Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 114 of 208
Found at i:37186465 original size:31 final size:30
Alignment explanation
Indices: 37186422--37186479 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
37186412 TCAAAGGTAG
*
37186422 TTCTTTTCTCTTTTCTGGCATTTCATTTCAT
1 TTCTTTTCTCTTTTCTCG-ATTTCATTTCAT
* *
37186453 TTCTTTTTTCTTTTTTCGATTTCATTT
1 TTCTTTTCTCTTTTCTCGATTTCATTT
37186480 TGTTCAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.09, C:0.19, G:0.05, T:0.67
Consensus pattern (30 bp):
TTCTTTTCTCTTTTCTCGATTTCATTTCAT
Found at i:37187241 original size:17 final size:18
Alignment explanation
Indices: 37187221--37187254 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37187211 TGTTATTTGT
37187221 TTGTTAATCTGT-TATTA
1 TTGTTAATCTGTATATTA
*
37187238 TTGTTTATCTGTATATT
1 TTGTTAATCTGTATATT
37187255 TATTTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.62
Consensus pattern (18 bp):
TTGTTAATCTGTATATTA
Found at i:37192489 original size:16 final size:16
Alignment explanation
Indices: 37192465--37192505 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
37192455 AATATTTTTC
37192465 AAAAA-AAAATGAAT-G
1 AAAAAGAAAATG-ATGG
*
37192480 AAAATGAAAATGATGG
1 AAAAAGAAAATGATGG
37192496 AAAAAGAAAA
1 AAAAAGAAAA
37192506 GAAAAAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (16 bp):
AAAAAGAAAATGATGG
Found at i:37192510 original size:10 final size:11
Alignment explanation
Indices: 37192495--37192538 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
37192485 GAAAATGATG
37192495 GAAAAAGAAAA
1 GAAAAAGAAAA
*
37192506 GAAAAAGAGAA
1 GAAAAAGAAAA
37192517 GAAGAAAGAAAA
1 GAA-AAAGAAAA
*
37192529 G-GAAAGAAAA
1 GAAAAAGAAAA
37192539 AGGAGAGACC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 8 0.28
11 13 0.45
12 8 0.28
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:37192552 original size:28 final size:29
Alignment explanation
Indices: 37192497--37192557 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
37192487 AAATGATGGA
*
37192497 AAAAGAAAAGAAAAAGAGAAGAAGAAAG-
1 AAAAGAAAAGAAAAAGAGAAGAACAAAGC
* *
37192525 AAAAGGAAAGAAAAAG-GAGAGACCAAAGC
1 AAAAGAAAAGAAAAAGAGA-AGAACAAAGC
37192554 AAAA
1 AAAA
37192558 ACCCGCAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 2 0.07
28 22 0.79
29 4 0.14
ACGTcount: A:0.70, C:0.05, G:0.25, T:0.00
Consensus pattern (29 bp):
AAAAGAAAAGAAAAAGAGAAGAACAAAGC
Found at i:37194434 original size:24 final size:24
Alignment explanation
Indices: 37194399--37194454 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
37194389 GTCCCAAAAG
37194399 TACAGTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
*
37194423 TATAGTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
37194447 TACAGTGG
1 TACAGTGG
37194455 GGGCAATCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (24 bp):
TACAGTGGATTGAACCTTGAAGAT
Found at i:37194888 original size:45 final size:45
Alignment explanation
Indices: 37194784--37195576 Score: 530
Period size: 44 Copynumber: 17.8 Consensus size: 45
37194774 AGATGATGAA
* *
37194784 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * * *
37194828 TCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGAGAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * * *
37194873 TCTTATCCCCCTGAAGTTGCAGTGG-GACAGACTGAAGATGGTGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGATAG-CAAG
* * ** **
37194918 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAATAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * *
37194962 TCTTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAGTTA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * *
37195006 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTGAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * * * * * * *
37195051 TCTTATCCCCCTGAAGTTGCAATGGGGTAGACTGAAGGTGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * ** *
37195096 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * *
37195140 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * *
37195184 TCTTATC-CCCATGAAGTTACAGTGGAGAAGACTAAAGATAGCGAA-
1 TCTTATCTCCC-TGAAGTTGCAGTGGAGCAGATTAAAGATAGC-AAG
* * * * ** **
37195229 TCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCAATAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * * *
37195273 TCTTATCTCCCTAAAGTTGCAATGGAACGGATTAAAGTTA-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * *
37195317 T-TTATCTCTCTAAAGTTACAGTGGAGCAGACTAAAGATAGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGC-AAG
* * * * **
37195361 TCTTATTTCCCTAAAGTTGCAGTGGAACAGATTTAAGCTATAAATTACAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--AT--AGCA-AG
* * * * * *
37195411 ATCTTATCTCTCTGAATTTGCAGTAGAGAAGA-T---CATATCAA-
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* * * * * * *
