Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 110 of 208
Found at i:36190166 original size:61 final size:61
Alignment explanation
Indices: 36190099--36190260 Score: 297
Period size: 61 Copynumber: 2.7 Consensus size: 61
36190089 GGTTTTTACA
36190099 TTAATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAATGATAAATCAGGGTAAGAGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAATGATAAATCAGGGTAAGAGTTT
*
36190160 TTAATTAAATTAGGTTAGGGTAAGGGATTTCAAATAAAATGATAAATCAGGGTAAGAGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAATGATAAATCAGGGTAAGAGTTT
* *
36190221 TTAATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAAT
1 TTAATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAAT
36190261 AGGTTAGGGT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 97 1.00
ACGTcount: A:0.40, C:0.02, G:0.22, T:0.36
Consensus pattern (61 bp):
TTAATTAAATTAGGTTAGGGTTAGGGATTTCAAATAAAATGATAAATCAGGGTAAGAGTTT
Found at i:36190180 original size:29 final size:29
Alignment explanation
Indices: 36190099--36191495 Score: 452
Period size: 23 Copynumber: 55.3 Consensus size: 29
36190089 GGTTTTTACA
36190099 TTAATTAAATTAGGTTAGGGTTAGGGATTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TTT
** * ** * * *
36190129 CAAATAAAATGATAAATCAGGGTAAGAGTTT
1 TTAATTAAAT--TAGGTTAGGGTTAGGGTTT
*
36190160 TTAATTAAATTAGGTTAGGGTAAGGGATTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TTT
** * ** * * *
36190190 CAAATAAAATGATAAATCAGGGTAAGAGTTT
1 TTAATTAAAT--TAGGTTAGGGTTAGGGTTT
*
36190221 TTAATTAAATTAGGTTAGGGTTAGGGATT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190250 TTAATTAAAATAGGTTAGGGTTAGGG-TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* ** *
36190278 TTCATGTAAAAAAGGTTAGGGTTGGGGTTT
1 TTAAT-TAAATTAGGTTAGGGTTAGGGTTT
36190308 TTAATTAAATTAGGTTA-GGTTAGGGATTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TTT
**
36190337 CAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTT
1 ---TT-AATTAAATTA-GGTTAGGGTTAGGGTTT
** *
36190371 TTAATTAAATTAAATTA-GCTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190399 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190422 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190445 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190468 TTAATTAAGTTA---T---GTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190491 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
** *
36190514 TTAATTAAATTAAATTA-GCTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190542 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
** *
36190565 TTAATTAAATTAAATTA-GCTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190593 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190616 TTAATT-AA----GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* * *
36190639 TTAATTTAATTAAGTTA-GGTTAGGTTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190667 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190690 TTAATTTAAA-T----TA-GGTTAGGG-TT
1 TTAA-TTAAATTAGGTTAGGGTTAGGGTTT
36190713 TTAATTAAATTA-G-----GTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* * *
36190736 TTAACTAAGTTATGTTA-GG-----GTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190759 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190782 TTAATT-AA--A--TTA-GGTTAGGG-TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190804 TTAATT-AAGTAGGGTTA--G----GGTTT
1 TTAATTAAATTA-GGTTAGGGTTAGGGTTT
*
36190827 TTAATT-AA--G---TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190850 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* * *
36190873 TTAATTTAATCAAGTTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190901 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36190924 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190947 TTAATTAAGTTA---T---GTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36190970 TTAATT-AA----GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* *
36190993 TTAATTTAATTAAGTTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191021 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191044 TTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191073 TTAATT--A--A-G-TAGGGTTAGGG-TT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191095 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* **
36191118 TTAATT-AA--G---TAGGGTTAAAGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191141 TTAATT--A--A-G-TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36191164 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* *
36191187 TTAATTTAATTAAGTTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36191215 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191238 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191261 TTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191290 TTAATT--A--A-G-TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191313 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36191336 TTAATT-AA--G---TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36191359 TTAATT--A--A-GTTA-TGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
* *
36191382 TTAATTTAATTAAGTTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191410 TTAATT-AA--A--TTA-GGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
*
36191433 TTAATT-AA--G---TAGGGTTAGGGTTT
1 TTAATTAAATTAGGTTAGGGTTAGGGTTT
36191456 TTAATTAAATTAGGTTAGGGTTAGGGTTTT
1 TTAATTAAATTAGGTTAGGGTTAGGG-TTT
*
36191486 TTAATCAAAT
1 TTAATTAAAT
36191496 AATGTCAAAA
Statistics
Matches: 1141, Mismatches: 97, Indels: 258
0.76 0.06 0.17
Matches are distributed among these distances:
17 2 0.00
18 5 0.00
19 1 0.00
20 2 0.00
21 2 0.00
22 52 0.05
23 573 0.50
24 52 0.05
25 10 0.01
26 13 0.01
27 13 0.01
28 172 0.15
29 130 0.11
30 43 0.04
31 22 0.02
32 25 0.02
33 8 0.01
34 8 0.01
35 8 0.01
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (29 bp):
TTAATTAAATTAGGTTAGGGTTAGGGTTT
Found at i:36190212 original size:32 final size:32
Alignment explanation
Indices: 36190115--36190215 Score: 109
Period size: 32 Copynumber: 3.2 Consensus size: 32
36190105 AAATTAGGTT
*
36190115 AGGGTTAGGGATTTCAAATAAAATGATAAATC
1 AGGGTAAGGGATTTCAAATAAAATGATAAATC
* ** * ** *
36190147 AGGGTAAGAG-TTTTTAATTAAAT--TAGGTT
1 AGGGTAAGGGATTTCAAATAAAATGATAAATC
36190176 AGGGTAAGGGATTTCAAATAAAATGATAAATC
1 AGGGTAAGGGATTTCAAATAAAATGATAAATC
36190208 AGGGTAAG
1 AGGGTAAG
36190216 AGTTTTTAAT
Statistics
Matches: 51, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 12 0.24
30 10 0.20
31 10 0.20
32 19 0.37
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.30
Consensus pattern (32 bp):
AGGGTAAGGGATTTCAAATAAAATGATAAATC
Found at i:36190298 original size:58 final size:57
Alignment explanation
Indices: 36190223--36190361 Score: 181
Period size: 58 Copynumber: 2.4 Consensus size: 57
36190213 AAGAGTTTTT
** *
36190223 AATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
1 AATTAAAAAAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * *
36190281 -ATGTAAAAAAGGTTAGGGTTGGGGTTTTTAATTAAATTAGGTTAGGTTAGGGATTTC
1 AAT-TAAAAAAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGTTAGGGATTTC
**
36190338 AATTAAATTAGGTTAGGGTTAGGG
1 AATTAAAAAAGGTTAGGGTTAGGG
36190362 TTAGGGTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 32 0.46
58 38 0.54
ACGTcount: A:0.31, C:0.01, G:0.29, T:0.38
Consensus pattern (57 bp):
AATTAAAAAAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGTTAGGGATTTC
Found at i:36190358 original size:63 final size:62
Alignment explanation
Indices: 36190233--36190420 Score: 208
Period size: 63 Copynumber: 3.1 Consensus size: 62
36190223 AATTAAATTA
* * *
36190233 GGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC-ATGTAAA--A---AA
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGTTTTCAAT-TAAATTAGTTAG
* *
36190291 GGTTAGGGTTGGGGTTTTTAATTAAATTAGGTTAGGTTAGGGATTTCAATTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTCAATTAAATTA-GTTAG
** * * *
36190354 GGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTCAATTAAATTA-GTTAG
36190417 GGTT
1 GGTT
36190421 TTTAATTAAA
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
57 16 0.15
58 33 0.30
59 1 0.01
63 60 0.55
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.41
Consensus pattern (62 bp):
GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTCAATTAAATTAGTTAG
Found at i:36190404 original size:23 final size:24
Alignment explanation
Indices: 36190360--36191477 Score: 1191
Period size: 23 Copynumber: 46.4 Consensus size: 24
36190350 TTAGGGTTAG
36190360 GGTTAGGGTTTTTAATTAAATTAAATT
1 GGTTAGGGTTTTTAATTAAATT--A-T
* *
36190387 AGCTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
36190412 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
36190434 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190457 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
36190481 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
36190503 GGTTAGGGTTTTTAATTAAATTAAATT
1 GGTTAGGGTTTTTAATTAAATT--A-T
* *
36190530 AGCTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
36190555 -GTTAGGGTTTTTAATTAAATTAAATT
1 GGTTAGGGTTTTTAATTAAATT--A-T
* *
36190581 AGCTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
*
36190606 -GTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190629 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
* *
36190655 AGGTTAGGTTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
36190680 -GTTAGGGTTTTTAATTTAAATTA-
1 GGTTAGGGTTTTTAA-TTAAATTAT
36190703 GGTTAGGG-TTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
36190725 GGTTAGGGTTTTTAACTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
36190749 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
36190771 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
36190794 GGTTAGGG-TTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
* *
36190816 GGTTAGGGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190839 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
36190863 -GTTAGGGTTTTTAATTTAATCAAGTTA-
1 GGTTAGGGTTTTTAA-TT-A--AA-TTAT
*
36190890 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
36190914 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190936 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190960 -GTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
36190983 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
36191009 AGGTTAGGGTTTTTAATTAAATTA-
1 -GGTTAGGGTTTTTAATTAAATTAT
36191033 GGTTAGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
36191060 AGGGTTAGGGTTTTTAATT-AAGTAG
1 --GGTTAGGGTTTTTAATTAAATTAT
36191085 GGTTAGGG-TTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
36191107 GGTTAGGGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
** * *
36191130 GGTTAAAGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
*
36191153 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
36191177 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
*
