATATTT
1 ATAT-ATAAATTTATATATTT
*
28408879 ATATATAAATATATATATTT
1 ATATATAAATTTATATATTT
28408899 AT-TATAAATTT
1 ATATATAAATTT
28408910 TAGTTAACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.28
20 17 0.59
21 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATATAAATTTATATATTT
Found at i:28419750 original size:26 final size:26
Alignment explanation
Indices: 28419721--28419772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
28419711 ATATAATTTC
28419721 CAAATCATGTATC-TATATATCATGTA
1 CAAATCAT-TATCATATATATCATGTA
* *
28419747 CAAATCATTTTCATATATCTCATGTA
1 CAAATCATTATCATATATATCATGTA
28419773 AATACCTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (26 bp):
CAAATCATTATCATATATATCATGTA
Found at i:28422615 original size:137 final size:137
Alignment explanation
Indices: 28422367--28422980 Score: 592
Period size: 137 Copynumber: 4.6 Consensus size: 137
28422357 AGGTTTGTGG
* * * **
28422367 ATTTAAAATCGTAGCCTCCAAAGCAACTAGTGGACCTACGCTCCCAGCTAACATTATAAGAGCTT
1 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
* *
28422432 GTAGAGTTAAGCTCGTAGCTTTGACACAGCTA--GAAGGCCTACGCTCCCAACTGATGTCATAAA
66 GTAGAGTTAAGCTCGTAGCTCTGACACAGCTAGCGAA--CCTACGCTCCCAGCTGATGTCATAAA
*
28422495 GGTTTGACG
129 GGTTTGACA
* ** * * ** * *
28422504 ATTTAATATTGTAGCTTCTAAAGTAGCTAGCAGACCTACGCTCCCAAATAACATTGTAAGAGCTC
1 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
* * *
28422569 GTAGAGTTAAGCTCGTAGCTCTGACACAACTAGCGAACCTATGCTCCCAGCTGATGTCATAAAAG
66 GTAGAGTTAAGCTCGTAGCTCTGACACAGCTAGCGAACCTACGCTCCCAGCTGATGTCATAAAGG
28422634 TTTGACA
131 TTTGACA
* * *
28422641 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCGGACCTACGTTCCCAGCTGACATTATAAGAGCTT
1 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
* * ** * * * *
28422706 GCAAAGTTAAGCTCACAGCTCCGACACAGCTAGCGGACCTACGCTCCTAGCTGATGTCAGAAAGG
66 GTAGAGTTAAGCTCGTAGCTCTGACACAGCTAGCGAACCTACGCTCCCAGCTGATGTCATAAAGG
28422771 TTTGACA
131 TTTGACA
** * * * * * * * * *
28422778 ATTTAAGTTCGTAGCCTCCAAAGCAGTTAGTAAACCTATGCTACCGGGT-ACATTATAAGAGCTT
1 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
* * * * *
28422842 GTAGAGTTAA------A-CT-TG-CAGC-TCTA--GAACCTACCCTTCGAGCTGATGTCATAAAT
66 GTAGAGTTAAGCTCGTAGCTCTGACA-CAGCTAGCGAACCTACGCTCCCAGCTGATGTCATAAAG
**
28422895 GTTTGATG
130 GTTTGACA
* * * * * *
28422903 ATTTAAGATCACAGCCTCCAAAGCAGCTAGCGGACCTACGTTCCCAGCTGACATTATAAGAGCTT
1 ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
*
28422968 GTAGAATTAAGCT
66 GTAGAGTTAAGCT
28422981 TGCAAATCCA
Statistics
Matches: 391, Mismatches: 79, Indels: 22
0.79 0.16 0.04
Matches are distributed among these distances:
125 67 0.17
126 24 0.06
127 5 0.01
128 2 0.01
129 2 0.01
130 1 0.00
136 23 0.06
137 264 0.68
139 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (137 bp):
ATTTAAAATCATAGCCTCCAAAGTAGCTAGCAGACCTACGCTCCCAGCTAACATTATAAGAGCTT
GTAGAGTTAAGCTCGTAGCTCTGACACAGCTAGCGAACCTACGCTCCCAGCTGATGTCATAAAGG
TTTGACA
Found at i:28422784 original size:68 final size:67
Alignment explanation
Indices: 28422575--28422784 Score: 181
Period size: 68 Copynumber: 3.1 Consensus size: 67
28422565 GCTCGTAGAG
* * * * * *
28422575 TTAAGCTCGTAGCTCTGACACAACTAGCGAACCTATGCTCCCAGCTGATGTCATAAAAGTTTGAC
1 TTAAGCTCATAGCTCCGACACAGCTAGCGGACCTACGCTCCCAGCTGATGTCA-AAAGGTTTGAC
28422640 AAT
65 AAT
** * * * ** * * *
28422643 TTAAAATCATAGCCTCC-AAAGTAGCTAGCGGACCTACGTTCCCAGCTGACATTATAAGAGCTTG
1 TTAAGCTCATAG-CTCCGACA-CAGCTAGCGGACCTACGCTCCCAGCTGATGTCAAAAG-GTTTG
*
28422707 -CAAAG
63 AC-AAT
* *
28422712 TTAAGCTCACAGCTCCGACACAGCTAGCGGACCTACGCTCCTAGCTGATGTCAGAAAGGTTTGAC
1 TTAAGCTCATAGCTCCGACACAGCTAGCGGACCTACGCTCCCAGCTGATGTCA-AAAGGTTTGAC
28422777 AAT
65 AAT
28422780 TTAAG
1 TTAAG
28422785 TTCGTAGCCT
Statistics
Matches: 105, Mismatches: 30, Indels: 14
0.70 0.20 0.09
Matches are distributed among these distances:
68 56 0.53
69 49 0.47
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (67 bp):
TTAAGCTCATAGCTCCGACACAGCTAGCGGACCTACGCTCCCAGCTGATGTCAAAAGGTTTGACA
AT
Found at i:28438474 original size:22 final size:22
Alignment explanation
Indices: 28438447--28438504 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
28438437 CAAAATGTGC
28438447 ATGTCTTGAGACAATTTACCAT
1 ATGTCTTGAGACAATTTACCAT
** *
28438469 ATGTCTCAAGACAATTTATCAT
1 ATGTCTTGAGACAATTTACCAT
**
28438491 ACATCTTGAGACAA
1 ATGTCTTGAGACAA
28438505 GGCTCTCCTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (22 bp):
