Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56598092
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1600000 characters in sequence are not A, C, G, or T
File 98 of 185
Found at i:30838439 original size:6 final size:6
Alignment explanation
Indices: 30838428--30838453 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
30838418 ATTTTTTAAT
30838428 TTAAAA TTAAAA TTAAAA TTAAAA TT
1 TTAAAA TTAAAA TTAAAA TTAAAA TT
30838454 TTATTTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
TTAAAA
Found at i:30859750 original size:41 final size:41
Alignment explanation
Indices: 30859691--30859858 Score: 187
Period size: 41 Copynumber: 4.1 Consensus size: 41
30859681 ATACAATTTG
* **
30859691 CCTGATACAATACACCGGCACGAAGCCTGCTAGGCTCAAGG
1 CCTGATACAATACACCGGCACGAAGCCTGCTAGGCACAAAA
* *
30859732 CTTGATACAATACACCGGCACGAAGCCTTCTAGGCACAAAA
1 CCTGATACAATACACCGGCACGAAGCCTGCTAGGCACAAAA
** *
30859773 CCTGATACAATACACTAGCACGAAGCCGGCTAGGCA-AAAA
1 CCTGATACAATACACCGGCACGAAGCCTGCTAGGCACAAAA
* * * * *
30859813 CCCTGATCCAAGACACCGGTACGAAGCC-GACTGGGCTCAAAA
1 -CCTGATACAATACACCGGCACGAAGCCTG-CTAGGCACAAAA
30859855 CCTG
1 CCTG
30859859 CTAGGCTCAA
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 5 0.05
41 98 0.92
42 4 0.04
ACGTcount: A:0.33, C:0.31, G:0.21, T:0.14
Consensus pattern (41 bp):
CCTGATACAATACACCGGCACGAAGCCTGCTAGGCACAAAA
Found at i:30869252 original size:27 final size:27
Alignment explanation
Indices: 30869214--30869266 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
30869204 CTGATGTCGA
30869214 TTGCCATAGAAAAGATACTATTAAGTG
1 TTGCCATAGAAAAGATACTATTAAGTG
* *
30869241 TTGCCATAGAAAATATACTGTTAAGT
1 TTGCCATAGAAAAGATACTATTAAGT
30869267 TATAGGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (27 bp):
TTGCCATAGAAAAGATACTATTAAGTG
Found at i:30877500 original size:17 final size:17
Alignment explanation
Indices: 30877469--30877501 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
30877459 GTACTGATTT
30877469 TGACATTCTTATGTCAA
1 TGACATTCTTATGTCAA
30877486 TGACAATTCTT-TGTCA
1 TGAC-ATTCTTATGTCA
30877502 TCAATCAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.42
Consensus pattern (17 bp):
TGACATTCTTATGTCAA
Found at i:30880573 original size:27 final size:25
Alignment explanation
Indices: 30880543--30880594 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 25
30880533 TTCATTTTTC
*
30880543 ATTTCCCATCTCATATTCATTTCTCAT
1 ATTTCCCATCTCA-ATAC-TTTCTCAT
* *
30880570 ATTTTCCATTTCAATACTTTCTCAT
1 ATTTCCCATCTCAATACTTTCTCAT
30880595 CTCATATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTCCCATCTCAATACTTTCTCAT
Found at i:30880598 original size:43 final size:43
Alignment explanation
Indices: 30880544--30880628 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
30880534 TCATTTTTCA
30880544 TTTCCCATCTCATATTCATTTCTCATATTT-TCCATTTCAATAC
1 TTTCCCATCTCATATTCATTTCTCATATTTGT-CATTTCAATAC
* *
30880587 TTTCTCATCTCATATTCATTTCTCATCTTTGTCATTTCAATA
1 TTTCCCATCTCATATTCATTTCTCATATTTGTCATTTCAATA
30880629 TCAATAACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.01, T:0.51
Consensus pattern (43 bp):
TTTCCCATCTCATATTCATTTCTCATATTTGTCATTTCAATAC
Found at i:30883117 original size:16 final size:16
Alignment explanation
Indices: 30883098--30883128 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
30883088 CTCTTAAAGT
30883098 TTATTTTTCTTTTATG
1 TTATTTTTCTTTTATG
30883114 TTATTTTTCTTTTAT
1 TTATTTTTCTTTTAT
30883129 TACTAGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.77
Consensus pattern (16 bp):
TTATTTTTCTTTTATG
Found at i:30891397 original size:16 final size:16
Alignment explanation
Indices: 30891378--30891408 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30891368 CTCTTGAAAT
30891378 TTATTTTTCTCTTATG
1 TTATTTTTCTCTTATG
*
30891394 TTATTTTTCTTTTAT
1 TTATTTTTCTCTTAT
30891409 TACTAGTACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTTTCTCTTATG
Found at i:30895602 original size:138 final size:138
Alignment explanation
Indices: 30895325--30896483 Score: 1688
Period size: 138 Copynumber: 8.4 Consensus size: 138
30895315 TAGAAAAAGG
* * * *
30895325 AATTATATTGTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
30895390 TATAATT-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
30895454 CATATATT
131 CATATATT
* *
30895462 AATTATATTCTCTCCAAAAGAATATTAATTTTCATGTCTTTTATAATTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
30895527 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAGTTAGTATTTTGTATCAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
30895592 CATATATT
131 CATATATT
* * * **
30895600 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATATTTTGGA--AAAAAGAAT
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTC-TTT-TATATTTT-GACCGAAATTAAT
* * * * * *
30895663 TAATATAATTGTTTATATTAATAAACTCGGTAAACTGTATACAATTAAAAGTTTATATGAATCAA
63 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAA
* *
30895728 TTTCATAAATT
128 ATTCATATATT
*
30895739 AATTATATTCTTTCCAAAAGAATATTAA-TTTCTATGTCTTTTATATTTTGACCGAAATTTATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACCGAAATTAATTA
* *
30895803 ATATAACTGTTTATATTAATAAATTCAGTAAAATATAT--AATTAATATTTTATATCAATCAAAT
65 ATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAAT
*
30895866 TCATATACT
130 TCATATATT
* * *
30895875 AATTATATTCTTTCCAAAA-AATATTAATTTTCATATCTTTTATATTTTGACTGAAATTAGTTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
30895939 TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATCAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
30896004 CATATATT
131 CATATATT
* * *
30896012 AATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATGAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * * * *
30896077 TATAATTATTTATATTAATAAATTCGGTAAAATATAAACAACTAAAATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
*
30896142 GATATATT
131 CATATATT
* *
30896150 AATTATTTTCTTTCCAAAAGAATATTAATTTTCATGTCTTTAATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
30896215 TAT-ATCTGATTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTATATCAATGAAAT
66 TATAAT-TGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAAT
30896279 TCATATATT
130 TCATATATT
* * *
30896288 ACTTATATTCTTTCCAAAA-AATAATAATTTTCATGTCTTTTATATTTTGACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *** *
30896352 TATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGGGTAAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
30896417 CATATATT
131 CATATATT
* * *
30896425 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTATTATAGTTTGACCGAAATT
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATT
30896484 GAAAATATAT
Statistics
Matches: 911, Mismatches: 97, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
135 73 0.08
136 53 0.06
137 249 0.27
138 421 0.46
139 106 0.12
140 7 0.01
141 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
CATATATT
Found at i:30896383 original size:275 final size:276
Alignment explanation
Indices: 30895325--30896483 Score: 1699
Period size: 275 Copynumber: 4.2 Consensus size: 276
30895315 TAGAAAAAGG
* * * *
30895325 AATTATATTGTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTAATATTTTGACCGAAATTAATTAA
30895390 TATAATT-TTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
* *
30895454 CATATATTAATTATATTCTCTCCAAAAGAATATTAATTTTCATGTCTTTTATAATTTGACCGAAA
131 CATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAA
* *
30895519 TTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAGTTAGTATTTTGTATCA
196 TTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATCA
30895584 ATCAAATTCATATATT
261 ATCAAATTCATATATT
* * **
30895600 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTATATATTTTGGA--AAAAAGAAT
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTC-TTTA-ATATTTT-GACCGAAATTAAT
* * * * * *
30895663 TAATATAATTGTTTATATTAATAAACTCGGTAAACTGTATACAATTAAAAGTTTATATGAATCAA
63 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAA
* *
30895728 TTTCATAAATTAATTATATTCTTTCCAAAAGAATATTAA-TTTCTATGTCTTTTATATTTTGACC
128 ATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACC
* * * *
30895792 GAAATTTATTAATATAACTGTTTATATTAATAAATTCAGTAAAATATAT--AATTAATATTTTAT
192 GAAATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGT
*
30895855 ATCAATCAAATTCATATACT
257 ATCAATCAAATTCATATATT
* * * * *
30895875 AATTATATTCTTTCCAAAA-AATATTAATTTTCATATCTTTTATATTTTGACTGAAATTAGTTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTAATATTTTGACCGAAATTAATTAA
* * *
30895939 TATAACTGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATCAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
* *
30896004 CATATATTAATTATATTCTTTCCAAAAAAATATTAATTTCCATGTCTTTTATATTTTGACCGAAA
131 CATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAA
* * * * * *
30896069 TGAATTAATATAATTATTTATATTAATAAATTCGGTAAAATATAAACAACTAAAATTTTGTATGA
196 TTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATCA
*
30896134 ATCAAATTGATATATT
261 ATCAAATTCATATATT
* *
30896150 AATTATTTTCTTTCCAAAAGAATATTAATTTTCATGTCTTTAATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTAATATTTTGACCGAAATTAATTAA
* * *
30896215 TAT-ATCTGATTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTATATCAATGAAAT
66 TATAAT-TGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAAT
* * *
30896279 TCATATATTACTTATATTCTTTCCAAAA-AATAATAATTTTCATGTCTTTTATATTTTGACTGAA
130 TCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAA
* ** *
30896343 ATTAATTAATATAATTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGGGTA
195 ATTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATC
30896408 AATCAAATTCATATATT
260 AATCAAATTCATATATT
*
30896425 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTATT-ATAGTTTGACCGAAATT