36191203 AGGTTAGGGTTTTTAATTAAGTTAT
1 -GGTTAGGGTTTTTAATTAAATTAT
36191228 -GTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
36191250 GGTTAGGGTTTTTAATTAAATTAGGTT
1 GGTTAGGGTTTTTAATTAAATTA---T
* *
36191277 AGGGTTAGGGTTTTTAATT-AAGTAG
1 --GGTTAGGGTTTTTAATTAAATTAT
36191302 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
* *
36191325 GGTTAGGGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
*
36191348 GGTTAGGGTTTTTAATTAAGTTAT
1 GGTTAGGGTTTTTAATTAAATTAT
*
36191372 -GTTAGGGTTTTTAATTTAATTAAGTT
1 GGTTAGGGTTTTTAATTAAATT-A--T
36191398 AGGTTAGGGTTTTTAATTAAATTA-
1 -GGTTAGGGTTTTTAATTAAATTAT
* *
36191422 GGTTAGGGTTTTTAATT-AAGTAG
1 GGTTAGGGTTTTTAATTAAATTAT
36191445 GGTTAGGGTTTTTAATTAAATTA-
1 GGTTAGGGTTTTTAATTAAATTAT
36191468 GGTTAGGGTT
1 GGTTAGGGTT
36191478 AGGGTTTTTT
Statistics
Matches: 955, Mismatches: 63, Indels: 149
0.82 0.05 0.13
Matches are distributed among these distances:
21 4 0.00
22 60 0.06
23 634 0.66
24 38 0.04
25 8 0.01
26 9 0.01
27 7 0.01
28 161 0.17
29 34 0.04
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (24 bp):
GGTTAGGGTTTTTAATTAAATTAT
Found at i:36190454 original size:74 final size:74
Alignment explanation
Indices: 36190360--36191486 Score: 1080
Period size: 74 Copynumber: 15.6 Consensus size: 74
36190350 TTAGGGTTAG
* *
36190360 GGTTAGGGTTTTTAATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
36190425 ATTAAATTA
66 ATTAAATTA
*
36190434 GGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
36190494 ATTAAATTA
66 ATTAAATTA
* *
36190503 GGTTAGGGTTTTTAATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGG--TTT-
36190568 ATTAAATTAAATTA
63 -TT-AATTAAATTA
* * *
36190582 GCTTAGGGTTTTTAATTAAGTT--A-T--GTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
*
36190642 ATTTAATTA
66 ATTAAATTA
* * * * *
36190651 AGTTA-GGTTAGGTTT--TTTAATTAAGTTATGTTAGGGTTTTTAATTTAAATTAGGTTAGGG-T
1 GGTTAGGGTT---TTTAATTAAATTAAATTAGGTTAGGGTTTTTAA-TTAAGTTAGGTTAGGGTT
36190712 TTTAATTAAATTA
62 TTTAATTAAATTA
* * *
36190725 GGTTAGGGTTTTTAACTAAGTT--A-T--GTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
36190785 ATTAAATTA
66 ATTAAATTA
* *
36190794 GGTTAGGG-TTTTAATT-AAGT--A--GGGTTAGGGTTTTTAATTAAG-TAGGGTTAGGGTTTTT
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTTTT
*
36190852 AATTAAGTTA
65 AATTAAATTA
* * * * *
36190862 TGTTAGGGTTTTTAATTTAATCAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
36190927 ATTAAATTA
66 ATTAAATTA
* *
36190936 GGTTAGGGTTTTTAATTAAGTT--A-T--GTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
36190996 ATTTAATTAAGTTA
66 A-TT-A--AA-TTA
36191010 GGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATT--A--A-GTTA-GGTTAGGG
*
36191070 TTTTTAATT-AAGTA
60 TTTTTAATTAAATTA
**
36191084 GGGTTAGGG---TT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAG-TAGGGTTAAAGTTTT
1 -GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTTT
*
36191142 TAATT-AAGTA
64 TAATTAAATTA
* ** *
36191152 GGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTT---TTTAATTTAATTAAGTTAGGTTAGGGTT
1 -GGTTAGGGTTTTTAATTAAATTAAATTA-GGTTAGGGTT--TTTAATTAAGTTAGGTTAGGGTT
*
36191214 TTTAATTAAGTTA
62 TTTAATTAAATTA
*
36191227 TGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATT--A--A-GTTA-GGTTAGGG
*
36191287 TTTTTAATT-AAGTA
60 TTTTTAATTAAATTA
36191301 GGGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAG-TAGGGTTAGGGTTTT
1 -GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTA-GGTTAGGGTTTT
*
36191360 TAATTAAGTTA
64 TAATTAAATTA
* * * *
36191371 TGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTA
1 GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
*
36191436 ATT-AAGTA
66 ATTAAATTA
**
36191444 GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTT
1 -GGTTAGGGTTTTTAATTAAATTAAATTA-GGTTAGGGTTTTT
36191487 TAATCAAATA
Statistics
Matches: 906, Mismatches: 67, Indels: 159
0.80 0.06 0.14
Matches are distributed among these distances:
67 5 0.01
68 110 0.12
69 206 0.23
70 17 0.02
71 19 0.02
72 20 0.02
73 13 0.01
74 347 0.38
75 110 0.12
76 5 0.01
77 1 0.00
78 3 0.00
79 36 0.04
80 14 0.02
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.48
Consensus pattern (74 bp):
GGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTTTTA
ATTAAATTA
Found at i:36193651 original size:14 final size:15
Alignment explanation
Indices: 36193634--36193667 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
36193624 AATAAATATC
36193634 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
36193648 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
36193663 TAAAA
1 TAAAA
36193668 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:36193798 original size:28 final size:29
Alignment explanation
Indices: 36193766--36193821 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
36193756 TGAAAATATT
36193766 AAAAATTTTAAAATTAT-TTAAAAAAATA
1 AAAAATTTTAAAATTATCTTAAAAAAATA
*
36193794 AAAAATTTTAAAATTTTCTTAAAAAAAT
1 AAAAATTTTAAAATTATCTTAAAAAAAT
36193822 GAAATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAAATTTTAAAATTATCTTAAAAAAATA
Found at i:36193893 original size:22 final size:22
Alignment explanation
Indices: 36193863--36193904 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36193853 ATTTGGAGAT
*
36193863 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
36193885 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
36193905 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:36193935 original size:22 final size:22
Alignment explanation
Indices: 36193906--36193997 Score: 125
Period size: 22 Copynumber: 4.2 Consensus size: 22
36193896 ATTTGAGAGT
36193906 TTGAGAGAA-TTTTGAAAGGAAA
1 TTGAGAGAATTTTTG-AAGGAAA
* * *
36193928 TTAAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAGGAAA
36193950 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAATTTTTG-AAGGAAA
36193972 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAGGAAA
36193994 TTGA
1 TTGA
36193998 TATTGAATTT
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
21 4 0.06
22 50 0.79
23 9 0.14
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:36193955 original size:44 final size:44
Alignment explanation
Indices: 36193906--36193997 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
36193896 ATTTGAGAGT
*
36193906 TTGAGAGAA-TTTTGAAAGGAAATTAAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAAGG-AATTAAGAGAAATTTTGAAGGAAA
* *
36193950 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
36193994 TTGA
1 TTGA
36193998 TATTGAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 34 0.77
45 10 0.23
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
Found at i:36195516 original size:26 final size:28
Alignment explanation
Indices: 36195463--36195518 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
36195453 GCAATATGGA
* *
36195463 TGCTTAAATTACAAATTTTTATTTTAAT
1 TGCTTAAAATACAAATTTTTATTATAAT
36195491 TGCTTAAAATA-AAATTTTT-TTATAAT
1 TGCTTAAAATACAAATTTTTATTATAAT
36195517 TG
1 TG
36195519 GGTGACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 8 0.31
27 8 0.31
28 10 0.38
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (28 bp):
TGCTTAAAATACAAATTTTTATTATAAT
Found at i:36207367 original size:30 final size:26
Alignment explanation
Indices: 36207327--36207381 Score: 65
Period size: 30 Copynumber: 2.0 Consensus size: 26
36207317 CATAATTATT
36207327 ATTTTATTAAACTTTTGATATATTTTTTAG
1 ATTTTATTAAA--TTT-ATA-ATTTTTTAG
*
36207357 ATTTTTTTAAATTTATAATTTTTTA
1 ATTTTATTAAATTTATAATTTTTTA
36207382 AAAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 8 0.33
27 3 0.12
28 3 0.12
30 10 0.42
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.64
Consensus pattern (26 bp):
ATTTTATTAAATTTATAATTTTTTAG
Found at i:36210324 original size:19 final size:20
Alignment explanation
Indices: 36210300--36210339 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
36210290 TTCTCTTGAA
*
36210300 AATTGCAATTAA-AATATGT
1 AATTGCAATCAATAATATGT
*
36210319 AATTGCAGTCAATAATATGT
1 AATTGCAATCAATAATATGT
36210339 A
1 A
36210340 GTAATTACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.35
Consensus pattern (20 bp):
AATTGCAATCAATAATATGT
Found at i:36213177 original size:18 final size:18
Alignment explanation
Indices: 36213146--36213198 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
36213136 ATTCACCAAA
*
36213146 ACCCAATCCAAACCCAAGT
1 ACCCAA-CCCAACCCAAGT
** *
36213165 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAGT
36213183 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
36213199 CCCAATTATA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.42, C:0.45, G:0.02, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAGT
Found at i:36213328 original size:9 final size:9
Alignment explanation
Indices: 36213314--36213362 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
36213304 GTAGTGATTC
36213314 AATTCGGTT
1 AATTCGGTT
*
36213323 AATTCGGGT
1 AATTCGGTT
36213332 AATTCGGTT
1 AATTCGGTT
36213341 AATTCGGTT
1 AATTCGGTT
*
36213350 AATTCAGTT
1 AATTCGGTT
36213359 AATT
1 AATT
36213363 TGGCTAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:36213361 original size:27 final size:27
Alignment explanation
Indices: 36213314--36213371 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
36213304 GTAGTGATTC
* *
36213314 AATTCGGTTAATTCGGGTAATTCGGTT
1 AATTCGGTTAATTCAGGTAATTCGGCT
* *
36213341 AATTCGGTTAATTCAGTTAATTTGGCT
1 AATTCGGTTAATTCAGGTAATTCGGCT
36213368 AATT
1 AATT
36213372 TTTAACCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (27 bp):
AATTCGGTTAATTCAGGTAATTCGGCT
Found at i:36213370 original size:18 final size:18
Alignment explanation
Indices: 36213314--36213371 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
36213304 GTAGTGATTC
*
36213314 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGCT
*
36213332 AATTCGGTTAATTCGGTT
1 AATTCGGTTAATTCGGCT
* *
36213350 AATTCAGTTAATTTGGCT
1 AATTCGGTTAATTCGGCT
36213368 AATT
1 AATT
36213372 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.43
Consensus pattern (18 bp):
AATTCGGTTAATTCGGCT
Found at i:36221283 original size:20 final size:18
Alignment explanation
Indices: 36221236--36221284 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
36221226 CAAGATAAAC
36221236 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
36221253 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
36221273 ATTAAATTAATA
1 ATTAAATTAATA
36221285 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:36223510 original size:51 final size:51
Alignment explanation
Indices: 36223418--36223535 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
36223408 ATAAAAATGG
*
36223418 TGAAAATGGATAAATGAGAAACATTTGGAAATGATTATGGTTTTATCCAAAA
1 TGAAAATGGA-AAATGAGAAACATTTGGAAATGAATATGGTTTTATCCAAAA
* * *
36223470 TGAAAATGGAGAAATGA-AATCATTTGGAAATGAATGTGGTTTTCTCCAAAA
1 TGAAAATGGA-AAATGAGAAACATTTGGAAATGAATATGGTTTTATCCAAAA
*
36223521 TAAAAAT-GAAAATGA
1 TGAAAATGGAAAATGA
36223536 TCTGGAAATG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 6 0.10