37195452 ACATTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGATACCAA-
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
* *
37195497 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CTAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGC-AAG
* * * *
37195541 TCCTATCTCCCTGAAGTTGCAGAGAAGCGGATTAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
37195577 ACGATGAATT
Statistics
Matches: 584, Mismatches: 137, Indels: 56
0.75 0.18 0.07
Matches are distributed among these distances:
40 1 0.00
41 22 0.04
42 2 0.00
43 45 0.08
44 268 0.46
45 209 0.36
46 7 0.01
47 2 0.00
48 1 0.00
49 2 0.00
50 1 0.00
51 24 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAGCAAG
Found at i:37195085 original size:178 final size:177
Alignment explanation
Indices: 37194782--37195562 Score: 738
Period size: 178 Copynumber: 4.4 Consensus size: 177
37194772 GAAGATGATG
*
37194782 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTG
* *
37194847 CAGTAGAGCAGACTGAAGAGAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAGAT
66 CAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAGAT
*
37194912 GGTGAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAT
131 GGT-AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAC
* * *
37194960 AATCTTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAATTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTG
* ** *
37195025 CAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAATGGGGTAGACTGAAGGT
66 CAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAGAT
* * *
37195090 GGCAAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAC
131 GG-TAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAC
*
37195138 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATC-CCCATGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCC-TGAAGTT
* * * * *** * *
37195202 ACAGTGGAGAAGACTAAAGATAGCGAA-TCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAG
65 GCAGTGGAGCAGACTGAAGAAAGC-AAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAG
**** * * * * **
37195266 CCAATAATCTTATCTCCCTAAAGTTGCAATGGAACGGATTAAAG-TTAC
129 ATGGTAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAC
* * * * * * * *
37195314 AAGT-TTATCTCTCTAAAGTTACAGTGGAGCAGACTAAAGATAGCGAA-TCTTATTTCCCTAAAG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTA-C-AAGTCTTATCTCCCTGAAG
* * * ** * * * *
37195377 TTGCAGTGGAACAGATTTAAGCTATAAATTACAGATCTTATCTCTCTGAATTTGCAGTAGAGA-A
63 TTGCAGTGGAGCAGACTGAAG----AAAGCA-AG-TCTTATCCCCCTGAAGTTGCAGT-GGGACA
* * * * * * * * * ** *
37195441 GA-T-CATAT--CAAACATTATCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGATACC
121 GACTGAAGATGGTAATC-TTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAC
* * * *
37195495 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAA-TCCTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTAC-AAGTCTTATCTCCCTGAAGTT
37195559 GCAG
65 GCAG
37195563 AGAAGCGGAT
Statistics
Matches: 496, Mismatches: 89, Indels: 34
0.80 0.14 0.05
Matches are distributed among these distances:
176 35 0.07
177 66 0.13
178 273 0.55
179 5 0.01
180 52 0.10
181 40 0.08
182 1 0.00
183 22 0.04
184 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (177 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAGAT
GGTAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGCCAAC
Found at i:37195260 original size:133 final size:132
Alignment explanation
Indices: 37194960--37195398 Score: 506
Period size: 133 Copynumber: 3.3 Consensus size: 132
37194950 TAAAGCCAAT
* * * * ** *
37194960 AATCTTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAG-TTACAAGTCTTATCTCCCTGAAATT
1 AATCTTATCTTCCTAAAGTTGCAGTGGAACAGATTAAAGCCAACAA-TCTTATCTCCCTGAAGTT
* * * ** * * * * * *
37195024 GCAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAATGGGGTAGACTGAAGG
65 GCAGTGGAGCGGATTAAAGTTA-CAAGTCTTAT-CCCCTGAAGTTACAGTGGAGAAGACTAAAGA
* *
37195089 TGGCA
128 TAGCG
* *
37195094 AATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAACAATCCTATCTCCCTGAAGTTG
1 AATCTTATCTTCCTAAAGTTGCAGTGGAACAGATTAAAGCCAACAATCTTATCTCCCTGAAGTTG
37195159 CAGTGGAGCGGATTAAAGTTACAAGTCTTATCCCCATGAAGTTACAGTGGAGAAGACTAAAGATA
66 CAGTGGAGCGGATTAAAGTTACAAGTCTTATCCCC-TGAAGTTACAGTGGAGAAGACTAAAGATA
37195224 GCG
130 GCG
* * * * *
37195227 AATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCAATAATCTTATCTCCCTAAAGTTG
1 AATCTTATCTTCCTAAAGTTGCAGTGGAACAGATTAAAGCCAACAATCTTATCTCCCTGAAGTTG
* * * * *
37195292 CAATGGAACGGATTAAAGTTACAAGT-TTATCTCTCTAAAGTTACAGTGGAGCAGACTAAAGATA
66 CAGTGGAGCGGATTAAAGTTACAAGTCTTATC-CCCTGAAGTTACAGTGGAGAAGACTAAAGATA
37195356 GCG
130 GCG
*
37195359 AATCTTAT-TTCCCTAAAGTTGCAGTGGAACAGATTTAAGC
1 AATCTTATCTT-CCTAAAGTTGCAGTGGAACAGATTAAAGC
37195399 TATAAATTAC
Statistics
Matches: 267, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