ATGTCTTGAGACAATTTACCAT
Found at i:28438971 original size:5 final size:5
Alignment explanation
Indices: 28438945--28439047 Score: 136
Period size: 5 Copynumber: 20.4 Consensus size: 5
28438935 TGATTTTAAA
*
28438945 ATAAT ACAAT ATAAAT ACTAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT AT-AAT A-TAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
28438997 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA- ATTAT ATTAT ATTAT ATTAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
28439046 AT
1 AT
28439048 GTGTCTAAGC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
4 3 0.03
5 80 0.87
6 8 0.09
7 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:28439432 original size:112 final size:110
Alignment explanation
Indices: 28439282--28439505 Score: 317
Period size: 112 Copynumber: 2.0 Consensus size: 110
28439272 TTATAATATA
* * * * *
28439282 TTAATTTTAAATATTGGTAAAGAAAATGTTGAAGATAGAATTTCAAAAGCAAAGGTTTAATCAAA
1 TTAATTTAAAATACTGATAAAGAAAATCTTGAAGATAGAATTTCAAAAGCAAACGTTTAATCAAA
*
28439347 ATTAAACCGA-GAGAAAAAAAATTAAGTATTAATTTTAAATATTATTG
66 ATTAAACC-ATGAG-AAAAAAA-TAAGTACTAATTTTAAATATTATTG
*
28439394 TTAATTTAAAATACTGATAAAGCAAATCTTGGAA-ATAGAATTTCAAAAGCAAACGTTTAATCAA
1 TTAATTTAAAATACTGATAAAGAAAATCTT-GAAGATAGAATTTCAAAAGCAAACGTTTAATCAA
* *
28439458 AATTAAACCATGAGAAAAGAATAAGTACTAATTTTAAATATTGTTG
65 AATTAAACCATGAGAAAAAAATAAGTACTAATTTTAAATATTATTG
28439504 TT
1 TT
28439506 TTAAAATTTC
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
110 25 0.25
111 7 0.07
112 66 0.65
113 3 0.03
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (110 bp):
TTAATTTAAAATACTGATAAAGAAAATCTTGAAGATAGAATTTCAAAAGCAAACGTTTAATCAAA
ATTAAACCATGAGAAAAAAATAAGTACTAATTTTAAATATTATTG
Found at i:28439659 original size:14 final size:13
Alignment explanation
Indices: 28439632--28439677 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
28439622 TTAAAAAATC
* *
28439632 TATTTCATAAATT
1 TATTTAATATATT
28439645 TGATTTAATATATT
1 T-ATTTAATATATT
28439659 TATCTTAATATATT
1 TAT-TTAATATATT
28439673 TATTT
1 TATTT
28439678 TTTTTGGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 5 0.17
14 24 0.83
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (13 bp):
TATTTAATATATT
Found at i:28448897 original size:24 final size:24
Alignment explanation
Indices: 28448847--28448898 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
28448837 TAATCAAGTC
* **
28448847 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATACT
28448871 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
28448895 AAAT
1 AAAT
28448899 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:28461458 original size:13 final size:13
Alignment explanation
Indices: 28461436--28461469 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
28461426 GGGCCCATAG
*
28461436 GCCCACGTTGCAT
1 GCCCATGTTGCAT
28461449 GCCCATGTTGCAT
1 GCCCATGTTGCAT
28461462 GCCCATGT
1 GCCCATGT
28461470 AGGCCCACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.24, T:0.26
Consensus pattern (13 bp):
GCCCATGTTGCAT
Found at i:28464910 original size:20 final size:20
Alignment explanation
Indices: 28464885--28464922 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
28464875 AGAGTTAGTG
28464885 TTTAAATATTTATTTAATTT
1 TTTAAATATTTATTTAATTT
28464905 TTTAAATATTTATTTAAT
1 TTTAAATATTTATTTAAT
28464923 GTTTACGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAAATATTTATTTAATTT
Found at i:28479780 original size:44 final size:45
Alignment explanation
Indices: 28479719--28480445 Score: 566
Period size: 44 Copynumber: 16.5 Consensus size: 45
28479709 GCAGGCTAAA
* *
28479719 AAGA-AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * * *
28479762 AAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCA
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * * *
28479806 AAGAT-GCAGATCTTGTCTTGC-CATACTGGTGGCGAAGTAAATCG
1 AAGATAGCAGATCTTGTCTT-CATATATTGGTCGTGAAGTAGATCG
* * * * * *
28479850 AAGAAAGCTGATCCTGTCTTCATGTAGTGG-CATGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * * * * *
28479894 AAGATAACATATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
** * * * *
28479939 AAGATA-CAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* ** * *
28479983 AAGAAAATAGATCTTGCCTTCATGTATTGG-CGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * * * ** *
28480027 AAGATAACAGATCCTGTTTTCCTATATTGGTAGCAAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
