Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 111 of 208
Found at i:36570668 original size:3 final size:3
Alignment explanation
Indices: 36570660--36570694 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36570650 AAAATACAAC
* *
36570660 TAA TAA TAA TAA TAG TAA TAA TAA TAG TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36570695 TGAAATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36570678 original size:12 final size:12
Alignment explanation
Indices: 36570663--36570694 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
36570653 ATACAACTAA
36570663 TAATAATAATAG
1 TAATAATAATAG
36570675 TAATAATAATAG
1 TAATAATAATAG
36570687 TAATAATA
1 TAATAATA
36570695 TGAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:36572375 original size:44 final size:44
Alignment explanation
Indices: 36572319--36572473 Score: 168
Period size: 44 Copynumber: 3.5 Consensus size: 44
36572309 GGAAGATAAG
*
36572319 ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA
1 ATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA
*** * * * * *
36572363 ATTTGGAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGG
1 ATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA
* * *
36572407 ATTCACCATCTTCGATCTGTTCCACTACTACTTAGGGAGACAGA
1 ATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA
* *
36572451 A-TCTACAATCTTCAATCTACTCC
1 ATTC-ACAATCTTCGATCTGCTCC
36572474 GTTGTCAGTA
Statistics
Matches: 86, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
43 2 0.02
44 84 0.98
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (44 bp):
ATTCACAATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA
Found at i:36572410 original size:88 final size:88
Alignment explanation
Indices: 36572312--36572473 Score: 261
Period size: 88 Copynumber: 1.8 Consensus size: 88
36572302 TATCTTGGGA
* * **
36572312 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGGAATCTTCA
1 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCA
36572377 ACCTACTCCACTACTGCTTAGGG
66 ACCTACTCCACTACTGCTTAGGG
* *
36572400 AGATAGGATTCACCATCTTCGATCTGTTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCA
1 AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCA
*
36572465 ATCTACTCC
66 ACCTACTCC
36572474 GTTGTCAGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (88 bp):
AGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCA
ACCTACTCCACTACTGCTTAGGG
Found at i:36572516 original size:45 final size:45
Alignment explanation
Indices: 36572452--36572540 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
36572442 GGAGACAGAA
* *
36572452 TCTACAATCTTCAATCTACTCCGTTGTCAGTACAGGAAGGCAAGC
1 TCTACAATCTTCAATCTACTCCGCTGTCAGTACAAGAAGGCAAGC
* * *
36572497 TCTACTATCTTTAGTCTACTCCGCTGTCAGTACAAGAAGGCAAG
1 TCTACAATCTTCAATCTACTCCGCTGTCAGTACAAGAAGGCAAG
36572541 ACTAGTTTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (45 bp):
TCTACAATCTTCAATCTACTCCGCTGTCAGTACAAGAAGGCAAGC
Found at i:36572663 original size:88 final size:88
Alignment explanation
Indices: 36572566--36572913 Score: 531
Period size: 88 Copynumber: 4.0 Consensus size: 88
36572556 CAACTCCGCT
* * *
36572566 ACAACCGAGAGAGGCAAGGTTTGTGTCTTTGACCTGATTCGCTGTCAATGCAGGAAGGCAAGATC
1 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
*
36572631 TTTTGCCTTCAACCAGCTCCATC
66 TTTTGTCTTCAACCAGCTCCATC
* * *
36572654 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGTAGAAAGACAAAATC
1 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
*
36572719 TTTTGTCTTCATCCAGCTCCATC
66 TTTTGTCTTCAACCAGCTCCATC
*
36572742 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGAAAGGCAAGATC
1 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
36572807 TTTTGTCTTCAACCAGCTCCATC
66 TTTTGTCTTCAACCAGCTCCATC
* * *
36572830 ACAACCGAGAGAGGCAAGGTTTGT-T-TTCGATCTGCTTCGCTGTTAACGCA-AGAAGGCAAGAT
1 ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGA-AAGGCAAGAT
** *
36572892 CTGCTATCTTCAACCAGCTCCA
65 CTTTTGTCTTCAACCAGCTCCA
36572914 CTGCAACCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
85 1 0.00
86 50 0.21
87 1 0.00
88 187 0.78
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (88 bp):
ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAAAGGCAAGATC
TTTTGTCTTCAACCAGCTCCATC
Found at i:36572669 original size:44 final size:44
Alignment explanation
Indices: 36572621--36572847 Score: 176
Period size: 44 Copynumber: 5.2 Consensus size: 44
36572611 CAATGCAGGA
*
36572621 AGGCAAGATCTTTTGCCTTCAACCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * * * ** * *
36572665 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGC-TGTCAA-TGTAGAA
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-CATCACAACCG-AGAG
* * *
36572709 AGACAAAATCTTTTGTCTTCATCCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * * * ** ** * *
36572753 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGTTGTCAA-TGCAGAA
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TCCATCACAACCG-AGAG
36572797 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
36572841 AGGCAAG
1 AGGCAAG
36572848 GTTTGTTTTC
Statistics
Matches: 130, Mismatches: 43, Indels: 20
0.67 0.22 0.10
Matches are distributed among these distances:
43 29 0.22
44 71 0.55
45 30 0.23
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (44 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
Found at i:36572902 original size:86 final size:88
Alignment explanation
Indices: 36572518--36572913 Score: 518
Period size: 88 Copynumber: 4.5 Consensus size: 88
36572508 TAGTCTACTC
* * * * * *
36572518 CGCTGTCAGTACAAGAAGGCAAGA-CTAGTT-TCTCCAACCAACTCC-GCTACAACCGAGAGAGG
1 CGCTGTCAATGCAAGAAGGCAAGATCT-TTTGTCTTCAACCAGCTCCATC-ACAACCGAGAGAGG
* *
36572580 CAAGGTTTGTGTCTTTGACCTGATT
64 CAAGGTTTGTGTCTTCGACCTGCTT
* *
36572605 CGCTGTCAATGCAGGAAGGCAAGATCTTTTGCCTTCAACCAGCTCCATCACAACCGAGAGAGGCA
1 CGCTGTCAATGCAAGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCA
36572670 AGGTTTGTGTCTTCGACCTGCTT
66 AGGTTTGTGTCTTCGACCTGCTT
* * * *
36572693 CGCTGTCAATG-TAGAAAGACAAAATCTTTTGTCTTCATCCAGCTCCATCACAACCGAGAGAGGC
1 CGCTGTCAATGCAAG-AAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGC
36572757 AAGGTTTGTGTCTTCGACCTGCTT
65 AAGGTTTGTGTCTTCGACCTGCTT
*
36572781 CGTTGTCAATGC-AGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGC
1 CGCTGTCAATGCAAG-AAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGC
*
36572845 AAGGTTTGT-T-TTCGATCTGCTT
65 AAGGTTTGTGTCTTCGACCTGCTT
* * ** *
36572867 CGCTGTTAACGCAAGAAGGCAAGATCTGCTATCTTCAACCAGCTCCA
1 CGCTGTCAATGCAAGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCA
36572914 CTGCAACCAA
Statistics
Matches: 276, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
86 49 0.18
87 27 0.10
88 199 0.72
89 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (88 bp):
CGCTGTCAATGCAAGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCA
AGGTTTGTGTCTTCGACCTGCTT
Found at i:36572921 original size:86 final size:85
Alignment explanation
Indices: 36572529--36573452 Score: 548
Period size: 86 Copynumber: 10.8 Consensus size: 85
36572519 GCTGTCAGTA
* * * * *
36572529 CAAGAAGGCAAGA-CTAGTTTCTCCAACCAACTCCGCTACAACCGA-GAGAGGCAAGGTTTGTGT
1 CAAGAAGGCAAGATCT-GCTTCTTCAACCAGCTCCACTACAACCAATGA-AGGCAAGGTTTGT-T
* * * *
36572592 CTTTGACCTGATTCGCTGTCAATG
63 -TTCGATCTGCTTCGCTGTTAATG
* * *
36572616 CAGGAAGGCAAGATCT-TTTGCCTTCAACCAGCTCCA-TCACAACCGA-GAGAGGCAAGGTTTGT
1 CAAGAAGGCAAGATCTGCTT--CTTCAACCAGCTCCACT-ACAACCAATGA-AGGCAAGGTTTGT
* *
36572678 GTCTTCGACCTGCTTCGCTGTCAATG
62 -T-TTCGATCTGCTTCGCTGTTAATG
* * * ** * *
36572704 -TAGAAAGACAAAATCTTTTGTCTTCATCCAGCTCCA-TCACAACCGA-GAGAGGCAAGGTTTGT
1 CAAG-AAGGCAAGATCTGCT-TCTTCAACCAGCTCCACT-ACAACCAATGA-AGGCAAGGTTTGT
* * *
36572766 GTCTTCGACCTGCTTCGTTGTCAATG
62 -T-TTCGATCTGCTTCGCTGTTAATG
** *
36572792 C-AGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCA-TCACAACCGA-GAGAGGCAAGGTTTGT
1 CAAG-AAGGCAAGATCTGCT-TCTTCAACCAGCTCCACT-ACAACCAATGA-AGGCAAGGTTTGT
*
36572854 TTTCGATCTGCTTCGCTGTTAACG
62 TTTCGATCTGCTTCGCTGTTAATG
* *
36572878 CAAGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTGCAACCAATGAAGGCAATGCTTTGTTT
1 CAAGAAGGCAAGATCTGCT-TCTTCAACCAGCTCCACTACAACCAATGAAGGCAA-GGTTTGTTT
* *
36572943 TCAATCTGCTTTGCTGTTAATG
64 TCGATCTGCTTCGCTGTTAATG
* ** * ***
36572965 CAGGAAGGC-A-A--------TT-AACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTT-
1 CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACT---A-CAACCAATG-AAGGCAAGGTTTG
** * * * **
36573018 TCAATCTGCTTTG-TT-GTTAATACA-G
61 T-TTTC-GATCTGCTTCGCTGTTA-ATG
* ** * * * * ** * * * ** *
36573043 GAAGGCAA-G--ATCTGCTTCTT-TAACCAGCTCCACTACAACCAATGAAGGCAAGGC----TTT
1 CAA-G-AAGGCAAGAT-CTGCTTCT-TCAACCAGCTCCACTA-CAACCAATG-AAGGCAAGGTTT
36573100 GTTTTCGATCTGCTTCGCTGTTAATG
60 GTTTTCGATCTGCTTCGCTGTTAATG
* * *
36573126 CAAGAAAGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTT
1 CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTACAACCAATGAAGGCAAGG-TTTGTTTT
*
36573191 CGATCTGCTTTGCTGTTAATG
65 CGATCTGCTTCGCTGTTAATG
* * *
36573212 CAAGAAGGCAAGATCTGCTTTTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTT
1 CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTACAACCAATGAAGGCAAGG-TTTGTTTT
36573277 CGATCTGCTTCGCTGTTAATG
65 CGATCTGCTTCGCTGTTAATG
* * *
36573298 CAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTT
1 CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTACAACCAATGAAGGCAAGG-TTTGTTTT
36573363 CGATCTGCTTCGCTGTTAATG
65 CGATCTGCTTCGCTGTTAATG
* * * * * * *
36573384 TAGGAAGGCAAGATCTACTTCTTTAACTAGCTTCACTACAACCAATGAAGGCAAGGCTTGGTTTT
1 CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTACAACCAATGAAGGCAAGG-TTTGTTTT
36573449 CGAT
65 CGAT
36573453 GTTCACTGAT
Statistics
Matches: 699, Mismatches: 92, Indels: 93
0.79 0.10 0.11
Matches are distributed among these distances:
75 13 0.02
76 2 0.00
78 8 0.01
79 16 0.02
80 10 0.01
81 11 0.02
82 16 0.02
83 19 0.03
84 3 0.00
85 1 0.00
86 340 0.49
87 56 0.08
88 195 0.28
89 8 0.01
90 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (85 bp):
CAAGAAGGCAAGATCTGCTTCTTCAACCAGCTCCACTACAACCAATGAAGGCAAGGTTTGTTTTC
GATCTGCTTCGCTGTTAATG
Found at i:36573026 original size:75 final size:75
Alignment explanation
Indices: 36572903--36573050 Score: 269
Period size: 75 Copynumber: 2.0 Consensus size: 75
36572893 TGCTATCTTC
* *
36572903 AACCAGCTCCACTGCAACCAATGAAGGCAATGCTTTGTTTTCAATCTGCTTTGCTGTTAATGCAG
1 AACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCAATCTGCTTTGCTGTTAATACAG
36572968 GAAGGCAATT
66 GAAGGCAATT
*
36572978 AACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCAATCTGCTTTGTTGTTAATACAG
1 AACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCAATCTGCTTTGCTGTTAATACAG
36573043 GAAGGCAA
66 GAAGGCAA
36573051 GATCTGCTTC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (75 bp):
AACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCAATCTGCTTTGCTGTTAATACAG
GAAGGCAATT
Found at i:36573090 original size:43 final size:42
Alignment explanation
Indices: 36573043--36573352 Score: 155
Period size: 43 Copynumber: 7.2 Consensus size: 42
36573033 GTTAATACAG
*
36573043 GAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAAT
1 GAAGGCAAGATCTGCTT-TTTAACCAGCTCCACTGCAACCAAT
* * ** * * * * * *
36573086 GAAGGCAAGGCTTTG-TTTTCGATCTGCTTCGCTGTTAATGCAA-
1 GAAGGCAA-GATCTGCTTTTTAACCAGCTCCACTG-CAA-CCAAT
*
36573129 GAAAGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAAT
1 GAAGGCAAGATCTGCTT-TTTAACCAGCTCCACTGCAACCAAT
* * ** * * *** * *
36573172 GAAGGCAAGGCTTTG-TTTTCGATCTGCTTTGCTGTTAATGCAA-
1 GAAGGCAA-GATCTGCTTTTTAACCAGCTCCACTG-CAA-CCAAT
36573215 GAAGGCAAGATCTGCTTTTTTAACCAGCTCCACTGCAACCAAT
1 GAAGGCAAGATCTGC-TTTTTAACCAGCTCCACTGCAACCAAT
* * ** * * * * * * *
36573258 GAAGGCAAGGCTTTG-TTTTCGATCTGCTTCGCTGTTAATGC-AG
1 GAAGGCAA-GATCTGCTTTTTAACCAGCTCCACTG-CAA-CCAAT
36573301 GAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAAT
1 GAAGGCAAGATCTGCTT-TTTAACCAGCTCCACTGCAACCAAT
36573344 GAAGGCAAG
1 GAAGGCAAG
36573353 GCTTTGTTTT
Statistics
Matches: 182, Mismatches: 67, Indels: 36
0.64 0.24 0.13
Matches are distributed among these distances:
42 52 0.29
43 77 0.42
44 53 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (42 bp):