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCT-TTAATATTTTGACCGAAATT
30896484 GAAAATATAT
Statistics
Matches: 788, Mismatches: 83, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
271 2 0.00
272 7 0.01
273 163 0.21
274 19 0.02
275 289 0.37
276 150 0.19
277 156 0.20
278 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (276 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTAATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATATCAATCAAATT
CATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAA
TTAATTAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATCA
ATCAAATTCATATATT
Found at i:30905939 original size:19 final size:19
Alignment explanation
Indices: 30905849--30905939 Score: 76
Period size: 19 Copynumber: 4.8 Consensus size: 19
30905839 GGGTGGTACA
*
30905849 CATACTAGCATATGAAGTG
1 CATACTAGCACATGAAGTG
* **
30905868 CATCCT-GACACACAAAGTG
1 CATACTAG-CACATGAAGTG
* **
30905887 TATACTAGCACAAAAAGTG
1 CATACTAGCACATGAAGTG
* *
30905906 CATCCTAGCATATGAAGTG
1 CATACTAGCACATGAAGTG
*
30905925 CATACTGGCACATGA
1 CATACTAGCACATGA
30905940 GATGCATAGA
Statistics
Matches: 55, Mismatches: 15, Indels: 4
0.74 0.20 0.05
Matches are distributed among these distances:
18 1 0.02
19 53 0.96
20 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (19 bp):
CATACTAGCACATGAAGTG
Found at i:30906078 original size:21 final size:19
Alignment explanation
Indices: 30906046--30906087 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
30906036 ATATGAACCA
30906046 ATTTATTTATCAT-AATCTC
1 ATTTATTTATCATCAAT-TC
30906065 ATTTCATTTCATCATCAATTC
1 ATTT-ATTT-ATCATCAATTC
30906086 AT
1 AT
30906088 GTATGTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 9 0.45
22 3 0.15
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTTATTTATCATCAATTC
Found at i:30907051 original size:22 final size:22
Alignment explanation
Indices: 30907006--30907054 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
30906996 ATACACGTTA
* *
30907006 GAAATAAGTCGGGACTAAATTT
1 GAAAAAAGTCGGGACTAAAATT
30907028 GAAAAAAGTCGGGAC-AAACATT
1 GAAAAAAGTCGGGACTAAA-ATT
30907050 GAAAA
1 GAAAA
30907055 TTTTCAACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.49, C:0.10, G:0.22, T:0.18
Consensus pattern (22 bp):
GAAAAAAGTCGGGACTAAAATT
Found at i:30908531 original size:25 final size:25
Alignment explanation
Indices: 30908492--30908549 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
30908482 TCTTGTACAC
* *
30908492 GTATGCTCATACGAGCTATGAATTA
1 GTATGCTCATACGAGCGATAAATTA
*
30908517 GTATGCTCACT-CGAGCGGTAAATTA
1 GTATGCTCA-TACGAGCGATAAATTA
30908542 GTATGCTC
1 GTATGCTC
30908550 TCATGAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (25 bp):
GTATGCTCATACGAGCGATAAATTA
Found at i:30908562 original size:25 final size:26
Alignment explanation
Indices: 30908512--30908577 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
30908502 ACGAGCTATG
*
30908512 AATTAGTATGCTCAC-TCGAGCGGTA
1 AATTAGTATGCTCTCATCGAGCGGTA
**
30908537 AATTAGTATGCTCTCAT-GAGTTGTA
1 AATTAGTATGCTCTCATCGAGCGGTA
**
30908562 AATCGGTATGCTCTCA
1 AATTAGTATGCTCTCA
30908578 CAAGCTGTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (26 bp):
AATTAGTATGCTCTCATCGAGCGGTA
Found at i:30918392 original size:28 final size:28
Alignment explanation
Indices: 30918356--30918451 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
30918346 AAAAATAAAA
30918356 ATTTATCAAAATATTACAAACTTTTTTT
1 ATTTATCAAAATATTACAAACTTTTTTT
30918384 ATTTATCAAAATATTAC-AACTTTTTTTT
1 ATTTATCAAAATATTACAAAC-TTTTTTT
30918412 ATTTA-CTAAAATATATA-AAA--TTTTTT
1 ATTTATC-AAAATAT-TACAAACTTTTTTT
30918438 ATTTATCAAAATAT
1 ATTTATCAAAATAT
30918452 ATAAAAAAAC
Statistics
Matches: 63, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
26 18 0.29
27 5 0.08
28 36 0.57
29 4 0.06
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (28 bp):
ATTTATCAAAATATTACAAACTTTTTTT
Found at i:30918527 original size:27 final size:26
Alignment explanation
Indices: 30918489--30918547 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 26
30918479 CTTGACACCA
*
30918489 GCCAATTAAATTGGTGGCACCAAAGGT
1 GCCAAATAAATTGGTGGCACC-AAGGT
*
30918516 GCCAAATAAATTGGTGGCACCATGGT
1 GCCAAATAAATTGGTGGCACCAAGGT
30918542 GCCAAA
1 GCCAAA
30918548 GGAAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
GCCAAATAAATTGGTGGCACCAAGGT
Found at i:30918674 original size:17 final size:18
Alignment explanation
Indices: 30918620--30918693 Score: 105
Period size: 18 Copynumber: 4.1 Consensus size: 18
30918610 TCAACTCATT
* *
30918620 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAA-ACTA
30918639 TTTTAATTTAATAAACTA
1 TTTTAATTTAATAAACTA
*
30918657 TTTTCATTTAAT-AACTA
1 TTTTAATTTAATAAACTA
30918674 TTTTAATTTAATAAACTA
1 TTTTAATTTAATAAACTA
30918692 TT
1 TT
30918694 AAATAATACT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
17 16 0.32
18 21 0.42
19 13 0.26
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAATTTAATAAACTA
Found at i:30918681 original size:35 final size:36
Alignment explanation
Indices: 30918620--30918693 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 36
30918610 TCAACTCATT
*
30918620 TTTTTATTTAATAACTCTATTTTAATTTAATAAACTA
1 TTTTCATTTAATAAC-CTATTTTAATTTAATAAACTA
30918657 TTTTCATTTAATAA-CTATTTTAATTTAATAAACTA
1 TTTTCATTTAATAACCTATTTTAATTTAATAAACTA
30918692 TT
1 TT
30918694 AAATAATACT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 23 0.64
37 13 0.36
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (36 bp):
TTTTCATTTAATAACCTATTTTAATTTAATAAACTA
Found at i:30918950 original size:18 final size:19
Alignment explanation
Indices: 30918912--30918950 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30918902 CAACTCATTT
* *
30918912 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAAATCTA
30918931 TTTTAATTTAATAAAT-TA
1 TTTTAATTTAATAAATCTA
30918949 TT
1 TT
30918951 AAGTAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTAATTTAATAAATCTA
Found at i:30919294 original size:37 final size:37
Alignment explanation
Indices: 30919252--30919322 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
30919242 AGTATTACTT
30919252 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
30919289 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
30919323 AAAAAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.39
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:30919327 original size:19 final size:19
Alignment explanation
Indices: 30919258--30919326 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
30919248 ACTTAATAGT
30919258 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
30919277 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
30919295 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
30919314 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
30919327 AAATAAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:30919454 original size:27 final size:26
Alignment explanation
Indices: 30919398--30919483 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
30919388 TTTTTTTTCC
*
30919398 TTTGGCACCATGGTGCCGCCAA-TGA
1 TTTGGCACCATGGTGCCGCCAATTTA
*
30919423 CTTTGGCACCAATGGTGCCACCAATTTA
1 -TTTGGCACC-ATGGTGCCGCCAATTTA
* *
30919451 TTTGGCACCTTTGGTGCTGCCAATTTA
1 TTTGGCACC-ATGGTGCCGCCAATTTA
*
30919478 ATTGGC
1 TTTGGC
30919484 TGGTGTCAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 9 0.18
27 40 0.78
28 2 0.04
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (26 bp):
TTTGGCACCATGGTGCCGCCAATTTA
Found at i:30919584 original size:27 final size:28
Alignment explanation
Indices: 30919524--30919594 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
30919514 TTTTTTTTTG
30919524 ATATATTTTGATAAATAAAAAAAAATTT
1 ATATATTTTGATAAATAAAAAAAAATTT
*
30919552 ATATATTTTGGTAAAT-AAAAAAAATTGT
1 ATATATTTTGATAAATAAAAAAAAATT-T
*
30919580 A-ATATTTTAATAAAT
1 ATATATTTTGATAAAT
30919595 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.41
Consensus pattern (28 bp):
ATATATTTTGATAAATAAAAAAAAATTT
Found at i:30925392 original size:3 final size:3
Alignment explanation
Indices: 30925384--30925419 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
30925374 CTTCCTTTCT
30925384 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
30925420 ATTTCGACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:30932064 original size:109 final size:109
Alignment explanation
Indices: 30931873--30932097 Score: 441
Period size: 109 Copynumber: 2.1 Consensus size: 109
30931863 ACGAGTATTG
30931873 AAACATTGAAGTATGGCTAAGTATGTATATTTCTGAAATGCATGCTATGAGATGTGTGTACTGAT
1 AAACATTGAAGTATGGCTAAGTATGTATATTTCTGAAATGCATGCTATGAGATGTGTGTACTGAT
30931938 TGAATGTATGTTAGTAAAGTAAAATATTGAATTTAAATTGTCTC
66 TGAATGTATGTTAGTAAAGTAAAATATTGAATTTAAATTGTCTC
30931982 AAACATTGAAGTATGGCTAAGTATGTATATTTCTGAAATGCATGCTATGAGATGTGTGTACTGAT
1 AAACATTGAAGTATGGCTAAGTATGTATATTTCTGAAATGCATGCTATGAGATGTGTGTACTGAT
30932047 TGAATGTATGTTAGTAAAGTAAAATATTGAATTTAAATTGTCTC
66 TGAATGTATGTTAGTAAAGTAAAATATTGAATTTAAATTGTCTC
30932091 AATACAT
1 AA-ACAT
30932098 GAAAAGTCTG
Statistics
Matches: 115, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
109 111 0.97
110 4 0.03
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.37
Consensus pattern (109 bp):
AAACATTGAAGTATGGCTAAGTATGTATATTTCTGAAATGCATGCTATGAGATGTGTGTACTGAT
TGAATGTATGTTAGTAAAGTAAAATATTGAATTTAAATTGTCTC
Found at i:30932377 original size:27 final size:27
Alignment explanation
Indices: 30932339--30932464 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
30932329 CATGACAGCT
30932339 AAAGAATAGCCTTTGTGGCAAACTCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* *
30932366 AAAGGATAGCCTTTGTGGCAAACTCTA
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* * *