** * * * *
28480072 AAGATA-CAGATCTTGTCTTCCCATACTGATGGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* *
28480116 AAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
** * * * * *
28480160 AAGATAATAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* ** * * *
28480205 AAGATA-TAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * *
28480249 AAGAAAGCAGATCTTGTCTTCATGTGTTAG-CGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * * * *
28480293 AAGGTAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCA
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* ** *
28480337 AAGAT-GTAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * * *
28480381 AAGAAAGCAGATCTTGTCTTCATGTATTGG-CATGAAGTGGATCG
1 AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
* * *
28480425 AAAATAACAGATTTTGTCTTC
1 AAGATAGCAGATCTTGTCTTC
28480446 TTAAATTTGC
Statistics
Matches: 539, Mismatches: 130, Indels: 29
0.77 0.19 0.04
Matches are distributed among these distances:
43 48 0.09
44 353 0.65
45 138 0.26
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
AAGATAGCAGATCTTGTCTTCATATATTGGTCGTGAAGTAGATCG
Found at i:28479984 original size:133 final size:133
Alignment explanation
Indices: 28479722--28480445 Score: 1128
Period size: 133 Copynumber: 5.5 Consensus size: 133
28479712 GGCTAAAAAG
* *
28479722 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* * * *
28479787 ATTGGTAG-GAAGTGGATCAAAGATGCAGATCTTGTCTTGCCATACTGGTGGCGAAGTAAATCGA
66 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
28479851 AGA
131 AGA
* * * * *
28479854 AAGCTGATCCTGTCTTCATGTAGTGGCATGAAGTAGATCGAAGATAACATATCCTGTCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
*
28479919 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGA
66 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
28479984 AGA
131 AGA
** * *
28479987 AAATAGATCTTGCCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTTTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* *
28480052 ATTGGTAGCAAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGATGGCGAAGTAGATCGA
66 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
28480117 AGA
131 AGA
*
28480120 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAATAGATCCTGTCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
*
28480185 ATTGGTAGCGAAGTGGATCGAAGATATAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
28480250 AGA
131 AGA
* * * *
28480253 AAGCAGATCTTGTCTTCATGTGTTAGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTAT
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
* ** * *
28480318 ATTGGTAG-GAAGTGGATCAAAGATGTAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGA
66 ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
28480382 AGA
131 AGA
* * * **
28480385 AAGCAGATCTTGTCTTCATGTATTGGCATGAAGTGGATCGAAAATAACAGATTTTGTCTTC
1 AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTC
28480446 TTAAATTTGC
Statistics
Matches: 541, Mismatches: 50, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
132 173 0.32
133 368 0.68
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (133 bp):
AAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
ATTGGTAGCGAAGTGGATCGAAGATACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
AGA
Found at i:28480534 original size:44 final size:44
Alignment explanation
Indices: 28480479--28480595 Score: 198
Period size: 44 Copynumber: 2.7 Consensus size: 44
28480469 GAAGTGGGCG
* *
28480479 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAGGCCAAT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT
* *
28480523 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT
28480567 AATCTTATCTCCCTAAAGTTGCAGTGGAG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAG
28480596 TAGACACAAG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 68 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT
Found at i:28482754 original size:15 final size:15
Alignment explanation
Indices: 28482734--28482764 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
28482724 ATATTATTTC
28482734 TATGCCATTATTGTA
1 TATGCCATTATTGTA
*
28482749 TATGCCATTGTTGTA
1 TATGCCATTATTGTA
28482764 T
1 T
28482765 TTGTGACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.48
Consensus pattern (15 bp):
TATGCCATTATTGTA
Found at i:28485054 original size:41 final size:42
Alignment explanation