GAAGGCAAGATCTGCTTTTTAACCAGCTCCACTGCAACCAAT
Found at i:36573262 original size:172 final size:172
Alignment explanation
Indices: 36572976--36573452 Score: 828
Period size: 172 Copynumber: 2.8 Consensus size: 172
36572966 AGGAAGGCAA
* * *
36572976 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCAATCTGCTTTGTTGTTAATAC
1 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGC
36573041 AGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTC
66 AGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTC
36573106 GATCTGCTTCGCTGTTAATGCAAGAAAGCAAGATCTGCTTCT
131 GATCTGCTTCGCTGTTAATGCAAGAAAGCAAGATCTGCTTCT
36573148 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGC
1 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGC
* * *
36573213 AAGAAGGCAAGATCTGCTTTTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTC
66 AGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTC
* *
36573278 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTTCT
131 GATCTGCTTCGCTGTTAATGCAAGAAAGCAAGATCTGCTTCT
* *
36573320 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGT
1 TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGC
* * * *
36573385 AGGAAGGCAAGATCTACTTCTTTAACTAGCTTCACTACAACCAATGAAGGCAAGGCTTGGTTTTC
66 AGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTC
36573450 GAT
131 GAT
36573453 GTTCACTGAT
Statistics
Matches: 288, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
172 288 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (172 bp):
TTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGC
AGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTC
GATCTGCTTCGCTGTTAATGCAAGAAAGCAAGATCTGCTTCT
Found at i:36573321 original size:258 final size:247
Alignment explanation
Indices: 36572753--36573452 Score: 994
Period size: 258 Copynumber: 2.8 Consensus size: 247
36572743 CAACCGAGAG
* * * ** *
36572753 AGGCAAGG-TTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
1 AGGCAAGGCTTTGT-T-TTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCT-TCTTT
* *
36572817 AACCAGCTCCA-TCACAACCGA-GAGAGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAACGC
63 AACCAGCTCCACT-ACAACCAATGA-AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGC
* *
36572879 AAGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTGCAACCAATGAAGGCAATGCTTTGTTTT
126 AAGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTT
* *
36572944 CAATCTGCTTTGCTGTTAATGCAGGAAGGCAATTAACCAGCTCCACTGCAACCAATGA
190 CGATCTGCTTTGCTGTTAATGCAAGAAGGCAATTAACCAGCTCCACTGCAACCAATGA
* * *
36573002 AGGCAAGGCTTTGTTTTCAATCTGCTTTGTTGTTAATACAGGAAGGCAAGATCTGCTTCTTTAAC
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTTCTTTAAC
36573067 CAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAA
66 CAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAA
*
36573132 AGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCT
131 GGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCT
36573197 GCTTTGCTGTTAATGCAAGAAGGCAAGATCTGCTTTTTTAACCAGCTCCACTGCAACCAATGA
196 GCTTTGCTGTTAATGCAAGAAGGC-A-A---------TTAACCAGCTCCACTGCAACCAATGA
*
36573260 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTTCTTTAAC
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTTCTTTAAC
* * *
36573325 CAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGTAGGAA
66 CAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAA
* * * * *
36573390 GGCAAGATCTACTTCTTTAACTAGCTTCACTACAACCAATGAAGGCAAGGCTTGGTTTTCGAT
131 GGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGAT
36573453 GTTCACTGAT
Statistics
Matches: 407, Mismatches: 29, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
247 102 0.25
248 84 0.21
249 10 0.02
250 5 0.01
258 206 0.51
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (247 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTTCTTTAAC
CAGCTCCACTACAACCAATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAA
GGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAACCAATGAAGGCAAGGCTTTGTTTTCGATCT
GCTTTGCTGTTAATGCAAGAAGGCAATTAACCAGCTCCACTGCAACCAATGA
Found at i:36573391 original size:43 final size:43
Alignment explanation
Indices: 36573086--36573395 Score: 134
Period size: 43 Copynumber: 7.2 Consensus size: 43
36573076 TACAACCAAT
36573086 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAA-
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATG-AAG
* * * ** * * * * * ** *
36573129 GAAAGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-CAACCAAT
1 GAAGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAATGAAG
*
36573172 GAAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGCAA-
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATG-AAG
* * * * * * * ** *
36573215 GAAGGCAAGATCTGCTT-TTTT-AACCAGCTCCACTG-CAACCAAT
1 GAAGGCAAG-GCT--TTGTTTTCGATCTGCTTCGCTGTTAATGAAG
*
36573258 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGAAG
* * ** * * * * * ** *
36573301 GAAGGCAA-GATCTGCTTCTTTAACCAGCTCCACTG-CAACCAAT
1 GAAGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAATGAAG
*
36573344 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGTAG
1 GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGAAG
36573387 GAAGGCAAG
1 GAAGGCAAG
36573396 ATCTACTTCT
Statistics
Matches: 178, Mismatches: 72, Indels: 34
0.63 0.25 0.12
Matches are distributed among these distances:
40 2 0.01
41 4 0.02
42 44 0.25
43 80 0.45
44 42 0.24
45 4 0.02
46 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
GAAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGAAG
Found at i:36574560 original size:21 final size:21
Alignment explanation
Indices: 36574534--36574580 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
36574524 GGTATAGCAA
36574534 GATCACCACATGCCCCAATCT
1 GATCACCACATGCCCCAATCT
*** *
36574555 GATCACTTTATGCCCCATTCT
1 GATCACCACATGCCCCAATCT
36574576 GATCA
1 GATCA
36574581 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.11, T:0.28
Consensus pattern (21 bp):
GATCACCACATGCCCCAATCT
Found at i:36574685 original size:8 final size:8
Alignment explanation
Indices: 36574674--36574741 Score: 88
Period size: 8 Copynumber: 8.6 Consensus size: 8
36574664 CCATTTTTAC
36574674 TTTTTCAT
1 TTTTTCAT
36574682 TTTTTCAT
1 TTTTTCAT
36574690 TTTTTCA-
1 TTTTTCAT
36574697 TTTTTCAT
1 TTTTTCAT
36574705 TTTTTCAT
1 TTTTTCAT
36574713 CTTTTT--T
1 -TTTTTCAT
36574720 TTTTTCAT
1 TTTTTCAT
*
36574728 TTTCATCAT
1 TTT-TTCAT
36574737 TTTTT
1 TTTTT
36574742 TGACTCAAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
6 5 0.09
7 8 0.15
8 28 0.53
9 12 0.23
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTCAT
Found at i:36574692 original size:15 final size:15
Alignment explanation
Indices: 36574665--36574741 Score: 86
Period size: 15 Copynumber: 5.0 Consensus size: 15
36574655 TTAGCCTCTC
*
36574665 CATTTTT-ACTTTTT
1 CATTTTTCATTTTTT
36574679 CATTTTTTCATTTTTT
1 CA-TTTTTCATTTTTT
36574695 CATTTTTCATTTTTT
1 CATTTTTCATTTTTT
*
36574710 CATCTTTT-TTTTTTT
1 CAT-TTTTCATTTTTT
36574725 CATTTTCATCATTTTTT
1 CATTTT--TCATTTTTT
36574742 TGACTCAAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
14 5 0.09
15 30 0.56
16 13 0.24
17 6 0.11
ACGTcount: A:0.13, C:0.14, G:0.00, T:0.73
Consensus pattern (15 bp):
CATTTTTCATTTTTT
Found at i:36574700 original size:23 final size:22
Alignment explanation
Indices: 36574665--36574741 Score: 100
Period size: 23 Copynumber: 3.4 Consensus size: 22
36574655 TTAGCCTCTC
*
36574665 CATTTTTACTTTTTCATTTTTT
1 CATTTTTTCTTTTTCATTTTTT
36574687 CATTTTTTCATTTTTCATTTTTT
1 CATTTTTTC-TTTTTCATTTTTT
* *
36574710 CATCTTTTTTTTTTTCATTTTCAT
1 CAT-TTTTTCTTTTTCATTTT-TT
36574734 CATTTTTT
1 CATTTTTT
36574742 TGACTCAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.16
23 32 0.65
24 9 0.18
ACGTcount: A:0.13, C:0.14, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTTTCTTTTTCATTTTTT
Found at i:36575632 original size:24 final size:23
Alignment explanation
Indices: 36575599--36575700 Score: 80
Period size: 24 Copynumber: 4.2 Consensus size: 23
36575589 TGACCTCTCC
*
36575599 TTTTTCTTTTTTTTTTCTTCTTTT
1 TTTTTATTTTTTTTTTCTT-TTTT
** *
36575623 TTTTTATTTTTTTTGACTTCGATTT
1 TTTTTATTTTTTTTTTCTT--TTTT
*
36575648 TTTTTATTTTTGTTTTTGTTTTTT
1 TTTTTATTTTT-TTTTTCTTTTTT
* *
36575672 TGGTTTT-TTTTGTTTTTCCTTTTT
1 T--TTTTATTTTTTTTTTCTTTTTT
36575696 TTTTT
1 TTTTT
36575701 GAGTCTGAAC
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
22 4 0.06
24 31 0.50
25 18 0.29
26 9 0.15
ACGTcount: A:0.04, C:0.07, G:0.07, T:0.82
Consensus pattern (23 bp):
TTTTTATTTTTTTTTTCTTTTTT
Found at i:36575681 original size:10 final size:9
Alignment explanation
Indices: 36575646--36575701 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
36575636 TGACTTCGAT
*
36575646 TTTTTTTATT
1 TTTTTTT-TG
36575656 TTTGTTTTTG
1 TTT-TTTTTG
*
36575666 TTTTTTTGG
1 TTTTTTTTG
36575675 TTTTTTTTG
1 TTTTTTTTG
*
36575684 TTTTTCCTT-
1 TTTTT-TTTG
36575693 TTTTTTTTG
1 TTTTTTTTG
36575702 AGTCTGAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 2 0.05
9 23 0.61
10 9 0.24
11 4 0.11
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.84
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:36575701 original size:18 final size:16
Alignment explanation
Indices: 36575599--36575700 Score: 55
Period size: 16 Copynumber: 6.0 Consensus size: 16
36575589 TGACCTCTCC
*
36575599 TTTTTCTTTTTTTTTT
1 TTTTTGTTTTTTTTTT
*
36575615 CTTCTTT-TTTTTTATTT
1 -TT-TTTGTTTTTTTTTT
36575632 TTTTTGACTTCGATTTTTTTT
1 TTTTTG--TT---TTTTTTTT
*
36575653 ATTTTTG-TTTTTGTTT
1 -TTTTTGTTTTTTTTTT
* *
36575669 TTTTGGTTTTTTTTGT
1 TTTTTGTTTTTTTTTT
**
36575685 TTTTCCTTTTTTTTTT
1 TTTTTGTTTTTTTTTT
36575701 GAGTCTGAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
15 8 0.12
16 29 0.43
17 11 0.16
18 5 0.07
19 1 0.01
21 7 0.10
22 6 0.09
ACGTcount: A:0.04, C:0.07, G:0.07, T:0.82
Consensus pattern (16 bp):
TTTTTGTTTTTTTTTT
Found at i:36580178 original size:217 final size:218
Alignment explanation
Indices: 36579746--36580263 Score: 889
Period size: 217 Copynumber: 2.4 Consensus size: 218
36579736 AATTTGGCTA
*
36579746 AACGTGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
* * *
36579811 TTATTTTGAAAATTTTTGAAAAGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAG
66 TTATTTTGAAAATTTTTGAAAAGGATATTTAGCTATTCGGTCGAACGAG-AAAATCGAAACCCAG
* *
36579876 TACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGA
130 TACCTTAGGGCACGTTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGA
*
36579941 AAAGGATATTAAGTCATTTGGTCG
195 AAAGAATATTAAGTCATTTGGTCG
*
36579965 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
36580030 TTATTTTTGAAAAGTTTTT-AAAAGGATATTTAGCTATTCGGTCGAACGAG-AAATCGAAACCCA
66 TTA-TTTTGAAAA-TTTTTGAAAAGGATATTTAGCTATTCGGTCGAACGAGAAAATCGAAACCCA
*
36580093 GTACCTTAGGGCACG-TTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTG
129 GTACCTTAGGGCACGTTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTG
36580157 AAAAGAATATTAAGTCATTTGGTCG
194 AAAAGAATATTAAGTCATTTGGTCG
*
36580182 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCAAATTTCCAAACGCAAAATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
36580247 TTATTTTGAAATATTTT
66 TTATTTTGAAA-ATTTT
36580264 CCTTTTTTGA
Statistics
Matches: 285, Mismatches: 11, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
216 12 0.04
217 138 0.48
218 26 0.09
219 66 0.23
220 38 0.13
221 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
TTATTTTGAAAATTTTTGAAAAGGATATTTAGCTATTCGGTCGAACGAGAAAATCGAAACCCAGT
ACCTTAGGGCACGTTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAA
AAGAATATTAAGTCATTTGGTCG
Found at i:36580227 original size:108 final size:108
Alignment explanation
Indices: 36579724--36580263 Score: 836
Period size: 108 Copynumber: 5.0 Consensus size: 108
36579714 AAAATTCAAG
* * * *
36579724 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
36579788 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* * * * *
36579832 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGTACCTTAGGGCATGTTTTCTC
1 AGGATATTAAGCTATTTGGTCGAACGAG--AAATCGAAACCCAGTACCTTAGGGCACG-TTCCTC
*
36579897 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