50 2 0.03
51 36 0.60
52 16 0.27
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (51 bp):
TGAAAATGGAAAATGAGAAACATTTGGAAATGAATATGGTTTTATCCAAAA
Found at i:36233010 original size:33 final size:33
Alignment explanation
Indices: 36232973--36233046 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
36232963 ATTATTATAA
* *
36232973 GATATTATCTTTTAGAAATTTGATTCTTAATAG
1 GATATTATCTCTTAGAAATTTGATTCCTAATAG
* * *
36233006 GATATCATCTCTTAGGAATTTGATTCCTAATGG
1 GATATTATCTCTTAGAAATTTGATTCCTAATAG
36233039 GATATTAT
1 GATATTAT
36233047 AGGATATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (33 bp):
GATATTATCTCTTAGAAATTTGATTCCTAATAG
Found at i:36236666 original size:56 final size:56
Alignment explanation
Indices: 36236575--36236727 Score: 227
Period size: 56 Copynumber: 2.7 Consensus size: 56
36236565 AGGAGGGTAT
* *
36236575 TAAGATATTATTCTGGGATATTATATTTTAACAATTTGATTCTTAATAGGATATTA
1 TAAGATATTATTCTGGGATATTATATTTTAGCAATTTGATTCCTAATAGGATATTA
* * * *
36236631 TAAGATATTATTATGGGATATTATCTCTTAGCAATTTGATTCCTAATGGGATATTA
1 TAAGATATTATTCTGGGATATTATATTTTAGCAATTTGATTCCTAATAGGATATTA
*
36236687 T-AGAATATTATTCTGGGATATTATTTTTTAGCAATTTGATT
1 TAAG-ATATTATTCTGGGATATTATATTTTAGCAATTTGATT
36236728 TCTACGTAAC
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
55 2 0.02
56 85 0.98
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46
Consensus pattern (56 bp):
TAAGATATTATTCTGGGATATTATATTTTAGCAATTTGATTCCTAATAGGATATTA
Found at i:36239190 original size:31 final size:31
Alignment explanation
Indices: 36239155--36239217 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
36239145 TAAAGTTAGA
*
36239155 TTTAACATAAAAGTCGAATAGTTAAATTCAT
1 TTTAACATAAAAGTCGAATAATTAAATTCAT
36239186 TTTAACATAAAAGTCGAATAATTAAATTCAT
1 TTTAACATAAAAGTCGAATAATTAAATTCAT
36239217 T
1 T
36239218 CTATTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (31 bp):
TTTAACATAAAAGTCGAATAATTAAATTCAT
Found at i:36255134 original size:22 final size:22
Alignment explanation
Indices: 36255106--36255147 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36255096 AGGACGAAAC
*
36255106 AGGGTGTGCGTGTTGTGACACA
1 AGGGTGTGCGTGTTGCGACACA
*
36255128 AGGGTGTGTGTGTTGCGACA
1 AGGGTGTGCGTGTTGCGACA
36255148 TAGACACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.12, G:0.43, T:0.29
Consensus pattern (22 bp):
AGGGTGTGCGTGTTGCGACACA
Found at i:36256515 original size:26 final size:24
Alignment explanation
Indices: 36256479--36256528 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
36256469 CTGTTGTAAC
*
36256479 TTTTTTAGTTAGTTTTATTTTAATTA
1 TTTTTTAGTTA-TTTT-TTATAATTA
*
36256505 TTTTTTTGTTATTTTTTATAATTA
1 TTTTTTAGTTATTTTTTATAATTA
36256529 CCTTGTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 4 0.18
26 10 0.45
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (24 bp):
TTTTTTAGTTATTTTTTATAATTA
Found at i:36258837 original size:20 final size:20
Alignment explanation
Indices: 36258812--36258852 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36258802 GTCCAGTAAG
*
36258812 TTAGGGCATGATATCTTGAA
1 TTAGGGCACGATATCTTGAA
36258832 TTAGGGCACGATATCTTGAA
1 TTAGGGCACGATATCTTGAA
36258852 T
1 T
36258853 CCTCGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34
Consensus pattern (20 bp):
TTAGGGCACGATATCTTGAA
Found at i:36261318 original size:94 final size:94
Alignment explanation
Indices: 36261220--36261573 Score: 424
Period size: 94 Copynumber: 3.8 Consensus size: 94
36261210 GACCTATTGA
* * * *
36261220 AACTTCAGGGAGATAAGATTTGCTATGATAACTTCAAT-TCAACCCACTACAACTTTAGGGGTGT
1 AACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCT-GACCCACTACAACTTTAGGGGTAT
* * * *
36261284 -GAGATTCGTAGTTTTATTTTGCTCCACTAT
65 AG-GATTTGTAGCTTTATCTTGCTCCACTAC
* * **
36261314 AACTTTAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCTACTGTAACTTTAGGGGTATA
1 AACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTTAGGGGTATA
*
36261379 TGATTTGTAGCTTTATCTTGCTCCACTAC
66 GGATTTGTAGCTTTATCTTGCTCCACTAC
* * ** * *
36261408 AACTTCAAGGAGATAAGGTTCATTATGGTAACTTTAATCTGACCCACTACAACTTTAAGGGTATA
1 AACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTTAGGGGTATA
* *
36261473 GGATTTGTAGCTTTATCTTGCTCCATTGC
66 GGATTTGTAGCTTTATCTTGCTCCACTAC
* * * * * * *
36261502 AACTTTAGAGAGATAAGATTCGCTATGGTAATTTCAATCCGACCCACTGCAACTTCAGAGGTATA
1 AACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTTAGGGGTATA
36261567 GGATTTG
66 GGATTTG
36261574 CTATGGTAAC
Statistics
Matches: 219, Mismatches: 39, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
94 218 1.00
95 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (94 bp):
AACTTCAGGGAGATAAGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTTAGGGGTATA
GGATTTGTAGCTTTATCTTGCTCCACTAC
Found at i:36261505 original size:44 final size:44
Alignment explanation
Indices: 36261364--36261508 Score: 134
Period size: 44 Copynumber: 3.2 Consensus size: 44
36261354 GACCTACTGT
* *
36261364 AACTTTAGGGGTATATGATTTGTAGCTTTATCTTGCTCCACTAC
1 AACTTTAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTAC
* *
36261408 AACTTCAAGGAG-ATAAGGTTCATTATGGTAACTTTAATC-TGAC-CCACTAC
1 AACTTTAAGG-GTAT-AGG---ATT-T-GTAGCTTT-ATCTTG-CTCCACTAC
* *
36261458 AACTTTAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCATTGC
1 AACTTTAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTAC
36261502 AACTTTA
1 AACTTTA
36261509 GAGAGATAAG
Statistics
Matches: 81, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
43 4 0.05
44 31 0.38
45 4 0.05
46 3 0.04
48 3 0.04
49 5 0.06
50 27 0.33
51 4 0.05
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (44 bp):
AACTTTAAGGGTATAGGATTTGTAGCTTTATCTTGCTCCACTAC
Found at i:36261579 original size:50 final size:50
Alignment explanation
Indices: 36261499--36261623 Score: 171
Period size: 50 Copynumber: 2.5 Consensus size: 50
36261489 CTTGCTCCAT
* * *
36261499 TGCAACTTTAGAGAG-ATAAGATTCGCTATGGTAATTTCAATCCGACCCAC
1 TGCAACTTTAGAG-GTATAGGATTTGCTATGGTAACTTCAATCCGACCCAC
* *
36261549 TGCAACTTCAGAGGTATAGGATTTGCTATGGTAACTTCAATCTGACCCAC
1 TGCAACTTTAGAGGTATAGGATTTGCTATGGTAACTTCAATCCGACCCAC
* *
36261599 TACAACTTTAGGGGTATAGGATTTG
1 TGCAACTTTAGAGGTATAGGATTTG
36261624 TAGCTTTATC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
49 1 0.02
50 65 0.98
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (50 bp):
TGCAACTTTAGAGGTATAGGATTTGCTATGGTAACTTCAATCCGACCCAC
Found at i:36261680 original size:93 final size:94
Alignment explanation
Indices: 36261545--36261977 Score: 276
Period size: 94 Copynumber: 4.7 Consensus size: 94
36261535 TCAATCCGAC
* * *
36261545 CCACTGCAACTTCAGAGG-TATAGGATTTGCTATGGTAACTTCAATCTGACCCACTACAACTTTA
1 CCACTGCAACTTCAG-GGAGATAGGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTCA
* * * *
36261609 GGG-GTATAGGATTTGTAGCTTTATCTTGCT
65 GGGAG-ATAAGATTCGTAGCTTCATCTTACT
* *
36261639 CCACTGCAACTTCAGGGAGATA-GCTTCGCTATGGTAACTTCAATCTGACCCACTGCAACTTCAG
1 CCACTGCAACTTCAGGGAGATAGGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTCAG
*
36261703 GGAGATAAGATTCGTAGCTTCATTTTACT
66 GGAGATAAGATTCGTAGCTTCATCTTACT
* * * * ** * *
36261732 CCATTGCAACTTTAGGGAGATAAGATTCG---TGG---CTTC-ATTTTTCTCCATTGCAACTTCA
1 CCACTGCAACTTCAGGGAGATAGGATTCGCTATGGTAACTTCAATCTGAC-CCACTACAACTTCA
* *
36261790 GGGAGATAAGATTTGCCCTCGTAGTTTCATTTTGA-T
65 GGGAGATAAGA--T----TCGTAGCTTCATCTT-ACT
* * * * *
36261826 CCACTGCAACTTCAAAGG-TATAGGAATT-G-TA--G---CTTTAAT-TCGATCCACTACGACTT
1 CCACTGCAACTTC-AGGGAGATAGG-ATTCGCTATGGTAACTTCAATCT-GACCCACTACAACTT
* * * *
36261882 CAAGGATATAGGATTTGTAGCTTCATCTTACT
63 CAGGGAGATAAGATTCGTAGCTTCATCTTACT
* * * * ** * *
36261914 CCACTGCAACTTCAGGGATATAAGATTCTCTGTGGTAGGTTCAATCTGACCCATTGCAACTTCA
1 CCACTGCAACTTCAGGGAGATAGGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTCA
36261978 AGGGTATAGG
Statistics
Matches: 266, Mismatches: 46, Indels: 54
0.73 0.13 0.15
Matches are distributed among these distances:
87 11 0.04
88 59 0.22
89 1 0.00
90 1 0.00
91 4 0.02
92 1 0.00
93 82 0.31
94 97 0.36
95 10 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (94 bp):
CCACTGCAACTTCAGGGAGATAGGATTCGCTATGGTAACTTCAATCTGACCCACTACAACTTCAG
GGAGATAAGATTCGTAGCTTCATCTTACT
Found at i:36261742 original size:44 final size:44
Alignment explanation
Indices: 36261692--36261802 Score: 195
Period size: 44 Copynumber: 2.5 Consensus size: 44
36261682 TCTGACCCAC
36261692 TGCAACTTCAGGGAGATAAGATTCGTAGCTTCATTTTACTCCAT
1 TGCAACTTCAGGGAGATAAGATTCGTAGCTTCATTTTACTCCAT
* * *
36261736 TGCAACTTTAGGGAGATAAGATTCGTGGCTTCATTTTTCTCCAT
1 TGCAACTTCAGGGAGATAAGATTCGTAGCTTCATTTTACTCCAT
36261780 TGCAACTTCAGGGAGATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
36261803 TGCCCTCGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTCGTAGCTTCATTTTACTCCAT
Found at i:36263408 original size:16 final size:16
Alignment explanation
Indices: 36263384--36263415 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36263374 AATGTTCTTA
*
36263384 TTGGTTGCTTCCACTG
1 TTGGCTGCTTCCACTG
36263400 TTGGCTGCTTCCACTG
1 TTGGCTGCTTCCACTG
36263416 CACCATTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.28, G:0.25, T:0.41
Consensus pattern (16 bp):
TTGGCTGCTTCCACTG
Found at i:36279898 original size:13 final size:13
Alignment explanation
Indices: 36279876--36279916 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
36279866 TCATGAGCAA
36279876 TTTC-TTTATCCT
1 TTTCTTTTATCCT
36279888 TTTCTTTTATCCT
1 TTTCTTTTATCCT
* *
36279901 TTGCTTTTATTCT
1 TTTCTTTTATCCT
36279914 TTT
1 TTT
36279917 ATTTATACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 4 0.16
13 21 0.84
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.71
Consensus pattern (13 bp):
TTTCTTTTATCCT
Found at i:36281446 original size:15 final size:16
Alignment explanation
Indices: 36281415--36281447 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
36281405 ATAATTGTTG
*
36281415 ATATTTATAATTTTTT
1 ATATTTATAAATTTTT
36281431 ATATTT-TAAATTTTT
1 ATATTTATAAATTTTT
36281446 AT
1 AT
36281448 CACTATGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATATTTATAAATTTTT
Found at i:36288376 original size:29 final size:29
Alignment explanation
Indices: 36288294--36288404 Score: 78
Period size: 29 Copynumber: 3.8 Consensus size: 29
36288284 TCATTAGGGT
** * *
36288294 TTATCAGGCACTATGTGCCCGTGATTACAA
1 TTATCAGGCACTATGTATCGGTG-TTACAG
* * * * * *
36288324 TTATCAGGTATTTTTTACCAGTGTTACAG
1 TTATCAGGCACTATGTATCGGTGTTACAG
* * * *
36288353 TTATCAGGCACTCTGTGTCGGTGTTATAT
1 TTATCAGGCACTATGTATCGGTGTTACAG
*
36288382 TTATCAGGTACTATGTATCGGTG
1 TTATCAGGCACTATGTATCGGTG
36288405 GTGGATACCA
Statistics
Matches: 62, Mismatches: 19, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
29 45 0.73
30 17 0.27
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (29 bp):
TTATCAGGCACTATGTATCGGTGTTACAG
Found at i:36292075 original size:41 final size:40
Alignment explanation
Indices: 36292006--36292148 Score: 135
Period size: 41 Copynumber: 3.5 Consensus size: 40
36291996 TAAAATGATT
* * *
36292006 CACCGGCATGT-AGCCTGCTAGCCTTAAAGCCTGATTCAGAA