Indices: 28484969--28485054 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 42
28484959 TGAATCCATG
*
28484969 AAATGGTTCAAAAGGAAGTTATTCAAAAAGGATAACAAATGA
1 AAATGGTTCAAAAGGAAGTTATCCAAAAAGGATAACAAATGA
* * *
28485011 AAAT-GTTGAAAAGGATGTTATCCGAAAAGGATAACAAATGA
1 AAATGGTTCAAAAGGAAGTTATCCAAAAAGGATAACAAATGA
28485052 AAA
1 AAA
28485055 GGATGTGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 36 0.90
42 4 0.10
ACGTcount: A:0.52, C:0.07, G:0.20, T:0.21
Consensus pattern (42 bp):
AAATGGTTCAAAAGGAAGTTATCCAAAAAGGATAACAAATGA
Found at i:28503984 original size:141 final size:141
Alignment explanation
Indices: 28503839--28504125 Score: 422
Period size: 140 Copynumber: 2.0 Consensus size: 141
28503829 AAACAAAAAA
*
28503839 ATATAAAGAGAAAAAAGGGTACAAAATAT-ATACATGTACATATATA-A-AAA-AAATTAATAAT
1 ATATAAAGA-AAAAAAGAGTACAAAA-ATGATA-AT-TACATATATATATAAACAAA-TAATAAT
28503900 AATTGCATATATTAAAATTAATTAATTTAGAAAAATATATACAT-AAAAAATTATGAAGAATAAT
61 AATTGCATATATTAAAATTAATTAATTTAGAAAAATATATACATAAAAAAATTATGAAGAATAAT
28503964 ATAAGAAAACATACGT
126 ATAAGAAAACATACGT
* * * * * * *
28503980 ATATACATATATATAGATTATAAAAATGATAATTACATATATATATAAACAAATAATAATAATTG
1 ATATAAAGAAAAAAAGAGTACAAAAATGATAATTACATATATATATAAACAAATAATAATAATTG
28504045 CATATATTAAAATTAATTAATTTAGAAAAATATATACATAAAAAAATTATGAAGAATAATATAAG
66 CATATATTAAAATTAATTAATTTAGAAAAATATATACATAAAAAAATTATGAAGAATAATATAAG
28504110 AAAACATACGT
131 AAAACATACGT
28504121 ATATA
1 ATATA
28504126 CATATTTATC
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
138 10 0.08
139 5 0.04
140 67 0.50
141 51 0.38
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (141 bp):
ATATAAAGAAAAAAAGAGTACAAAAATGATAATTACATATATATATAAACAAATAATAATAATTG
CATATATTAAAATTAATTAATTTAGAAAAATATATACATAAAAAAATTATGAAGAATAATATAAG
AAAACATACGT
Found at i:28504038 original size:140 final size:139
Alignment explanation
Indices: 28503875--28504130 Score: 471
Period size: 140 Copynumber: 1.8 Consensus size: 139
28503865 TATATACATG
28503875 TACATATATAAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATAT
1 TACATATATAAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATAT
28503940 ACAT-AAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAGATTATAAA
66 ACATAAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAGATTATAAA
28504004 AATGATAAT
131 AATGATAAT
28504013 TACATATATATATAAACAAA-TAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATA
1 TACATATATA-A-AAA-AAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATA
28504077 TATACATAAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATAT
63 TATACATAAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATAT
28504131 TTATCAAAGT
Statistics
Matches: 114, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
138 10 0.09
139 1 0.01
140 54 0.47
141 49 0.43
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (139 bp):
TACATATATAAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATAT
ACATAAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAGATTATAAA
AATGATAAT
Found at i:28504160 original size:140 final size:141
Alignment explanation
Indices: 28503878--28504165 Score: 460
Period size: 140 Copynumber: 2.1 Consensus size: 141
28503868 ATACATGTAC
28503878 ATATATA-AAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATATAC
1 ATATATATAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATATAC
* *
28503942 ATAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAGATTATAAAAAT
66 ATAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAAAGTATAAAAAT
* *
28504007 GATAATTACAT
131 GATAATAAAAT
*
28504018 ATATATATAAACAAA-TAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATATAC
1 ATATATATAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATATAC
*
28504082 ATAAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATTTATCAAAGTA-AAAA
66 AT-AAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATAT-AAAGTATAAAA
28504146 AT-AT-ATAAAAAT
129 ATGATAAT-AAAAT
28504158 ATATATAT
1 ATATATAT
28504166 GCATAAAAAA
Statistics
Matches: 138, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
139 2 0.01
140 71 0.51
141 61 0.44
142 4 0.03
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (141 bp):
ATATATATAAAAAAATTAATAATAATTGCATATATTAAAATTAATTAATTTAGAAAAATATATAC
ATAAAAAATTATGAAGAATAATATAAGAAAACATACGTATATACATATATATAAAGTATAAAAAT
GATAATAAAAT
Found at i:28504207 original size:17 final size:17
Alignment explanation