63 GAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
36579943 AGGATATTAAG-TCATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
36580007 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTT-AAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAA-TTTTTGAAA
* *
36580052 AGGATATTTAGCTATTCGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
36580117 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
* *
36580160 AGAATATTAAG-TCATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCAA
1 AGGATATTAAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
36580224 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAATATTTT
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAA-ATTTT
36580264 CCTTTTTTGA
Statistics
Matches: 401, Mismatches: 20, Indels: 21
0.91 0.05 0.05
Matches are distributed among these distances:
107 6 0.01
108 160 0.40
109 128 0.32
110 33 0.08
111 74 0.18
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (108 bp):
AGGATATTAAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAA
Found at i:36580260 original size:18 final size:17
Alignment explanation
Indices: 36580237--36580278 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
36580227 TCCAAACGCA
36580237 AAATATTGCCTTATTTTG
1 AAATATTGCCTT-TTTTG
*
36580255 AAATATTTTCCTTTTTTG
1 AAATA-TTGCCTTTTTTG
36580273 AAATAT
1 AAATAT
36580279 GAAGTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (17 bp):
AAATATTGCCTTTTTTG
Found at i:36580401 original size:4 final size:4
Alignment explanation
Indices: 36580392--36580489 Score: 63
Period size: 4 Copynumber: 22.8 Consensus size: 4
36580382 ATACAACAAC
* * ** * *
36580392 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAC ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
36580440 AAAT AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAAT AAAAT AAA
1 AAAT AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT AAAT -AAAT AAA
36580490 ATAATAATAA
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
3 2 0.03
4 45 0.59
5 24 0.32
6 5 0.07
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:36580469 original size:10 final size:9
Alignment explanation
Indices: 36580392--36580521 Score: 76
Period size: 8 Copynumber: 14.3 Consensus size: 9
36580382 ATACAACAAC
36580392 AAATAAAT-
1 AAATAAATA
36580400 AAATAAATA
1 AAATAAATA
*
36580409 AACT-AA-A
1 AAATAAATA
*
36580416 ACATAAA-A
1 AAATAAATA
*
36580424 AAATGGACATA
1 AAAT--AAATA
36580435 TAAATAAAT-
1 -AAATAAATA
36580444 AAATAAATGA
1 AAATAAAT-A
*
36580454 ACATAAAGTA
1 AAATAAA-TA
36580464 AAATAAAATA
1 AAAT-AAATA
36580474 AAATAAATA
1 AAATAAATA
36580483 AAATAAA-A
1 AAATAAATA
*
36580491 TAAT-AATA
1 AAATAAATA
*
36580499 ACAATAAAGGA
1 A-AATAAA-TA
*
36580510 AAATAGATA
1 AAATAAATA
36580519 AAA
1 AAA
36580522 ATCATAAAAT
Statistics
Matches: 95, Mismatches: 13, Indels: 27
0.70 0.10 0.20
Matches are distributed among these distances:
7 5 0.05
8 29 0.31
9 22 0.23
10 28 0.29
11 7 0.07
12 4 0.04
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (9 bp):
AAATAAATA
Found at i:36580469 original size:20 final size:18
Alignment explanation
Indices: 36580392--36580521 Score: 76
Period size: 20 Copynumber: 7.2 Consensus size: 18
36580382 ATACAACAAC
36580392 AAATAAAT-AAATAAATA
1 AAATAAATAAAATAAATA
* *
36580409 AACT-AA-AACATAAA-A
1 AAATAAATAAAATAAATA
*
36580424 AAATGGACATATAAATAAAT-
1 AAAT--AAATA-AAATAAATA
*
36580444 AAATAAATGAACATAAAGTA
1 AAATAAAT-AAAATAAA-TA
36580464 AAATAAAATAAAATAAATA
1 AAAT-AAATAAAATAAATA
*
36580483 AAATAAA-ATAAT-AATA
1 AAATAAATAAAATAAATA
* *
36580499 ACAATAAAGGAAAATAGATA
1 A-AATAAA-TAAAATAAATA
36580519 AAA
1 AAA
36580522 ATCATAAAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
15 4 0.05
16 13 0.15
17 13 0.15
18 13 0.15
19 15 0.17
20 25 0.29
21 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (18 bp):
AAATAAATAAAATAAATA
Found at i:36580504 original size:6 final size:5
Alignment explanation
Indices: 36580436--36580506 Score: 69
Period size: 5 Copynumber: 14.4 Consensus size: 5
36580426 ATGGACATAT
* *
36580436 AAAT- AAAT- AAAT- AAATGA ACATA AAGTA AAATA AAATA AAAT- AAATA
1 AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAATA AAATA AAATA
36580483 AAATA AAATA ATAATA ACAATA AA
1 AAATA AAATA A-AATA A-AATA AA
36580507 GGAAAATAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
4 16 0.28
5 29 0.50
6 13 0.22
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:36580858 original size:3 final size:3
Alignment explanation
Indices: 36580850--36580884 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36580840 AAAATACAAC
* *
36580850 TAA TAA TAA TAA TAG TAA TAA TAA TAG TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36580885 TGAAATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36580868 original size:12 final size:12
Alignment explanation
Indices: 36580853--36580884 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
36580843 ATACAACTAA
36580853 TAATAATAATAG
1 TAATAATAATAG
36580865 TAATAATAATAG
1 TAATAATAATAG
36580877 TAATAATA
1 TAATAATA
36580885 TGAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:36582221 original size:2 final size:2
Alignment explanation
Indices: 36582214--36582266 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
36582204 AAGTGAAATA
*
36582214 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
36582256 AG AG AG AG AG A
1 AG AG AG AG AG A
36582267 CCCTTATGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:36584305 original size:73 final size:72
Alignment explanation
Indices: 36584183--36584319 Score: 202
Period size: 73 Copynumber: 1.9 Consensus size: 72
36584173 GCGTCGTTTT
* * * *
36584183 TGAGAAATCGCCGCAAAAGACCTAAGCCCAACGACGTCGTTTCCCGAGCTTTTGGGGATTTAGCG
1 TGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTCCCGAGCTTTCGGGGATTTAGCG
36584248 GCATTTC
66 GCATTTC
***
36584255 TGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTGTGAGCTTTCGGGGATTTAGC
1 TGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTCCCGAGCTTTCGGGGATTTAGC
36584320 TGTGTTTTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
72 13 0.23
73 44 0.77
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22
Consensus pattern (72 bp):
TGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTCCCGAGCTTTCGGGGATTTAGCG
GCATTTC
Found at i:36584527 original size:94 final size:93
Alignment explanation
Indices: 36584377--36584554 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 93
36584367 TTCCCAAAAA
* * *
36584377 CGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTGTGAGCTTTCAGGGACTTAGCGGCGTTTT
1 CGCCGCAAAAAAACCTAAGCCCAACAACACCGTTTTGTGAGCTTTCAGGGACTTAGCGACGTTTT
36584442 TAAGAAAGCGCCACTAATGCTTTGGAAG
66 TAAGAAAGCGCCACTAATGCTTTGGAAG
* * ** *
36584470 CGCCGCAAAAAAAACCTAAGCCCAACAACACCTTTTTTTGAGCTTTTGGGGATTTAGCGACGTTT
1 CGCCGC-AAAAAAACCTAAGCCCAACAACACCGTTTTGTGAGCTTTCAGGGACTTAGCGACGTTT
36584535 TTAAGAAAGCGCCACTAATG
65 TTAAGAAAGCGCCACTAATG
36584555 TTCAGGGCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
93 6 0.08
94 70 0.92
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (93 bp):
CGCCGCAAAAAAACCTAAGCCCAACAACACCGTTTTGTGAGCTTTCAGGGACTTAGCGACGTTTT
TAAGAAAGCGCCACTAATGCTTTGGAAG
Found at i:36585025 original size:29 final size:28
Alignment explanation
Indices: 36584954--36585025 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
36584944 AGGGAAGTAT
*
36584954 GGGTTTAGGGATTATGGATTAGAGGTTG
1 GGGTTTAGGGATTAGGGATTAGAGGTTG
* * * *
36584982 GGATTTAAGGTTTAGGGGTTAGATGGTTG
1 GGGTTTAGGGATTAGGGATTAGA-GGTTG
*
36585011 GGGTTTAGGGGTTAG
1 GGGTTTAGGGATTAG
36585026 ACTGTTAAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.36
Consensus pattern (28 bp):
GGGTTTAGGGATTAGGGATTAGAGGTTG
Found at i:36585291 original size:21 final size:22
Alignment explanation
Indices: 36585265--36585306 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
36585255 TAAGAATTAT
36585265 GGTTTAAGGGTT-GGGATTTAA
1 GGTTTAAGGGTTAGGGATTTAA
* *
36585286 GGTTTAGGGGTTAGGGGTTTA
1 GGTTTAAGGGTTAGGGATTTA
36585307 GGAGTTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGATTTAA
Found at i:36585306 original size:15 final size:15
Alignment explanation
Indices: 36585285--36585327 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36585275 TTGGGATTTA
36585285 AGGTTTAGGGGTTAG
1 AGGTTTAGGGGTTAG
* *
36585300 GGGTTTAGGAGTTAG
1 AGGTTTAGGGGTTAG
*
36585315 ATG-TTAGGGGTTA
1 AGGTTTAGGGGTTA
36585328 AGAGTTAGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (15 bp):
AGGTTTAGGGGTTAG
Found at i:36586154 original size:134 final size:138
Alignment explanation
Indices: 36585967--36586224 Score: 425
Period size: 135 Copynumber: 1.9 Consensus size: 138
36585957 GCATAGTTAA
36585967 AGGTAAGCAATAGCGGCGTTTTTATAAACGCCGCAAAAAATAAATCAATTTATAAAAAACAAAAT
1 AGGTAAGCAATAGCGGCGTTTTTATAAA---CGCAAAAAATAAATCAATTTATAAAAAACAAAAT
*
36586032 AAAAAA-TTTTAGAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAAATTTTGCGCATAAA
63 AAAAAATTTTTAAAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAAATTTTGCGCATAAA
36586096 AACGCTGCTAG
128 AACGCTGCTAG
*
36586107 AGGTAAGCAATAGCTGCGTTTTT-T-AA-GCAAAAAATAAATCAATTTATAAAAAACAAAATAAA
1 AGGTAAGCAATAGCGGCGTTTTTATAAACGCAAAAAATAAATCAATTTATAAAAAACAAAATAAA
* *
36586169 AAATTTTTAAAATAGCAAAACGGCGTCATTTTGTTCAAAATTAAAAAATTTTTGCG
66 AAATTTTTAAAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAAATTTTGCG
36586225 GCATTTTTCA
Statistics
Matches: 113, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
134 39 0.35
135 49 0.43
138 2 0.02
139 1 0.01
140 22 0.19
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.28
Consensus pattern (138 bp):
AGGTAAGCAATAGCGGCGTTTTTATAAACGCAAAAAATAAATCAATTTATAAAAAACAAAATAAA
AAATTTTTAAAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAAATTTTGCGCATAAAAAC
GCTGCTAG
Found at i:36589493 original size:16 final size:16
Alignment explanation
Indices: 36589472--36589505 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
36589462 TTGCAATAAT
36589472 GGATTTAA-ATGGTTTG
1 GGATTTAATAT-GTTTG
36589488 GGATTTAATATGTTTG
1 GGATTTAATATGTTTG
36589504 GG
1 GG
36589506 TTGAACATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (16 bp):
GGATTTAATATGTTTG
Found at i:36590397 original size:46 final size:43
Alignment explanation
Indices: 36590284--36590397 Score: 110
Period size: 46 Copynumber: 2.7 Consensus size: 43
36590274 CTTACATAAC
*
36590284 AACTTAACAACTCACATAATTT--AT-ATATGTCATACCATAT
1 AACTTAACAACTCACATAATTTCCATAATATGTCATAACATAT
* * * * *
36590324 AACTTAATAACTTATATAA-TTCACATAATAATTTACATAACTTAAT
1 AACTTAACAACTCACATAATTTC-CATAAT-ATGT-CATAACAT-AT
36590370 AACTTAACAACTCACATAATTTCCATAA
1 AACTTAACAACTCACATAATTTCCATAA
36590398 CTTAATAATT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
39 2 0.04
40 16 0.28
42 2 0.04
43 2 0.04
44 3 0.05
45 6 0.11
46 23 0.40
47 3 0.05
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (43 bp):
AACTTAACAACTCACATAATTTCCATAATATGTCATAACATAT
Found at i:36590405 original size:17 final size:16
Alignment explanation
Indices: 36590349--36590408 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
36590339 ATAATTCACA
36590349 TAATAATTTACATAACT
1 TAATAATTT-CATAACT
* * *
36590366 TAATAACTTAACAACT
1 TAATAATTTCATAACT
*
36590382 CACATAATTTCCATAACT
1 TA-ATAATTT-CATAACT
36590400 TAATAATTT
1 TAATAATTT
36590409 TAAAATATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
16 6 0.18
17 21 0.64
18 6 0.18
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATAATTTCATAACT
Found at i:36590456 original size:77 final size:77
Alignment explanation
Indices: 36590367--36590644 Score: 201
Period size: 77 Copynumber: 3.4 Consensus size: 77
36590357 TACATAACTT
36590367 AATAACTTAACAACTCACATAATTTCCATAACTTAATAATTTTAAAATATATCATTCCATAACTT
1 AATAACTTAACAACTCACATAATTT-CATAACTTAATAATTTTAAAATATATCATTCCATAACTT
36590432 ACAAATTAAATAC
65 ACAAATTAAATAC
* * ** *
36590445 AATAA-TTAACAACTCACATAACTTAATAGGTT-ATACATGTTATATCATAACTCACATAATAAC
1 AATAACTTAACAACTCACATAATTTCATAACTTAATA-AT-TT-TA--A-AA-T---AT-ATCA-
*
36590508 TTACATAACTTA-ATAACTTATATATATGC
54 TTCCATAACTTACA-AA-TTA-A-ATA--C
* * * * *