131 2 0.01
132 74 0.28
133 118 0.44
134 69 0.26
135 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (132 bp):
AATCTTATCTTCCTAAAGTTGCAGTGGAACAGATTAAAGCCAACAATCTTATCTCCCTGAAGTTG
CAGTGGAGCGGATTAAAGTTACAAGTCTTATCCCCTGAAGTTACAGTGGAGAAGACTAAAGATAG
CG
Found at i:37195309 original size:89 final size:88
Alignment explanation
Indices: 37194782--37195562 Score: 353
Period size: 89 Copynumber: 8.8 Consensus size: 88
37194772 GAAGATGATG
* * * ** * * *
37194782 AATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCTTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACAAATCTTATCTCCCTAAAGTTG
* * * * * *
37194847 CAGTAGAGCAGACTGAAGAGAGC
66 CAGTGGAACAGATTAAAGACAAC
* * * * * *****
37194870 AAGTCTTATCCCCCTGAAGTTGCAGTGGGACAGACTGAAGATGGTGAATCTTATCTCCCTAAAGT
1 AA-TCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAG-CCACAAATCTTATCTCCCTAAAGT
* * * *
37194935 TGCAGTAGAGCAGATTAAAGCCAAT
64 TGCAGTGGAACAGATTAAAGACAAC
* * * * * ** *
37194960 AATCTTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAA-TT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACAAATCTTATCTCCCT-AAAGTT
* * *
37195024 GCAGTGGAGCAGACTGAAGA-AAGC
65 GCAGTGGAACAGATTAAAGACAA-C
* * * *** * * *** *
37195048 AAGTCTTATCCCCCTGAAGTTGCAATGGGGTAGACTGAAGGTGGCAAATCTTATCTTCCTAAAGT
1 AA-TCCTATCTCCCTGAAGTTGCAGTGGAACAGA-TTAAAGCCACAAATCTTATCTCCCTAAAGT
* *
37195113 TGCAGTGGAGCAGATTAAAGCCAAC
64 TGCAGTGGAACAGATTAAAGACAAC
* * ** * *
37195138 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATC-CCCATGAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACAAATCTTATCTCCC-TAAAGTT
* * * *
37195202 ACAGTGGAGA-AGACTAAAGATAGC
65 GCAGTGGA-ACAGATTAAAGACAAC
* * * *
37195226 GAATCTTATTTTCCTGAAGTTGCAGTGGAACAGATTGAAGCCA-ATAATCTTATCTCCCTAAAGT
1 -AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACA-AATCTTATCTCCCTAAAGT
* * **
37195290 TGCAATGGAACGGATTAAAG-TTAC
64 TGCAGTGGAACAGATTAAAGACAAC
* * * * * * ** * *
37195314 AAGT-TTATCTCTCTAAAGTTACAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCCTAAAGT
1 AA-TCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCA-CAAATCTTATCTCCCTAAAGT
* *
37195378 TGCAGTGGAACAGATTTAAGCTATAAATTAC
64 TGCAGTGGAACAGA-TTAA---AGACA--AC
* * * * * * *
37195409 AGATCTTATCTCTCTGAATTTGCAGTAGAGA-AGATCATA---TCAAA-CATTATCTCCCTAAAG
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGA-ACAGATTAAAGCCACAAATC-TTATCTCCCTAAAG
* ** * * * *
37195469 TTGTAGTGGAGTAGGTTGAAGATACC
63 TTGCAGTGGAACAGATTAAAGACAAC
* * * * * * *
37195495 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATCCTATCTCCCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACAAATCTTATCTCCCTAAAGTTG
37195560 CAG
66 CAG
37195563 AGAAGCGGAT
Statistics
Matches: 524, Mismatches: 136, Indels: 66
0.72 0.19 0.09
Matches are distributed among these distances:
85 29 0.06
86 2 0.00
87 34 0.06
88 132 0.25
89 181 0.35
90 82 0.16
91 6 0.01
92 28 0.05
95 4 0.01
96 26 0.05
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (88 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCACAAATCTTATCTCCCTAAAGTTG
CAGTGGAACAGATTAAAGACAAC
Found at i:37195873 original size:194 final size:194
Alignment explanation
Indices: 37195640--37196059 Score: 610
Period size: 194 Copynumber: 2.2 Consensus size: 194
37195630 ACAAGTCTTC
* * * *
37195640 TCTCCTTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGAATCTTATTTCTCTGGCATTACGGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACAGTGAATCTTATTTCCCTGGCATTACAGTGG
*
37195705 AACAGATTAAAGCTGAAAACAACGAATCTTATTTCCCT-GACGTTGCAGTGTAACATATTAAAGC
66 AACAGATTAAAGCTGAAAACAACGAATCTTATTTCCCTAG-CGTTGCAGTGGAACATATTAAAGC
* * * *
37195769 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGTAGCAGATTGACGCCACC-AGCTTT
130 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGCCACCAATC-CT
37195833 A
194 A
* *
37195834 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACAGTGAATCTTATTTCCCTGGCGTTGCAGTGG
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACAGTGAATCTTATTTCCCTGGCATTACAGTGG
* ** * *
37195899 AACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTAGCGTTGCAGTGGAATATATTAAAGCT
66 AACAGATTAAAGCTGAAAACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACATATTAAAGCT
* *
37195964 ACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGAAGTAGATTGAAGCGACCAATCCTA
131 ACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGCCACCAATCCTA
* * * *
37196028 TCTCCCTAAAGTTGTAGTGGAGCGGATTAAAA
1 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAA
37196060 CAGCAATTCC
Statistics
Matches: 202, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
194 199 0.99
195 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (194 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACAGTGAATCTTATTTCCCTGGCATTACAGTGG
AACAGATTAAAGCTGAAAACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACATATTAAAGCT
ACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGCCACCAATCCTA
Found at i:37195896 original size:45 final size:47
Alignment explanation
Indices: 37195844--37195951 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 47
37195834 TCTCCCTGAA
* * *
37195844 GTTGCAGTGGAGCAGACTAAA-AA-CAGTGAATCTTATTTCCCTGGC
1 GTTGCAGTGGAACAGACTAAAGAAGCAGCGAATCTTATTTCCCTAGC
*
37195889 GTTGCAGTGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTAGC
1 GTTGCAGTGGAACAGACTAAA---GAA-GCAGCGAATCTTATTTCCCTAGC
37195940 GTTGCAGTGGAA
1 GTTGCAGTGGAA
37195952 TATATTAAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
45 19 0.36
49 2 0.04
51 32 0.60
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (47 bp):
GTTGCAGTGGAACAGACTAAAGAAGCAGCGAATCTTATTTCCCTAGC
Found at i:37198870 original size:20 final size:18
Alignment explanation
Indices: 37198845--37198887 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
37198835 ACAAAATTTT
37198845 AAAATTCATAATATTGTATA
1 AAAATTCA-AA-ATTGTATA
* *
37198865 AAAATTGAAAATTTTATA
1 AAAATTCAAAATTGTATA
37198883 AAAAT
1 AAAAT
37198888 GAAAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 2 0.10
20 7 0.33
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (18 bp):
AAAATTCAAAATTGTATA
Found at i:37199302 original size:7 final size:7
Alignment explanation
Indices: 37199284--37199315 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
37199274 ATTTTTTTCT
37199284 AATTTT-
1 AATTTTA
37199290 AATTTTA
1 AATTTTA
37199297 AATTTTA
1 AATTTTA
37199304 AATTTTA
1 AATTTTA
37199311 AATTT
1 AATTT
37199316 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:37199302 original size:13 final size:13
Alignment explanation
Indices: 37199284--37199326 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
37199274 ATTTTTTTCT
37199284 AATTTTAATTTTA
1 AATTTTAATTTTA
37199297 AATTTTAAATTTTA
1 AATTTT-AATTTTA
*
37199311 AA-TTTAATATTA
1 AATTTTAATTTTA
37199323 AATT
1 AATT
37199327 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 8 0.30
13 10 0.37
14 9 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTTAATTTTA
Found at i:37199334 original size:17 final size:17
Alignment explanation
Indices: 37199308--37199346 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
37199298 ATTTTAAATT
* *
37199308 TTAAATTTAATATTAAA
1 TTAAAATTAAAATTAAA
37199325 TTAAAATTAAAATTAAA
1 TTAAAATTAAAATTAAA
37199342 -TAAAA
1 TTAAAA
37199347 CAAGTTGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAATTAAAATTAAA
Found at i:37202379 original size:21 final size:22
Alignment explanation
Indices: 37202337--37202384 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
37202327 AAAATTATAT
*
37202337 CAAATAAATTTGTATTTTTAAA
1 CAAATAAATTTGTATTTATAAA
37202359 CAAA-AAATTTAGT-TTTATAAA
1 CAAATAAATTT-GTATTTATAAA
*
37202380 TAAAT
1 CAAAT
37202385 TACTTGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (22 bp):
CAAATAAATTTGTATTTATAAA
Found at i:37216045 original size:55 final size:55
Alignment explanation
Indices: 37215918--37216053 Score: 159
Period size: 56 Copynumber: 2.4 Consensus size: 55
37215908 GATCTAACAT
* *
37215918 TATGTAAAATTATTAAGCCAAAAATTTTTTCTTAATGGTTAGTAAAATTTATCAAA
1 TATGTAAAATTATTAAGCCAAAAA-TTTGTCTTAATGGTTAGTAAAATGTATCAAA
* * * * *
37215974 TAATCTCAAATTATTAAGTCCAAAAA-TTGTGTTAATGGTTATTAAAGTGT-TCAAAA
1 T-ATGTAAAATTATTAAG-CCAAAAATTTGTCTTAATGGTTAGTAAAATGTATC-AAA
37216030 TATGTAAAATTATTAAGCCAAAAA
1 TATGTAAAATTATTAAGCCAAAAA
37216054 AATTTTAAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
54 7 0.10
55 16 0.24
56 24 0.35
57 14 0.21
58 7 0.10
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (55 bp):
TATGTAAAATTATTAAGCCAAAAATTTGTCTTAATGGTTAGTAAAATGTATCAAA
Found at i:37216100 original size:29 final size:29
Alignment explanation
Indices: 37216057--37216692 Score: 932
Period size: 29 Copynumber: 22.2 Consensus size: 29
37216047 CCAAAAAAAT
* *
37216057 TTTAAGTTA-GTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216085 TTTAGGTTAGGGTTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
* *
37216114 TTTAGGTTAGTTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216143 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216171 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216200 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216228 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216257 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
37216285 TTTAGGTTAGGTTTAGGGTTTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGG--TTTTTAGTTAA
* *
37216316 TTTAGGTTAGGTTTAGGGGTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
* *