Indices: 28504187--28504230 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
28504177 TTAGGAAATA
28504187 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
28504204 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
28504221 -ATATGTATAT
1 AAAATGTATAT
28504231 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:28504724 original size:22 final size:21
Alignment explanation
Indices: 28504688--28504767 Score: 56
Period size: 22 Copynumber: 3.7 Consensus size: 21
28504678 TAAAAGGTAT
* * *
28504688 TTACAAATTAAATCTCTAATA
1 TTACAAATCATATCTCTAAGA
28504709 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATC-TCTAAGA
* *
28504732 TTGCATATCATA--TCTAAGA
1 TTACAAATCATATCTCTAAGA
*
28504751 TTGCATATATCATATCT
1 TTACA-A-ATCATATCT
28504768 AAGATCATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
19 12 0.26
21 10 0.21
22 15 0.32
23 10 0.21
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.39
Consensus pattern (21 bp):
TTACAAATCATATCTCTAAGA
Found at i:28504749 original size:19 final size:20
Alignment explanation
Indices: 28504725--28504772 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
28504715 AATCATATCT
28504725 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
28504744 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
28504765 TCTAAGAT
1 TCTAAGAT
28504773 CATATCTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 11 0.41
21 16 0.59
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:28504792 original size:14 final size:12
Alignment explanation
Indices: 28504759--28504784 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
28504749 GATTGCATAT
28504759 ATCATATCTAAG
1 ATCATATCTAAG
28504771 ATCATATCTAAG
1 ATCATATCTAAG
28504783 AT
1 AT
28504785 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:28505623 original size:44 final size:44
Alignment explanation
Indices: 28505573--28505782 Score: 262
Period size: 44 Copynumber: 4.8 Consensus size: 44
28505563 ATCTGCTATT
* * *
28505573 TTCAACCTAATCCACTACTG-CTAAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* **
28505617 TTCAACCTATTCCACTGTTGACCAGGGAGATA-GAACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
* * * * *
28505661 TTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
28505705 TTAAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
28505749 TTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
28505783 GCTGGTGATA
Statistics
Matches: 141, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.02
44 135 0.96
45 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:28510799 original size:88 final size:88
Alignment explanation
Indices: 28510552--28510799 Score: 370
Period size: 88 Copynumber: 2.8 Consensus size: 88
28510542 CCCCGTATCA
* * * *
28510552 GCTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACTTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCT
*
28510617 CTGCTGCAACCCAGGGAGGCAAG
66 CTGCTGTAACCCAGGGAGGCAAG
* * * * *
28510640 GCTGGTGTCTTCAATTTGCTTCACTGTCGGTGCAGGAAAGCAAGATCTGTTATTTTTAGCCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCT
28510705 CTGCTGTAACCCAGGGAGGCAAG
66 CTGCTGTAACCCAGGGAGGCAAG
* * *
28510728 GCTGGTGTCTTCGATCTACTTCGCTATCGGTGCAGGAAGGCAAGATCTACTATTTTTAGCCTGCT
1 GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCT
*
28510793 CCGCTGT
66 CTGCTGT
28510800 CGTTGTCGCT
Statistics
Matches: 141, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 141 1.00
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (88 bp):
GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCT
CTGCTGTAACCCAGGGAGGCAAG
Found at i:28510935 original size:44 final size:43
Alignment explanation
Indices: 28510877--28511423 Score: 453
Period size: 44 Copynumber: 12.3 Consensus size: 43
28510867 CAAGAAGGCT
* * *
28510877 AGATCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACA
1 AGATCTGCTATCTTCGATCTACTTC-CACCAATATATGAAGACA
* * **
28510921 AGATCTGCTTTCTTCGATCTACTTTGCCACCAGTATGGGAAGACA
1 AGATCTGCTATCTTCGATCTAC-TT-CCACCAATATATGAAGACA
* * *
28510966 AGATCTGC-ATCTTCGATCCACTTCCTAACAATATAAGAAGACA
1 AGATCTGCTATCTTCGATCTACTTCC-ACCAATATATGAAGACA
* * * * *
28511009 GGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAATACA
1 AGATCTGCTATCTTCGATCTACTTC-CACCAATATATGAAGACA
* * **
28511053 AGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACA
1 AGATCTGCTATCTTCGATCTACTT--CCACCAATATATGAAGACA
* *