36590537 -ATAACTTAATAACTCATATTATTTACATAACTTAATCATTGTAAAATATATCATTCCATAACTT
1 AATAACTTAACAACTCACATAATTT-CATAACTTAATAATTTTAAAATATATCATTCCATAACTT
36590601 ACAAATTAAATAC
65 ACAAATTAAATAC
* *
36590614 AATAA-TTAATAACAT-ACATAA-TACATAACTT
1 AATAACTTAACAAC-TCACATAATTTCATAACTT
36590645 TTCAACTATT
Statistics
Matches: 156, Mismatches: 20, Indels: 51
0.69 0.09 0.22
Matches are distributed among these distances:
75 11 0.07
76 8 0.05
77 33 0.21
78 12 0.08
79 3 0.02
80 2 0.01
81 5 0.03
82 14 0.09
83 4 0.03
84 2 0.01
85 2 0.01
86 4 0.03
87 14 0.09
88 5 0.03
89 2 0.01
90 3 0.02
91 6 0.04
92 17 0.11
93 7 0.04
94 2 0.01
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (77 bp):
AATAACTTAACAACTCACATAATTTCATAACTTAATAATTTTAAAATATATCATTCCATAACTTA
CAAATTAAATAC
Found at i:36590523 original size:17 final size:17
Alignment explanation
Indices: 36590501--36590572 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
36590491 ATAACTCACA
36590501 TAATAACTTACATAACT
1 TAATAACTTACATAACT
*
36590518 TAATAACTTATATATA-T
1 TAATAACTTACATA-ACT
**
36590535 GCATAACTTA-ATAACT
1 TAATAACTTACATAACT
* * *
36590551 CATATTATTTACATAACT
1 TA-ATAACTTACATAACT
36590569 TAAT
1 TAAT
36590573 CATTGTAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.09
17 30 0.70
18 8 0.19
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.40
Consensus pattern (17 bp):
TAATAACTTACATAACT
Found at i:36590545 original size:25 final size:26
Alignment explanation
Indices: 36590509--36590572 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 26
36590499 CATAATAACT
*
36590509 TACATAACTTAATAACTTATA-TATA
1 TACATAACTTAATAACTCATATTATA
* *
36590534 TGCATAACTTAATAACTCATATTATT
1 TACATAACTTAATAACTCATATTATA
36590560 TACATAACTTAAT
1 TACATAACTTAAT
36590573 CATTGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (26 bp):
TACATAACTTAATAACTCATATTATA
Found at i:36591143 original size:43 final size:43
Alignment explanation
Indices: 36591079--36591171 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
36591069 ACCAAACAAT
* * * *
36591079 AGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGAACATGGCCTTC
1 AGCGGCGGTTGCGGGAAAAGCGCCGCTAAAGAACATGACCTTC
*
36591122 AGCGGCGGTTGCGGGAAAAGCGCCGCTAAAGAACATGACCTTT
1 AGCGGCGGTTGCGGGAAAAGCGCCGCTAAAGAACATGACCTTC
36591165 AGCGGCG
1 AGCGGCG
36591172 CTTTCAAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.25, C:0.24, G:0.35, T:0.16
Consensus pattern (43 bp):
AGCGGCGGTTGCGGGAAAAGCGCCGCTAAAGAACATGACCTTC
Found at i:36592001 original size:42 final size:42
Alignment explanation
Indices: 36591944--36592062 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
36591934 GTTTACAAAC
* *
36591944 AAAAACACCGCTAAAGACCATGTTCTTTAGTGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGAGGCGCTTAGAA
*
36591986 AAAAACGCCGCTAAAGACCATGTTCTTTAGAGGCGCTTAGAG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGAGGCGCTTAGAA
* *
36592028 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGAGGCG
36592063 TTTTTTCCTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGAGGCGCTTAGAA
Found at i:36592115 original size:38 final size:39
Alignment explanation
Indices: 36592049--36592144 Score: 149
Period size: 38 Copynumber: 2.5 Consensus size: 39
36592039 TAAAGATCAT
*
36592049 GTTCTTTAGCGGCGTTTTTTCCTTAAGCGTCGCTAAAGA
1 GTTCTTTAGCGGCGTTTTTTCCTTAAGCGCCGCTAAAGA
*
36592088 GTTCTTTAGCGGCGTTTTTTTC-TAAGCGCCGCTAAAGA
1 GTTCTTTAGCGGCGTTTTTTCCTTAAGCGCCGCTAAAGA
* *
36592126 ATTCTTTAGCGGCGCTTTT
1 GTTCTTTAGCGGCGTTTTT
36592145 ATACAAAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 32 0.60
39 21 0.40
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.40
Consensus pattern (39 bp):
GTTCTTTAGCGGCGTTTTTTCCTTAAGCGCCGCTAAAGA
Found at i:36592490 original size:21 final size:21
Alignment explanation
Indices: 36592461--36592506 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
36592451 TTTTGGTCTG
* * *
36592461 CTCTGCTTCTCTCGTTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
*
36592482 CTCTACTTCCCTCGCTGCCGC
1 CTCTACTTCCCTCGCTGCAGC
36592503 CTCT
1 CTCT
36592507 GCTTTAAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.04, C:0.46, G:0.15, T:0.35
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:36597985 original size:9 final size:9
Alignment explanation
Indices: 36597971--36598522 Score: 417
Period size: 9 Copynumber: 66.2 Consensus size: 9
36597961 AAGTTATACA
36597971 TTATGTAAG
1 TTATGTAAG
36597980 TTATGTAAG
1 TTATGTAAG
36597989 TTATGTAAG
1 TTATGTAAG
*
36597998 TTGTGTAAG
1 TTATGTAAG
*
36598007 TTGTGTAAG
1 TTATGTAAG
*
36598016 TTGTGT-A-
1 TTATGTAAG
* *
36598023 TTATGAAAC
1 TTATGTAAG
36598032 TTATGTAAG
1 TTATGTAAG
*
36598041 TTGTGTAAG
1 TTATGTAAG
*
36598050 TTGTGT-A-
1 TTATGTAAG
* *
36598057 TTATGAAAC
1 TTATGTAAG
36598066 TTATGTAAG
1 TTATGTAAG
*
36598075 TTATGT--C
1 TTATGTAAG
36598082 TTATGTAAG
1 TTATGTAAG
*
36598091 TTATGTAAA
1 TTATGTAAG
36598100 TTATGT-A-
1 TTATGTAAG
36598107 TTATGTAAG
1 TTATGTAAG
36598116 TTATGTAAG
1 TTATGTAAG
*
36598125 TTGTGT-A-
1 TTATGTAAG
36598132 TTATGTAAG
1 TTATGTAAG
36598141 TTATGTTAA-
1 TTATG-TAAG
36598150 TTATGT-A-
1 TTATGTAAG
36598157 TTATGTAAG
1 TTATGTAAG
36598166 TTATGTAAG
1 TTATGTAAG
36598175 -T-TGT--G
1 TTATGTAAG
36598180 TTATGTAAG
1 TTATGTAAG
*
36598189 TTATGTTAG
1 TTATGTAAG
*
36598198 TTGTGT-A-
1 TTATGTAAG
36598205 TTATGTAAG
1 TTATGTAAG
*
36598214 TTATGCAAG
1 TTATGTAAG
36598223 TTATGT-A-
1 TTATGTAAG
* *
36598230 TTAAGTAGG
1 TTATGTAAG
36598239 TTATGTAAG
1 TTATGTAAG
36598248 TTATGT-A-
1 TTATGTAAG
36598255 TTATGTAAG
1 TTATGTAAG
36598264 TTATGTAAG
1 TTATGTAAG
*
36598273 TTGTGT-A-
1 TTATGTAAG
36598280 TTATGTAAG
1 TTATGTAAG
*
36598289 TTATGTAAA
1 TTATGTAAG
*
36598298 TTGTGT--G
1 TTATGTAAG
36598305 TTACT-TACA-
1 TTA-TGTA-AG
*
36598314 -CATGTAAG
1 TTATGTAAG
*
36598322 TTGTGT-A-
1 TTATGTAAG
36598329 TTATGTAAG
1 TTATGTAAG
*
36598338 TTATGCAAG
1 TTATGTAAG
36598347 TTATGT-A-
1 TTATGTAAG
* *
36598354 TTAAGTAGG
1 TTATGTAAG
36598363 TTATGTAAG
1 TTATGTAAG
36598372 TTATGT-A-
1 TTATGTAAG
36598379 TTATGTAAG
1 TTATGTAAG
36598388 TTATGTAAG
1 TTATGTAAG
*
36598397 TTGTGT-A-
1 TTATGTAAG
36598404 TTATGTAAG
1 TTATGTAAG
*
36598413 TTATGTAAA
1 TTATGTAAG
*
36598422 TTGTGT-A-
1 TTATGTAAG
*
36598429 TTATTTACA-
1 TTATGTA-AG
* *
36598438 -CATATAAG
1 TTATGTAAG
*
36598446 TTGTGT-A-
1 TTATGTAAG
36598453 TTATGTAAG
1 TTATGTAAG
*
36598462 TTATGCAAG
1 TTATGTAAG
36598471 TTATGT-A-
1 TTATGTAAG
* *
36598478 TTAAGTAGG
1 TTATGTAAG
36598487 TTATGTAAG
1 TTATGTAAG
36598496 TTATGT-A-
1 TTATGTAAG
36598503 TTATGTAAG
1 TTATGTAAG
36598512 TTATGTAAG
1 TTATGTAAG
36598521 TT
1 TT
36598523 TTTGTTTTTG
Statistics
Matches: 435, Mismatches: 58, Indels: 100
0.73 0.10 0.17
Matches are distributed among these distances:
5 1 0.00
6 1 0.00
7 106 0.24
8 39 0.09
9 285 0.66
10 3 0.01
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36598027 original size:34 final size:34
Alignment explanation
Indices: 36598010--36598586 Score: 258
Period size: 34 Copynumber: 16.8 Consensus size: 34
36598000 GTGTAAGTTG
* * *
36598010 TGTAAGTTGTGTATTATGAAACTTATGTAAGTTG
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
* *
36598044 TGTAAGTTGTGTATTATGAAACTTATGTAAGTTATGTCTTA
1 TGTAAGTTGTGTATTATGTAAGTTATGT-A---A-G--TTA
*
36598085 TGTAAGTTATGTAAATTATGT-A-TTATGTAAGTTA
1 TGTAAGTTGTGT--ATTATGTAAGTTATGTAAGTTA
36598119 TGTAAGTTGTGTATTATGTAAGTTATGTTAA-TTA
1 TGTAAGTTGTGTATTATGTAAGTTATG-TAAGTTA
*
36598153 TGT-A-TTATGTAAGTTATGTAAG-T-TGT--GTTA
1 TGTAAGTTGTGT-A-TTATGTAAGTTATGTAAGTTA
* *
36598183 TGTAAGTTATGTTAGTTGTGT-A-TTATGTAAGTTA
1 TGTAAGTTGTG-TA-TTATGTAAGTTATGTAAGTTA
* * * *
36598217 TGCAAGTTATGTATTAAGTAGGTTATGTAAGTTA
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
* *
36598251 TGT-A-TTATGTAAGTTATGTAAGTTGTGT-A-TTA
1 TGTAAGTTGTGT-A-TTATGTAAGTTATGTAAGTTA
* * *
36598283 TGTAAGTTATGTAAATTGTGT--GTTACT-TACA--CA
1 TGTAAGTTGTGT--ATTATGTAAGTTA-TGTA-AGTTA
*
36598316 TGTAAGTTGTGTATTATGTAAGTTATGCAAGTTA
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
*
36598350 TGTATTAAGTAGGTTATGTAAGTTATGT-A-TTATGTAAGTTA
1 TG---T-A--A-GTTGTGT-A-TTATGTAAGTTATGTAAGTTA
* *
36598391 TGTAAGTTGTGTATTATGTAAGTTATGTAAATTG
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
* * ** * *
36598425 TGT-A-TTATTTACACATATAAGTTGTGT-A-TTA
1 TGTAAGTTGTGTA-TTATGTAAGTTATGTAAGTTA
* * * *
36598456 TGTAAGTTATGCAAGTTATGT-A-TTAAGTAGGTTA
1 TGTAAGTTGTG-TA-TTATGTAAGTTATGTAAGTTA
* *
36598490 TGTAAGTTATGTATTATGTAAGTTATGTAAGTTTT
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAG-TTA
** * * *
36598525 TGT-TTTTGTGTATTATGTAACTTATTTAATTTA
1 TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
* *
36598558 TGTAGGGTATGTATTATTATGTAAGTTAT
1 TGTA-AGT-TGT-GTATTATGTAAGTTAT
36598587 TATGTAAGAT
Statistics
Matches: 425, Mismatches: 57, Indels: 119
0.71 0.09 0.20
Matches are distributed among these distances:
30 6 0.01
31 15 0.04
32 74 0.17
33 55 0.13
34 182 0.43
35 13 0.03
36 4 0.01
37 17 0.04
38 3 0.01
39 1 0.00
40 2 0.00
41 38 0.09
42 3 0.01
43 12 0.03
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (34 bp):
TGTAAGTTGTGTATTATGTAAGTTATGTAAGTTA
Found at i:36598060 original size:25 final size:25
Alignment explanation
Indices: 36597980--36598522 Score: 629
Period size: 25 Copynumber: 21.8 Consensus size: 25
36597970 ATTATGTAAG
36597980 TTATGTAAGTTATGTAAGTTGTGTAA
1 TTATGTAAGTTATGTAAGTTGTGT-A
* * * *
36598006 GTTGTGTAAGTTGTGT-A-TTATGAAA
1 -TTATGTAAGTTATGTAAGTTGTG-TA
*
36598031 CTTATGTAAGTTGTGTAAGTTGTGTA
1 -TTATGTAAGTTATGTAAGTTGTGTA
* * * *
36598057 TTATGAAACTTATGTAAGTTATGTC
1 TTATGTAAGTTATGTAAGTTGTGTA
* *
36598082 TTATGTAAGTTATGTAAATTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
36598107 TTATGTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
*
36598132 TTATGTAAGTTATGTTAA-TTATGTA
1 TTATGTAAGTTATG-TAAGTTGTGTA
36598157 TTATGTAAGTTATGTAAGTTGTG--
1 TTATGTAAGTTATGTAAGTTGTGTA
*
36598180 TTATGTAAGTTATGTTAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* *
36598205 TTATGTAAGTTATGCAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* * *
36598230 TTAAGTAGGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
36598255 TTATGTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* *
36598280 TTATGTAAGTTATGTAAATTGTGTG
1 TTATGTAAGTTATGTAAGTTGTGTA
*
36598305 TTACT-TACA--CATGTAAGTTGTGTA
1 TTA-TGTA-AGTTATGTAAGTTGTGTA
* *
36598329 TTATGTAAGTTATGCAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* * *
36598354 TTAAGTAGGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
36598379 TTATGTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
*
36598404 TTATGTAAGTTATGTAAATTGTGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* * *
36598429 TTATTTACA--CATATAAGTTGTGTA
1 TTATGTA-AGTTATGTAAGTTGTGTA
* *
36598453 TTATGTAAGTTATGCAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
* * *
36598478 TTAAGTAGGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTGTGTA
36598503 TTATGTAAGTTATGTAAGTT
1 TTATGTAAGTTATGTAAGTT
36598523 TTTGTTTTTG
Statistics
Matches: 441, Mismatches: 60, Indels: 32
0.83 0.11 0.06
Matches are distributed among these distances:
23 25 0.06
24 38 0.09
25 352 0.80
26 9 0.02
27 17 0.04
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATGTAAGTTGTGTA
Found at i:36598184 original size:14 final size:14
Alignment explanation
Indices: 36598066--36598294 Score: 72
Period size: 16 Copynumber: 17.1 Consensus size: 14
36598056 ATTATGAAAC
36598066 TTATGTAAGTTATG
1 TTATGTAAGTTATG
36598080 TCTTATGTAAGTTATG
1 --TTATGTAAGTTATG
36598096 -TA---AA-TTATG
1 TTATGTAAGTTATG
* *
36598105 -TAT-TATG-TAAG
1 TTATGTAAGTTATG
*
36598116 TTATGTAAGTTGTG
1 TTATGTAAGTTATG
36598130 TATTATGTAAGTTATG
1 --TTATGTAAGTTATG
36598146 ---T-TAA-TTATG
1 TTATGTAAGTTATG
* *
36598155 -TAT-TATG-TAAG
1 TTATGTAAGTTATG
*
36598166 TTATGTAAGTTGTG
1 TTATGTAAGTTATG
36598180 TTATGTAAGTTATG
1 TTATGTAAGTTATG
*
36598194 TTAGTTGTGTATTA-TGTAAG
1 TTA----TGTA--AGT-TATG
*
36598214 TTATGCAAGTTATG
1 TTATGTAAGTTATG
*
36598228 -TAT-TAAG-TAGG
1 TTATGTAAGTTATG
36598239 TTATGTAAGTTATG
1 TTATGTAAGTTATG
* *
36598253 -TAT-TATG-TAAG
1 TTATGTAAGTTATG
*
36598264 TTATGTAAGTTGTG
1 TTATGTAAGTTATG
36598278 TATTATGTAAGTTATG