37216345 TTTAGGTTA-GATTAGGGGTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216373 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216402 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
* *
37216430 TTTAGGTTAGGTTTAAGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216459 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216487 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
* *
37216516 TTTAGGTTA-GATTAGGGGTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216544 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216573 TTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216601 TTTAGGTTAGGTTTGGGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
* *
37216630 TTTAGGTTA-GATTATGGTTTTTAGTTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
*
37216658 TTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
37216687 TTTAGG
1 TTTAGG
37216693 GTTTTTATTT
Statistics
Matches: 545, Mismatches: 51, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
28 238 0.44
29 278 0.51
31 29 0.05
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (29 bp):
TTTAGGTTAGGTTTAGGGTTTTTAGTTAA
Found at i:37216163 original size:57 final size:57
Alignment explanation
Indices: 37216057--37216692 Score: 972
Period size: 57 Copynumber: 11.1 Consensus size: 57
37216047 CCAAAAAAAT
* * * * *
37216057 TTTAAGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTTAGTTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
* * * *
37216114 TTTAGGTTAGTTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTAG-ATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
* * * *
37216171 TTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTA-GATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
* * * *
37216228 TTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTTAA
1 TTTAGGTTA-GATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
* *
37216285 TTTAGGTTAGGTTTAGGGTTTTTTTAGTTAATTTAGGTTAGGTTTAGGGGTTTTAATTAA
1 TTTAGGTTA-GATTAGGG--TTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
*
37216345 TTTAGGTTAGATTAGGGGTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
*
37216402 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAAGGTTTTTAATTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
37216459 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
*
37216516 TTTAGGTTAGATTAGGGGTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
* *
37216573 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTGGGGTTTTTAGTTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
*
37216630 TTTAGGTTAGATTATGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
1 TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
37216687 TTTAGG
1 TTTAGG
37216693 GTTTTTATTT
Statistics
Matches: 555, Mismatches: 19, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
57 476 0.86
58 28 0.05
59 26 0.05
60 25 0.05
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (57 bp):
TTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATTAA
Found at i:37216771 original size:26 final size:25
Alignment explanation
Indices: 37216740--37216788 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
37216730 CTTAAAAAAT
37216740 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
37216766 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
37216789 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:37216930 original size:24 final size:24
Alignment explanation
Indices: 37216902--37216954 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
37216892 GACGGTTCTT
*
37216902 CTTCCTCTGGTGCTGATTGTGGTC
1 CTTCCTCCGGTGCTGATTGTGGTC
* * *
37216926 CTTCCTCCGGTGGTGGTTGTGGTT
1 CTTCCTCCGGTGCTGATTGTGGTC
37216950 CTTCC
1 CTTCC
37216955 GGTTCGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.02, C:0.26, G:0.30, T:0.42
Consensus pattern (24 bp):
CTTCCTCCGGTGCTGATTGTGGTC
Found at i:37217253 original size:18 final size:18
Alignment explanation
Indices: 37217209--37217254 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
37217199 TATTCGGAAA
* *
37217209 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
37217227 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
37217245 AGGAAACATA
1 AGGATACATA
37217255 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:37217909 original size:7 final size:7
Alignment explanation
Indices: 37217899--37217923 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
37217889 TTATATACAT
37217899 AATACTA
1 AATACTA
37217906 AATACTA
1 AATACTA
37217913 AATACTA
1 AATACTA
37217920 AATA
1 AATA
37217924 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:37219066 original size:22 final size:22
Alignment explanation
Indices: 37219040--37219094 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
37219030 AAAAATGGAT
37219040 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37219062 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37219084 TTGAGAGAATT