28511098 AGATCTGC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACA
1 AGATCTGCTATCTTCGATCTACTTC-C-ACCAATATATGAAGACA
* *
28511142 GGATCTGCTATCTTCGATCTACTT-CACGTCAATACATGAAGACA
1 AGATCTGCTATCTTCGATCTACTTCCAC--CAATATATGAAGACA
* *
28511186 AGATCTGCTTTCTTCGATCTACACTCCGCCACCAATAT-TGGAAGACA
1 AGATCTGCTATCTTCGATCT--ACT--TCCACCAATATAT-GAAGACA
* *
28511233 AGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACA
1 AGATCTGCTATCTTCGATCTACTTCC-ACCAATATATGAAGACA
* * * * *
28511276 TGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACA
1 AGATCTGCTATCTTCGATCTACTTC-CACCAATATATGAAGACA
* * * * **
28511320 AGGTCTACTTTCTTCGATCTACTCAGCCACCAATATGGGAAGACA
1 AGATCTGCTATCTTCGATCTACT--TCCACCAATATATGAAGACA
*
28511365 AGATCTGC-ATCTTCGAT-TCACTTCGCTACCAATATA-GAAAGACT
1 AGATCTGCTATCTTCGATCT-ACTTC-C-ACCAATATATG-AAGACA
* *
28511409 GGACCTGCTATCTTC
1 AGATCTGCTATCTTC
28511424 ATTGATATGC
Statistics
Matches: 402, Mismatches: 72, Indels: 57
0.76 0.14 0.11
Matches are distributed among these distances:
42 8 0.02
43 47 0.12
44 224 0.56
45 84 0.21
46 16 0.04
47 20 0.05
49 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
AGATCTGCTATCTTCGATCTACTTCCACCAATATATGAAGACA
Found at i:28511105 original size:132 final size:133
Alignment explanation
Indices: 28510881--28511423 Score: 860
Period size: 132 Copynumber: 4.1 Consensus size: 133
28510871 AAGGCTAGAT
* *
28510881 CTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTACTTT
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *
28510946 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTAACAATATAAGAAGACAG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACAG
28511010 GAC
131 GAC
*
28511013 CTGCTATCTTCGATCTACTTCACGCCAATACATGAATACAAGATCTGCTTTCTTCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
* *
28511078 GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACAG
*
28511143 GAT
131 GAC
*
28511146 CTGCTATCTTCGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACACT
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT--ACT
* * *
28511211 CCGCCACCAATATTGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGAC
64 TCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGAC
*
28511275 ATGAC
129 AGGAC
* * *
28511280 CTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGGTCTACTTTCTTCGATCTAC-TC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
*
28511344 AGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATTCACTTCGCTACCAATAT-AGAAAGAC
66 -GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAG-AAGAC
*
28511408 TGGAC
129 AGGAC
28511413 CTGCTATCTTC
1 CTGCTATCTTC
28511424 ATTGATATGC
Statistics
Matches: 382, Mismatches: 23, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
131 1 0.00
132 151 0.40
133 107 0.28
134 77 0.20
135 46 0.12
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (133 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAAGAAGACAG
GAC
Found at i:28511315 original size:267 final size:265
Alignment explanation
Indices: 28510878--28511423 Score: 896
Period size: 267 Copynumber: 2.1 Consensus size: 265
28510868 AAGAAGGCTA
28510878 GATCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTAC
** *
28510943 TTTGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTAACAATATAAGAAGAC
66 TCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTAACAATATAAGAAGAC
* * *
28511008 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAATACAAGATCTGCTTTCTTCGATCT
131 AGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCT
* *
28511073 ACTTC-GCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGA
196 AC-TCAGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGAA
28511137 AGACAG
260 AGACAG
* *
28511143 GATCTGCTATCTTCGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCT--
* * *
28511208 ACTCCGCCACCAATATTGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
64 ACTCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTAACAATATAAGAAG
* *
28511273 ACATGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGGTCTACTTTCTTCGAT
129 ACAGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGAT
*
28511338 CTACTCAGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATTCACTTCGCTACCAATATAGA
194 CTACTCAGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGA
*
28511403 AAGACTG
259 AAGACAG
*
28511410 GACCTGCTATCTTC
1 GATCTGCTATCTTC
28511424 ATTGATATGC
Statistics
Matches: 260, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