1 --TTATGTAAGTTATG
36598294 T
1 T
36598295 AAATTGTGTG
Statistics
Matches: 159, Mismatches: 24, Indels: 62
0.65 0.10 0.25
Matches are distributed among these distances:
9 12 0.08
10 5 0.03
11 17 0.11
12 18 0.11
13 21 0.13
14 30 0.19
15 1 0.01
16 43 0.27
18 4 0.03
19 1 0.01
20 7 0.04
ACGTcount: A:0.29, C:0.01, G:0.21, T:0.48
Consensus pattern (14 bp):
TTATGTAAGTTATG
Found at i:36598544 original size:124 final size:123
Alignment explanation
Indices: 36598032--36598522 Score: 720
Period size: 124 Copynumber: 4.0 Consensus size: 123
36598022 ATTATGAAAC
* * * * * *
36598032 TTATGTAAGTTGTGTAAGTTGTGTATTA-TGAAACTTATGTAAGTTATGTCTTATGTAAGTTATG
1 TTATGTAAGTTATGTAAATTGTGT-TTATTTACAC--ATGTAAGTTGTGTATTATGTAAGTTATG
* * * * * *
36598096 TAAATTATGTATTATGTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTTAA-TTATGTA
63 CAAGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATG-TAAGTTGTGTA
* * * *
36598157 TTATGTAAGTTATGTAAGTTGTG-TTATGTA-AGTTATGTTAGTTGTGTATTATGTAAGTTATGC
1 TTATGTAAGTTATGTAAATTGTGTTTATTTACA--CATGTAAGTTGTGTATTATGTAAGTTATGC
36598220 AAGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
64 AAGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
*
36598280 TTATGTAAGTTATGTAAATTGTGTGTTACTTACACATGTAAGTTGTGTATTATGTAAGTTATGCA
1 TTATGTAAGTTATGTAAATTGTGT-TTATTTACACATGTAAGTTGTGTATTATGTAAGTTATGCA
36598345 AGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
65 AGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
*
36598404 TTATGTAAGTTATGTAAATTGTGTATTATTTACACATATAAGTTGTGTATTATGTAAGTTATGCA
1 TTATGTAAGTTATGTAAATTGTGT-TTATTTACACATGTAAGTTGTGTATTATGTAAGTTATGCA
36598469 AGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTT
65 AGTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTT
36598523 TTTGTTTTTG
Statistics
Matches: 338, Mismatches: 21, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
122 3 0.01
123 102 0.30
124 205 0.61
125 27 0.08
126 1 0.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (123 bp):
TTATGTAAGTTATGTAAATTGTGTTTATTTACACATGTAAGTTGTGTATTATGTAAGTTATGCAA
GTTATGTATTAAGTAGGTTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTGTGTA
Found at i:36598588 original size:12 final size:12
Alignment explanation
Indices: 36598571--36598805 Score: 96
Period size: 12 Copynumber: 19.8 Consensus size: 12
36598561 AGGGTATGTA
36598571 TTATTATGTAAG
1 TTATTATGTAAG
36598583 TTATTATGTAAG
1 TTATTATGTAAG
*
36598595 ATATTATGTAAG
1 TTATTATGTAAG
*
36598607 ---TTATGTAGG
1 TTATTATGTAAG
* * * **
36598616 TTTTTGTTTTTG
1 TTATTATGTAAG
*
36598628 TGTATTATGTAAC
1 T-TATTATGTAAG
*
36598641 TTA-T-T-TAAT
1 TTATTATGTAAG
* *
36598650 TTATGTAGGGTATG
1 TTAT-TA-TGTAAG
36598664 TATTATTATGTAAG
1 --TTATTATGTAAG
36598678 TTATTATGTAAG
1 TTATTATGTAAG
*
36598690 ATATTATGTAAG
1 TTATTATGTAAG
36598702 ---TTATGTAAG
1 TTATTATGTAAG
* * * **
36598711 TTTTTGTTTTTG
1 TTATTATGTAAG
*
36598723 TGTATTATGTAAC
1 T-TATTATGTAAG
* *
36598736 TTATTTAATTTATG
1 TTA-TT-ATGTAAG
*
36598750 TATGTTATGT-A-
1 T-TATTATGTAAG
*
36598761 TTATTATGTCAG
1 TTATTATGTAAG
*
36598773 TTATTATGTATG
1 TTATTATGTAAG
36598785 TTATTATGTAAG
1 TTATTATGTAAG
*
36598797 TCATTATGT
1 TTATTATGT
36598806 TGGTTATGTA
Statistics
Matches: 163, Mismatches: 40, Indels: 40
0.67 0.16 0.16
Matches are distributed among these distances:
9 23 0.14
10 8 0.05
11 4 0.02
12 91 0.56
13 17 0.10
14 13 0.08
15 3 0.02
16 4 0.02
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.54
Consensus pattern (12 bp):
TTATTATGTAAG
Found at i:36598623 original size:95 final size:95
Alignment explanation
Indices: 36598501--36598797 Score: 540
Period size: 95 Copynumber: 3.1 Consensus size: 95
36598491 GTAAGTTATG
36598501 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
1 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
36598566 ATGTATTATTATGTAAGTTATTATGTAAGA
66 ATGTATTATTATGTAAGTTATTATGTAAGA
*
36598596 TATTATGTAAGTTATGTAGGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
1 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
36598661 ATGTATTATTATGTAAGTTATTATGTAAGA
66 ATGTATTATTATGTAAGTTATTATGTAAGA
* *
36598691 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTATGTT
1 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
* * *
36598756 ATGTATTATTATGTCAGTTATTATGTATGT
66 ATGTATTATTATGTAAGTTATTATGTAAGA
36598786 TATTATGTAAGT
1 TATTATGTAAGT
36598798 CATTATGTTG
Statistics
Matches: 195, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 195 1.00
ACGTcount: A:0.27, C:0.01, G:0.18, T:0.54
Consensus pattern (95 bp):
TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
ATGTATTATTATGTAAGTTATTATGTAAGA
Found at i:36598789 original size:24 final size:22
Alignment explanation
Indices: 36598754--36598818 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
36598744 TTTATGTATG
* *
36598754 TTATGTATTATTATGTCAGTTA
1 TTATGTATTATTATGTAAGTCA
36598776 TTATGTATGTTATTATGTAAGTCA
1 TTATGTA--TTATTATGTAAGTCA
**
36598800 TTATGT-TGGTTATGTAAGT
1 TTATGTATTATTATGTAAGT
36598819 TATGATATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 11 0.30
22 7 0.19
24 19 0.51
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.52
Consensus pattern (22 bp):
TTATGTATTATTATGTAAGTCA
Found at i:36598903 original size:190 final size:190
Alignment explanation
Indices: 36598501--36598861 Score: 480
Period size: 190 Copynumber: 1.9 Consensus size: 190
36598491 GTAAGTTATG
36598501 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
1 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
* ** *
36598566 ATGTATTATTATGTAAGTTATTATGTAAGATATTATGTAAGTTATGTAGGTTTTTGTTTTTGTGT
66 ATGTATTATTATGTAAGTTATTATGTAAGATATTATGTAAGTTATGTAGGTTTATGTAGTTATGT
* * * * *
36598631 ATTATGTAACTTATTTAATTTATGTAGGGTATGTATTATTATGTAAGTTATTATGTAAGA
131 ATTATGTAACTTATTTAATGTATGTAAGGTATGTATGATTATGTAAATTATAATGTAAGA
* *
36598691 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTATGTT
1 TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
* * * *
36598756 ATGTATTATTATGTCAGTTATTATGTATGTTATTATGTAAGTCATTATGTTGG-TTATGTAAGTT
66 ATGTATTATTATGTAAGTTATTATGTAAGATATTATGTAAG---TTATGTAGGTTTATGT-AGTT
* *
36598820 ATG-A-TATGATTAC-TATTT-ATGTATGTAAGTTATGATATGATT
127 ATGTATTATG-TAACTTATTTAATGTATGTAAGGTATG-TATGATT
36598862 GCTAAATTTA
Statistics
Matches: 150, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
190 114 0.76
191 15 0.10
192 9 0.06
193 12 0.08
ACGTcount: A:0.28, C:0.02, G:0.18, T:0.53
Consensus pattern (190 bp):
TATTATGTAAGTTATGTAAGTTTTTGTTTTTGTGTATTATGTAACTTATTTAATTTATGTAGGGT
ATGTATTATTATGTAAGTTATTATGTAAGATATTATGTAAGTTATGTAGGTTTATGTAGTTATGT
ATTATGTAACTTATTTAATGTATGTAAGGTATGTATGATTATGTAAATTATAATGTAAGA
Found at i:36598966 original size:20 final size:21
Alignment explanation
Indices: 36598941--36598981 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
36598931 ATGTATCAAT
36598941 TTTTAAATATATATA-TAAAA
1 TTTTAAATATATATATTAAAA
36598961 TTTTAAATATATATATTAAAA
1 TTTTAAATATATATATTAAAA
36598982 CTATATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTTAAATATATATATTAAAA
Found at i:36598975 original size:22 final size:20
Alignment explanation
Indices: 36598938--36598981 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
36598928 GTAATGTATC
*
36598938 AATTTTTAAATATATATATAA
1 AATTTTAAAATATATAT-TAA
36598959 AATTTTAAATATATATATTAA
1 AATTTTAAA-ATATATATTAA
36598980 AA
1 AA
36598982 CTATATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATTTTAAAATATATATTAA
Found at i:36599042 original size:16 final size:16
Alignment explanation
Indices: 36599021--36599072 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
36599011 TATAAATTTA
36599021 AATTATGTAAGTTATG
1 AATTATGTAAGTTATG
36599037 AATTATGTAAGTTATG
1 AATTATGTAAGTTATG
* *
36599053 TAAATTACGTAAATTATG
1 --AATTATGTAAGTTATG
36599071 AA
1 AA
36599073 ATTTGAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 18 0.56
18 14 0.44
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.40
Consensus pattern (16 bp):
AATTATGTAAGTTATG
Found at i:36599051 original size:9 final size:9
Alignment explanation
Indices: 36599019--36599075 Score: 66
Period size: 9 Copynumber: 6.7 Consensus size: 9
36599009 ATTATAAATT
36599019 TAAATTATG
1 TAAATTATG
*
36599028 TAAGTTATG
1 TAAATTATG
36599037 --AATTATG
1 TAAATTATG
*
36599044 TAAGTTATG
1 TAAATTATG
*
36599053 TAAATTACG
1 TAAATTATG
36599062 TAAATTATG
1 TAAATTATG
36599071 -AAATT
1 TAAATT
36599076 TGAACTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
7 6 0.15
8 5 0.12
9 29 0.73
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (9 bp):
TAAATTATG
Found at i:36600810 original size:44 final size:44
Alignment explanation
Indices: 36600747--36600837 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
36600737 TGGAAGGAGA
36600747 AAGGAGGCGATTTAGGGATTTGGGATTTCAAGAAATTCGACAAG
1 AAGGAGGCGATTTAGGGATTTGGGATTTCAAGAAATTCGACAAG
* * *
36600791 AAGGAGGCGATTTAGGGATTTGGTATTTCAAGAAATTGGGCAAG
1 AAGGAGGCGATTTAGGGATTTGGGATTTCAAGAAATTCGACAAG
36600835 AAG
1 AAG
36600838 ATTATTCAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.08, G:0.33, T:0.25
Consensus pattern (44 bp):
AAGGAGGCGATTTAGGGATTTGGGATTTCAAGAAATTCGACAAG
Found at i:36602072 original size:6 final size:7
Alignment explanation
Indices: 36602018--36602072 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
36602008 ACTAAAGCGG
36602018 CCTAAAC
1 CCTAAAC
*
36602025 CCCAAAC
1 CCTAAAC
*
36602032 CCTAAAT
1 CCTAAAC
*
36602039 CTTAAAC
1 CCTAAAC
36602046 ACC-AAAC
1 -CCTAAAC
36602053 TCCTAAAC
1 -CCTAAAC
36602061 CCTAAA-
1 CCTAAAC
36602067 CCTAAA
1 CCTAAA
36602073 ACACCATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
6 6 0.15
7 28 0.72
8 5 0.13
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.16
Consensus pattern (7 bp):
CCTAAAC
Found at i:36602105 original size:7 final size:7
Alignment explanation
Indices: 36602093--36602119 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36602083 AATTAACCCT
36602093 AAACTCA
1 AAACTCA
36602100 AAACTCA
1 AAACTCA
36602107 AAACTCA
1 AAACTCA
36602114 AAACTC
1 AAACTC
36602120 TAATATTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.30, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACTCA
Found at i:36602590 original size:115 final size:114
Alignment explanation
Indices: 36602371--36602749 Score: 299
Period size: 115 Copynumber: 3.3 Consensus size: 114
36602361 CCAAAACTGT
36602371 GCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCAAAAAGCGCCGCTAATAATATGCTTTAGCGGC
1 GCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCAAAAAGCGCCGCTAATAATATGCTTTAGCGGC
* * * * *
36602436 GATTTCTCGTGAACGCCACTAATTCCAGTATATATCAAGACTTAAACACA
66 GATTTCTCATGAACGCCACTAATTCCAATATACACCAAGAC-CAAACACA
* * * *
36602486 GCGTTTTGGTTAATATATTTTGCGGCGCTT-CTAAAAACGCGCCGCTAATAGTATGCTTTTGCGG
1 GCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCAAAAA-GCGCCGCTAATAATATGCTTTAGCGG
* * * * *
36602550 CG-TTTATCCAT-AAGCGCCACTAATTCTAATATACCCCAAGACCAAACTCT
65 CGATTTCT-CATGAA-CGCCACTAATTCCAATATACACCAAGACCAAACACA
* * ** ** * **
36602600 GCGTTTTGGTGT--GCATATCTTACGGCGCTTATCTCAAAGCGCCACTAAT--TATTATTTAGCG
1 GCGTTTTGGT-TAAG-ATATTTTGCGGCGCTTCCCAAAAAGCGCCGCTAATAATATGCTTTAGCG
* * ** * * * *
36602661 GCGTTTTCT-A-GTAAGCGCCACTAACTATAGTATACATCAAGACCAAAACGCT
64 GCGATTTCTCATG-AA-CGCCACTAATTCCAATATACACCAAGACC-AAACACA
* * *
36602713 GAGTTTTGGTTAAGAAATTTAGCGGCGCTTCTCCAAA
1 GCGTTTTGGTTAAGATATTTTGCGGCGCTTC-CCAAA
36602750 CGCCACTAAT
Statistics
Matches: 210, Mismatches: 41, Indels: 27
0.76 0.15 0.10
Matches are distributed among these distances:
111 1 0.00
112 40 0.19
113 31 0.15
114 54 0.26
115 84 0.40
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (114 bp):
GCGTTTTGGTTAAGATATTTTGCGGCGCTTCCCAAAAAGCGCCGCTAATAATATGCTTTAGCGGC
GATTTCTCATGAACGCCACTAATTCCAATATACACCAAGACCAAACACA
Found at i:36602816 original size:73 final size:74
Alignment explanation
Indices: 36602676--36602817 Score: 198
Period size: 73 Copynumber: 1.9 Consensus size: 74
36602666 TTCTAGTAAG
36602676 CGCCACTAACTATAGTATACATCAAGACCAAAACGCTGAGTTTTGGTTAAGAAATTTAGCGGCGC
1 CGCCACTAACTATAGTATACATCAAGACCAAAACGCTGAGTTTTGGTTAAGAAATTTAGCGGCGC
36602741 TTCTCCAAA
66 TTCTCCAAA
* * * * * * *