30932393 AAAGAATAACCCTTATGGCAAACTCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* *
30932420 AAAGAATAGCCTTTGTGGCGAACTTTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
*
30932447 AAAGGAAT-GTCTTTGTGG
1 AAA-GAATAGCCTTTGTGG
30932465 TGAACTCGGA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 81 0.95
28 4 0.05
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAGAATAGCCTTTGTGGCAAACTCTG
Found at i:30937068 original size:5 final size:5
Alignment explanation
Indices: 30937057--30937093 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
30937047 GGAAAATATT
* *
30937057 TAAAA CAAAA CAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
30937094 TTACAATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (5 bp):
TAAAA
Found at i:30939572 original size:5 final size:5
Alignment explanation
Indices: 30939543--30939581 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
30939533 TAAATTTAGC
* *
30939543 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
30939582 CATCCTAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:30943108 original size:3 final size:3
Alignment explanation
Indices: 30943102--30943196 Score: 154
Period size: 3 Copynumber: 31.7 Consensus size: 3
30943092 CTAGTACTCT
*
30943102 TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
30943150 TCC TTC TTT TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
30943197 AAGTCGGGCT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:30948089 original size:101 final size:101
Alignment explanation
Indices: 30947914--30948106 Score: 323
Period size: 101 Copynumber: 1.9 Consensus size: 101
30947904 GAAGATGCTT
* * * *
30947914 CAAGTGTGGATCCAAAGAACATATGCTTAGGGACTGGTTGGAACGCGTGGAGAGGTTACAAACTC
1 CAAGTGTGGATCCAAAGAACATATGCTAAGGGACTGGCTGAAACGCGTGGAGAGGTCACAAACTC
* *
30947979 AGAGTTTAATCCCCATACCACTGCAAGTAGGTGAAG
66 AAAGTTTAATCCCCATACCACTACAAGTAGGTGAAG
*
30948015 CAAGTGTGGATCCAAAGAACATATGCTAAGGGACTGGCTGAAACGGGTGGAGAGGTCACAAACTC
1 CAAGTGTGGATCCAAAGAACATATGCTAAGGGACTGGCTGAAACGCGTGGAGAGGTCACAAACTC
30948080 AAAGTTTAATCCCCATACCACTACAAG
66 AAAGTTTAATCCCCATACCACTACAAG
30948107 AAGATGCTCG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 85 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (101 bp):
CAAGTGTGGATCCAAAGAACATATGCTAAGGGACTGGCTGAAACGCGTGGAGAGGTCACAAACTC
AAAGTTTAATCCCCATACCACTACAAGTAGGTGAAG
Found at i:30952333 original size:53 final size:53
Alignment explanation
Indices: 30952253--30952353 Score: 166
Period size: 53 Copynumber: 1.9 Consensus size: 53
30952243 TCACAACACT
* * *
30952253 GAAGACCATATCATGTAAGATCGTAACTGGTGGATTATGGCATCATATATACA
1 GAAGACCATATCATGTAAGACCATAACTGGTGGATTATGACATCATATATACA
*
30952306 GAAGACTATATCATGTAAGACCATAACTGGTGGATTATGACATCATAT
1 GAAGACCATATCATGTAAGACCATAACTGGTGGATTATGACATCATAT
30952354 GGAAGAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (53 bp):
GAAGACCATATCATGTAAGACCATAACTGGTGGATTATGACATCATATATACA
Found at i:30952573 original size:61 final size:61
Alignment explanation
Indices: 30952476--30952640 Score: 215
Period size: 60 Copynumber: 2.7 Consensus size: 61
30952466 CAAGAAAGGA
* * * * *
30952476 AAAGCCTTTTGTGGCGAGTACTGGATGTAAAAGAATGCCTTTGTTGCAAAACTTTGGATAGG
1 AAAGCC-TTTGTGGTGAGTACTGAATGTAAAAGAATGCCTTTGTTGCAAAAATCTGGACAGG
* * * *
30952538 AAAGCCTTTGTCGTGAGTACTGAATGTAAATGAATGCCTTT-ATGTAAAAATCTGGACAGG
1 AAAGCCTTTGTGGTGAGTACTGAATGTAAAAGAATGCCTTTGTTGCAAAAATCTGGACAGG
* *
30952598 AAAGCCTTTGTGGTGAGTATTGAATGTAAAGGAATGCCTTTGT
1 AAAGCCTTTGTGGTGAGTACTGAATGTAAAAGAATGCCTTTGT
30952641 GGTGATTACT
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
60 52 0.58
61 31 0.35
62 6 0.07
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (61 bp):
AAAGCCTTTGTGGTGAGTACTGAATGTAAAAGAATGCCTTTGTTGCAAAAATCTGGACAGG
Found at i:30952637 original size:32 final size:32
Alignment explanation
Indices: 30952595--30952675 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
30952585 AAATCTGGAC
*
30952595 AGGAAAGCCTTTGTGGTGAGTATTGA-ATGTAA
1 AGGAAAGCCTTTGTGGTGAGTACT-ATATGTAA
* *
30952627 AGGAATGCCTTTGTGGTGATTACTATATGTAA
1 AGGAAAGCCTTTGTGGTGAGTACTATATGTAA
* *
30952659 AGGAACGTCTTTGTGGT
1 AGGAAAGCCTTTGTGGT
30952676 AAAAATTTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 1 0.02
32 42 0.98
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.35
Consensus pattern (32 bp):
AGGAAAGCCTTTGTGGTGAGTACTATATGTAA
Found at i:30952657 original size:92 final size:94
Alignment explanation
Indices: 30952535--30952707 Score: 217
Period size: 92 Copynumber: 1.9 Consensus size: 94
30952525 AACTTTGGAT
* * *
30952535 AGGAAAGCCTTTGTCGTGAGTACTGAATGTAAATGAATGCCTTTAT-GTAAAAATCTGGACAGGA
1 AGGAAAGCCTTTGTCGTGAGTACTGAATGTAAAGGAACGCCTTTATGGTAAAAATCTGGACAAGA
* *
30952599 A-AGCCTTTGTGGTGAGTATTGAATGTAA
66 ATAGACTTTATGGTGAGTATTGAATGTAA
* * * * * *
30952627 AGGAATGCCTTTGTGGTGATTACT-ATATGTAAAGGAACGTCTTTGTGGTAAAAATTTGGACAAG
1 AGGAAAGCCTTTGTCGTGAGTACTGA-ATGTAAAGGAACGCCTTTATGGTAAAAATCTGGACAAG
30952691 AATAGACTTTATGGTGA
65 AATAGACTTTATGGTGA
30952708 CCTCTGTTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
91 1 0.01
92 37 0.55
93 17 0.25
94 12 0.18
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (94 bp):
AGGAAAGCCTTTGTCGTGAGTACTGAATGTAAAGGAACGCCTTTATGGTAAAAATCTGGACAAGA
ATAGACTTTATGGTGAGTATTGAATGTAA
Found at i:30953696 original size:63 final size:63
Alignment explanation
Indices: 30953597--30953723 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
30953587 GTAAGGAAGT
30953597 ATGTGCCGAGGGACAACTGCAGGGCTGCAACAAAGGAGTGGCAAAATGGGCTATTATGCATAC
1 ATGTGCCGAGGGACAACTGCAGGGCTGCAACAAAGGAGTGGCAAAATGGGCTATTATGCATAC
30953660 ATGTGCCGAGGGACAACTGCAGGGCTGCAACAAAGGAGTGGCAAAATGGGCTATTATGCATAC
1 ATGTGCCGAGGGACAACTGCAGGGCTGCAACAAAGGAGTGGCAAAATGGGCTATTATGCATAC
30953723 A
1 A
30953724 GATCTAGTTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.32, C:0.19, G:0.31, T:0.17
Consensus pattern (63 bp):
ATGTGCCGAGGGACAACTGCAGGGCTGCAACAAAGGAGTGGCAAAATGGGCTATTATGCATAC
Found at i:30956285 original size:26 final size:26
Alignment explanation
Indices: 30956256--30956341 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
30956246 TGGAAAACCC
30956256 TAAAGAATGATATGTATGGCTAACTT
1 TAAAGAATGATATGTATGGCTAACTT
** * * *
30956282 TAAAGAATGGCAAGTATGACAAACTT
1 TAAAGAATGATATGTATGGCTAACTT
* * *
30956308 TGAAGAAATGATATGTGTGGCTAGCTT
1 TAAAG-AATGATATGTATGGCTAACTT
30956335 TGAAAGA
1 T-AAAGA
30956342 CTGGTAGGTA
Statistics
Matches: 44, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
26 25 0.57
27 16 0.36
28 3 0.07
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (26 bp):
TAAAGAATGATATGTATGGCTAACTT
Found at i:30956329 original size:53 final size:54
Alignment explanation
Indices: 30956261--30956366 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
30956251 AACCCTAAAG
*
30956261 AATGATATGTATGGCTAACTTT-AAAGAATGGCAAGTATGACAAACTTTGAAGA
1 AATGATATGTATGGCTAACTTTGAAAGAATGGCAAGTATGACAAACTCTGAAGA
* * * * *
30956314 AATGATATGTGTGGCTAGCTTTGAAAGACTGGTAGGTATGACAAACTCTGAAG
1 AATGATATGTATGGCTAACTTTGAAAGAATGGCAAGTATGACAAACTCTGAAG
30956367 GAATAGTACA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 20 0.43
54 26 0.57
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (54 bp):
AATGATATGTATGGCTAACTTTGAAAGAATGGCAAGTATGACAAACTCTGAAGA
Found at i:30961259 original size:50 final size:49
Alignment explanation
Indices: 30961130--30961259 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 49
30961120 GATAATAACA
* * * *
30961130 TGCCAAAGCCATGTCCTAGACATGGGCTTACATGGGATGTTTCATGTAT
1 TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTTTCATATAT
* * * *
30961179 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATAT-T
1 TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTT-TCATATAT
*
30961227 GGTGCCCATGCCATGTCCCAGACATGGCCTTAC
1 --TGCCAATGCCATGTCCCAGACATGGCCTTAC
30961260 GGCAGACCTC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 4 0.06
49 36 0.55
50 26 0.39
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTTTCATATAT
Found at i:30964721 original size:27 final size:27
Alignment explanation
Indices: 30964690--30964867 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30964680 TAAATTGTAC
30964690 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
30964717 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30964743 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
30964771 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30964799 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30964826 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30964853 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30964868 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30964804 original size:82 final size:81
Alignment explanation
Indices: 30964691--30964846 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30964681 AAATTGTACA
* *
30964691 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
30964755 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
30964772 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
30964837 TGCGAGTTGA
65 TGCGAATTGA
30964847 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30964858 original size:82 final size:81
Alignment explanation
Indices: 30964687--30964867 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
30964677 GATTAAATTG
* *
30964687 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
30964752 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
30964768 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
30964832 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
30964850 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