1 CACCGGCAT-TAAGCCTGCTAGACGTAAAGTCTGATT-AGAA
* ***
36292047 CACCGGTATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTG-ATTAGAA
* ***
36292088 CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTG-ATTAGAA
*
36292129 CACTGGCATTAAGCCTGCTA
1 CACCGGCATTAAGCCTGCTA
36292149 AGCACAGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
40 1 0.01
41 87 0.96
42 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATTAGAA
Found at i:36295414 original size:14 final size:13
Alignment explanation
Indices: 36295385--36295418 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
36295375 GTCGTGCGTC
36295385 TTCTCTTCTTTTTT
1 TTCT-TTCTTTTTT
36295399 TTCTTTCTTTTATT
1 TTCTTTCTTTT-TT
36295413 TTCTTT
1 TTCTTT
36295419 TCGAATTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTTTT
Found at i:36309696 original size:15 final size:15
Alignment explanation
Indices: 36309678--36309708 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36309668 ATTTTACTAC
*
36309678 TATGTCTTTTGTATT
1 TATGTCTTTTATATT
36309693 TATGTCTTTTATATT
1 TATGTCTTTTATATT
36309708 T
1 T
36309709 TTCATGCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TATGTCTTTTATATT
Found at i:36311336 original size:11 final size:11
Alignment explanation
Indices: 36311261--36311336 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
36311251 ATTCCAAAAA
*
36311261 TAATATTACTT
1 TAATATTAATT
36311272 TAATAGTTTAATAT
1 TAATA--TTAAT-T
36311286 TAA-ATTTAATT
1 TAATA-TTAATT
*
36311297 TAATATTTATCT
1 TAATATTAAT-T
*
36311309 TAATAGT-ATT
1 TAATATTAATT
36311319 T--TATTAATT
1 TAATATTAATT
36311328 TAATATTAA
1 TAATATTAA
36311337 AGTGATTAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 21 0.40
12 14 0.26
13 5 0.09
14 4 0.08
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:36313281 original size:19 final size:17
Alignment explanation
Indices: 36313248--36313282 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
36313238 GTTTCTACAA
36313248 ATTCTTTACTTTAATTT
1 ATTCTTTACTTTAATTT
36313265 ATTCTTTTACATTTAATT
1 ATTC-TTTAC-TTTAATT
36313283 CATTTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTCTTTACTTTAATTT
Found at i:36315692 original size:3 final size:3
Alignment explanation
Indices: 36315684--36315715 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
36315674 CACAAATCAC
36315684 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
36315716 AATTCAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:36335725 original size:42 final size:43
Alignment explanation
Indices: 36335679--36335761 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
36335669 ATATGATATC
36335679 GAATCTATATAAATGTAA-TTTTTTATTTTATTTCTCATGTTT
1 GAATCTATATAAATGTAATTTTTTTATTTTATTTCTCATGTTT
*
36335721 GAATCTATATAAATGTAATTTTTTTATTTTTTTTCTCATGT
1 GAATCTATATAAATGTAATTTTTTTATTTTATTTCTCATGT
36335762 AGAAAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 18 0.46
43 21 0.54
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.58
Consensus pattern (43 bp):
GAATCTATATAAATGTAATTTTTTTATTTTATTTCTCATGTTT
Found at i:36337272 original size:29 final size:30
Alignment explanation
Indices: 36337228--36337295 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
36337218 TTAATGACTC
***
36337228 AGTGACTAAAACGTAA-TATTTTAAACAAA
1 AGTGACTAAAACGTAACTAAGGTAAACAAA
*
36337257 AGTGACTAAAATGTAACCTAAGGTAAACAAA
1 AGTGACTAAAACGTAA-CTAAGGTAAACAAA
36337288 AGTGACTA
1 AGTGACTA
36337296 TTTTGATAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 15 0.45
31 18 0.55
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.24
Consensus pattern (30 bp):
AGTGACTAAAACGTAACTAAGGTAAACAAA
Found at i:36347161 original size:27 final size:27
Alignment explanation
Indices: 36347123--36347180 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
36347113 TAAGGAGAGA
*
36347123 GGTAGACATCTCCATTTTCGGATTCCC
1 GGTAGACATCTCCATTTTCGGATACCC
36347150 GGTAGACATCTCCATTTTCGGATACCC
1 GGTAGACATCTCCATTTTCGGATACCC
36347177 GGTA
1 GGTA
36347181 CAATATCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (27 bp):
GGTAGACATCTCCATTTTCGGATACCC
Found at i:36358812 original size:21 final size:22
Alignment explanation
Indices: 36358794--36358833 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36358784 TTCCTTTTCG
36358794 CCTTTTTCA-TTTTCATTTTGT
1 CCTTTTTCACTTTTCATTTTGT
*
36358815 TCTTTTTCACTTTT-ATTTT
1 CCTTTTTCACTTTTCATTTT
36358834 TCTCTTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.10, C:0.17, G:0.03, T:0.70
Consensus pattern (22 bp):
CCTTTTTCACTTTTCATTTTGT
Found at i:36360029 original size:89 final size:89
Alignment explanation
Indices: 36359878--36360056 Score: 358
Period size: 89 Copynumber: 2.0 Consensus size: 89
36359868 GTTAGATAGT
36359878 GTAAATGAATAATAAAAGGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCTGA
1 GTAAATGAATAATAAAAGGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCTGA
36359943 AACCCGAAAACCCGAAAAACTGCG
66 AACCCGAAAACCCGAAAAACTGCG
36359967 GTAAATGAATAATAAAAGGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCTGA
1 GTAAATGAATAATAAAAGGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCTGA
36360032 AACCCGAAAACCCGAAAAACTGCG
66 AACCCGAAAACCCGAAAAACTGCG
36360056 G
1 G
36360057 AGTAACTTGA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.53, C:0.18, G:0.15, T:0.15
Consensus pattern (89 bp):
GTAAATGAATAATAAAAGGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCTGA
AACCCGAAAACCCGAAAAACTGCG
Found at i:36371705 original size:3 final size:3
Alignment explanation
Indices: 36371697--36371723 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
36371687 AATTGAGTAG
36371697 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
36371724 TATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:36371728 original size:3 final size:3
Alignment explanation
Indices: 36371722--36371755 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
36371712 AATAATAATA
36371722 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
36371756 AGCCCGAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36380586 original size:19 final size:19
Alignment explanation
Indices: 36380544--36380580 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36380534 AATATATATT
*
36380544 AATATTTTTTTACCAAAAA
1 AATATTTATTTACCAAAAA
*
36380563 AATATTTATTTATCAAAA
1 AATATTTATTTACCAAAA
36380581 TGATATGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (19 bp):
AATATTTATTTACCAAAAA
Found at i:36388254 original size:25 final size:24
Alignment explanation
Indices: 36388208--36388254 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
36388198 TAGGGTTACC
36388208 GATTTATAACTCTAAGAGCATATT
1 GATTTATAACTCTAAGAGCATATT
* *
36388232 GATTTATAGCTCGTGAGAGCATA
1 GATTTATAACTC-TAAGAGCATA
36388255 CTAATCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (24 bp):
GATTTATAACTCTAAGAGCATATT
Found at i:36388834 original size:15 final size:16
Alignment explanation
Indices: 36388816--36388845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36388806 TCGTGTCTTG
36388816 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
36388831 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
36388846 AACCTATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:36392867 original size:37 final size:37
Alignment explanation
Indices: 36392784--36392921 Score: 125
Period size: 37 Copynumber: 3.7 Consensus size: 37
36392774 TCGTTCAAGT
* * * *
36392784 TTCACTCAGTATAACAGTAGGATTTTGCTCAATTAAAC
1 TTCATTCAGTATAACAGTAAGA-TTTGCTCAGTTAAGC
* * * *
36392822 ATCGTTCAGTATAACAGCAAGATTTGCTCAGTTGAGC
1 TTCATTCAGTATAACAGTAAGATTTGCTCAGTTAAGC
** *
36392859 TTCATTCAGTATAATGGTATGATTTGCTC-GATTAAGC
1 TTCATTCAGTATAACAGTAAGATTTGCTCAG-TTAAGC
* * *
36392896 CTCATTTAGTATAATAGTAAGATTTG
1 TTCATTCAGTATAACAGTAAGATTTG
36392922 GATCAATATA
Statistics
Matches: 80, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
36 1 0.01
37 62 0.77
38 17 0.21
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.36
Consensus pattern (37 bp):
TTCATTCAGTATAACAGTAAGATTTGCTCAGTTAAGC
Found at i:36392883 original size:75 final size:74
Alignment explanation
Indices: 36392784--36392921 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 74
36392774 TCGTTCAAGT
*
36392784 TTCACTCAGTATAACAGTAGGATTTTGCTCAATTAAACATCGTTCAGTATAACAGCAAGATTTGC
1 TTCACTCAGTATAACAGTAGGA-TTTGCTCAATTAAACATCATTCAGTATAACAGCAAGATTTGC
36392849 TCAGTTGAGC
65 TCAGTTGAGC
* ** * * * * * * *
36392859 TTCATTCAGTATAATGGTATGATTTGCTCGATTAAGCCTCATTTAGTATAATAGTAAGATTTG
1 TTCACTCAGTATAACAGTAGGATTTGCTCAATTAAACATCATTCAGTATAACAGCAAGATTTG
36392922 GATCAATATA
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
74 34 0.65
75 18 0.35
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.36
Consensus pattern (74 bp):
TTCACTCAGTATAACAGTAGGATTTGCTCAATTAAACATCATTCAGTATAACAGCAAGATTTGCT
CAGTTGAGC
Found at i:36393280 original size:22 final size:23
Alignment explanation
Indices: 36393255--36393309 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
36393245 TTTAACTTTC
* *
36393255 TTAATTAAGCTTAAATAAATCA-
1 TTAATTAAGCCTAAATAAACCAT
*
36393277 TTAATTAAGCCTAATTAAACCAT
1 TTAATTAAGCCTAAATAAACCAT
*
36393300 TTTATTAAGC
1 TTAATTAAGC
36393310 ATAACCTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (23 bp):
TTAATTAAGCCTAAATAAACCAT
Found at i:36395105 original size:107 final size:105
Alignment explanation
Indices: 36394992--36395321 Score: 297
Period size: 107 Copynumber: 3.0 Consensus size: 105
36394982 CATTAATAAA
* *
36394992 AAAAATATGCTCATACCTTAAATACGATATAAAATACAACAAAAACATTAATAAAATAAATTAAT
1 AAAAATATCCT-ATACCTTAAATACGATATAAAATACAACAAAAACATTAATAAAACAAATTAAT
* *
36395057 CATACATTTAATATAAACTTAAAACTAATCAAACACAACAAC
65 CATACATTTAATACAAACTTAAACCTAAT-AAACACAACAAC
* * * * *
36395099 AAAAATATTCTTTCCCTTAAATACGAAAAACTAATATAAAATACTACAAAAATATTAATAAAACA
1 AAAAATATCCTATACCTTAAATACG--------ATATAAAATACAACAAAAACATTAATAAAACA
*
36395164 AATTAACCATACATTTAATACAAACTTAAACCTAATAAA-ACAA-AA-
58 AATTAATCATACATTTAATACAAACTTAAACCTAATAAACACAACAAC
* * * ** * * * * * *
36395209 AATATTATTTCCCTTAAAAATGAAAAACTGATATAAAATACCACCAAAACTTTAATAAAACAAAC
1 AA-A-AATAT-CC-TATACCTTAAATAC-GATATAAAATACAACAAAAACATTAATAAAACAAAT
*
36395274 TAATCATACCTTTAATACAAACTTAAACCTAATAAAACACAACAAC
61 TAATCATACATTTAATACAAACTTAAACCTAAT-AAACACAACAAC
36395320 AA
1 AA
36395322 CAAAAAATAA
Statistics
Matches: 180, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
106 12 0.07
107 71 0.39
108 3 0.02
109 4 0.02
110 4 0.02
111 5 0.03
112 7 0.04
113 4 0.02
114 69 0.38
115 1 0.01
ACGTcount: A:0.56, C:0.17, G:0.02, T:0.25
Consensus pattern (105 bp):
AAAAATATCCTATACCTTAAATACGATATAAAATACAACAAAAACATTAATAAAACAAATTAATC
ATACATTTAATACAAACTTAAACCTAATAAACACAACAAC
Found at i:36395430 original size:228 final size:221
Alignment explanation
Indices: 36395017--36395433 Score: 575
Period size: 228 Copynumber: 1.9 Consensus size: 221
36395007 CCTTAAATAC
* * *
36395017 GATATAAAATACAACAAAAACATTAATAAAATAAATTAATCATACATTTAATATAAACTTAAAAC