1 TTGAGAGAATT
37219095 AGAAAGGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:37226116 original size:39 final size:38
Alignment explanation
Indices: 37225987--37226116 Score: 106
Period size: 35 Copynumber: 3.5 Consensus size: 38
37225977 TTCGTTGGTA
* * *
37225987 TATCCAACTAGAGCTAGGCTCACTATTTATTGTTGGAT
1 TATCCGACTAGAGTTGGGCTCACTATTTATTGTTGGAT
** * * * *
37226025 TATTGGACTAGTGTTGGGCGCA--A-ATATCGTTGG-T
1 TATCCGACTAGAGTTGGGCTCACTATTTATTGTTGGAT
* *
37226059 ATATCCAACTAGAATTGGGCTCACTATTTATTTGTTGGAT
1 -TATCCGACTAGAGTTGGGCTCACTATTTA-TTGTTGGAT
*
37226099 TATCCGACTAGCGTTGGG
1 TATCCGACTAGAGTTGGG
37226117 TGCAACTTCC
Statistics
Matches: 66, Mismatches: 20, Indels: 11
0.68 0.21 0.11
Matches are distributed among these distances:
34 1 0.02
35 24 0.36
36 1 0.02
37 1 0.02
38 17 0.26
39 21 0.32
40 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (38 bp):
TATCCGACTAGAGTTGGGCTCACTATTTATTGTTGGAT
Found at i:37226679 original size:24 final size:23
Alignment explanation
Indices: 37226634--37226681 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
37226624 ATAAGTTAAA
*
37226634 ATTTTGGTAAATGATGTATATAT
1 ATTTTGATAAATGATGTATATAT
* *
37226657 ATTTTGATATAATTATGTTTATAT
1 ATTTTGATA-AATGATGTATATAT
37226681 A
1 A
37226682 AGTAAATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (23 bp):
ATTTTGATAAATGATGTATATAT
Found at i:37227347 original size:54 final size:54
Alignment explanation
Indices: 37227245--37227349 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
37227235 ATGTGACTCT
* ** *
37227245 AGTCAGTGAGTTACACGGGCAGAGACACGAGCTGGGACATGGCTGTGTGTCTAA
1 AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTCTAA
** *
37227299 AGTCAGAGAGTTACACGGGTTGAGACACGGGCTGGGACACAGCCGTGTGTC
1 AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTC
37227350 CCAATTTCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.25, C:0.20, G:0.36, T:0.19
Consensus pattern (54 bp):
AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTCTAA
Found at i:37237132 original size:68 final size:68
Alignment explanation
Indices: 37237016--37237206 Score: 249
Period size: 68 Copynumber: 2.8 Consensus size: 68
37237006 CGACTTAATT
* * **
37237016 TGTTTCCATAGCCGAGCTATGGTCTTACGTAATGTAACCCAATGTTTATTGTCCTAGCAGACTCC
1 TGTTACCATAGCTGAGCTATGGTCTTACACAATGTAACCCAATGTTTATTGTCCTAGCAGACTCC
37237081 ATA
66 ATA
* * * * * * *
37237084 TGTTGCTATAGCTGAACTATGGTCTTATACAATGTAACCCTATGTTTATTGTCTTGGCAGACTCC
1 TGTTACCATAGCTGAGCTATGGTCTTACACAATGTAACCCAATGTTTATTGTCCTAGCAGACTCC
37237149 ATA
66 ATA
* *
37237152 TGTTACCATAG-TAGAGCTATGGTCTTACACAATGTAACCCCATGTTTATTTTCCT
1 TGTTACCATAGCT-GAGCTATGGTCTTACACAATGTAACCCAATGTTTATTGTCCT
37237207 GGAGGACTCT
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
67 1 0.01
68 104 0.99
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (68 bp):
TGTTACCATAGCTGAGCTATGGTCTTACACAATGTAACCCAATGTTTATTGTCCTAGCAGACTCC
ATA
Found at i:37241823 original size:19 final size:19
Alignment explanation
Indices: 37241778--37241840 Score: 63
Period size: 19 Copynumber: 3.1 Consensus size: 19
37241768 TTATAACTTT
37241778 TTTTAAAAATATAAATTTTGAAA
1 TTTTAAAAA-AT--ATTTTG-AA
* *
37241801 TTTTTATAAATATTTTGAA
1 TTTTAAAAAATATTTTGAA
*
37241820 TTTTAAAAAATGTTTTGAA
1 TTTTAAAAAATATTTTGAA
37241839 TT
1 TT
37241841 ATTGTAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 20 0.57
20 6 0.17
22 2 0.06
23 7 0.20
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (19 bp):
TTTTAAAAAATATTTTGAA
Found at i:37246341 original size:10 final size:10
Alignment explanation
Indices: 37246326--37246379 Score: 83
Period size: 10 Copynumber: 5.4 Consensus size: 10
37246316 TTCTCAGTGA
37246326 AAAAAATTAT
1 AAAAAATTAT
37246336 AAAAAATTAT
1 AAAAAATTAT
37246346 AAAAAA-TAT
1 AAAAAATTAT
*
37246355 ATAAAATTAT
1 AAAAAATTAT
37246365 AAAAAATATAT
1 AAAAAAT-TAT
37246376 AAAA
1 AAAA
37246380 TTTTCAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
9 8 0.20
10 25 0.62
11 7 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:37246389 original size:19 final size:19
Alignment explanation
Indices: 37246326--37246381 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
37246316 TTCTCAGTGA
*
37246326 AAAAAATTATAAAAAATTAT
1 AAAAAA-TATATAAAATTAT
37246346 AAAAAATATATAAAATTAT
1 AAAAAATATATAAAATTAT
37246365 AAAAAATATATAAAATT
1 AAAAAATATATAAAATT
37246382 TTCAAAAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 29 0.83
20 6 0.17
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAAAATATATAAAATTAT
Found at i:37251408 original size:50 final size:52
Alignment explanation
Indices: 37251292--37251416 Score: 155
Period size: 50 Copynumber: 2.4 Consensus size: 52
37251282 TTTTTCTAAC
* * * *