30964868 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:30969903 original size:13 final size:13
Alignment explanation
Indices: 30969887--30969975 Score: 81
Period size: 13 Copynumber: 6.7 Consensus size: 13
30969877 AAATGAATAA
30969887 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
30969900 ATGAATTGGTTAT
1 ATGAAATGGTTAT
* *
30969913 ATAGAAATAGATAT
1 AT-GAAATGGTTAT
30969927 ATGAAATGGTTAT
1 ATGAAATGGTTAT
**
30969940 ATG-AATCAATTAT
1 ATGAAAT-GGTTAT
* *
30969953 ATAGAAATAGATAT
1 AT-GAAATGGTTAT
30969967 ATGAAATGG
1 ATGAAATGG
30969976 AACATTGGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
12 3 0.05
13 38 0.62
14 17 0.28
15 3 0.05
ACGTcount: A:0.45, C:0.01, G:0.19, T:0.35
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:30969942 original size:40 final size:40
Alignment explanation
Indices: 30969887--30969975 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
30969877 AAATGAATAA
***
30969887 ATGAAATGGTTATATGAATTGGTTATATAGAAATAGATAT
1 ATGAAATGGTTATATGAATCAATTATATAGAAATAGATAT
30969927 ATGAAATGGTTATATGAATCAATTATATAGAAATAGATAT
1 ATGAAATGGTTATATGAATCAATTATATAGAAATAGATAT
30969967 ATGAAATGG
1 ATGAAATGG
30969976 AACATTGGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.45, C:0.01, G:0.19, T:0.35
Consensus pattern (40 bp):
ATGAAATGGTTATATGAATCAATTATATAGAAATAGATAT
Found at i:30971393 original size:24 final size:24
Alignment explanation
Indices: 30971366--30971417 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
30971356 AAGCTATGAT
30971366 TTGTAAGTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
***
30971390 TTGTTTTTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
30971414 TTGT
1 TTGT
30971418 TTTTATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (24 bp):
TTGTAAGTACAACTAGAACATTAC
Found at i:30971418 original size:24 final size:24
Alignment explanation
Indices: 30971373--30971422 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
30971363 GATTTGTAAG
30971373 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
30971397 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
30971421 TA
1 TA
30971423 TTATGTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (24 bp):
TACAACTAGAACATTACTTGTTTT
Found at i:30977978 original size:39 final size:40
Alignment explanation
Indices: 30977883--30978144 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
30977873 TTGAATGATG
*
30977883 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
30977921 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
30977962 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
30978001 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
30978040 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
30978079 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
30978118 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30978145 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:30987291 original size:50 final size:49
Alignment explanation
Indices: 30987162--30987291 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 49
30987152 GATAATAACA
* * * *
30987162 TGCCAAAGCCATGTCCTAGACATGGGCTTACATGGGATGTTTCATGTAC
1 TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTTTCATATAC
* * * *
30987211 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATAT-C
1 TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTT-TCATATAC
*
30987259 GGTGCCCATGCCATGTCCCAGACATGGCCTTAC
1 --TGCCAATGCCATGTCCCAGACATGGCCTTAC
30987292 GGCAGACCTC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
48 4 0.06
49 36 0.55
50 26 0.39
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGATGTTTCATATAC
Found at i:30987350 original size:50 final size:50
Alignment explanation
Indices: 30987162--30987355 Score: 142
Period size: 50 Copynumber: 3.9 Consensus size: 50
30987152 GATAATAACA
* * * * ** * *
30987162 TGCCAAAGCCATGTCCTAGACATGGGCTTACATGGGATGTTTCATGTAC--
1 TGCCAAGGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAT-CGG
* * * * * **
30987211 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAAGGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
* * * * *
30987261 TGCCCATGCCATGTCCCAGACATGGCCTTACG-GCAGACCTCTCATCTCGG
1 TGCCAAGGCCATGTCCCAGACATGGTCTTACGTG-GGACCTCTCATATCGG
* * *
30987311 TGCCAAGGCTATGTCCCATACATGGTCTTATGTGGGACCTCTCAT
1 TGCCAAGGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT
30987356 TACTTCAATA
Statistics
Matches: 114, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.33
50 74 0.65
51 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAAGGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
Found at i:30990752 original size:27 final size:27
Alignment explanation
Indices: 30990721--30990898 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30990711 TAAATTGTAC
30990721 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
30990748 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30990774 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
30990802 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30990830 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30990857 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30990884 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30990899 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30990835 original size:82 final size:81
Alignment explanation
Indices: 30990722--30990877 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30990712 AAATTGTACA
* *
30990722 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
30990786 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
30990803 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
30990868 TGCGAGTTGA
65 TGCGAATTGA
30990878 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30990889 original size:82 final size:81
Alignment explanation
Indices: 30990718--30990898 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
30990708 GATTAAATTG
* *
30990718 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
30990783 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
30990799 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
30990863 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
30990881 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
30990899 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:30997734 original size:27 final size:27
Alignment explanation
Indices: 30997702--30997879 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
30997692 TAAATTGTAC
30997702 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
** * ** *
30997729 TTCACTAAGTGTACGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30997755 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
30997783 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30997811 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30997838 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30997865 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30997880 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30997817 original size:82 final size:81
Alignment explanation
Indices: 30997703--30997858 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
30997693 AAATTGTACA
** *
30997703 GCACTAAGTGTGCGATTTGACTATGTTTCACTAAGTGTACGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
30997767 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
30997784 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
30997849 TGCGAGTTGA
65 TGCGAATTGA
30997859 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30997870 original size:82 final size:81
Alignment explanation
Indices: 30997699--30997879 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
30997689 GATTAAATTG
** *
30997699 TACAGCACTAAGTGTGCGATTTGACTATGTTTCACTAAGTGTACGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
30997764 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
30997780 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
30997844 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
30997862 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
30997880 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31002892 original size:13 final size:13
Alignment explanation
Indices: 31002876--31002964 Score: 90
Period size: 13 Copynumber: 6.7 Consensus size: 13
31002866 AAATGAATAA
31002876 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
31002889 ATGAATTGGTTAT
1 ATGAAATGGTTAT
* *
31002902 ATAGAAATAGATAT
1 AT-GAAATGGTTAT
31002916 ATGAAATGGTTAT
1 ATGAAATGGTTAT
*
31002929 ATG-AATCGATTAT
1 ATGAAAT-GGTTAT
* *
31002942 ATAGAAATAGATAT
1 AT-GAAATGGTTAT
31002956 ATGAAATGG
1 ATGAAATGG
31002965 AACATTGGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
12 3 0.05
13 39 0.64
14 16 0.26
15 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.20, T:0.35
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:31002931 original size:40 final size:40
Alignment explanation
Indices: 31002876--31002964 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
31002866 AAATGAATAA
* *
31002876 ATGAAATGGTTATATGAATTGGTTATATAGAAATAGATAT
1 ATGAAATGGTTATATGAATCGATTATATAGAAATAGATAT
31002916 ATGAAATGGTTATATGAATCGATTATATAGAAATAGATAT
1 ATGAAATGGTTATATGAATCGATTATATAGAAATAGATAT
31002956 ATGAAATGG
1 ATGAAATGG
31002965 AACATTGGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.44, C:0.01, G:0.20, T:0.35
Consensus pattern (40 bp):
ATGAAATGGTTATATGAATCGATTATATAGAAATAGATAT
Found at i:31002948 original size:27 final size:26
Alignment explanation
Indices: 31002885--31002960 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
31002875 AATGAAATGG
*
31002885 TTATATGAATTGGTTATATAGAAATAGA
1 TTATATGAAATGGTTATAT-G-AATAGA
*