265 61 0.23
266 2 0.01
267 197 0.76
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (265 bp):
GATCTGCTATCTTCGATCTACTTCACGCCAATACATAAAGACAAGATCTGCTTTCTTCGATCTAC
TCCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTAACAATATAAGAAGAC
AGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCT
ACTCAGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGAAA
GACAG
Found at i:28513039 original size:16 final size:16
Alignment explanation
Indices: 28513018--28513057 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
28513008 CGGTAGAGTT
28513018 TTTTTTTGCGCCATCA
1 TTTTTTTGCGCCATCA
*
28513034 TTTTTTTGCGCCATCT
1 TTTTTTTGCGCCATCA
28513050 TTTTTTTG
1 TTTTTTTG
28513058 GGCAATATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.07, C:0.20, G:0.12, T:0.60
Consensus pattern (16 bp):
TTTTTTTGCGCCATCA
Found at i:28516671 original size:30 final size:28
Alignment explanation
Indices: 28516613--28516690 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
28516603 AAAAGGGTAC
* * *
28516613 AAAA-TATATACATGTACATATATAAAA
1 AAAATTATATACATATATATAGATAAAA
* *
28516640 AAAATTATATACATATATATAGATTATA
1 AAAATTATATACATATATATAGATAAAA
*
28516668 AAAATGATAATTACATATATATA
1 AAAATTAT-A-TACATATATATA
28516691 TAAACAAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 4 0.10
28 25 0.60
29 1 0.02
30 12 0.29
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAATTATATACATATATATAGATAAAA
Found at i:28516757 original size:24 final size:24
Alignment explanation
Indices: 28516729--28516778 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
28516719 AAAATTAAAT
28516729 AATTTA-GAAAAATATATATAAAAA
1 AATTTATGAAAAATA-ATATAAAAA
* *
28516753 AATTTATGAAGAATAATATAAGAA
1 AATTTATGAAAAATAATATAAAAA
28516777 AA
1 AA
28516779 CATACGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (24 bp):
AATTTATGAAAAATAATATAAAAA
Found at i:28516876 original size:17 final size:17
Alignment explanation
Indices: 28516854--28516897 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
28516844 TAGGAAATAA
28516854 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
28516871 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
28516888 -ATATGTATAT
1 AAAATGTATAT
28516898 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:28517034 original size:3 final size:3
Alignment explanation
Indices: 28517026--28517061 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
28517016 GTATATATAG
* *
28517026 TAA TAA TAA TAA TGA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
28517062 CTTAATAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:28517399 original size:22 final size:21
Alignment explanation
Indices: 28517364--28517421 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
28517354 AAAGGGTATC
* *
28517364 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
28517385 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
28517408 TGCATATCATATCT
1 TACAAATCATATCT
28517422 AAGATCATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:28517446 original size:14 final size:12
Alignment explanation
Indices: 28517413--28517438 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
28517403 AAGATTGCAT
28517413 ATCATATCTAAG
1 ATCATATCTAAG
28517425 ATCATATCTAAG
1 ATCATATCTAAG
28517437 AT
1 AT
28517439 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:28520256 original size:48 final size:48
Alignment explanation
Indices: 28520186--28520359 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
28520176 AGAACAAATT
* * * *
28520186 TCTCGGTGGCCTACACACAGTCCGTACCACCTTTGTGTAATAACAGAC
1 TCTCGGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAA
* * **
28520234 TCTCGGTGGCCTGCACATAGTCCGTGCCACCCTTGTATCTTAACAGAA
1 TCTCGGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAA
* * ** **
28520282 TATTGGTGGCCTGCACACAGTCCGTGTCACCCTTGTATCTTAACAGAA
1 TCTCGGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAA
* * * *
28520330 TATTGGTGGCTTGCACACAGTCCGTGCCAC
1 TCTCGGTGGCCTGCACACAGTCCGTACCAC
28520360 ATATGTGACC
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (48 bp):
TCTCGGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAA
Found at i:28522734 original size:16 final size:16
Alignment explanation
Indices: 28522713--28522743 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
28522703 TTTTGGTATT
*
28522713 ATTTTAATATTAAATA
1 ATTTTAAAATTAAATA