36602750 CGCCACTAATTCTAGTATAC-TACAAGA-CTAAACTCTGCGTTTTGGTTAAGATATTTTGCGGCG
1 CGCCACTAACTATAGTATACAT-CAAGACCAAAACGCTGAGTTTTGGTTAAGAAATTTAGCGGCG
36602813 CTTCT
65 CTTCT
36602818 AAACAAGCGT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
73 37 0.62
74 23 0.38
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (74 bp):
CGCCACTAACTATAGTATACATCAAGACCAAAACGCTGAGTTTTGGTTAAGAAATTTAGCGGCGC
TTCTCCAAA
Found at i:36604069 original size:13 final size:13
Alignment explanation
Indices: 36604051--36604075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36604041 GTGTGCTACT
36604051 GAAGAGAAAAAAG
1 GAAGAGAAAAAAG
36604064 GAAGAGAAAAAA
1 GAAGAGAAAAAA
36604076 ATGGGGGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (13 bp):
GAAGAGAAAAAAG
Found at i:36604798 original size:32 final size:31
Alignment explanation
Indices: 36604757--36604859 Score: 104
Period size: 32 Copynumber: 3.4 Consensus size: 31
36604747 AATGTTAGTG
36604757 TGAA-AAAAAATTAAAAACAAAATTTTAATGT
1 TGAATAAAAAA-TAAAAACAAAATTTTAATGT
** *** *
36604788 TGAATAAAAAA-ACGAA-GTTACTTTAATGT
1 TGAATAAAAAATAAAAACAAAATTTTAATGT
*
36604817 TGAATAAAAAAATAAAATCAAAATTTTAATGT
1 TGAAT-AAAAAATAAAAACAAAATTTTAATGT
36604849 TGAATAAAAAA
1 TGAATAAAAAA
36604860 AGGTAAATTA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
29 14 0.25
30 9 0.16
31 12 0.22
32 20 0.36
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (31 bp):
TGAATAAAAAATAAAAACAAAATTTTAATGT
Found at i:36604860 original size:32 final size:32
Alignment explanation
Indices: 36604760--36604860 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 32
36604750 GTTAGTGTGA
*
36604760 AAAAAAATTAAAAACAAAATTTTAATGTTGAAT
1 AAAAAAA-TAAAATCAAAATTTTAATGTTGAAT
** * * *
36604793 AAAAAAACGAAGT---TACTTTAATGTTGAAT
1 AAAAAAATAAAATCAAAATTTTAATGTTGAAT
36604822 AAAAAAATAAAATCAAAATTTTAATGTTGAAT
1 AAAAAAATAAAATCAAAATTTTAATGTTGAAT
36604854 AAAAAAA
1 AAAAAAA
36604861 GGTAAATTAC
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
29 24 0.44
32 23 0.43
33 7 0.13
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (32 bp):
AAAAAAATAAAATCAAAATTTTAATGTTGAAT
Found at i:36605144 original size:29 final size:30
Alignment explanation
Indices: 36605106--36605166 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
36605096 TCTTTTCTAT
36605106 TTTTTAATAAATGACCCAATAT-TTT-TAC
1 TTTTTAATAAATGACCCAATATGTTTATAC
*
36605134 TTTTTACATAAATGGCCCAATATGTTTATAC
1 TTTTTA-ATAAATGACCCAATATGTTTATAC
36605165 TT
1 TT
36605167 CTTCTCTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 6 0.21
29 15 0.52
30 3 0.10
31 5 0.17
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.46
Consensus pattern (30 bp):
TTTTTAATAAATGACCCAATATGTTTATAC
Found at i:36612875 original size:45 final size:45
Alignment explanation
Indices: 36612825--36612938 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 45
36612815 TGAGAAATAT
* *
36612825 CATAGTTGAAAGAGACTATGGCATTAAATATGA-TACGAATAAGAC
1 CATAGTTGAAAGAGACTATGGCATTAAAT-CGACAACGAATAAGAC
* * ** *
36612870 TATAGTTGAAAGATG-CTATGGCAATACGTCGACAATGAATAAGAC
1 CATAGTTGAAAGA-GACTATGGCATTAAATCGACAACGAATAAGAC
*
36612915 CATAGTTGAAAGATACTATGGCAT
1 CATAGTTGAAAGAGACTATGGCAT
36612939 CACTTCGGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
44 2 0.04
45 53 0.95
46 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (45 bp):
CATAGTTGAAAGAGACTATGGCATTAAATCGACAACGAATAAGAC
Found at i:36615341 original size:25 final size:25
Alignment explanation
Indices: 36615287--36615342 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
36615277 GGACTCACCA
* *
36615287 CAGCTCGTATGAGCTTACTGATTTG
1 CAGCTCGTAGGAGCTTACCGATTTG
*
36615312 TAGCTCGTAGGAGCTTACCGATATT-
1 CAGCTCGTAGGAGCTTACCGAT-TTG
36615337 CAGCTC
1 CAGCTC
36615343 AGAAGAGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (25 bp):
CAGCTCGTAGGAGCTTACCGATTTG
Found at i:36616080 original size:40 final size:40
Alignment explanation
Indices: 36616021--36616105 Score: 161
Period size: 40 Copynumber: 2.1 Consensus size: 40
36616011 TGTGAATGTC
*
36616021 TTTATTTTGAATCGGTATTTTGGGTATCAAATGGTTGAGA
1 TTTATTTTGAATCGATATTTTGGGTATCAAATGGTTGAGA
36616061 TTTATTTTGAATCGATATTTTGGGTATCAAATGGTTGAGA
1 TTTATTTTGAATCGATATTTTGGGTATCAAATGGTTGAGA
36616101 TTTAT
1 TTTAT
36616106 AAGTGGCATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.26, C:0.05, G:0.22, T:0.47
Consensus pattern (40 bp):
TTTATTTTGAATCGATATTTTGGGTATCAAATGGTTGAGA
Found at i:36619507 original size:20 final size:20
Alignment explanation
Indices: 36619479--36619535 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
36619469 AATATTTTGA
* *
36619479 ACCACTCCATTTACTTTCTC
1 ACCATTCCATTTACTTACTC
*
36619499 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTC
* *
36619519 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
36619536 GCATAAATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.32, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTC
Found at i:36623911 original size:21 final size:21
Alignment explanation
Indices: 36623886--36623925 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
36623876 TATAATTACT
36623886 TCATG-CCAAAACATATATATA
1 TCATGACCAAAA-ATATATATA
36623907 TCATGACCAAAAATATATA
1 TCATGACCAAAAATATATA
36623926 ACTCAAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.28
Consensus pattern (21 bp):
TCATGACCAAAAATATATATA
Found at i:36625511 original size:11 final size:11
Alignment explanation
Indices: 36625497--36625524 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
36625487 ATAAGCATAG
36625497 AAAATAATATT
1 AAAATAATATT
36625508 AAAATAATATT
1 AAAATAATATT
36625519 AAAATA
1 AAAATA
36625525 TTTTTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATAATATT
Found at i:36634155 original size:17 final size:18
Alignment explanation
Indices: 36634122--36634155 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36634112 ATTTAAATTG
36634122 CGGTCGCAGTCGCGTTTT
1 CGGTCGCAGTCGCGTTTT
*
36634140 CGGTCGC-GTCGGGTTT
1 CGGTCGCAGTCGCGTTT
36634156 GTCGCGGTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.03, C:0.26, G:0.38, T:0.32
Consensus pattern (18 bp):
CGGTCGCAGTCGCGTTTT
Found at i:36635978 original size:14 final size:14
Alignment explanation
Indices: 36635940--36635982 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
36635930 CAAAATGTAC
36635940 AATATAATTAAA-T
1 AATATAATTAAATT
36635953 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
36635968 AA-ATAATTTAATT
1 AATATAATTAAATT
36635981 AA
1 AA
36635983 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:36638466 original size:3 final size:3
Alignment explanation
Indices: 36638451--36638549 Score: 108
Period size: 3 Copynumber: 33.0 Consensus size: 3
36638441 TAAAACAATT
* * * **
36638451 TAA TAA TAG TAA TAA TAA TAA TAA TGA TAT TAA TAA TAA TAA TAA TGG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* ** * *
36638499 TAA TAA TAA TAA TAA TAA TGA TGG TAT TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36638547 TAA
1 TAA
36638550 AAATCTTAAA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36645826 original size:26 final size:26
Alignment explanation
Indices: 36645797--36645852 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
36645787 AACACTCAAA
36645797 TTTTAAACTA-AACTTTTCAAAAACAC
1 TTTTAAAC-AGAACTTTTCAAAAACAC
** * *
36645823 TTTTTCACAGCACTTTTCAAAAGCAC
1 TTTTAAACAGAACTTTTCAAAAACAC
36645849 TTTT
1 TTTT
36645853 TAAAAGCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.39
Consensus pattern (26 bp):
TTTTAAACAGAACTTTTCAAAAACAC
Found at i:36645841 original size:12 final size:13
Alignment explanation
Indices: 36645808--36645860 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
36645798 TTTAAACTAA
*
36645808 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
*
36645821 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
36645834 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
36645847 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
36645860 A
1 A
36645861 TTGCCAACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 5 0.15
13 24 0.71
14 5 0.15
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:36645860 original size:26 final size:26
Alignment explanation
Indices: 36645808--36645860 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36645798 TTTAAACTAA
* *
36645808 ACTTTTCAAAAACACTTTTTCACAGC
1 ACTTTTCAAAAACACTTTTTAAAAGC
*
36645834 ACTTTTCAAAAGCACTTTTTAAAAGC
1 ACTTTTCAAAAACACTTTTTAAAAGC
36645860 A
1 A
36645861 TTGCCAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
ACTTTTCAAAAACACTTTTTAAAAGC
Found at i:36652401 original size:29 final size:29
Alignment explanation
Indices: 36652358--36652415 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
36652348 AGCCACGTAT
* * *
36652358 TGTATGTAGTGAGTTGTTGGAAGGAGATA
1 TGTATGTAGTAAGTTGCTGAAAGGAGATA
36652387 TGTATGTAGTAAGTTGCTGAAAGGAGATA
1 TGTATGTAGTAAGTTGCTGAAAGGAGATA
36652416 GAGTGAAGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.31, C:0.02, G:0.34, T:0.33
Consensus pattern (29 bp):
TGTATGTAGTAAGTTGCTGAAAGGAGATA
Found at i:36652726 original size:11 final size:11
Alignment explanation
Indices: 36652712--36652772 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
36652702 CAAGAGAAAA
*
36652712 AGAAGAATAAG
1 AGAAGAAGAAG
*
36652723 AGAAGAAATGGAG
1 AGAAG-AA-GAAG
* *
36652736 AAAAGAAGAAA
1 AGAAGAAGAAG
*
36652747 AGAAGAAGATG
1 AGAAGAAGAAG
*
36652758 AGAAGAAAAAG
1 AGAAGAAGAAG
36652769 AGAA
1 AGAA
36652773 AATGGAAGGA
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
11 28 0.74
12 4 0.11
13 6 0.16
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.05
Consensus pattern (11 bp):
AGAAGAAGAAG
Found at i:36655140 original size:14 final size:15
Alignment explanation
Indices: 36655115--36655149 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
36655105 TAAGTAATGT
36655115 TTAATATTATTAATA
1 TTAATATTATTAATA
*
36655130 TTAAT-TTATTAATG
1 TTAATATTATTAATA
36655144 TTAATA
1 TTAATA
36655150 CAAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TTAATATTATTAATA
Found at i:36663364 original size:67 final size:67
Alignment explanation
Indices: 36663255--36663381 Score: 202
Period size: 67 Copynumber: 1.9 Consensus size: 67
36663245 TTTTCAATTC
* * *
36663255 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCTAGGCTAAATCTCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTCCTTACAGCGAGATTACCAGTCCAGGCTAAATCTCCTG
36663320 CA
66 CA
*
36663322 AGAGAGCACACTCTCGCGAACC-CTATTCCTTACAGCGAGATTACCAGTCCAGGCTAAATC
1 AGAGAGCACACTCCCGCGAACCTC-ATTCCTTACAGCGAGATTACCAGTCCAGGCTAAATC
36663382 CCCTATAATA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
66 1 0.02
67 54 0.98
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.21
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTCCTTACAGCGAGATTACCAGTCCAGGCTAAATCTCCTG
CA
Found at i:36663601 original size:57 final size:60
Alignment explanation
Indices: 36663533--36663655 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 60
36663523 GCTAAATTCA
*
36663533 TTTTCCACATATTCTT-AGGGAGGGCTATATC-A-A-GATCACCCGTCCGGGCTAGAT-CT
1 TTTTCCACATATTCTTCA-AGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATCCT
36663589 TTTTCACACATATTCTTCAAGAGGGCTATATCAGGATAGGATCACCCGTCCGGGCTAGATCCT
1 TTTTC-CACATATTCTTCAAGAGGGCTATATC--GATAGGATCACCCGTCCGGGCTAGATCCT
36663652 TTTT
1 TTTT
36663656 ACCGTCAATT
Statistics
Matches: 58, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
56 5 0.09
57 23 0.40
58 1 0.02
60 1 0.02
61 1 0.02
62 21 0.36
63 6 0.10
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (60 bp):
TTTTCCACATATTCTTCAAGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATCCT
Found at i:36665719 original size:18 final size:18
Alignment explanation
Indices: 36665696--36665734 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
36665686 TGAAATCCAT
36665696 CATGATATTAATTGAAAA
1 CATGATATTAATTGAAAA
36665714 CATGATATTAATTGAAAA
1 CATGATATTAATTGAAAA
36665732 CAT
1 CAT
36665735 AATCAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (18 bp):
CATGATATTAATTGAAAA
Found at i:36665818 original size:36 final size:36
Alignment explanation