1 GATATAAAATACAACAAAAACATTAATAAAACAAACTAATCATACATTTAATACAAACTTAAAAC
* **
36395082 TAATCAAACACAACAACAAAAATATTCTTTCCCTTAAATACGAAAAACTAATATAAAATACTACA
66 TAATAAAACACAACAACAAAAATAAGCTTTCCCTTAAATACGAAAAACTAATATAAAATACTACA
* **
36395147 AAAATATTAATAAAACAAATTAACCATACATTTAATACAAACTTAAACCTAATAAAACAAAAAAT
131 AAAATAATAATAAAACAAACAAACCATACATTTAATACAAACTTAAACCTAATAAAACAAAAAAT
36395212 ATTATTTCCCTTAAAAATGAAAAACT
196 ATTATTTCCCTTAAAAATGAAAAACT
* * * * *
36395238 GATATAAAATACCACCAAAACTTTAATAAAACAAACTAATCATACCTTTAATACAAACTTAAACC
1 GATATAAAATACAACAAAAACATTAATAAAACAAACTAATCATACATTTAATACAAACTTAAAAC
* * *
36395303 TAATAAAACACAACAACAACAAAAAATAAAGCATTCTCTCTTAAATAC-AGAAAACTGATATAAG
66 TAAT-AAA-AC-ACAACAAC-AAAAAT-AAGC-TT-TCCCTTAAATACGA-AAAACTAATATAAA
* * *
36395367 ATGCTACAAAAATAATAATAAAACAAACAAATCATACATTTAATACAAACTTAAACTTAATAAAA
123 ATACTACAAAAATAATAATAAAACAAACAAACCATACATTTAATACAAACTTAAACCTAATAAAA
36395432 CA
188 CA
36395434 CATATAAAAA
Statistics
Matches: 168, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
221 61 0.36
222 2 0.01
223 2 0.01
224 8 0.05
225 6 0.04
226 2 0.01
227 3 0.02
228 84 0.50
ACGTcount: A:0.57, C:0.16, G:0.02, T:0.25
Consensus pattern (221 bp):
GATATAAAATACAACAAAAACATTAATAAAACAAACTAATCATACATTTAATACAAACTTAAAAC
TAATAAAACACAACAACAAAAATAAGCTTTCCCTTAAATACGAAAAACTAATATAAAATACTACA
AAAATAATAATAAAACAAACAAACCATACATTTAATACAAACTTAAACCTAATAAAACAAAAAAT
ATTATTTCCCTTAAAAATGAAAAACT
Found at i:36396743 original size:80 final size:80
Alignment explanation
Indices: 36396603--36396766 Score: 283
Period size: 80 Copynumber: 2.0 Consensus size: 80
36396593 TGAAAAGATT
*
36396603 AAAAAAAACCTTCACTTGTTAAGTTGACATTGGGGTATATATAGCTGGTGGTGCCATCACATCTG
1 AAAAAAAACCTTCACTTGTTAAGTCGACATTGGGGTATATATAGCTGGTGGTGCCATCACATCTG
36396668 GAGTAGGTACCAAGG
66 GAGTAGGTACCAAGG
* * * *
36396683 AAAAAAAACCTTCACTTGTTAAGTCGGCATTGTGGTATATATAGCTGGTGGTGTCGTCACATCTG
1 AAAAAAAACCTTCACTTGTTAAGTCGACATTGGGGTATATATAGCTGGTGGTGCCATCACATCTG
36396748 GAGTAGGTACCAAGG
66 GAGTAGGTACCAAGG
36396763 AAAA
1 AAAA
36396767 TTTTTATTAC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (80 bp):
AAAAAAAACCTTCACTTGTTAAGTCGACATTGGGGTATATATAGCTGGTGGTGCCATCACATCTG
GAGTAGGTACCAAGG
Found at i:36399781 original size:30 final size:30
Alignment explanation
Indices: 36399685--36399782 Score: 115
Period size: 30 Copynumber: 3.3 Consensus size: 30
36399675 GACGACGATG
*
36399685 CAGGCCCATCAACAACGTCCACACAATCAC
1 CAGGCCCATCAACAACGCCCACACAATCAC
* * ** *
36399715 CCGACCCATCAACAGTGCCCATACAATCAC
1 CAGGCCCATCAACAACGCCCACACAATCAC
* *
36399745 CAGGCCCAGCAACAACACCCACACAATCAC
1 CAGGCCCATCAACAACGCCCACACAATCAC
*
36399775 CGGGCCCA
1 CAGGCCCA
36399783 ACACTTCAAC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.35, C:0.45, G:0.12, T:0.08
Consensus pattern (30 bp):
CAGGCCCATCAACAACGCCCACACAATCAC
Found at i:36400144 original size:21 final size:21
Alignment explanation
Indices: 36400119--36400180 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
36400109 CCAACACCGA
36400119 CAACCAAATCCCCTACCGGAG
1 CAACCAAATCCCCTACCGGAG
* *
36400140 GAACCAAAATCCCC-GCCGGAG
1 CAACC-AAATCCCCTACCGGAG
*
36400161 CAA-CAAGATCCCTTACCGGA
1 CAACCAA-ATCCCCTACCGGA
36400181 AGCTGGACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 2 0.06
20 6 0.18
21 17 0.52
22 8 0.24
ACGTcount: A:0.34, C:0.39, G:0.18, T:0.10
Consensus pattern (21 bp):
CAACCAAATCCCCTACCGGAG
Found at i:36403676 original size:126 final size:126
Alignment explanation
Indices: 36403451--36403738 Score: 479
Period size: 126 Copynumber: 2.3 Consensus size: 126
36403441 GCCAAATAGG
* * *
36403451 AACTAGTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTATTTTTGCTGACATTGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* *
36403516 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAA-GATCTTCTCAAAATTATTTATTCAGA
66 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACG-TCTTCTCAAAATTATTTATTCACA
* *
36403577 AACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
*
36403642 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTCACA
66 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTATTCACA
*
36403703 AACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTT
1 AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
36403739 TTTTAAATTA
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
126 149 0.99
127 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (126 bp):
AACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTATTCACA
Found at i:36403908 original size:96 final size:95
Alignment explanation
Indices: 36403781--36404243 Score: 686
Period size: 96 Copynumber: 4.8 Consensus size: 95
36403771 CCTAAACCCC
* * *
36403781 AAACTCTAATTTATTTGATTTTTCCTTAAAAACTCTAAACACTAAACCCTAATCTAATTTTTTTA
1 AAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
*
36403846 AAATTTATAATTAATTTACTCAAGTAACCAC
66 AAATTTATAATTAATTTACTCAAGTAACC-T
*
36403877 AAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
1 AAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
36403942 AAATTTATAATTAATTTACTCAAGTAACCTT
66 AAATTTATAATTAATTTACTCAAGTAACC-T
* * *
36403973 AAACCTTAATTTATTTGATTTTTCCTTAAAAACCATAAACACTAAACCCTAATCT-ATTTTTT-T
1 AAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
36404036 AAATTTATAATTAATTTACTCAAGTAATCCT
66 AAATTTATAATTAATTTACTCAAGTAA-CCT
* * *
36404067 AAACCCTAATTTATTT-ATTTATTTTTCTTAAGAACCCTAAACACTAAACCCTGATCT-ATTTTT
1 AAACCCTAATTTATTTGA--T-TTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTT
36404130 TAAAAATTTATAATTAATTTACTCAAGTAACCGT
63 TAAAAATTTATAATTAATTTACTCAAGTAACC-T
*
36404164 AAACCCTAATTTATTTGATTTATTCCTTAAAAACCCTAAAC-CTTAAACCCTAATTTAA-TTTTT
1 AAACCCTAATTTATTTGATTT-TTCCTTAAAAACCCTAAACAC-TAAACCCTAATCTAATTTTTT
*
36404227 AAAAATTTATATTTAAT
64 AAAAATTTATAATTAAT
36404244 CTAATTAAGA
Statistics
Matches: 336, Mismatches: 21, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
93 1 0.00
94 43 0.13
95 13 0.04
96 233 0.69
97 45 0.13
98 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.41
Consensus pattern (95 bp):
AAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
AAATTTATAATTAATTTACTCAAGTAACCT
Found at i:36404260 original size:287 final size:293
Alignment explanation
Indices: 36403737--36404266 Score: 797
Period size: 287 Copynumber: 1.8 Consensus size: 293
36403727 ACATGGGAGC
*
36403737 TTTTTTAAATTAACAAATAATTTAATTAAGTAACCCTAAACCCCAAACTCTAATTTATTTGATTT
1 TTTTTTAAATTAACAAATAATTTAATCAAGTAACCCTAAACCCCAAACTCTAATTTATTTGATTT
* *
36403802 TTCCTTAAAAACTCTAAACACTAAACCCTAATCTAATTTTTTTAAAATTTATAATTAATTTACTC
66 TTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTC
36403867 AAGTAACCACAAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCT
131 AAGTAACCACAAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCT
* * *
36403932 AATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCTTAAACCTTAATTTATTTGATTTTTC
196 AATTTTTTAAAAATTTATAATTAATCTAATCAAGAAACCTTAAACCTTAATTTATTTGATTTTTC
36403997 CTTAAAAACCATAAACACTAAACCCTAATCTAT
261 CTTAAAAACCATAAACACTAAACCCTAATCTAT
* * * * * * *
36404030 TTTTTTAAATTTATAATTAATTTACTCAAGTAATCCTAAA-CCCTAA-T-TTATTTATTT-ATTT
1 TTTTTTAAATTAACAAATAATTTAATCAAGTAACCCTAAACCCCAAACTCTAATTTATTTGATTT
* *
36404091 TT-CTTAAGAACCCTAAACACTAAACCCTGATCT-ATTTTTTAAAAATTTATAATTAATTTACTC
66 TTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTC
** *
36404154 AAGTAACCGTAAACCCTAATTTATTTGATTTATTCCTTAAAAACCCTAAAC-CTTAAACCCTAAT
131 AAGTAACCACAAACCCTAATTTATTTAATTT-TTCCTTAAAAACCCTAAACAC-TAAACCCTAAT
* * *
36404218 TTAA-TTTTTAAAAATTTATATTTAATCTAATTAAGAAACCTTAAACCTT
194 CTAATTTTTTAAAAATTTATAATTAATCTAATCAAGAAACCTTAAACCTT
36404267 TCCTTAAAAC
Statistics
Matches: 214, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
287 98 0.46
288 61 0.29
289 6 0.03
290 9 0.04
291 1 0.00
292 5 0.02
293 34 0.16
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (293 bp):
TTTTTTAAATTAACAAATAATTTAATCAAGTAACCCTAAACCCCAAACTCTAATTTATTTGATTT
TTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTC
AAGTAACCACAAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCT
AATTTTTTAAAAATTTATAATTAATCTAATCAAGAAACCTTAAACCTTAATTTATTTGATTTTTC
CTTAAAAACCATAAACACTAAACCCTAATCTAT
Found at i:36408713 original size:27 final size:27
Alignment explanation
Indices: 36408683--36408735 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
36408673 GCTCTTACGA
* * *
36408683 GGCCAAATGCTCCTTTTATTTCAAATG
1 GGCCAAATGCTCATTTCATTCCAAATG
36408710 GGCCAAATGCTCATTTCATTCCAAAT
1 GGCCAAATGCTCATTTCATTCCAAAT
36408736 AAGCCATCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (27 bp):
GGCCAAATGCTCATTTCATTCCAAATG
Found at i:36408741 original size:27 final size:27
Alignment explanation
Indices: 36408684--36408741 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
36408674 CTCTTACGAG
* * * **
36408684 GCCAAATGCTCCTTTTATTTCAAATGG
1 GCCAAATGCTCATTTCATTCCAAATAA
36408711 GCCAAATGCTCATTTCATTCCAAATAA
1 GCCAAATGCTCATTTCATTCCAAATAA
36408738 GCCA
1 GCCA
36408742 TCGTCCAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (27 bp):
GCCAAATGCTCATTTCATTCCAAATAA
Found at i:36413284 original size:6 final size:6
Alignment explanation
Indices: 36413273--36413313 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
36413263 ATTAAAATTT
36413273 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAA
1 AATAAC AATAAC AATAAC AATAAC AATAAC AATAAC AATAA
36413314 TCATCTACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAC
Found at i:36414335 original size:36 final size:34
Alignment explanation
Indices: 36414255--36414352 Score: 97
Period size: 36 Copynumber: 2.8 Consensus size: 34
36414245 AAAAATATTT
* *
36414255 ATATTAATATTTTAATAATAAATATATATTATAAT
1 ATATAAATA-TTTAATAATAAATATATATTATAAA
* *
36414290 TTATAAATATTTAATAATAAAGGTTTATATTATAAA
1 ATATAAATATTTAATAATAAA--TATATATTATAAA
* * *
36414326 ATATGAATATTTTAATTATATATATAT
1 ATATAAATA-TTTAATAATAAATATAT
36414353 GATTGCTTGT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
34 12 0.24
35 11 0.22
36 18 0.35
37 10 0.20
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (34 bp):
ATATAAATATTTAATAATAAATATATATTATAAA
Found at i:36417786 original size:10 final size:10
Alignment explanation
Indices: 36417758--36417789 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
36417748 TCTTCCCTTC
36417758 TTCTC-TCTT
1 TTCTCTTCTT
36417767 TTCT-TTCTT
1 TTCTCTTCTT
36417776 TTCTCTTCTT
1 TTCTCTTCTT
36417786 TTCT
1 TTCT
36417790 TCCTCTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (10 bp):
TTCTCTTCTT
Found at i:36422267 original size:108 final size:107
Alignment explanation
Indices: 36422064--36422382 Score: 484
Period size: 108 Copynumber: 3.0 Consensus size: 107
36422054 CCATACTTTG
* *
36422064 AAGTTTT-AAGAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
*
36422128 CGTTTCCTCGATTTTCCAAACGCGAAGTATTGCTTTATTTTAA
66 CGTTTCCTCGATTTTCCAAACGCGAA-TATTGCCTTATTTTAA
* *
36422171 AAGTTTTAAAAAGGATATTTGGCTATTTGGTC-AAGCGAGAAATTGAAACCCAACACGTTGGGGC
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAA-CGAGAAATCGAAACCCAACACGTTAGGGC