37251292 TCTTACATGATATGGTCTTCTGCCTATATGATTCCATAACCCACCAGTTACGG
1 TCTTACACGATATGGTCTTCTTCCTACATGA-TCCATAACCCACCAATTACGG
* * *
37251345 TCTTACACAATATGGTCTTCTTCCTACATG-T-CATAGCCCACCAATTATGG
1 TCTTACACGATATGGTCTTCTTCCTACATGATCCATAACCCACCAATTACGG
*
37251395 TCTTACACGATATGGTATTCTT
1 TCTTACACGATATGGTCTTCTT
37251417 TCAATGCCAT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 36 0.57
51 1 0.02
53 26 0.41
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.36
Consensus pattern (52 bp):
TCTTACACGATATGGTCTTCTTCCTACATGATCCATAACCCACCAATTACGG
Found at i:37252812 original size:14 final size:14
Alignment explanation
Indices: 37252793--37252820 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37252783 AACACTCTAA
37252793 AATTTTGAGAATTT
1 AATTTTGAGAATTT
37252807 AATTTTGAGAATTT
1 AATTTTGAGAATTT
37252821 GCAGTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
AATTTTGAGAATTT
Found at i:37281020 original size:25 final size:25
Alignment explanation
Indices: 37280970--37281021 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
37280960 TATAACGGGT
*
37280970 AGCTCCGAAGAGCCATCAATCGGGA
1 AGCTCCGAAGAGCCATCAATCAGGA
* *
37280995 AGCTCCGGATAGCCAT-ATATCAGGA
1 AGCTCCGAAGAGCCATCA-ATCAGGA
37281020 AG
1 AG
37281022 TTCAAGCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.15
Consensus pattern (25 bp):
AGCTCCGAAGAGCCATCAATCAGGA
Found at i:37285246 original size:19 final size:17
Alignment explanation
Indices: 37285223--37285281 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 17
37285213 TAAAAATGAA
37285223 AAAAAATATTAATAAATT
1 AAAAAATATTAA-AAATT
37285241 CCAAAAACAT-TTAAAAATT
1 --AAAAA-ATATTAAAAATT
37285260 AAAAAATTATTAAAAATAT
1 AAAAAA-TATTAAAAAT-T
37285279 AAA
1 AAA
37285282 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.03
17 6 0.17
18 8 0.23
19 9 0.26
20 9 0.26
21 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAATATTAAAAATT
Found at i:37297305 original size:3 final size:3
Alignment explanation
Indices: 37297297--37297329 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37297287 TAATCTTAAT
37297297 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
37297330 TGAGGGGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:37301671 original size:38 final size:38
Alignment explanation
Indices: 37301624--37301700 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
37301614 GAAGAGAATA
37301624 AAAATCAATCATAAAAAGAAAAGAAAAGTGAAGACTCT
1 AAAATCAATCATAAAAAGAAAAGAAAAGTGAAGACTCT
37301662 AAAATCAATCATAAAAAGAAAAGAAAAGTGAAGACTCT
1 AAAATCAATCATAAAAAGAAAAGAAAAGTGAAGACTCT
37301700 A
1 A
37301701 TAATGCACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.61, C:0.10, G:0.13, T:0.16
Consensus pattern (38 bp):
AAAATCAATCATAAAAAGAAAAGAAAAGTGAAGACTCT
Found at i:37304215 original size:13 final size:13
Alignment explanation
Indices: 37304197--37304221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37304187 CTTCTGGTTT
37304197 AACTTCTAAAATC
1 AACTTCTAAAATC
37304210 AACTTCTAAAAT
1 AACTTCTAAAAT
37304222 TGTGTCTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AACTTCTAAAATC
Found at i:37305780 original size:41 final size:41
Alignment explanation
Indices: 37305671--37305781 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
37305661 TTTAACATAT
* * * * *
37305671 TCACCGGCACTTAGCCTGCTAGGCTTATAGCTTGATTCATA
1 TCACTGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
37305712 TCA-TCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCCGA
1 TCACT-GGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
37305753 TCACTGGCACTTAGCCTGCTAGATTTATA
1 TCACTGGCACTTAGCCTGCTAGGTTTATA
37305782 GTCTGAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 58 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (41 bp):
TCACTGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:37305828 original size:40 final size:40
Alignment explanation
Indices: 37305669--37305830 Score: 96
Period size: 41 Copynumber: 4.0 Consensus size: 40
37305659 AATTTAACAT
* * ***
37305669 ATTCACCGGCACTTAGCCTGCTAG-GCTTATAGCTTGATTC
1 ATTCACCGGCACTTAGCCTGCTAGATC-TATAGCCTGAAAA
* * * * * ***
37305709 ATATCATCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCCG
1 AT-TCACCGGCACTTAGCCTGCTAGATCTATAGCCTGA--AAA
* * *
37305752 A-TCACTGGCACTTAGCCTGCTAGATTTATAGTCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTAGATCTATAGCCTGAAAA
* *
37305791 ATTCACCGGCATTTAGCCTGCTAGGTGCT-TAGCCTGAAAA
1 ATTCACCGGCACTTAGCCTGCTAGAT-CTATAGCCTGAAAA
37305831 TTTTAATTTC
Statistics
Matches: 93, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
39 1 0.01
40 33 0.35
41 58 0.62
43 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (40 bp):
ATTCACCGGCACTTAGCCTGCTAGATCTATAGCCTGAAAA
Found at i:37313545 original size:41 final size:41
Alignment explanation
Indices: 37313500--37313577 Score: 93