Indices: 36665771--36665844 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
36665761 AGTAAACTCT
*
36665771 ATTCAGTTTAGCAACCTTTT-GGATCTATTCTGACTG
1 ATTCAGTTTAGCAACCTTTTAAG-TCTATTCTGACTG
* *
36665807 ATTCAGTTTAGCAGCCTTTTAAGTCTATTCTGATTG
1 ATTCAGTTTAGCAACCTTTTAAGTCTATTCTGACTG
36665843 AT
1 AT
36665845 GTGCTCCTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (36 bp):
ATTCAGTTTAGCAACCTTTTAAGTCTATTCTGACTG
Found at i:36668628 original size:54 final size:53
Alignment explanation
Indices: 36668570--36668752 Score: 226
Period size: 54 Copynumber: 3.5 Consensus size: 53
36668560 TTTCATCTCC
**
36668570 TAGGGGTATAACAGTCATTTTACCCTATGGGGATATTTTGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTATGGGG-TATTTTGGTCATTTTACCCTA
* * * * *
36668624 TAGGGGTATTTCAGTCATTCTACCTTATGAGGGTATTTTAGTTATTTTACCTTA
1 TAGGGGTATTTCAGTCATTTTACCCTATG-GGGTATTTTGGTCATTTTACCCTA
* * * *
36668678 TAGGGGTATTTCGGTTATTTTACCCTATAGGGTATTTCGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTA
*
36668731 T--GGGTATTTGAGTCATTTTACC
1 TAGGGGTATTTCAGTCATTTTACC
36668753 TATTTGGGGT
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
51 18 0.17
53 21 0.19
54 67 0.61
55 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.43
Consensus pattern (53 bp):
TAGGGGTATTTCAGTCATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTA
Found at i:36668717 original size:26 final size:26
Alignment explanation
Indices: 36668583--36668752 Score: 191
Period size: 27 Copynumber: 6.4 Consensus size: 26
36668573 GGGTATAACA
* *
36668583 GTCATTTTACCCTATGGGGATATTTTG
1 GTCATTTTACCCTATAGGG-TATTTCG
*
36668610 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATA-GGGTATTTCG
* * **
36668637 GTCATTCTACCTTATGAGGGTATTTTA
1 GTCATTTTACCCTAT-AGGGTATTTCG
* *
36668664 GTTATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTATA-GGGTATTTCG
*
36668691 GTTATTTTACCCTATAGGGTATTTCG
1 GTCATTTTACCCTATAGGGTATTTCG
36668717 GTCATTTTACCCTAT-GGGTATTT-G
1 GTCATTTTACCCTATAGGGTATTTCG
36668741 AGTCATTTTACC
1 -GTCATTTTACC
36668753 TATTTGGGGT
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
24 1 0.01
25 19 0.15
26 25 0.20
27 78 0.61
28 4 0.03
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.45
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGTATTTCG
Found at i:36669845 original size:24 final size:25
Alignment explanation
Indices: 36669797--36669846 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
36669787 CCTCCCCAAA
* *
36669797 TCCAAATATTCTCTCTTCAAATCTC
1 TCCAAATATTCCCTCCTCAAATCTC
*
36669822 TCCAAATA-TCCCTCCTCAATTCTC
1 TCCAAATATTCCCTCCTCAAATCTC
36669846 T
1 T
36669847 TTAAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (25 bp):
TCCAAATATTCCCTCCTCAAATCTC
Found at i:36682842 original size:26 final size:26
Alignment explanation
Indices: 36682783--36682843 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
36682773 TCCTCATGAT
*
36682783 CTTCCACATAAGATAGTCTTGATGGA
1 CTTCCACATAAGATAGTCTTAATGGA
* * * *
36682809 TTTTCACATAAGATAGTTTTAATGGG
1 CTTCCACATAAGATAGTCTTAATGGA
36682835 CTTCCACAT
1 CTTCCACAT
36682844 TTATGGTAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (26 bp):
CTTCCACATAAGATAGTCTTAATGGA
Found at i:36688420 original size:24 final size:24
Alignment explanation
Indices: 36688373--36688420 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
36688363 GATGAATTAT
* *
36688373 AATTTAAAGTATATTGGTTGAATA
1 AATTTAAAGTATAATGATTGAATA
36688397 AATTTAAAGTATGAATGATT-AATA
1 AATTTAAAGTAT-AATGATTGAATA
36688421 TACTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (24 bp):
AATTTAAAGTATAATGATTGAATA
Found at i:36703663 original size:20 final size:20
Alignment explanation
Indices: 36703638--36703676 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36703628 ACTAGGAAAA
36703638 ACCTTAATCATCATGTCTCT
1 ACCTTAATCATCATGTCTCT
36703658 ACCTTAATCATCATGTCTC
1 ACCTTAATCATCATGTCTC
36703677 CGACTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.31, G:0.05, T:0.38
Consensus pattern (20 bp):
ACCTTAATCATCATGTCTCT
Found at i:36706801 original size:14 final size:13
Alignment explanation
Indices: 36706756--36706808 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
36706746 TCATAATGAC
36706756 TAATTGATTTAATT
1 TAATT-ATTTAATT
36706770 TAATT-TTTGAAATT
1 TAATTATTT--AATT
36706784 TAATTATTTAATT
1 TAATTATTTAATT
*
36706797 ATAATTAATTAA
1 -TAATTATTTAA
36706809 ATAATAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
12 3 0.09
13 4 0.12
14 24 0.71
15 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (13 bp):
TAATTATTTAATT
Found at i:36708139 original size:32 final size:32
Alignment explanation
Indices: 36708054--36708256 Score: 239
Period size: 32 Copynumber: 6.4 Consensus size: 32
36708044 GAATGATTAC
* * **
36708054 AAGCCATAAGT-ACAGTAATATGATTAGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
* * * *
36708085 AAGCCATCAGTAGCAGTGATATGACCGGCA-A
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
*
36708116 ACAGCCATCAGTAACGGTAATATGATTGGCACA
1 A-AGCCATCAGTAACGGTAATATGATCGGCACA
*** *
36708149 AAATGATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
**
36708181 AAGCCATCAGTAACGGTAATATGATCAACACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
*
36708213 AAGCCATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
36708245 AAGCCATCAGTA
1 AAGCCATCAGTA
36708257 GCATCGCAGT
Statistics
Matches: 144, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
31 12 0.08
32 130 0.90
33 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGGCACA
Found at i:36708171 original size:64 final size:64
Alignment explanation
Indices: 36708054--36708256 Score: 268
Period size: 64 Copynumber: 3.2 Consensus size: 64
36708044 GAATGATTAC
* * * * *
36708054 AAGCCATAAGT-ACAGTAATATGATTAGCACAAAGCCATCAGTAGC-AGTGATATGACCGGCA-A
1 AAGCCATCAGTAACGGTAATATGATTAGCACAAAGCCATCAGTAACGA-TAATATGATCGGCACA
* ***
36708116 ACAGCCATCAGTAACGGTAATATGATTGGCACAAAATGATCAGTAACGATAATATGATCGGCACA
1 A-AGCCATCAGTAACGGTAATATGATTAGCACAAAGCCATCAGTAACGATAATATGATCGGCACA
* *
36708181 AAGCCATCAGTAACGGTAATATGATCAACACAAAGCCATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATTAGCACAAAGCCATCAGTAACGATAATATGATCGGCACA
36708245 AAGCCATCAGTA
1 AAGCCATCAGTA
36708257 GCATCGCAGT
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
62 1 0.01
63 9 0.07
64 109 0.89
65 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (64 bp):
AAGCCATCAGTAACGGTAATATGATTAGCACAAAGCCATCAGTAACGATAATATGATCGGCACA
Found at i:36708586 original size:27 final size:27
Alignment explanation
Indices: 36708519--36708801 Score: 222
Period size: 27 Copynumber: 10.6 Consensus size: 27
36708509 ATGACCTCGA
*
36708519 GGGTATTACGGTCATTTTATCCTTCA-
1 GGGTATTACGGTCATTTTATCCTACAG
* * *
36708545 GGGCATTATGGTCATTTTATCCTATAG
1 GGGTATTACGGTCATTTTATCCTACAG
* * *
36708572 GGGCATTACGATCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTATCCTACAG
* *
36708599 GGGCA-T--GGTCATTTTA-CCTTATAG
1 GGGTATTACGGTCATTTTATCC-TACAG
* * * *
36708623 GGTTATTACGGTAATTTTACCCTACAT
1 GGGTATTACGGTCATTTTATCCTACAG
** * *
36708650 GGGTATTACAATCATTTTTTCTTACAG
1 GGGTATTACGGTCATTTTATCCTACAG
*
36708677 GGGTATTAC-ATCATTTT-TCCCTACAGG
1 GGGTATTACGGTCATTTTAT-CCTACA-G
* * *
36708704 GGGTAATACAGTCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTATCCTACAG
* * * *
36708731 GGGCATTACGGTCATTGTAACCTATAG
1 GGGTATTACGGTCATTTTATCCTACAG
*
36708758 GGATATTACGGTCATTTTA-CCATACAG
1 GGGTATTACGGTCATTTTATCC-TACAG
* *
36708785 GGGTATTATGATCATTT
1 GGGTATTACGGTCATTT
36708802 AACAACTTTT
Statistics
Matches: 206, Mismatches: 40, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
23 2 0.01
24 16 0.08
25 2 0.01
26 38 0.18
27 133 0.65
28 15 0.07
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTACGGTCATTTTATCCTACAG
Found at i:36719909 original size:20 final size:22
Alignment explanation
Indices: 36719884--36719925 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36719874 AAAAAAGGGA
36719884 CCATA-TCTCGAGA-CCTTGAC
1 CCATAGTCTCGAGACCCTTGAC
36719904 CCATATGTCTCGAGACCCTTGA
1 CCATA-GTCTCGAGACCCTTGA
36719926 TTGAATTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (22 bp):
CCATAGTCTCGAGACCCTTGAC
Found at i:36728195 original size:40 final size:39
Alignment explanation
Indices: 36728107--36728328 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
36728097 TTCTCGTTCA
* * * *
36728107 AATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36728145 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36728184 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
36728224 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
36728264 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
36728305 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36728329 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 9 0.06
39 29 0.19
40 106 0.68
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:36728337 original size:41 final size:41
Alignment explanation
Indices: 36728260--36728337 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36728250 TTTGTATCTC
* * *
36728260 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36728301 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36728338 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36736139 original size:40 final size:40
Alignment explanation
Indices: 36736039--36736210 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
36736029 GCTCCTCGTT
* * *
36736039 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36736079 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36736118 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36736158 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
36736198 CAAATGCCTTCGG
1 CAAATGCCTTCGG
36736211 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36761027 original size:21 final size:19
Alignment explanation
Indices: 36760990--36761029 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
36760980 TAAAAAACCT
*
36760990 AAAAACTTAAGTACAAAAG
1 AAAAACTTAAATACAAAAG
36761009 AAAAACTTAGAATATCAAAAG
1 AAAAACTTA-AATA-CAAAAG
36761030 TTGTCCTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.17
Consensus pattern (19 bp):
AAAAACTTAAATACAAAAG
Found at i:36772163 original size:6 final size:6
Alignment explanation
Indices: 36772129--36772159 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
36772119 CAGTACAAGT
*
36772129 ATAAGA ATAAGA ATAAGA ATAAGA ACAAGA A
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA A
36772160 CAAGTACATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.68, C:0.03, G:0.16, T:0.13
Consensus pattern (6 bp):
ATAAGA
Found at i:36773620 original size:28 final size:28
Alignment explanation
Indices: 36773583--36773738 Score: 215
Period size: 28 Copynumber: 5.6 Consensus size: 28
36773573 TTGACAGTAT
36773583 AGTGTGGGCCTTAGCCCAATACAGTAA-C
1 AGTGTGGGCCTTAGCCCAATACAG-AATC
* *
36773611 AGTGTAGGCCTTAGCCCAATACAAAATC
1 AGTGTGGGCCTTAGCCCAATACAGAATC
36773639 AGTGTGGGCCTTAGCCCAATACAGAATC
1 AGTGTGGGCCTTAGCCCAATACAGAATC
* *
36773667 AGTGTGGGCCTTAGCCCCATATAGAATC
1 AGTGTGGGCCTTAGCCCAATACAGAATC
* * *
36773695 AATGTGGGCCTTAGCCCAATACAAAATG
1 AGTGTGGGCCTTAGCCCAATACAGAATC
* *
36773723 AGTATAGGCCTTAGCC
1 AGTGTGGGCCTTAGCC
36773739 TAATGCAGTA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
27 2 0.02
28 111 0.98
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGAATC
Found at i:36773934 original size:26 final size:26
Alignment explanation
Indices: 36773856--36773936 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
36773846 AACACACCAA
*
36773856 TATCGCAGCAAAGCTGCTAGTAATAG
1 TATCGCAGCAAAGCTGCTAGTAACAG
* * * * *
36773882 CATCACAGCAAAGCTGCCAATATCAG
1 TATCGCAGCAAAGCTGCTAGTAACAG
*
36773908 TATCGCAGCAAAGCTGTTAGTAACAG
1 TATCGCAGCAAAGCTGCTAGTAACAG
36773934 TAT
1 TAT
36773937 ATGTGGCAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCTAGTAACAG
Found at i:36774218 original size:54 final size:53
Alignment explanation
Indices: 36774144--36774273 Score: 120
Period size: 54 Copynumber: 2.4 Consensus size: 53
36774134 ACCATAACAG
*
36774144 TCATTTTATCTCTTAT-GGGTATAACAGTCATTAAACCCTATGGGGGTATTTC-A