*
36422235 ACGTTTCCTCGATTTTCCAAATGCGAGATATTGCCTTATTTTAA
65 ACGTTTCCTCGATTTTCCAAACGCGA-ATATTGCCTTATTTTAA
* * *
36422279 AAG-TTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAAGCCAGCACGTTAAGGCA
1 AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
36422343 CGCTTT-CTCGATTTTCCAAACGCGAAATATTGCCTTATTT
66 CG-TTTCCTCGATTTTCCAAACGCG-AATATTGCCTTATTT
36422383 AGAAAAAAAC
Statistics
Matches: 194, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
107 95 0.49
108 98 0.51
109 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (107 bp):
AAGTTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTAGGGCA
CGTTTCCTCGATTTTCCAAACGCGAATATTGCCTTATTTTAA
Found at i:36422855 original size:22 final size:23
Alignment explanation
Indices: 36422795--36422855 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
36422785 AAATTGTAAT
*
36422795 AATAT-AAGAATATATGTATGTG
1 AATATAAAGAATATATGTATGAG
* * *
36422817 AATTATAAAAAAAATAT-TTTGAG
1 AA-TATAAAGAATATATGTATGAG
36422840 AATATAAAGAATATAT
1 AATATAAAGAATATAT
36422856 ATAAGTATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 14 0.45
23 9 0.29
24 8 0.26
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (23 bp):
AATATAAAGAATATATGTATGAG
Found at i:36428436 original size:38 final size:37
Alignment explanation
Indices: 36428367--36428439 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
36428357 TTTTCATAAT
* *
36428367 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
36428404 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
36428440 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:36428601 original size:23 final size:23
Alignment explanation
Indices: 36428575--36428662 Score: 158
Period size: 23 Copynumber: 3.8 Consensus size: 23
36428565 CCACACTGGT
*
36428575 ATGTAGCCGAAGCTACCATTGAA
1 ATGTAGCCGAAGCTACCACTGAA
36428598 ATGTAGCCGAAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGAA
*
36428621 ATGTAGCCGAAGCTACCACTGAT
1 ATGTAGCCGAAGCTACCACTGAA
36428644 ATGTAGCCGAAGCTACCAC
1 ATGTAGCCGAAGCTACCAC
36428663 CGATCAATAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (23 bp):
ATGTAGCCGAAGCTACCACTGAA
Found at i:36429124 original size:30 final size:30
Alignment explanation
Indices: 36429090--36429148 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
36429080 TCCTTGACTC
*
36429090 AAACTTTGGTAAAATTACAATTTTACCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
* * *
36429120 AAACTTTTGCATATTTACAATTTTACCCC
1 AAACTTTGGCAAAATTACAATTTTACCCC
36429149 AAAGCTCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTACCCCT
Found at i:36429575 original size:9 final size:9
Alignment explanation
Indices: 36429561--36429597 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
36429551 TGATTTTTCG
36429561 AATTCGAAT
1 AATTCGAAT
36429570 AATTCGAAT
1 AATTCGAAT
36429579 AATTCGAAT
1 AATTCGAAT
36429588 AATTCGAAT
1 AATTCGAAT
36429597 A
1 A
36429598 TCAAATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36429989 original size:17 final size:16
Alignment explanation
Indices: 36429955--36429985 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36429945 CCTATTTACT
*
36429955 TTCCCTCAAACTTTTA
1 TTCCCTAAAACTTTTA
36429971 TTCCCTAAAACTTTT
1 TTCCCTAAAACTTTT
36429986 TATTTTCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (16 bp):
TTCCCTAAAACTTTTA
Found at i:36432708 original size:47 final size:48
Alignment explanation
Indices: 36432592--36432713 Score: 138
Period size: 49 Copynumber: 2.5 Consensus size: 48
36432582 GTTTTCACAT
** * * *
36432592 TGCCATAGTCCATTTATGGTCTTACATGTAATCACATATCACATACCGA
1 TGCCATAGTCCAAATATGGTCTTACACGGAATCACATAT-ACATAACGA
* ** *
36432641 TGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAT-CATAATGA
1 TGCCATAGTCCAAATATGGTCTTACACGGAATCACATATACATAACGA
*
36432688 TGCCATATTCCAAATATGGTCTTACA
1 TGCCATAGTCCAAATATGGTCTTACA
36432714 AGGAGATTTC
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
47 28 0.45
49 34 0.55
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (48 bp):
TGCCATAGTCCAAATATGGTCTTACACGGAATCACATATACATAACGA
Found at i:36439171 original size:22 final size:21
Alignment explanation
Indices: 36439146--36439198 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
36439136 ATTTTTTAAA
*
36439146 TTTGAAT-TCTAAGAAATAAAAC
1 TTTGAATAT-TAACAAA-AAAAC
*
36439168 TTTGAATATTTACAAAAAAAC
1 TTTGAATATTAACAAAAAAAC
36439189 TTTGAATATT
1 TTTGAATATT
36439199 TTTTAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 15 0.54
22 12 0.43
23 1 0.04
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (21 bp):
TTTGAATATTAACAAAAAAAC
Found at i:36439378 original size:18 final size:18
Alignment explanation
Indices: 36439355--36439389 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36439345 ATTGATAATT
*
36439355 TTTGAAATATCAATACCC
1 TTTGAAAAATCAATACCC
*
36439373 TTTGAAAAATCGATACC
1 TTTGAAAAATCAATACC
36439390 AAAAAGGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (18 bp):
TTTGAAAAATCAATACCC
Found at i:36449282 original size:25 final size:25
Alignment explanation
Indices: 36449254--36449344 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
36449244 TTCGACCCAC
*
36449254 AGCTCGTGTAAGCATAGCGATTTAT
1 AGCTCGTGTAAGCATACCGATTTAT
* *
36449279 AGCTCATG-AGAGCATACCGATTTAC
1 AGCTCGTGTA-AGCATACCGATTTAT
* * *
36449304 AGCTCGAGTGAGCATACCGATTCAT
1 AGCTCGTGTAAGCATACCGATTTAT
* * *
36449329 AACTCGTATGAGCATA
1 AGCTCGTGTAAGCATA
36449345 TATGTACATG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.02
25 52 0.98
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
AGCTCGTGTAAGCATACCGATTTAT
Found at i:36454832 original size:51 final size:51
Alignment explanation
Indices: 36454767--36454872 Score: 203
Period size: 51 Copynumber: 2.1 Consensus size: 51
36454757 TTGGGCTAGG
*
36454767 AACAGAAATAACTGAATTTTCCCAAAAATGATACTTGAACCCATAACCTCA
1 AACAAAAATAACTGAATTTTCCCAAAAATGATACTTGAACCCATAACCTCA
36454818 AACAAAAATAACTGAATTTTCCCAAAAATGATACTTGAACCCATAACCTCA
1 AACAAAAATAACTGAATTTTCCCAAAAATGATACTTGAACCCATAACCTCA
36454869 AACA
1 AACA
36454873 CACATCCAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.23
Consensus pattern (51 bp):
AACAAAAATAACTGAATTTTCCCAAAAATGATACTTGAACCCATAACCTCA
Found at i:36465845 original size:22 final size:21
Alignment explanation
Indices: 36465820--36465860 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
36465810 CTATTTTTCT
*
36465820 ATTTTTTGAATTATTATTTTGA
1 ATTTTTAGAATTA-TATTTTGA
*
36465842 ATTTTTAGATTTATATTTT
1 ATTTTTAGAATTATATTTT
36465861 TTTAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (21 bp):
ATTTTTAGAATTATATTTTGA
Found at i:36466012 original size:29 final size:30
Alignment explanation
Indices: 36465979--36466039 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
36465969 TTTTCAATTT
*
36465979 TTATATTTAT-TATTTTGACATTTTA-AAAA
1 TTATATTTATATATTTAGA-ATTTTATAAAA
36466008 TTATATTTATATATTTAGAATTTTATAAAA
1 TTATATTTATATATTTAGAATTTTATAAAA
36466038 TT
1 TT
36466040 TTATAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (30 bp):
TTATATTTATATATTTAGAATTTTATAAAA
Found at i:36466031 original size:37 final size:39
Alignment explanation
Indices: 36465957--36466031 Score: 91
Period size: 37 Copynumber: 1.9 Consensus size: 39
36465947 AATATGTTTT
* * **
36465957 CATTTTATAAAATTTTCAATTTTTATATTTATTATTTTGA
1 CATTTTATAAAATTAT-AATTTATATATTTAGAATTTTGA
36465997 CATTTTA-AAAATTAT-ATTTATATATTTAGAATTTT
1 CATTTTATAAAATTATAATTTATATATTTAGAATTTT
36466032 ATAAAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
37 17 0.55
39 7 0.23
40 7 0.23
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (39 bp):
CATTTTATAAAATTATAATTTATATATTTAGAATTTTGA
Found at i:36471164 original size:61 final size:61
Alignment explanation
Indices: 36471050--36471165 Score: 135
Period size: 61 Copynumber: 1.9 Consensus size: 61
36471040 TTTTTAAAAA
** * * * * * * *
36471050 ACTTAATTTTCAATTTGAATCTTGTATGATGAGTAAGATATTAGTTTGGTATTTTTTAAGG
1 ACTTAATACTCAATTTGAATCTTCTAAGATAAGTAAGACAATAATTTGATATTTTTTAAGG
36471111 ACTTAATACTCAATTTGAATCTTCTACAG-TAAGTAAGACAATAATTTGATATTTT
1 ACTTAATACTCAATTTGAATCTTCTA-AGATAAGTAAGACAATAATTTGATATTTT
36471166 CAATTTTTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
61 44 0.98
62 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.44
Consensus pattern (61 bp):
ACTTAATACTCAATTTGAATCTTCTAAGATAAGTAAGACAATAATTTGATATTTTTTAAGG
Found at i:36471346 original size:22 final size:21
Alignment explanation
Indices: 36471311--36471364 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
36471301 GCCAAGTCAC
36471311 AATAAAAGAAAAAA-TATAAAA
1 AATAAAAGAAAAAAGTA-AAAA
*
36471332 TATAAAATGAAAAAAGTAAAAA
1 AATAAAA-GAAAAAAGTAAAAA
36471354 AATAAAA-AAAA
1 AATAAAAGAAAA
36471365 TTATAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 17 0.59
23 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.15
Consensus pattern (21 bp):
AATAAAAGAAAAAAGTAAAAA
Found at i:36481333 original size:24 final size:24
Alignment explanation
Indices: 36481306--36481353 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
36481296 GCAAATTCTA
*
36481306 GGACTGAGGGTGGAGAAGATGTTG
1 GGACTAAGGGTGGAGAAGATGTTG
* *
36481330 GGACTAAGGGTGGGGACGATGTTG
1 GGACTAAGGGTGGAGAAGATGTTG
36481354 ATAGTGAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.06, G:0.50, T:0.21
Consensus pattern (24 bp):
GGACTAAGGGTGGAGAAGATGTTG
Found at i:36484755 original size:16 final size:16
Alignment explanation
Indices: 36484734--36484764 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36484724 CATTACAAAA
36484734 ATTGTAAATAAATTTT
1 ATTGTAAATAAATTTT
36484750 ATTGTAAATAAATTT
1 ATTGTAAATAAATTT
36484765 AATTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (16 bp):
ATTGTAAATAAATTTT
Found at i:36484899 original size:21 final size:21
Alignment explanation
Indices: 36484875--36484917 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
36484865 AAAAAGGAAA
36484875 CAAAAAAGTCAAACTTAACAG
1 CAAAAAAGTCAAACTTAACAG
36484896 CAAAAAAGTCAAACTTAACAG
1 CAAAAAAGTCAAACTTAACAG
36484917 C
1 C
36484918 CACATCATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.56, C:0.21, G:0.09, T:0.14
Consensus pattern (21 bp):
CAAAAAAGTCAAACTTAACAG
Found at i:36487241 original size:51 final size:51
Alignment explanation
Indices: 36487165--36487265 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
36487155 CTAACGAAAG
* *
36487165 CCCGATACTATCCTTAAATCAATCAAGAGTTAATCTGCGAAGTTTTTCAAT
1 CCCGATACTATCCTTAAACCAATCAAGAGTTAATCTGCGAAGCTTTTCAAT
* * * *
36487216 CCCGATAGTATCCTTAAACCAATCAATAGTTAATTTGTGAAGCTTTTCAA
1 CCCGATACTATCCTTAAACCAATCAAGAGTTAATCTGCGAAGCTTTTCAA
36487266 ACATTCAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.34
Consensus pattern (51 bp):
CCCGATACTATCCTTAAACCAATCAAGAGTTAATCTGCGAAGCTTTTCAAT
Found at i:36488291 original size:29 final size:29
Alignment explanation
Indices: 36488214--36488291 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
36488204 GAGATTAGGG
*
36488214 TTGCTCACACAAGTTGACA-TTTATGAAT