31002913 -TATATGAAATGGTTATATGAATCGA
1 TTATATGAAATGGTTATATGAATAGA
* *
31002938 TTATATAGAAATAGATATATGAA
1 TTATAT-GAAATGGTTATATGAA
31002961 ATGGAACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 5 0.12
26 6 0.14
27 31 0.74
ACGTcount: A:0.45, C:0.01, G:0.17, T:0.37
Consensus pattern (26 bp):
TTATATGAAATGGTTATATGAATAGA
Found at i:31004420 original size:24 final size:24
Alignment explanation
Indices: 31004393--31004444 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
31004383 AAGCTATGAT
31004393 TTGTAAGTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
***
31004417 TTGTTTTTACAACTAGAACATTAC
1 TTGTAAGTACAACTAGAACATTAC
31004441 TTGT
1 TTGT
31004445 TTTTATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (24 bp):
TTGTAAGTACAACTAGAACATTAC
Found at i:31004445 original size:24 final size:24
Alignment explanation
Indices: 31004400--31004449 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
31004390 GATTTGTAAG
31004400 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
31004424 TACAACTAGAACATTACTTGTTTT
1 TACAACTAGAACATTACTTGTTTT
31004448 TA
1 TA
31004450 TTATGTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (24 bp):
TACAACTAGAACATTACTTGTTTT
Found at i:31011003 original size:39 final size:40
Alignment explanation
Indices: 31010908--31011130 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
31010898 TTGAATGATG
*
31010908 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
31010946 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
31010987 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
31011026 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
31011065 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
31011104 AACCGGGCTATGTCCTGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
31011131 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:31011094 original size:79 final size:81
Alignment explanation
Indices: 31010908--31011130 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
31010898 TTGAATGATG
* * *
31010908 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
31010970 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
31010987 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
31011048 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * * *
31011065 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
31011129 TG
66 TG
31011131 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 46 0.37
79 56 0.44
80 24 0.19
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:31011152 original size:79 final size:79
Alignment explanation
Indices: 31010908--31011163 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
31010898 TTGAATGATG
* * * *
31010908 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
31010969 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
31010987 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
31011051 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
31011065 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCTGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
31011128 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
31011145 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
31011164 TACGTGATTT
Statistics
Matches: 152, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:31027298 original size:11 final size:12
Alignment explanation
Indices: 31027282--31027313 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
31027272 AGACTTTCCC
31027282 TTCTTTTTTT-T
1 TTCTTTTTTTCT
31027293 TTCTTTTTTTCT
1 TTCTTTTTTTCT
31027305 TT-TTTTTTT
1 TTCTTTTTTT
31027314 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.85
12 3 0.15
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTCTTTTTTTCT
Found at i:31027320 original size:19 final size:19
Alignment explanation
Indices: 31027282--31027320 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
31027272 AGACTTTCCC
***
31027282 TTCTTTTTTTTTTCTTTTT
1 TTCTTTTTTTTTTAAATTT
31027301 TTCTTTTTTTTTTAAATTT
1 TTCTTTTTTTTTTAAATTT
31027320 T
1 T
31027321 AAATTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (19 bp):
TTCTTTTTTTTTTAAATTT
Found at i:31028275 original size:23 final size:22
Alignment explanation
Indices: 31028243--31028288 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
31028233 TTTTTAATTA
31028243 TTTAAATAAAGAAATAATTTTAT
1 TTTAAATAAA-AAATAATTTTAT
* * *
31028266 TTTAATTAAATAATATTTTTAT
1 TTTAAATAAAAAATAATTTTAT
31028288 T
1 T
31028289 ATCTCAATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAAATAAAAAATAATTTTAT
Found at i:31030656 original size:24 final size:24
Alignment explanation
Indices: 31030610--31030655 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
31030600 TTATGTGTAC
31030610 TTATTTTTTCTCTTCTTTCTTTTA
1 TTATTTTTTCTCTTCTTTCTTTTA
31030634 TTATTATTTT-TCTT-TTTCTTTT
1 TTATT-TTTTCTCTTCTTTCTTTT
31030656 TTTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.38
24 9 0.43
25 4 0.19
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (24 bp):
TTATTTTTTCTCTTCTTTCTTTTA
Found at i:31036605 original size:23 final size:22
Alignment explanation
Indices: 31036554--31036605 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
31036544 CCTCGTCTTT
31036554 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTGTTTCTTTTTCTAAC
31036576 -TCATTTTGTCTTCTTTCTTC-AAC
1 TTC-TTTTGT-TTCTTT-TTCTAAC
31036599 TTCTTTT
1 TTCTTTT
31036606 TCAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
21 2 0.08
22 6 0.23
23 13 0.50
24 5 0.19
ACGTcount: A:0.10, C:0.21, G:0.04, T:0.65
Consensus pattern (22 bp):
TTCTTTTGTTTCTTTTTCTAAC
Found at i:31041680 original size:10 final size:10
Alignment explanation
Indices: 31041665--31041743 Score: 65
Period size: 10 Copynumber: 7.9 Consensus size: 10
31041655 TTTAAAAAAC
31041665 AATAATTTTT
1 AATAATTTTT
31041675 AATAATTTTT
1 AATAATTTTT
*
31041685 -ACAATCTTTT
1 AATAAT-TTTT
**
31041695 -GCAATTTTT
1 AATAATTTTT
31041704 AATAATTATTTT
1 AATAA-T-TTTT
31041716 AATAATTTTT
1 AATAATTTTT
**
31041726 AATTTTTTTT
1 AATAATTTTT
31041736 AAT-ATTTT
1 AATAATTTT
31041744 AACATATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
9 12 0.21
10 35 0.60
11 2 0.03
12 9 0.16
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (10 bp):
AATAATTTTT
Found at i:31041729 original size:29 final size:28
Alignment explanation
Indices: 31041667--31041761 Score: 95
Period size: 29 Copynumber: 3.3 Consensus size: 28
31041657 TAAAAAACAA
31041667 TAATTTTTAATAAT-TTTT-ACAATCTTT
1 TAATTTTTAATAATATTTTAACAAT-TTT
*
31041694 TGCAATTTTTAATAATTATTTTAATAATTTT
1 T--AATTTTTAATAA-TATTTTAACAATTTT
**
31041725 TAATTTTTTTTAATATTTTAACATATTTT
1 TAATTTTTAATAATATTTTAACA-ATTTT
*
31041754 TATTTTTT
1 TAATTTTT
31041762 TTAAATCGTA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
27 1 0.02
28 9 0.16
29 34 0.60
30 1 0.02
31 8 0.14
32 4 0.07
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (28 bp):
TAATTTTTAATAATATTTTAACAATTTT
Found at i:31041753 original size:20 final size:20
Alignment explanation
Indices: 31041697--31041754 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
31041687 AATCTTTTGC
*
31041697 AATTTTTAATAATTATTTTAAT
1 AATTTTAAAT-ATT-TTTTAAT
* *
31041719 AATTTTTAATTTTTTTTAAT
1 AATTTTAAATATTTTTTAAT
31041739 -ATTTTAACATATTTTT
1 AATTTTAA-ATATTTTT
31041755 ATTTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 6 0.19
20 14 0.44
21 2 0.06
22 10 0.31
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
AATTTTAAATATTTTTTAAT
Found at i:31052010 original size:27 final size:27
Alignment explanation
Indices: 31051980--31052157 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31051970 ATATTGAGCC
* * * *
31051980 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31052007 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31052034 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31052062 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31052089 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31052116 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31052143 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31052158 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31052119 original size:82 final size:81
Alignment explanation
Indices: 31052001--31052156 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31051991 TGCTATATAA
* *
31052001 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31052066 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31052083 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31052147 CACTTAGTGC
65 CACTTAGTGC
31052157 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31059695 original size:27 final size:27
Alignment explanation
Indices: 31059665--31059842 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31059655 ATATTGAGTC
* * * *
31059665 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31059692 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31059719 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31059747 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31059774 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31059801 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31059828 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31059843 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31059804 original size:82 final size:81
Alignment explanation
Indices: 31059686--31059841 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31059676 TGCTATATAA
* *
31059686 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31059751 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31059768 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31059832 CACTTAGTGC