28522729 ATTTTAAAATTAAAT
1 ATTTTAAAATTAAAT
28522744 GAAATTAACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTAAAATTAAATA
Found at i:28534898 original size:3 final size:3
Alignment explanation
Indices: 28534890--28534940 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
28534880 TCAGATTATG
* * * *
28534890 TTA TTA TTA TTA TCA TT- TTCA TTA TCA TTA TCA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
28534935 TTA TTA
1 TTA TTA
28534941 GATTGTTTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:28540803 original size:10 final size:10
Alignment explanation
Indices: 28540788--28540816 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
28540778 AGTAGTAGAG
28540788 GACAAAAAAA
1 GACAAAAAAA
28540798 GACAAAAAAA
1 GACAAAAAAA
28540808 GACAAAAAA
1 GACAAAAAA
28540817 CAAAAAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.79, C:0.10, G:0.10, T:0.00
Consensus pattern (10 bp):
GACAAAAAAA
Found at i:28540831 original size:10 final size:10
Alignment explanation
Indices: 28540789--28540849 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
28540779 GTAGTAGAGG
*
28540789 ACAAAAAAAG
1 ACAAAAAAAA
28540799 ACAAAAAAAGACA
1 AC-AAAAAA-A-A
*
28540812 AAAAACAAAAA
1 ACAAA-AAAAA
28540823 ACAAAAAAAA
1 ACAAAAAAAA
*
28540833 ACAAAAAGAA
1 ACAAAAAAAA
*
28540843 ATAAAAA
1 ACAAAAA
28540850 CCTCTACCGG
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
10 22 0.52
11 11 0.26
12 5 0.12
13 4 0.10
ACGTcount: A:0.84, C:0.10, G:0.05, T:0.02
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:28540848 original size:16 final size:16
Alignment explanation
Indices: 28540791--28540850 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
28540781 AGTAGAGGAC
28540791 AAAAAAAGACAAAAAAAG
1 AAAAAAA-AC-AAAAAAG
* *
28540809 ACAAAAAACAAAAAAC
1 AAAAAAAACAAAAAAG
28540825 AAAAAAAA-ACAAAAAG
1 AAAAAAAACA-AAAAAG
28540841 AAATAAAAAC
1 AAA-AAAAAC
28540851 CTCTACCGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 1 0.03
16 21 0.60
17 7 0.20
18 6 0.17
ACGTcount: A:0.83, C:0.10, G:0.05, T:0.02
Consensus pattern (16 bp):
AAAAAAAACAAAAAAG
Found at i:28540848 original size:17 final size:16
Alignment explanation
Indices: 28540791--28540850 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
28540781 AGTAGAGGAC
*
28540791 AAAAAAAGACAAAAAA
1 AAAAAAAAACAAAAAA
*
28540807 AGACAAAAAACAAAAAA
1 A-AAAAAAAACAAAAAA
*
28540824 CAAAAAAAAACAAAAAG
1 -AAAAAAAAACAAAAAA
*
28540841 AAATAAAAAC
1 AAAAAAAAAC
28540851 CTCTACCGGG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 10 0.27
17 26 0.70
18 1 0.03
ACGTcount: A:0.83, C:0.10, G:0.05, T:0.02
Consensus pattern (16 bp):
AAAAAAAAACAAAAAA
Found at i:28541347 original size:46 final size:51
Alignment explanation
Indices: 28541280--28541400 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 51
28541270 GGAGAAGGGG
* * **
28541280 CCAAGGTGAAAACCCCCAAAGGGCGCTTTGAG-TC-CTAAAAAA-GA-A-A
1 CCAAGGTGAAAACCCGCAAAGGGCGCATTGAGTTCAAAAAAAAAGGAGAGA
*
28541326 CCAAGGTGAAAACCCGCAAAGGGCGCATTGAGTTCAAAAAAAAAAGGAGAGG
1 CCAAGGTGAAAACCCGCAAAGGGCGCATTGAGTTC-AAAAAAAAAGGAGAGA
28541378 CCAAGGTGAAAACCCGCAAAGGG
1 CCAAGGTGAAAACCCGCAAAGGG
28541401 TGTCTTGAGA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
46 30 0.47
47 2 0.03
49 6 0.09
50 2 0.03
51 1 0.02
52 23 0.36
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.10
Consensus pattern (51 bp):
CCAAGGTGAAAACCCGCAAAGGGCGCATTGAGTTCAAAAAAAAAGGAGAGA
Found at i:28543033 original size:44 final size:44
Alignment explanation
Indices: 28542983--28543190 Score: 139
Period size: 44 Copynumber: 4.5 Consensus size: 44
28542973 TGCGGCGAAT
*
28542983 CTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACCAGC
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACCAAC
* * * * * *
28543027 CTTATCTCCCTGAAGTTGCAGCGGAGCAAACTGAAGACAGCGAAT
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCA-CCAAC
** * ** * * *
28543072 CTTAT-TTCCCTGGCGTTGTAGTGGAATAGATTAAAGCTACAAATTACGGCAAAT
1 CTTATCTT-CCTGAAGTTGCAGTGGAGCAAATTGAAGC--C-----AC--C-AAC
* *
28543126 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACCAAC
*
28543170 CTTATCTCCCTGAAGTTGCAG
1 CTTATCTTCCTGAAGTTGCAG
28543191 CAAAGCAGAC
Statistics
Matches: 123, Mismatches: 28, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
44 57 0.46
45 27 0.22
47 3 0.02
51 1 0.01
52 2 0.02
54 31 0.25
55 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGCCACCAAC
Done.