1 TTGCTCACACAAGATGACATTTTATGAAT
* *
36488242 TTGCTCACTCAAGCT-AGCATTTTATGAAT
1 TTGCTCACACAAGATGA-CATTTTATGAAT
*
36488271 TTTCTCACACAAGATGACATT
1 TTGCTCACACAAGATGACATT
36488292 GTAACTAGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 15 0.36
29 25 0.60
30 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (29 bp):
TTGCTCACACAAGATGACATTTTATGAAT
Found at i:36490915 original size:44 final size:44
Alignment explanation
Indices: 36490861--36490948 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
36490851 ATCATTACAA
*
36490861 TCCAAACATAACCTCGATATGACTGATTCCAAGTAGCTTTGTTT
1 TCCAAACATAACCTCGATATGACTGATTCCAAGTAGATTTGTTT
* *
36490905 TCCAGACATAACCTCGATATGGCTGATTCCAAGTAGATTTGTTT
1 TCCAAACATAACCTCGATATGACTGATTCCAAGTAGATTTGTTT
36490949 CAATCATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (44 bp):
TCCAAACATAACCTCGATATGACTGATTCCAAGTAGATTTGTTT
Found at i:36492456 original size:24 final size:24
Alignment explanation
Indices: 36492404--36492456 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
36492394 TTACTAGTAT
* *
36492404 GAGCTTACCGTTACTCAGCTCGTAT
1 GAGCTTACCGTTAC-CAGCTCATAA
36492429 GAGCTTACCGATTA-CAGCTCATAA
1 GAGCTTACCG-TTACCAGCTCATAA
36492453 GAGC
1 GAGC
36492457 ATACTAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 12 0.48
25 10 0.40
26 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (24 bp):
GAGCTTACCGTTACCAGCTCATAA
Found at i:36497031 original size:26 final size:27
Alignment explanation
Indices: 36496994--36497063 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
36496984 TCAAACTGAT
36496994 ATAAAATGACTGTTATGCCCC-ACGTG
1 ATAAAATGACTGTTATGCCCCTACGTG
* * *
36497020 GTAAAATGACTGTTATGCCCCTATGTT
1 ATAAAATGACTGTTATGCCCCTACGTG
36497047 ATAAAATGACTG-TATGC
1 ATAAAATGACTGTTATGC
36497064 TTTATGTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
ATAAAATGACTGTTATGCCCCTACGTG
Found at i:36502783 original size:44 final size:44
Alignment explanation
Indices: 36502720--36502808 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
36502710 TGGAAAGGTT
*
36502720 GGAGTGATATTAGGAGAAGATTATGAGATTGGGGAAGTTATCCC
1 GGAGTGATATTAGGAGAAGATTATGAGATTGAGGAAGTTATCCC
*
36502764 GGAGTGATTTTAGGAGAAGATTATGAGATTGAGGAAGTTATCCC
1 GGAGTGATATTAGGAGAAGATTATGAGATTGAGGAAGTTATCCC
36502808 G
1 G
36502809 ATTTGTTGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.07, G:0.34, T:0.28
Consensus pattern (44 bp):
GGAGTGATATTAGGAGAAGATTATGAGATTGAGGAAGTTATCCC
Found at i:36504101 original size:26 final size:27
Alignment explanation
Indices: 36504031--36504102 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
36504021 TTCAAACTGA
* *
36504031 TATAAAATGACTGTTATGGCCCTATAT
1 TATAAAATGAATGTTATGCCCCTATAT
* *
36504058 TGTAAAATGAATGTTATGCCCCTATGT
1 TATAAAATGAATGTTATGCCCCTATAT
*
36504085 TATAAAATGATTG-TATGC
1 TATAAAATGAATGTTATGC
36504103 TTTATGTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 5 0.13
27 34 0.87
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (27 bp):
TATAAAATGAATGTTATGCCCCTATAT
Found at i:36504419 original size:34 final size:31
Alignment explanation
Indices: 36504381--36504450 Score: 104
Period size: 34 Copynumber: 2.2 Consensus size: 31
36504371 TATTACTGTC
*
36504381 ACTGTAATGGGCTAAGGCCCACACTGATACTGA
1 ACTGTAATGGGCAAAGGCCCA-ACTGA-ACTGA
36504414 TACTGTAATGGGCAAAGGCCCAACTGAACTGA
1 -ACTGTAATGGGCAAAGGCCCAACTGAACTGA
36504446 ACTGT
1 ACTGT
36504451 TAATTAATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
31 5 0.14
32 5 0.14
33 5 0.14
34 20 0.57
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.21
Consensus pattern (31 bp):
ACTGTAATGGGCAAAGGCCCAACTGAACTGA
Found at i:36504750 original size:23 final size:23
Alignment explanation
Indices: 36504724--36504769 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
36504714 GGGATTTTAC
36504724 TTATTTTAATTCATGTCTGATAG
1 TTATTTTAATTCATGTCTGATAG
36504747 TTATTTTAATTCATGTCTGATAG
1 TTATTTTAATTCATGTCTGATAG
36504770 AAGTAGGACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.52
Consensus pattern (23 bp):
TTATTTTAATTCATGTCTGATAG
Found at i:36508614 original size:20 final size:20
Alignment explanation
Indices: 36508591--36508630 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36508581 TAGTGCTATC
*
36508591 AGGGGAACCAAAGTGCAAAT
1 AGGGGAACCAAAGTGAAAAT
**
36508611 AGGGTCACCAAAGTGAAAAT
1 AGGGGAACCAAAGTGAAAAT
36508631 TTGTACAAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.15, G:0.28, T:0.12
Consensus pattern (20 bp):
AGGGGAACCAAAGTGAAAAT
Found at i:36509389 original size:32 final size:32
Alignment explanation
Indices: 36509348--36509408 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
36509338 AAAAATATAC
* * *
36509348 TTTATTATTTCTATGTTTATAATTCCACCGTA
1 TTTACTATTTCTAAGTTTAAAATTCCACCGTA
*
36509380 TTTACTATTTTTAAGTTTAAAATTCCACC
1 TTTACTATTTCTAAGTTTAAAATTCCACC
36509409 ATTAAACATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.05, T:0.51
Consensus pattern (32 bp):
TTTACTATTTCTAAGTTTAAAATTCCACCGTA
Found at i:36517505 original size:17 final size:18
Alignment explanation
Indices: 36517480--36517516 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36517470 ATCGTTTCTA
36517480 TTTAC-AAAAACCATGTT
1 TTTACAAAAAACCATGTT
*
36517497 TTTAGAAAAAACCATGTT
1 TTTACAAAAAACCATGTT
36517515 TT
1 TT
36517517 GTTGAGTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.38
Consensus pattern (18 bp):
TTTACAAAAAACCATGTT
Found at i:36520076 original size:28 final size:27
Alignment explanation
Indices: 36520045--36520123 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36520035 AACCTACCTC
*
36520045 TAGGGGTATAATGGTCATTTT-CATCTAT
1 TAGGGGTATAATGGTCATTTTAC-CCT-T
* *
36520073 TAGGGGTAAAATAGTCATTTTACCCTT
1 TAGGGGTATAATGGTCATTTTACCCTT
**
36520100 TAGGGGTATTTTGGTCATTTTACC
1 TAGGGGTATAATGGTCATTTTACC
36520124 TAATTTAGGG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 21 0.49
28 21 0.49
29 1 0.02
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.42
Consensus pattern (27 bp):
TAGGGGTATAATGGTCATTTTACCCTT
Found at i:36526140 original size:26 final size:26
Alignment explanation
Indices: 36526111--36526161 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
36526101 AACACACCAA
36526111 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
36526137 TATCGCAGCAAAGTTGCTAGTAACA
1 TATCGCAGCAAAGCTGCCAGTAACA
36526162 TAATACTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:36540742 original size:28 final size:27
Alignment explanation
Indices: 36540685--36540836 Score: 250
Period size: 27 Copynumber: 5.6 Consensus size: 27
36540675 TAAATTGTGC
*
36540685 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36540712 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36540740 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36540767 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
36540795 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36540822 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36540837 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 65 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:36540749 original size:55 final size:55
Alignment explanation
Indices: 36540685--36540836 Score: 268
Period size: 55 Copynumber: 2.8 Consensus size: 55
36540675 TAAATTGTGC
*
36540685 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
36540740 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
36540795 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
36540837 GACTTAATAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 93 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:36544957 original size:27 final size:27
Alignment explanation
Indices: 36544898--36544957 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 27
36544888 TAAAGCTCGC
36544898 TGATTTACGATCATAACTTAAGTTCATT
1 TGATTTACGATCATAAC-TAAGTTCATT
36544926 T-ATTTACGATCATGAAC-AA-TTCATTT
1 TGATTTACGATCAT-AACTAAGTTCA-TT
36544952 TGATTT
1 TGATTT
36544958 TACTAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
25 4 0.14
26 5 0.17
27 16 0.55
28 4 0.14
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (27 bp):
TGATTTACGATCATAACTAAGTTCATT
Found at i:36544993 original size:134 final size:134
Alignment explanation
Indices: 36544717--36545106 Score: 421
Period size: 134 Copynumber: 2.9 Consensus size: 134
36544707 AGGGAATATG
* *
36544717 TCAAATAA-TTCACT-AATTACGATCACGACT-AGTATTATTAAAGCTTGCTGATTTACGATCAT
1 TCAAA-AAGTTCACTGATTTACAATCACGACTGA-TATTATTAAAGCTTGCTGATTTACGATCAT
* * ** * *
36544779 -GCTTAAGTTCACTTATTTACGATCATGAATAGTTCATTTTGAGTTCGTTGATTAATTATCGCAA
64 AGCTTAAGTTCATTTATTTACGATCATGAACAGTTCATTTTGAGTTCACTGATTTATGATCGCAA
*
36544843 CTTCAC
129 CTCCAC
* ** * * * *
36544849 TCAAAAAGTTCATTGATTTATGATTATGACTGATATTATTAAAGCTCGCTGATTTACGATCATAA
1 TCAAAAAGTTCACTGATTTACAATCACGACTGATATTATTAAAGCTTGCTGATTTACGATCATAG
* * * * * *
36544914 CTTAAGTTCATTTATTTACGATCATGAACAATTCATTTTGATTTTACTAATTTATGATTGTAACT
66 CTTAAGTTCATTTATTTACGATCATGAACAGTTCATTTTGAGTTCACTGATTTATGATCGCAACT
*
36544979 CCAT
131 CCAC
* * * * * * *
36544983 TCAAACAGTTCGCTGATTTACAATCACGACTGCTATTATTAAAGCTTGTTGATTTATGGTCACAG
1 TCAAAAAGTTCACTGATTTACAATCACGACTGATATTATTAAAGCTTGCTGATTTACGATCATAG
* * *
36545048 CTTAAGTTCATTGATTTAAGATCATG-ACTAGTTCATTTTGCGTTCACTGATTTATGATC
66 CTTAAGTTCATTTATTTACGATCATGAAC-AGTTCATTTTGAGTTCACTGATTTATGATC
36545107 ATGACTAGTA
Statistics
Matches: 210, Mismatches: 43, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
131 2 0.01
132 10 0.05
133 43 0.20
134 155 0.74
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (134 bp):
TCAAAAAGTTCACTGATTTACAATCACGACTGATATTATTAAAGCTTGCTGATTTACGATCATAG
CTTAAGTTCATTTATTTACGATCATGAACAGTTCATTTTGAGTTCACTGATTTATGATCGCAACT
CCAC
Found at i:36545208 original size:206 final size:206
Alignment explanation
Indices: 36544927--36545307 Score: 476
Period size: 206 Copynumber: 1.8 Consensus size: 206
36544917 AAGTTCATTT
* * ***
36544927 ATTTACGATCATGAACAATTCATTTTGATTTTACTAATTTATGATTGTAACTCCATTCAAACAGT
1 ATTTACGATCATGAACAATTCATTTTGAGTTCACTAATTTATGATCACAACTCCATTCAAACAGT
* * * * * * * *
36544992 TCGCTGATTTACAATCACGACT-GCTATTATTAAAGCTTGTTGATTTATGGTCACAGCTTAAGTT
66 TCACTGATTTACAATCACCACTAG-TATTATTAAAGCTTGCTGATATACGATCACAACTTAAGCT
* * *
36545056 CATTGATTTAAGATCATGACTAGTTCATTTTGCGTTCACTGATTTATGATCATGACTAGTAGTAT
130 CAATGATTTAAGATCATGAATAGTTCATTTTGAGTTCACTGATTTATGATCATGACTAGTAGTAT
36545121 TAAAGTTTGTTG
195 TAAAGTTTGTTG
* * ** * * *
36545133 ATTTATGATCATGAACAATTTATTTTGAGTTCGTTGATTTATGATCACAACTCCATTGAAATAGT
1 ATTTACGATCATGAACAATTCATTTTGAGTTCACTAATTTATGATCACAACTCCATTCAAACAGT
* *
36545198 TCATTGATTTACGATCACCACTAGTATTATTAAAGCTTGCTGATATACGATCACAACTTAAGCTC
66 TCACTGATTTACAATCACCACTAGTATTATTAAAGCTTGCTGATATACGATCACAACTTAAGCTC
** * * *
36545263 AATGATTTACTATCGTGAATAGTTTATTTTGAGTTCATTGATTTA
131 AATGATTTAAGATCATGAATAGTTCATTTTGAGTTCACTGATTTA
36545308 AAATCGCAAC
Statistics
Matches: 144, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
206 143 0.99