65 CACTTAGTGC
31059842 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31074559 original size:58 final size:58
Alignment explanation
Indices: 31074483--31074638 Score: 183
Period size: 58 Copynumber: 2.7 Consensus size: 58
31074473 TCTAAAAATG
* * * * * *
31074483 GCCACGAAGGCGTCCTTTTAACAGAAATAGCCACAAAGGCATATTTTTAATAGAGAT-A
1 GCCACAAAGGCATTCTTTTAACA-AAATAGCCACAAAGGCAAACTTATAATAGAGATCA
*
31074541 GCCACAAAGGCATTCTTTTAA-ATAAGATAGCCACAAATGCAAACTTATAATAGAGATCA
1 GCCACAAAGGCATTCTTTTAACA-AA-ATAGCCACAAAGGCAAACTTATAATAGAGATCA
*
31074600 -CCACAAAGGCATTCTTTTAACTAAGATAGCCACAAAGGC
1 GCCACAAAGGCATTCTTTTAAC-AAAATAGCCACAAAGGC
31074639 TTCCTTTCAG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
57 3 0.04
58 78 0.93
59 2 0.02
60 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (58 bp):
GCCACAAAGGCATTCTTTTAACAAAATAGCCACAAAGGCAAACTTATAATAGAGATCA
Found at i:31074645 original size:29 final size:28
Alignment explanation
Indices: 31074483--31074641 Score: 137
Period size: 29 Copynumber: 5.5 Consensus size: 28
31074473 TCTAAAAATG
* * * *
31074483 GCCACGAAGGCGTCCTTTTAACAGAAATA
1 GCCACAAAGGC-TTCTTTTAATAGAGATA
31074512 GCCACAAAGGCATAT-TTTTAATAGAGATA
1 GCCACAAAGGC-T-TCTTTTAATAGAGATA
31074541 GCCACAAAGGCATTCTTTTAAATA-AGATA
1 GCCACAAAGGC-TTCTTTT-AATAGAGATA
* ** *
31074570 GCCACAAATGCAAACTTATAATAGAGATCA
1 GCCACAAAGGC-TTCTTTTAATAGAGAT-A
31074600 -CCACAAAGGCATTCTTTTAACTA-AGATA
1 GCCACAAAGGC-TTCTTTTAA-TAGAGATA
31074628 GCCACAAAGGCTTC
1 GCCACAAAGGCTTC
31074642 CTTTCAGAGA
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
28 9 0.08
29 94 0.85
30 7 0.06
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (28 bp):
GCCACAAAGGCTTCTTTTAATAGAGATA
Found at i:31074662 original size:26 final size:26
Alignment explanation
Indices: 31074623--31074691 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
31074613 CTTTTAACTA
* *
31074623 AGATAGCCACAAAGGCTTCCTTTCAG
1 AGATAACCACAAAGGCTTCCATTCAG
* * *
31074649 AGATAACCATAAAGGCGTGCATTCAG
1 AGATAACCACAAAGGCTTCCATTCAG
*
31074675 AGATAACCGCAAAGGCT
1 AGATAACCACAAAGGCT
31074692 CTATAACCCC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
AGATAACCACAAAGGCTTCCATTCAG
Found at i:31077972 original size:26 final size:27
Alignment explanation
Indices: 31077943--31077999 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
31077933 TAAAACGGTA
31077943 ATTTTA-CCTCTAGGGGTATTTTGGTC
1 ATTTTACCCTCTAGGGGTATTTTGGTC
* *
31077969 ATTTTACCCTTTATGGGTATTTTGGTC
1 ATTTTACCCTCTAGGGGTATTTTGGTC
31077996 ATTT
1 ATTT
31078000 AATAACTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (27 bp):
ATTTTACCCTCTAGGGGTATTTTGGTC
Found at i:31088990 original size:42 final size:42
Alignment explanation
Indices: 31088931--31089068 Score: 161
Period size: 42 Copynumber: 3.1 Consensus size: 42
31088921 ATACTGACCT
31088931 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
*
31088973 TAAAGTAAGTCATAGCTTTCTGGTTCCACATATGTCTCGACTTCTAAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACA-A-------ACGTCT-AATAG
* *
31089024 -GAAGTAAGTCATAGCTTTTTGGTTCCACAAACGTCTAATAG
1 TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
31089065 TAAA
1 TAAA
31089069 TTAAAAAATG
Statistics
Matches: 81, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
41 5 0.06
42 37 0.46
43 1 0.01
49 1 0.01
50 32 0.40
51 5 0.06
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Consensus pattern (42 bp):
TAAAGTAAGTCATAGCTTTCTGGTTCCACAAACGTCTAATAG
Found at i:31095447 original size:18 final size:18
Alignment explanation
Indices: 31095424--31095459 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
31095414 CTTTTTTCCA
*
31095424 TATTAGTACGTCCTAGGT
1 TATTAGCACGTCCTAGGT
31095442 TATTAGCACGTCCTAGGT
1 TATTAGCACGTCCTAGGT
31095460 CTACATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (18 bp):
TATTAGCACGTCCTAGGT
Found at i:31095513 original size:37 final size:37
Alignment explanation
Indices: 31095462--31095539 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
31095452 TCCTAGGTCT
*
31095462 ACATAGTTGGTGTTC-TGTTTTGCAATGACATAATTTG
1 ACATAGTTGATGTTCAT-TTTTGCAATGACATAATTTG
31095499 ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
1 ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
31095536 ACAT
1 ACAT
31095540 TATGTTAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (37 bp):
ACATAGTTGATGTTCATTTTTGCAATGACATAATTTG
Found at i:31101188 original size:31 final size:30
Alignment explanation
Indices: 31101116--31101190 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
31101106 AAATATGTAT
*
31101116 TTTTTATTTTTTA-AATAA-ATTTA-ATAA
1 TTTTTATTTTTTATAATAATTTTTATATAA
**
31101143 TTATTTATGATTTATAATAATTTTTATATAA
1 TT-TTTATTTTTTATAATAATTTTTATATAA
31101174 TTTTATATTTTTTATAA
1 TTTT-TATTTTTTATAA
31101191 CTACAATTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.05
28 9 0.24
29 5 0.13
30 6 0.16
31 16 0.42
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (30 bp):
TTTTTATTTTTTATAATAATTTTTATATAA
Found at i:31101344 original size:16 final size:17
Alignment explanation
Indices: 31101323--31101361 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
31101313 TTTTAAATAA
31101323 TTATTTTAAA-TTTTAT
1 TTATTTTAAAGTTTTAT
31101339 TTA-TTTAAAGTTTTAT
1 TTATTTTAAAGTTTTAT
31101355 TTATTTT
1 TTATTTT
31101362 TTAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.29
16 12 0.57
17 3 0.14
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTATTTTAAAGTTTTAT
Found at i:31105168 original size:9 final size:9
Alignment explanation
Indices: 31105154--31105269 Score: 58
Period size: 10 Copynumber: 12.4 Consensus size: 9
31105144 CATATGACAA
31105154 AAAAATTAT
1 AAAAATTAT
31105163 AAAAA-T-T
1 AAAAATTAT
*
31105170 AAAAATCAAT
1 AAAAAT-TAT
*
31105180 AAAAGTTAT
1 AAAAATTAT
31105189 AAAAATT-T
1 AAAAATTAT
* *
31105197 TAAATTTACT
1 AAAAATTA-T
*
31105207 AAAAATTAGAA
1 AAAAATT--AT
*
31105218 AAAAGAATAT
1 AAAA-ATTAT
*
31105228 AAAAATTGT
1 AAAAATTAT
*
31105237 AAAATTTTAT
1 AAAA-ATTAT
* *
31105247 AAATATCAT
1 AAAAATTAT
31105256 AAAAAATTAT
1 -AAAAATTAT
31105266 AAAA
1 AAAA
31105270 TAAATTAAAA
Statistics
Matches: 77, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
7 6 0.08
8 7 0.09
9 27 0.35
10 30 0.39
11 4 0.05
12 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:31105643 original size:20 final size:17
Alignment explanation
Indices: 31105612--31105667 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
31105602 AATTAAAAAA
31105612 ATTTAT-ATTTTTATTAAC
1 ATTTATAATTTTTATT--C
*
31105630 ATTTAATAATTTTTATTT
1 ATTT-ATAATTTTTATTC
31105648 ATTTATAATTTTTA-TC
1 ATTTATAATTTTTATTC
31105664 ATTT
1 ATTT
31105668 TGTCACATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.15
17 10 0.29
18 8 0.24
19 2 0.06
20 9 0.26
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTATAATTTTTATTC
Found at i:31108910 original size:27 final size:27
Alignment explanation
Indices: 31108802--31108904 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
31108792 TAACAGTCAG
*
31108802 TTTACCCTATGGGGGGTATTTCGATAAT
1 TTTACCC-ATCGGGGGTATTTCGATAAT
* *
31108830 TTTACCTATCAGGGGTATTTCGATAAT
1 TTTACCCATCGGGGGTATTTCGATAAT
* **
31108857 TTTACCCTTCTAGGGTATTTCGATAAT
1 TTTACCCATCGGGGGTATTTCGATAAT
31108884 TTTACCCATCGGGGGTATTTC
1 TTTACCCATCGGGGGTATTTC
31108905 AGTAATGTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 59 0.91
28 6 0.09
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTACCCATCGGGGGTATTTCGATAAT
Found at i:31110387 original size:25 final size:25
Alignment explanation
Indices: 31110349--31110402 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
31110339 TGAACCACTG
* *
31110349 ACCTCTTTATCACACC-AGTGATGCC
1 ACCTCCTTACCACACCTA-TGATGCC
*
31110374 ACCTCCTTACCACACCTATGTTGCC
1 ACCTCCTTACCACACCTATGATGCC
31110399 ACCT
1 ACCT
31110403 TGCCACTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.22, C:0.41, G:0.09, T:0.28
Consensus pattern (25 bp):
ACCTCCTTACCACACCTATGATGCC
Found at i:31115313 original size:19 final size:20
Alignment explanation
Indices: 31115289--31115337 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
31115279 ATACGCCAAG
31115289 AGAAGCTC-AAAAGTTAAAC
1 AGAAGCTCGAAAAGTTAAAC
* *
31115308 AGAAGCTCGTAAGAGTTTAAC
1 AGAAGCTCG-AAAAGTTAAAC
31115329 AGAAGCTCG
1 AGAAGCTCG
31115338 TAAGAGCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 8 0.31
21 18 0.69
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.18
Consensus pattern (20 bp):
AGAAGCTCGAAAAGTTAAAC
Found at i:31115329 original size:21 final size:21
Alignment explanation
Indices: 31115300--31115343 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
31115290 GAAGCTCAAA
31115300 AGTTAAACAGAAGCTCGTAAG
1 AGTTAAACAGAAGCTCGTAAG
*
31115321 AGTTTAACAGAAGCTCGTAAG
1 AGTTAAACAGAAGCTCGTAAG
31115342 AG
1 AG
31115344 CTGAACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (21 bp):
AGTTAAACAGAAGCTCGTAAG
Found at i:31115350 original size:21 final size:21
Alignment explanation
Indices: 31115305--31115350 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
31115295 TCAAAAGTTA
* *
31115305 AACAGAAGCTCGTAAGAGTTT
1 AACAGAAGCTCGTAAGAGCTG
31115326 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
31115347 AACA
1 AACA
31115351 AAAAGTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:31117444 original size:5 final size:5
Alignment explanation
Indices: 31117405--31117475 Score: 87
Period size: 5 Copynumber: 14.6 Consensus size: 5
31117395 TTTTTATGTT
*
31117405 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTA-A TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
31117453 TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTA
31117476 AATAAACTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