1 TCATTTTA-CT-TTATAGGGTATAACAGTCATTAAACCCTATAGGGGTATTTCGA
** * ** *
36774197 CTCATTTTACTTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGA
1 -TCATTTTACTTTATA-GGGTATAACAGTCATTAAACCCTATAGGGGTATTTCGA
* *
36774252 TCATTTTCCCTTATAAGGGTAT
1 TCATTTTACTTTAT-AGGGTAT
36774274 TTTAGTAATT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
52 4 0.06
53 2 0.03
54 55 0.87
55 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (53 bp):
TCATTTTACTTTATAGGGTATAACAGTCATTAAACCCTATAGGGGTATTTCGA
Found at i:36774427 original size:27 final size:27
Alignment explanation
Indices: 36774169--36774420 Score: 238
Period size: 27 Copynumber: 9.3 Consensus size: 27
36774159 TGGGTATAAC
** *
36774169 AGTCATTAAACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTT
* ** * *
36774196 ACTCATTTTACTTTATAGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTT
* * *
36774223 GGTCATTTTACCTTATAGGGGTA-TTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* **
36774249 CGATCATTTT-CCCTTATAAGGGTATTTT
1 AG-TCATTTTACCC-TATGGGGGTATTTT
* * * *
36774277 AGTAATTTTACCCTACGAGGGAATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
*
36774304 GGTCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* * *
36774331 GGCCATTTTATCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* *
36774358 AGTCATCTTACCCTATGAGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* *
36774385 AGTAATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTT
36774412 AGTCATTTT
1 AGTCATTTT
36774421 CATCTATTAG
Statistics
Matches: 186, Mismatches: 35, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
26 5 0.03
27 174 0.94
28 7 0.04
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTT
Found at i:36774477 original size:82 final size:80
Alignment explanation
Indices: 36774299--36774478 Score: 184
Period size: 81 Copynumber: 2.2 Consensus size: 80
36774289 CTACGAGGGA
* ** * ***
36774299 ATTTTGGTCATTTTACCCTATGGGGGTATTTTGGCCATTTTATCCTATGGGGGTATTTTAGTCAT
1 ATTTTGGTAATTTTACCCTATGGGGGTATTTCAGCCATTTTATCCTATAGGGGTAAAATAGTCAT
*
36774364 CTTACCCTATGAGGGT
66 CTTA-CCTATGAAGGT
* *
36774380 ATTTTAGTAATTTTACCCTATGGGGGTATTTCAGTCATTTTCAT-CTATTAGGGGTAAAATAGTC
1 ATTTTGGTAATTTTACCCTATGGGGGTATTTCAGCCATTTT-ATCCTA-TAGGGGTAAAATAGTC
* *
36774444 ATTTTA-CTATTTACAGGT
64 ATCTTACCTA-TGA-AGGT
*
36774462 ATTTTGGTTATTTTACC
1 ATTTTGGTAATTTTACC
36774479 TATTTTTGGG
Statistics
Matches: 81, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
80 3 0.04
81 41 0.51
82 37 0.46
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (80 bp):
ATTTTGGTAATTTTACCCTATGGGGGTATTTCAGCCATTTTATCCTATAGGGGTAAAATAGTCAT
CTTACCTATGAAGGT
Found at i:36775838 original size:27 final size:27
Alignment explanation
Indices: 36775808--36775938 Score: 95
Period size: 27 Copynumber: 4.8 Consensus size: 27
36775798 TTTCAGTTTT
*
36775808 GGGGTATTTTAGTCATTTTACTCTATA
1 GGGGTATTTTAGTCATTTTACCCTATA
* * * *
36775835 GGGGTATTTCAGTAATTTTACCCTTTT
1 GGGGTATTTTAGTCATTTTACCCTATA
* * *
36775862 GGGGTATTTCAATCATTTT-CATCTATTA
1 GGGGTATTTTAGTCATTTTAC-CCTA-TA
* ***
36775890 GAGGTAAAATAGTCATTTTACCCT-TCA
1 GGGGTATTTTAGTCATTTTACCCTAT-A
* *
36775917 GGGGTATTTTGGTTATTTTACC
1 GGGGTATTTTAGTCATTTTACC
36775939 TATTTTAGGG
Statistics
Matches: 77, Mismatches: 23, Indels: 8
0.71 0.21 0.07
Matches are distributed among these distances:
26 2 0.03
27 58 0.75
28 16 0.21
29 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (27 bp):
GGGGTATTTTAGTCATTTTACCCTATA
Found at i:36778600 original size:33 final size:34
Alignment explanation
Indices: 36778530--36778600 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
36778520 AAACAGCATG
* ** *
36778530 CAGTAACAGTCTGGGCCTTAGCCCTATTCAGTGA
1 CAGTAACAGTCTGGGCCTTAGCCCAACACAGTAA
*
36778564 CAGT-ACAGTGTGGGCCTTAGCCCAACACAGTAA
1 CAGTAACAGTCTGGGCCTTAGCCCAACACAGTAA
36778597 CAGT
1 CAGT
36778601 GTGGGCCTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCTTAGCCCAACACAGTAA
Found at i:36778602 original size:28 final size:28
Alignment explanation
Indices: 36778569--36778714 Score: 181
Period size: 28 Copynumber: 5.2 Consensus size: 28
36778559 AGTGACAGTA
*
36778569 CAGTGTGGGCCTTAGCCCAACACAGTAA-
1 CAGTGTGGGCCTTAGCCCAATACA-TAAT
*
36778597 CAGTGTGGGCCTTAGCCCAATATATAAT
1 CAGTGTGGGCCTTAGCCCAATACATAAT
*
36778625 CAGTGT-GGCCTTTAGCCCAATACAAAAT
1 CAGTGTGGGCC-TTAGCCCAATACATAAT
* * *
36778653 CAGTATAGGCCTTAGCCCAATACAAAAT
1 CAGTGTGGGCCTTAGCCCAATACATAAT
*
36778681 CAGTGTGGACCTTAGCCCAATACAGTAAT
1 CAGTGTGGGCCTTAGCCCAATACA-TAAT
36778710 -AGTGT
1 CAGTGT
36778715 AGTGGAATAA
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.07
28 91 0.87
29 7 0.07
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACATAAT
Found at i:36778862 original size:26 final size:26
Alignment explanation
Indices: 36778783--36778863 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
36778773 AACACGCCAA
36778783 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* * * *
36778809 CATCGCAGTAGAGCCGCCAGT-ATCAG
1 TATCGCAGCAAAGCTGCCAGTAAT-AG
36778835 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
36778861 TAT
1 TAT
36778864 ATGTGGCAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.04
26 41 0.91
27 2 0.04
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:36779122 original size:27 final size:27
Alignment explanation
Indices: 36779091--36779369 Score: 206
Period size: 27 Copynumber: 10.3 Consensus size: 27
36779081 TGGGTATAAC
36779091 AGTCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* ** *
36779118 TGTCATTTTACTTTATAGGGGTA-TTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* * * **
36779144 CGATTATTTTACCTTATGGGGAAATTTT
1 AG-TCATTTTACCCTATGGGGGTATTTT
*
36779172 GGTCATTTT-CCCTTATGGGGGTA-TTT
1 AGTCATTTTACCC-TATGGGGGTATTTT
* * *
36779198 CGATCATTTTACCCTATAGGGGTACTTT
1 AG-TCATTTTACCCTATGGGGGTATTTT
* *
36779226 GGTCATTTTACCCTATGAGGGTA-TTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* * ** *
36779252 CGACCATTTTACCCTATGACGGTATTTC
1 AG-TCATTTTACCCTATGGGGGTATTTT
* * * **
36779280 AGTTATTTTACACTTTTAGGGTATTTT
1 AGTCATTTTACCCTATGGGGGTATTTT
* * *
36779307 AGTCATTTTACTCTATAGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTT
* * * *
36779334 AGTAATTTTACCTTATGGGGTTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTT
36779361 AGTCATTTT
1 AGTCATTTT
36779370 CATCTATTAG
Statistics
Matches: 200, Mismatches: 44, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
26 14 0.07
27 172 0.86
28 14 0.07
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTT
Found at i:36779153 original size:54 final size:53
Alignment explanation
Indices: 36779093--36779369 Score: 261
Period size: 54 Copynumber: 5.1 Consensus size: 53
36779083 GGTATAACAG
* *
36779093 TCATTTTACCCTATGGGGGTATTTTTGTCATTTTACTTTATAGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCTTAT-GGGGTATTTCGA
* * ** * *
36779147 TTATTTTACCTTATGGGGAAATTTTGGTCATTTTCCCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCTTAT-GGGGTATTTCGA
* * * *
36779201 TCATTTTACCCTATAGGGGTACTTTGGTCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCTTATG-GGGTATTTCGA
* ** * * * * *
36779255 CCATTTTACCCTATGACGGTATTTCAGTTATTTTACACTTTTAGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTTAGTCATTTTAC-CTTATGGGGTATTTCGA
* * * *
36779308 GTCATTTTACTCTATAGGGGTATTTCAGTAATTTTACCTTATGGGGTTATTTC-A
1 -TCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCTTATGGGG-TATTTCGA
36779362 GTCATTTT
1 -TCATTTT
36779370 CATCTATTAG
Statistics
Matches: 182, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
53 9 0.05
54 170 0.93
55 3 0.02
ACGTcount: A:0.20, C:0.15, G:0.19, T:0.46
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCTTATGGGGTATTTCGA
Found at i:36782083 original size:28 final size:28
Alignment explanation
Indices: 36782042--36782188 Score: 174
Period size: 28 Copynumber: 5.3 Consensus size: 28
36782032 CTATTCAGGA
*
36782042 ACAGT-ACAGTGTGGTCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* *
36782069 ATAGTAACAGTGTGGGCCTTAGCTCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
36782097 ACAGTAATAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
36782125 ACAG-AATCAGTGTGGGCCTTAGCGCAAT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
* * * *
36782153 ACA-AAATCTGTGTGGGCCGTAGCCTAAT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
36782181 ACAGTAAC
1 ACAGTAAC
36782189 CGTGCAGTGC
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
27 6 0.06
28 95 0.92
29 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:36782323 original size:28 final size:28
Alignment explanation
Indices: 36782274--36782411 Score: 163
Period size: 28 Copynumber: 4.9 Consensus size: 28
36782264 CAGTGACAGT
* * *
36782274 ACAGTGTGGTCCTTCGCCCAATATAGAA
1 ACAGTGTGGGCCTTAGCCCAATACAGAA
* * *
36782302 ACAGTGTGGGCTTTAGCTCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGAA
36782330 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAGCCCAATACAGAA
*
36782358 TCAGTGTGGGCCTTAGCCCAATACCA-AA
1 ACAGTGTGGGCCTTAGCCCAATA-CAGAA
* *
36782386 TCTA-TGTGGGCCATAGCCCAATACAG
1 AC-AGTGTGGGCCTTAGCCCAATACAG
36782412 TAACCGTGCA
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.02
28 91 0.95
29 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGAA
Found at i:36782411 original size:227 final size:227
Alignment explanation
Indices: 36782000--36782459 Score: 780
Period size: 227 Copynumber: 2.0 Consensus size: 227
36781990 TCATTCAGTA
*
36782000 AACA-ACATGCAACAACAGTCTGGGCCTTAGCCCTATTCAGGAACAGTACAGTGTGGTCCTTAGC
1 AACACACATGCAACAACAGTCTAGGCCTTAGCCCTATTCAGGAACAGTACAGTGTGGTCCTTAGC
* *
36782064 CCAATATAGTAACAGTGTGGGCCTTAGCTCAATACAGTAATAGTGTGGGCCTTAGCCCAATACAG
66 CCAATATAGAAACAGTGTGGGCCTTAGCTCAATACAGTAACAGTGTGGGCCTTAGCCCAATACAG
* * * *
36782129 AATCAGTGTGGGCCTTAGCGCAATACAAAATCTGTGTGGGCCGTAGCCTAATACAGTAACCGTGC
131 AATCAGTGTGGGCCTTAGCCCAATACAAAATCTATGTGGGCCATAGCCCAATACAGTAACCGTGC
36782194 AGTGCAATAATGTAACCCATCCCAATCCAACC
196 AGTGCAATAATGTAACCCATCCCAATCCAACC
* * *
36782226 AACACACATGCAGCAATAGTCTAGGCCTTAGCCCTATTCAGTG-ACAGTACAGTGTGGTCCTTCG
1 AACACACATGCAACAACAGTCTAGGCCTTAGCCCTATTCAG-GAACAGTACAGTGTGGTCCTTAG
*
36782290 CCCAATATAGAAACAGTGTGGGCTTTAGCTCAATACAGTAACAGTGTGGGCCTTAGCCCAATACA
65 CCCAATATAGAAACAGTGTGGGCCTTAGCTCAATACAGTAACAGTGTGGGCCTTAGCCCAATACA
*
36782355 GAATCAGTGTGGGCCTTAGCCCAATACCAAATCTATGTGGGCCATAGCCCAATACAGTAACCGTG
130 GAATCAGTGTGGGCCTTAGCCCAATACAAAATCTATGTGGGCCATAGCCCAATACAGTAACCGTG
*
36782420 CAGTGCAATAATGTAACCCATCCCAATCCAGCC
195 CAGTGCAATAATGTAACCCATCCCAATCCAACC
36782453 AACACAC
1 AACACAC
36782460 CAATATCGCA
Statistics
Matches: 219, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
226 4 0.02
227 214 0.98
228 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (227 bp):
AACACACATGCAACAACAGTCTAGGCCTTAGCCCTATTCAGGAACAGTACAGTGTGGTCCTTAGC
CCAATATAGAAACAGTGTGGGCCTTAGCTCAATACAGTAACAGTGTGGGCCTTAGCCCAATACAG
AATCAGTGTGGGCCTTAGCCCAATACAAAATCTATGTGGGCCATAGCCCAATACAGTAACCGTGC
AGTGCAATAATGTAACCCATCCCAATCCAACC
Found at i:36782555 original size:27 final size:26
Alignment explanation
Indices: 36782471--36782563 Score: 91
Period size: 26 Copynumber: 3.5 Consensus size: 26
36782461 AATATCGCAA
* * *
36782471 CAAAGCTACCAGTAATAG-AATCGCAG
1 CAAAGCTGCCAGTAACAGTAAT-GTAG
* *
36782497 CAGAGCTGCCAGTATCAGTAATGTAG
1 CAAAGCTGCCAGTAACAGTAATGTAG
*
36782523 CAAAGCTGCCAGTAACAGTATATGTGG
1 CAAAGCTGCCAGTAACAGTA-ATGTAG
36782550 CAAAGC-GACCAGTA
1 CAAAGCTG-CCAGTA
36782564 GGTCCACAGT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 36 0.64
27 20 0.36
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTAATGTAG
Found at i:36782775 original size:27 final size:27
Alignment explanation
Indices: 36782742--36782820 Score: 144
Period size: 27 Copynumber: 3.0 Consensus size: 27
36782732 AACATAAGGC
36782742 TATAACAGTCATTTTATCTCTTATAGG
1 TATAACAGTCATTTTATCTCTTATAGG
36782769 TATAACAGTCATTTTATCTCTTATAGG
1 TATAACAGTCATTTTATCTCTTATAGG
36782796 TATAACAGTCATTTTA-C-CTTATAGG
1 TATAACAGTCATTTTATCTCTTATAGG
36782821 GGAACTTCTG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.15
26 1 0.02
27 43 0.83
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (27 bp):
TATAACAGTCATTTTATCTCTTATAGG
Done.