207 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (206 bp):
ATTTACGATCATGAACAATTCATTTTGAGTTCACTAATTTATGATCACAACTCCATTCAAACAGT
TCACTGATTTACAATCACCACTAGTATTATTAAAGCTTGCTGATATACGATCACAACTTAAGCTC
AATGATTTAAGATCATGAATAGTTCATTTTGAGTTCACTGATTTATGATCATGACTAGTAGTATT
AAAGTTTGTTG
Found at i:36545307 original size:134 final size:133
Alignment explanation
Indices: 36545130--36545578 Score: 449
Period size: 134 Copynumber: 3.3 Consensus size: 133
36545120 TTAAAGTTTG
* * * *
36545130 TTGATTTA-TGATCATGAACAATTTATTTTGAGTTCGTTGATTTATGATCACAACTCCATTGAAA
1 TTGATTTACT-ATCATGAACAGTTTATTTTGAGTTCATTGATTTAAGATCGCAACTCCATTGAAA
* *
36545194 TAGTTCATTGATTTACGATCACCACTAGTATTATTAAAGCTTGCTGATATACGATCACAACTTAA
65 TAGTTCATTGATTTACGATCATCAATAGTATTATTAAAGCTTGCTGAT-TACGATCACAACTTAA
36545259 GCTCA
129 GCTCA
* * * * * *
36545264 ATGATTTACTATCGTGAATAGTTTATTTTGAGTTCATTGATTTAAAATCGCAACTTCATTCAAAT
1 TTGATTTACTATCATGAACAGTTTATTTTGAGTTCATTGATTTAAGATCGCAACTCCATTGAAAT
* * *
36545329 AGTTCGTTGATTTACGATC-TCAATTGATAATAATATTAAAGCTTGCTGATTTACGATCACAACC
66 AGTTCATTGATTTACGATCATCAATAG-T-AT--TATTAAAGCTTGCTGA-TTACGATCACAACT
36545393 TAAGCTCA
126 TAAGCTCA
* * * * * *
36545401 TTGATTTACGATCATGAACAGTTCATTTTGAGTTCACTGATCTACGATCGCAACTCTA-TGTAAA
1 TTGATTTACTATCATGAACAGTTTATTTTGAGTTCATTGATTTAAGATCGCAACTCCATTG-AAA
* * * * * * ** **
36545465 TAGTTTACTGGTTTACGATAAT-AATTGGTACTATTAAAGCTTATTGACTTACGATCACGCCTTA
65 TAGTTCATTGATTTACGATCATCAA-TAGTATTATTAAAGCTTGCTGA-TTACGATCACAACTTA
* *
36545529 TGTTCA
128 AGCTCA
* *
36545535 TTGATTTA-TAATCATGAACAATTTATTTTGAGTTCATCGATTTA
1 TTGATTTACT-ATCATGAACAGTTTATTTTGAGTTCATTGATTTA
36545579 CAATCATAAT
Statistics
Matches: 257, Mismatches: 48, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
133 4 0.02
134 140 0.54
135 3 0.01
136 2 0.01
137 104 0.40
138 4 0.02
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (133 bp):
TTGATTTACTATCATGAACAGTTTATTTTGAGTTCATTGATTTAAGATCGCAACTCCATTGAAAT
AGTTCATTGATTTACGATCATCAATAGTATTATTAAAGCTTGCTGATTACGATCACAACTTAAGC
TCA
Found at i:36549011 original size:47 final size:47
Alignment explanation
Indices: 36548912--36549215 Score: 423
Period size: 47 Copynumber: 6.5 Consensus size: 47
36548902 CAACCCTGTT
* * * * * *
36548912 TTGGACAGCAATTATTCATCAAATTGGGCAGCAAT-AATATGCTCTAAA
1 TTGGACAGC-ATTATACATTAAAATGGACAGC-ATCAATATACTCAAAA
* * * * *
36548960 -TGGACAGCATTATACATTGAATTAGACAGCTTAAATATACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
36549006 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTTAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
36549053 TTGGACAGCATTATACATTAAAATGGACAACATCAATATACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
36549100 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTTAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
* *
36549147 TTGGACAGCATTATACATTAAAATGGACAACATCAATATACTTAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
36549194 TTTGACAGCATTATACATTAAA
1 TTGGACAGCATTATACATTAAA
36549216 TTTATAACAC
Statistics
Matches: 234, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 28 0.12
47 205 0.88
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.28
Consensus pattern (47 bp):
TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
Found at i:36550185 original size:28 final size:27
Alignment explanation
Indices: 36550153--36550223 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 27
36550143 TTAATAAGTA
** *
36550153 CGCACACTTAGTGCTTTACCCTTATACT
1 CGCACACTTAGTGCTTT-CAATTAAACT
36550181 CGCACACTTAGTGCATTTCAATTAAACT
1 CGCACACTTAGTGC-TTTCAATTAAACT
36550209 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36550224 AATCTCATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.03
28 35 0.90
29 3 0.08
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (27 bp):
CGCACACTTAGTGCTTTCAATTAAACT
Found at i:36553971 original size:19 final size:19
Alignment explanation
Indices: 36553949--36553991 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
36553939 AGAAATTAAT
36553949 TAAAAACCATAAA-ATTTTA
1 TAAAAA-CATAAATATTTTA
*
36553968 TAAAAAGATAAATATTTTA
1 TAAAAACATAAATATTTTA
36553987 TAAAA
1 TAAAA
36553992 TTTTATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAAAACATAAATATTTTA
Found at i:36554203 original size:9 final size:9
Alignment explanation
Indices: 36554172--36554228 Score: 62
Period size: 9 Copynumber: 6.3 Consensus size: 9
36554162 ATAAATTTTT
36554172 ATTTTTATA
1 ATTTTTATA
* *
36554181 ATTTTAATG
1 ATTTTTATA
*
36554190 TTTTTTATA
1 ATTTTTATA
36554199 A-TTTTATAA
1 ATTTTTAT-A
36554208 ATTTTTATA
1 ATTTTTATA
*
36554217 TTTTTTATA
1 ATTTTTATA
36554226 ATT
1 ATT
36554229 ACAGAACGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 6 0.16
9 26 0.68
10 6 0.16
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36554228 original size:18 final size:18
Alignment explanation
Indices: 36554154--36554225 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
36554144 TAAATAATAA
*
36554154 ATTTTTATATAAATTTT-T
1 ATTTTT-TATAATTTTTAT
*
36554172 A-TTTTTATAATTTTAAT
1 ATTTTTTATAATTTTTAT
*
36554189 GTTTTTTATAA-TTTTAT
1 ATTTTTTATAATTTTTAT
* *
36554206 AAATTTTTATATTTTTTAT
1 -ATTTTTTATAATTTTTAT
36554225 A
1 A
36554226 ATTACAGAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
16 8 0.19
17 10 0.23
18 19 0.44
19 6 0.14
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (18 bp):
ATTTTTTATAATTTTTAT
Found at i:36561051 original size:51 final size:52
Alignment explanation
Indices: 36560975--36561110 Score: 165
Period size: 50 Copynumber: 2.7 Consensus size: 52
36560965 TCGGTTCATA
* *
36560975 TAGTAGCGTGCATATAGTACTACACATGTGACCATTACCA-TCC-GATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCAG-TACACG
* *
36561026 TAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCAGTACACG
* *
36561076 TAGTAGCTTGCACATAGTA-TGACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACT-ACACATGTGACCAT
36561111 CACTTTCACT
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
49 5 0.07
50 37 0.51
51 31 0.42
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCAGTACACG
Found at i:36561088 original size:50 final size:50
Alignment explanation
Indices: 36560975--36561094 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 50
36560965 TCGGTTCATA
* * *
36560975 TAGTAGCGTGCATATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACG
*
36561026 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCC-AGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGA-TACACG
*
36561076 TAGTAGCTTGCACATAGTA
1 TAGTAGCCTGCACATAGTA
36561095 TGACACACGT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 5 0.08
50 27 0.44
51 30 0.48
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACG
Found at i:36565792 original size:28 final size:28
Alignment explanation
Indices: 36565760--36565817 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
36565750 CTGAAATAAC
*
36565760 ACCTCTAGAAGGATCATAAATTTCACAA
1 ACCTCTAGAAAGATCATAAATTTCACAA
36565788 ACCTCTAGAAAGATCATAAATTTCACAA
1 ACCTCTAGAAAGATCATAAATTTCACAA
36565816 AC
1 AC
36565818 ACCTTTTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.45, C:0.22, G:0.09, T:0.24
Consensus pattern (28 bp):
ACCTCTAGAAAGATCATAAATTTCACAA
Found at i:36569903 original size:109 final size:108
Alignment explanation
Indices: 36569554--36570089 Score: 759
Period size: 109 Copynumber: 5.0 Consensus size: 108
36569544 AAAATTCAAG
* * *
36569554 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
36569618 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
* * * *
36569662 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGTACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGCTATTTGGTCGAACGAG--AAATCGAAACCCAGTACCTTAGGGCACG-TTCCTC
36569727 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
63 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
* *
36569773 AGGATATTAAG-TCATTTGGTCGAACGAGAAATCGAAACCTAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
36569837 ATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAACATTGCCTTA-TTTTGAAAA-TTTTTGAAA
* *
36569882 AGGATATTTAGCTATTCGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAC
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
36569947 TTTCCAAACGCAAAATATTGCCTTATTTTTGAAAA-TTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTA-TTTTGAAAATTTTTGAAA
* *
36569990 AGAATATTAAG-TCATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTA-GGCACGTTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
36570053 A-TTCCAAAC-C-AAATATTGCC-TATTTTGAAATATTTTT
65 ATTTCCAAACGCAAAACATTGCCTTATTTTGAAA-ATTTTT
36570090 CCTTTTTTGA
Statistics
Matches: 391, Mismatches: 25, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
102 8 0.02
103 3 0.01
104 14 0.04
105 1 0.00
106 8 0.02
107 19 0.05
108 102 0.26
109 129 0.33
110 33 0.08
111 74 0.19
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (108 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
Found at i:36570225 original size:4 final size:4
Alignment explanation
Indices: 36570216--36570311 Score: 61
Period size: 4 Copynumber: 22.8 Consensus size: 4
36570206 ATACAACAAC
* ** * *
36570216 AAAT AAAT AAAT AAAT AAACT AAA- ATAT AAA- AAAT GGAC ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
36570263 AAAT AAAT AAAT GAACT AAAGT AAAAT AAAAT AAAAT AAAT AAAAT AAA
1 AAAT AAAT AAAT -AAAT AAA-T -AAAT -AAAT -AAAT AAAT -AAAT AAA
36570312 ATAATAATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
3 5 0.07
4 43 0.58
5 23 0.31
6 3 0.04
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:36570291 original size:19 final size:18
Alignment explanation
Indices: 36570216--36570321 Score: 76
Period size: 19 Copynumber: 5.6 Consensus size: 18
36570206 ATACAACAAC
36570216 AAAT-AAATAAAT-AAAT
1 AAATAAAATAAATAAAAT
36570232 AAACTAAAATATAA-AAAAT
1 AAA-TAAAATA-AATAAAAT
*
36570251 GGACATATAAATAAAT-AAAT
1 --AAATA-AAATAAATAAAAT
* *
36570271 AAATGAACTAAAGTAAAAT
1 AAATAAAATAAA-TAAAAT
36570290 AAAATAAAATAAATAAAAT
1 -AAATAAAATAAATAAAAT
36570309 AAAATAATAATAA
1 -AAATAA-AATAA
36570322 CAATAAAGGA
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
16 3 0.04
17 7 0.10
18 9 0.12
19 23 0.32
20 23 0.32
21 7 0.10
ACGTcount: A:0.71, C:0.03, G:0.04, T:0.23
Consensus pattern (18 bp):
AAATAAAATAAATAAAAT
Found at i:36570326 original size:6 final size:5
Alignment explanation
Indices: 36570216--36570328 Score: 71
Period size: 5 Copynumber: 23.4 Consensus size: 5
36570206 ATACAACAAC
* * * *
36570216 AAAT- AAAT- AAAT- AAATA AACTA AAATA TAA-A AAATGG ACATA TAAAT-
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAAT-A AAATA -AAATA
* * *
36570263 AAAT- AAAT- AAATG AACTA AAGTA AAATA AAATA AAAT- AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
36570310 AAATA ATAATA ACAATA AA
1 AAATA A-AATA A-AATA AA
36570329 GGAAAAGATA
Statistics
Matches: 89, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
4 31 0.35
5 42 0.47
6 16 0.18
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (5 bp):
AAATA
Done.