3 1 0.02
4 12 0.21
5 41 0.71
7 4 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:31117451 original size:34 final size:36
Alignment explanation
Indices: 31117405--31117473 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
31117395 TTTTTATGTT
31117405 TTATATATATTAT-TT-TATTATATAATATAATATA
1 TTATATATATTATATTATATTATATAATATAATATA
* *
31117439 TTATAT-TAATTATATTATATTATATTATATTATAT
1 TTATATAT-ATTATATTATATTATATAATATAATAT
31117474 TAAATAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 11 0.37
35 2 0.07
36 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (36 bp):
TTATATATATTATATTATATTATATAATATAATATA
Found at i:31117474 original size:34 final size:30
Alignment explanation
Indices: 31117405--31117475 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
31117395 TTTTTATGTT
*
31117405 TTATA-TATATTATTTTATTATATAATATA
1 TTATATTATATTATTATATTATATAATATA
*
31117434 ATATATTATATTAATTATATTATAT--TATA
1 TTATATTATATT-ATTATATTATATAATATA
31117463 TTATATTATATTA
1 TTATATTATATTA
31117476 AATAAACTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 1 0.03
29 19 0.51
30 6 0.16
31 11 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
TTATATTATATTATTATATTATATAATATA
Found at i:31118106 original size:23 final size:23
Alignment explanation
Indices: 31118072--31118115 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
31118062 TATGGCAAGA
31118072 AATTAATTAGAAAAG-AAGTATG
1 AATTAATTAGAAAAGTAAGTATG
31118094 AATTAAGTTAGAAAAGTAAGTA
1 AATTAA-TTAGAAAAGTAAGTA
31118116 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (23 bp):
AATTAATTAGAAAAGTAAGTATG
Found at i:31118393 original size:24 final size:23
Alignment explanation
Indices: 31118352--31118398 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
31118342 TATTCATGGG
31118352 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
31118376 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
31118399 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:31119370 original size:9 final size:9
Alignment explanation
Indices: 31119356--31119383 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
31119346 GAATGTGAAA
31119356 TGAATTGGT
1 TGAATTGGT
31119365 TGAATTGGT
1 TGAATTGGT
31119374 TGAATTGGT
1 TGAATTGGT
31119383 T
1 T
31119384 ATGTTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (9 bp):
TGAATTGGT
Found at i:31124748 original size:5 final size:5
Alignment explanation
Indices: 31124704--31124784 Score: 82
Period size: 5 Copynumber: 16.6 Consensus size: 5
31124694 ATTTTTATGT
*
31124704 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTATA TTA-A
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
*
31124752 TTATA GTATA TTATA TTATA TTAT- TATATA TTA
1 TTATA TTATA TTATA TTATA TTATA T-TATA TTA
31124785 AATAAACTAA
Statistics
Matches: 64, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
3 1 0.02
4 13 0.20
5 45 0.70
6 1 0.02
7 4 0.06
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:31124772 original size:34 final size:33
Alignment explanation
Indices: 31124704--31124780 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 33
31124694 ATTTTTATGT
*
31124704 TTATATATATTAT-TTTATTATATAATATAATA
1 TTATATATATTATATTAATTATATAATATAATA
*
31124736 -TAT-TATATTATATTAATTATAGT-ATATTATA
1 TTATATATATTATATTAATTATA-TAATATAATA
31124767 TTATAT-TATTATAT
1 TTATATATATTATAT
31124781 ATTAAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
30 8 0.21
31 18 0.46
32 12 0.31
33 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
TTATATATATTATATTAATTATATAATATAATA
Found at i:31124782 original size:34 final size:33
Alignment explanation
Indices: 31124704--31124785 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 33
31124694 ATTTTTATGT
*
31124704 TTATATATATTATTTTATTATATAATATAATATA
1 TTATATATATTA-ATTATTATATAATATAATATA
* *
31124738 TTATATTATATTAATTA-TAGTATATTATATTATA
1 TTATA-TATATTAATTATTA-TATAATATAATATA
31124772 TTATTATATATTAA
1 TTA-TATATATTAA
31124786 ATAAACTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.05
34 31 0.74
35 9 0.21
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (33 bp):
TTATATATATTAATTATTATATAATATAATATA
Found at i:31125415 original size:23 final size:23
Alignment explanation
Indices: 31125381--31125424 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
31125371 TATGGCAAGA
31125381 AATTAATTAGAAAAG-AAGTATG
1 AATTAATTAGAAAAGTAAGTATG
31125403 AATTAAGTTAGAAAAGTAAGTA
1 AATTAA-TTAGAAAAGTAAGTA
31125425 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (23 bp):
AATTAATTAGAAAAGTAAGTATG
Found at i:31125701 original size:24 final size:23
Alignment explanation
Indices: 31125660--31125706 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
31125650 TATTCATGGG
31125660 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
31125684 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
31125707 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:31126212 original size:4 final size:4
Alignment explanation
Indices: 31126193--31126238 Score: 74
Period size: 4 Copynumber: 11.2 Consensus size: 4
31126183 AATTGAATTA
*
31126193 GTAT GTAAT ATAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GT-AT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
31126239 AATTTAAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
4 36 0.92
5 3 0.08
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:31131377 original size:22 final size:21
Alignment explanation
Indices: 31131347--31131388 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
31131337 TTGAACTAAA
31131347 ATGGTAATTTCGTAAATATTG
1 ATGGTAATTTCGTAAATATTG
* *
31131368 ATGGTTAATTTTGTTAATATT
1 ATGG-TAATTTCGTAAATATT
31131389 TTATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (21 bp):
ATGGTAATTTCGTAAATATTG
Found at i:31131549 original size:17 final size:18
Alignment explanation
Indices: 31131529--31131567 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
31131519 TTAAAATATT
31131529 TAATT-TAAAAAAATTAA
1 TAATTATAAAAAAATTAA
31131546 TAATTAAATAAAAAAATTAA
1 TAATT--ATAAAAAAATTAA
31131566 TA
1 TA
31131568 GTTAGACGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
20 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAATTATAAAAAAATTAA
Found at i:31134343 original size:153 final size:151
Alignment explanation
Indices: 31134070--31135166 Score: 1446
Period size: 153 Copynumber: 7.3 Consensus size: 151
31134060 GTTTTTATTG
* * *
31134070 AAAGTAATAAAATCCGGTAAAAAAATACGAATAAAGGGCCGAAAT-AAGGTTTTTTTAAAATTTA
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTT-AAATTTA
* *
31134134 TTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
65 TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
*
31134199 TTCGAAAATATTATATTTTTTA
130 TTAGAAAATATTATATTTTTTA
* * *
31134221 AAAGTAATAAAATCCGGAGAAAAAAATA-GAAACAAATGACCTAAATAATAG-TTTTTTTAAATT
1 AAAGTAATAAAATCCGG-GAAAAAAATACG-AACAAAGGGCCGAAATAA-AGATTTTTTTAAATT
*
31134284 TATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATATAAAAT-AT-
63 TATTT-AAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* *
31134347 AAA--A-ATAATA-TAT-TTTTATTG
127 AAATTAGAAAATATTATATTTT-TTA
* *
31134368 AAAGTAATAAAAT-CTGG-AAAAAATACGAATAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
* * *
31134431 TTAAAAACAC--TAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAATT
66 TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
31134494 TAGAAAATA--ATATTTTTT-
131 TAGAAAATATTATATTTTTTA
* * ** *
31134512 TAAGTAATAAAATCCATGG-AAAAAATACGAACAAAGGGCCGAAATGAGGGTTTTTTTTAAATTT
1 AAAGTAATAAAATCC-GGGAAAAAAATACGAACAAAGGGCCGAAAT-AAAGATTTTTTTAAATTT
** *
31134576 ATTTTAAAAACACAGTAAATTAATACATTTCAAACATAACATACTAAAATAATGTAAAGTAATAA
64 A-TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
*
31134641 AATTATAAAATATTATATTTTTTA
128 AATTAGAAAATATTATATTTTTTA
*
31134665 AAAGTAATAAAATCCGGGGAAAAAATACGAACAAAGGGCCGAAATAATAG-TTTTTTTAAAATTT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAA-AGATTTTTTT-AAATTT
*
31134729 ATTTAAAAAACACAGTAAATTAATACATTTAAAACATAATGTACTAAAATAATGTAAAATAATAA
64 ATTT-AAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* *
31134794 AATTAGAAAATAGTATATTTTTTT
128 AATTAGAAAATATTATATTTTTTA
* * * *
31134818 AAAGTAATAAACTCTAGGGAAAAGAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTA
1 AAAGTAATAAAATC-CGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTA
* * * *
31134883 TTTAAAAAAACACTAAATTAATACATTTCAAACTTGATGTACTAAAATAATGTAAAATAATAAAA
65 TTTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
* *
31134948 TTAGAAAATAATATATTTTTATTG
130 TTAGAAAATATTATA-TTTT-TTA
* *
31134972 AAAGTAATAAAATCCGGGGAAAAAATACTAACAAAGGGCCGAAATAAAGATTTTTTT-AATTTAT
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
* * * *
31135036 TTAAAAACACATTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAATAA-AAAAT
66 TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
31135100 TAGAAAATATTATATTTTTTTA
131 TAGAAAATATTATA-TTTTTTA
* * * *
31135122 AAAGTAATAAAATCTGGG-AAAAAATACGAATAGAGGGCCAAAATA
1 AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATA
31135167 CTAACAATTG
Statistics
Matches: 841, Mismatches: 74, Indels: 64
0.86 0.08 0.07
Matches are distributed among these distances:
141 44 0.05
142 2 0.00
143 12 0.01
144 51 0.06
145 8 0.01
146 43 0.05
147 34 0.04
148 16 0.02
149 23 0.03
150 74 0.09
151 44 0.05
152 185 0.22
153 251 0.30
154 54 0.06
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.31
Consensus pattern (151 bp):
AAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTAT
TTAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAAT
TAGAAAATATTATATTTTTTA
Found at i:31134604 original size:444 final size:452
Alignment explanation
Indices: 31134061--31135151 Score: 1597
Period size: 444 Copynumber: 2.4 Consensus size: 452
31134051 ATTTAGTGTG
*
31134061 TTTTTATTGAAAGTAATAAAATCCGGTAAAAAAATACGAATAAAGGGCCGAAATAAGGTTTTTTT
1 TTTTTATT-AAAGTAATAAAATCCGG--AAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTT
* *
31134126 AAAATTTATTTAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
63 TAAATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
*
31134191 TAATAAAATTCGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGAGAAAAAAATA-GAAACA
128 TAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGG-GAAAAAAATACG-AACA
* * *
31134255 AATGACCTAAATAATAGTTTTTTT-AAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAA
191 AAGGACCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAA
*
31134319 CATAATGTACTAAAATAATATAAAAT-AT-AAA-A-ATAATA-TAT-TTTTATTGAAAGTAATAA
256 CATAATGTACTAAAATAATATAAAATAATAAAATAGAAAATAGTATATTTT-TTGAAAGTAATAA
*
31134378 AATCT-GGAAAA-AATACGAATAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTT-AAAAACA
320 AATCTAGGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTTAAAAAACA
*
31134440 CTAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAATTTAGAAAAT-A-
385 CTAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAAT
31134503 ATA
450 ATA
*
31134506 TTTTT-TT-AAGTAATAAAATCCATGGAAAAAATACGAACAAAGGGCCGAAATGAGGGTTTTTTT
1 TTTTTATTAAAGTAATAAAATCC--GGAAAAAATACGAACAAAGGGCCGAAAT-AAGGTTTTTTT
* **
31134569 TAAATTTATTTTAAAAACACAGTAAATTAATACATTTCAAACATAACATACTAAAATAATGTAAA
63 TAAATTTA-TTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
* * *
31134634 GTAATAAAATTATAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGGAAAAAATACGAACAA
127 ATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAA
*
31134699 AGGGCCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAAC
192 AGGACCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAAC
* *
31134764 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAGTAATAAA
257 ATAATGTACTAAAATAATATAAAATAATAAAA-TAGAAAATAGTATATTTTTTGAAAGTAATAAA
* *
31134829 CTCTAGGGAAAAGAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAAAC
321 ATCTA-GGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTT-AAAAAAC
* * * *
31134894 ACTAAATTAATACATTTCAAACTTGATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAA
384 ACTAAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAA
31134959 TATA
449 TATA
* * *
31134963 TTTTTATTGAAAGTAATAAAATCCGGGGAAAAAATACTAACAAAGGGCCGAAATAAAGATTTTTT
1 TTTTTATT-AAAGTAATAAAATCC--GGAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTT
* * * *
31135028 T-AATTTATTTAAAAACACATTAAATTAATACATTTAAAATATAATGTATTAAAATAATGTAAAA
63 TAAATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
*
31135092 TAA-AAAATTAGAAAATATTATATTTTTTTAAAAGTAATAAAATCTGGG-AAAAAATACGAA
128 TAATAAAATTAGAAAATATTATA-TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAA
31135152 TAGAGGGCCA
Statistics
Matches: 581, Mismatches: 41, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
442 39 0.07
443 51 0.09
444 166 0.29
445 7 0.01
446 3 0.01
448 1 0.00
449 5 0.01
450 19 0.03
451 4 0.01
452 6 0.01
453 42 0.07
455 64 0.11
456 31 0.05
457 85 0.15
458 8 0.01
459 9 0.02
460 41 0.07
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.32
Consensus pattern (452 bp):
TTTTTATTAAAGTAATAAAATCCGGAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTTAA
ATTTATTTAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAA
TAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGA
CCGAAATAATAGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTTAAAACATAA
TGTACTAAAATAATATAAAATAATAAAATAGAAAATAGTATATTTTTTGAAAGTAATAAAATCTA
GGAAAAGAATACGAACAAAGGGCCGAAATAAAGATTTTTTTAAATTTATTTAAAAAACACTAAAT
GAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAATATA
Found at i:31135204 original size:22 final size:22
Alignment explanation
Indices: 31135176--31135218 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
31135166 ACTAACAATT
*
31135176 GGTGCCGCCTCTACCATAGGCG
1 GGTGCCGCCTCTACCACAGGCG
*
31135198 GGTGCCGCCTCTGCCACAGGC
1 GGTGCCGCCTCTACCACAGGC
31135219 ACCAAAAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.40, G:0.33, T:0.16
Consensus pattern (22 bp):
GGTGCCGCCTCTACCACAGGCG
Found at i:31136809 original size:21 final size:22
Alignment explanation
Indices: 31136783--31136824 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
31136773 GGAGTTTTTG
31136783 GAAAGGAAAA-GAGAAAGGAAA
1 GAAAGGAAAATGAGAAAGGAAA
*
31136804 GAAAGGAAAATGAGAAGGGAA
1 GAAAGGAAAATGAGAAAGGAA
31136825 GGGACTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (22 bp):
GAAAGGAAAATGAGAAAGGAAA
Found at i:31140570 original size:27 final size:27
Alignment explanation
Indices: 31140540--31140605 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
31140530 CTAGACTAAT
*
31140540 GTAAAATGACTGTTATGCCCCCACGTG
1 GTAAAATGACTGTTATACCCCCACGTG
* *
31140567 GTAAAATGACTGTTATACCCCTACGTT
1 GTAAAATGACTGTTATACCCCCACGTG
*
31140594 ATAAAATGACTG
1 GTAAAATGACTG
31140606 CATGCTCTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (27 bp):
GTAAAATGACTGTTATACCCCCACGTG
Found at i:31140923 original size:33 final size:31
Alignment explanation
Indices: 31140886--31140954 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 31
31140876 TGTTACTGTC
31140886 ACTGTAATGGGCTAAGG-CCACACTGATACTGA
1 ACTGTAATGGGCTAAGGCCCA-ACTGA-ACTGA
31140918 TACTGTAATGGGCTAAGGCCCAACTGAACTGA
1 -ACTGTAATGGGCTAAGGCCCAACTGAACTGA
31140950 ACTGT
1 ACTGT
31140955 TATTGAATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
31 5 0.14
32 5 0.14
33 22 0.63
34 3 0.09
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (31 bp):
ACTGTAATGGGCTAAGGCCCAACTGAACTGA
Found at i:31145686 original size:8 final size:8
Alignment explanation
Indices: 31145673--31145700 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
31145663 TATACTAAAC
31145673 AATAAAAT
1 AATAAAAT
31145681 AATAAAAT
1 AATAAAAT
31145689 AATAAAAT
1 AATAAAAT
31145697 AATA
1 AATA
31145701 TTTAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AATAAAAT
Found at i:31146725 original size:26 final size:26
Alignment explanation
Indices: 31146695--31146753 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
31146685 ATGAAAGCTC
31146695 CCATTTTAGATACGCCACAAAGGCTT
1 CCATTTTAGATACGCCACAAAGGCTT
* * *
31146721 TCATTTCAGATACGGCACAAAGGCTT
1 CCATTTTAGATACGCCACAAAGGCTT
31146747 CCATTTT
1 CCATTTT
31146754 TTGACGTGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
CCATTTTAGATACGCCACAAAGGCTT
Found at i:31153090 original size:13 final size:13
Alignment explanation
Indices: 31153072--31153098 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31153062 GAAATATGCC
31153072 AAAATTGCTGGAA
1 AAAATTGCTGGAA
31153085 AAAATTGCTGGAA
1 AAAATTGCTGGAA
31153098 A
1 A
31153099 TTGCTAAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22
Consensus pattern (13 bp):
AAAATTGCTGGAA
Found at i:31160555 original size:13 final size:13
Alignment explanation
Indices: 31160537--31160562 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31160527 TGTGAAGTGC
31160537 AAAAAAAATTCAA
1 AAAAAAAATTCAA
31160550 AAAAAAAATTCAA
1 AAAAAAAATTCAA
31160563 GTTGCATTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:31160625 original size:18 final size:18
Alignment explanation
Indices: 31160602--31160643 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
31160592 TGAAGTATTG
31160602 AAAAAAATGAAAATTCAA
1 AAAAAAATGAAAATTCAA
*
31160620 AAAAAAATGAAACTTCAA
1 AAAAAAATGAAAATTCAA
31160638 AAAAAA
1 AAAAAA
31160644 GTGTTGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAAATGAAAATTCAA
Found at i:31167432 original size:20 final size:20
Alignment explanation
Indices: 31167407--31167463 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
31167397 ATGTAATAGT
* *
31167407 CTAAGACAGATTTAATTGAA
1 CTAAGACACATTAAATTGAA
*
31167427 CTAAGACACATTAAATTGGCAG
1 CTAAGACACATTAAATT-G-AA
31167449 C-AAGACACATTAAAT
1 CTAAGACACATTAAAT
31167464 GGATGTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.47
21 15 0.47
22 2 0.06
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.25
Consensus pattern (20 bp):
CTAAGACACATTAAATTGAA
Found at i:31180650 original size:20 final size:20
Alignment explanation
Indices: 31180593--31180640 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
31180583 TTTAGCTCGG
** *
31180593 TTCAGCTCCCATGAGTTTAA
1 TTCAGCTCAGATGAGCTTAA
*
31180613 TTCAGCTCAGATGTGCTTAA
1 TTCAGCTCAGATGAGCTTAA
31180633 TTCAGCTC
1 TTCAGCTC
31180641 GTTTGAGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (20 bp):
TTCAGCTCAGATGAGCTTAA
Found at i:31183342 original size:18 final size:18
Alignment explanation
Indices: 31183319--31183376 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
31183309 TGGAGAAATG
* *
31183319 AAAGAAAAATACATTGAA
1 AAAGAAAAAGAAATTGAA
*
31183337 AAAGAAAAAGAAATTGCA
1 AAAGAAAAAGAAATTGAA
* *
31183355 AAAGAAAAGGGAATTGAA
1 AAAGAAAAAGAAATTGAA
31183373 AAAG
1 AAAG
31183377 TGAGTGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.66, C:0.03, G:0.19, T:0.12
Consensus pattern (18 bp):
AAAGAAAAAGAAATTGAA
Found at i:31183375 original size:30 final size:29
Alignment explanation
Indices: 31183340--31183420 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
31183330 CATTGAAAAA
*
31183340 GAAAAAGAAATTGCAAAAG-AAAAGGGAATT
1 GAAAAAGAAATTG-AAAAGAAAAAGAG-ATT
** *
31183370 GAAAAAGTGAGTGAAAAGGAAAAAGAGATT
1 GAAAAAGAAATTGAAAA-GAAAAAGAGATT
31183400 GAAAAAGAAATTGAAAGAGAA
1 GAAAAAGAAATTGAAA-AGAA
31183421 GAAAAAGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
29 4 0.10
30 30 0.73
31 7 0.17
ACGTcount: A:0.60, C:0.01, G:0.26, T:0.12
Consensus pattern (29 bp):
GAAAAAGAAATTGAAAAGAAAAAGAGATT
Done.