Period size: 41 Copynumber: 1.9 Consensus size: 41
37313490 ATCTGAGATT
* *
37313500 TTCAGGCCTAATGCCTAGCCGGCTTGATGCCGATGAATTAA
1 TTCAGACCTAATGCCTAGCAGGCTTGATGCCGATGAATTAA
* * * * *
37313541 TTCAGACTTGATGTCTAGCAGGCTTTATGCCGGTGAA
1 TTCAGACCTAATGCCTAGCAGGCTTGATGCCGATGAA
37313578 ATGTATCAGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (41 bp):
TTCAGACCTAATGCCTAGCAGGCTTGATGCCGATGAATTAA
Found at i:37316537 original size:41 final size:41
Alignment explanation
Indices: 37316434--37316544 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 41
37316424 TTTAACATAT
* * * *
37316434 TCACCGGCACTTAGCCTGCTAAGCTTATAGCCTGATTCATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
37316475 TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCCGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
*
37316516 TCACCGGCACTTAGCCTGCTAGATTTATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATA
37316545 GTCTGAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:37334314 original size:41 final size:41
Alignment explanation
Indices: 37334205--37334315 Score: 159
Period size: 41 Copynumber: 2.7 Consensus size: 41
37334195 TTTAACATAT
* * *
37334205 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTAATTCATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
* * *
37334246 TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCCGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
*
37334287 TCACCGGCACTTAGCCTGCTAGATTTATA
1 TCACCGGCACTTAGCCTGCTAGGTTTATA
37334316 GTCTGAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTAATTCAGA
Found at i:37337656 original size:47 final size:47
Alignment explanation
Indices: 37337603--37337837 Score: 138
Period size: 47 Copynumber: 5.1 Consensus size: 47
37337593 TCATATAAGA
* *
37337603 ATATTTATTATTAAAAATTTTATGAAATTATATGTCATTATTAAATT
1 ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
* * *
37337650 ATATTTA--A-TAATAATTATT-TTAAATTATACA-AATTCATATAAGA--
1 ATATTTATTATTAAAAATT-TTATGAAATTATATATAATT-AT-TAA-ATT
* * * *
37337694 AAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATT
1 ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
* * *
37337741 ATATTTA--A-TAATAATTATT-TTAAATTATACA-AATTCATATAAGA--
1 ATATTTATTATTAAAAATT-TTATGAAATTATATATAATT-AT-TAA-ATT
* * * * * *
37337785 AAAATTATTAGTAAGAGTTTTATGAAATTATATATTATTATTAAATT
1 ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
37337832 ATATTT
1 ATATTT
37337838 TTTAATAATT
Statistics
Matches: 140, Mismatches: 26, Indels: 44
0.67 0.12 0.21
Matches are distributed among these distances:
43 6 0.04
44 47 0.34
45 14 0.10
46 14 0.10
47 53 0.38
48 6 0.04
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (47 bp):
ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
Found at i:37337836 original size:16 final size:15
Alignment explanation
Indices: 37337815--37337860 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 15
37337805 TATGAAATTA
37337815 TATATTATTATTAAAT
1 TATATTATT-TTAAAT
37337831 TATATT-TTTT-AA-
1 TATATTATTTTAAAT
37337843 TA-ATTATTTTAAAT
1 TATATTATTTTAAAT
37337857 TATA
1 TATA
37337861 CAAATTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
11 3 0.12
12 6 0.23
13 4 0.15
14 4 0.15
15 3 0.12
16 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTATTTTAAAT
Found at i:37337891 original size:47 final size:47
Alignment explanation
Indices: 37337749--37337904 Score: 164
Period size: 47 Copynumber: 3.4 Consensus size: 47
37337739 TTATATTTAA
*
37337749 TAATAATTATTTTAAATTATACAAATTCATATAAGAAAAATTATTAG
1 TAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAG
* * * * * *
37337796 TAAGAGTT-TTATGAAATTATATATTATT-AT-TAA-ATTATATTT-TT--
1 TAATAATTATT-TTAAATTATACA-AATTCATATAAGA--AAATTTATTAG
37337840 TAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAG
1 TAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAG
37337887 TAATAATTATTTTAAATT
1 TAATAATTATTTTAAATT
37337905 TCATTAAATC
Statistics
Matches: 85, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
43 3 0.04
44 23 0.27
45 8 0.09
46 8 0.09
47 40 0.47
48 3 0.04
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (47 bp):
TAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTAG
Found at i:37337904 original size:91 final size:91
Alignment explanation
Indices: 37337589--37337894 Score: 506
Period size: 91 Copynumber: 3.4 Consensus size: 91
37337579 TGATTTTAGT
* * * * *
37337589 AAATTCATATAAGAATATTTATTATTAAAAATTTTATGAAATTATATGTCATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTAGTAAGAATTTTATGAAATTATATATTATTATTAAATTATAT
37337654 TTAATAATAATTATTTTAAATTATAC
66 TTAATAATAATTATTTTAAATTATAC
37337680 AAATTCATATAAGAAAATTTATTA-TCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 AAATTCATATAAGAAAATTTATTAGT-AAGAATTTTATGAAATTATATATTATTATTAAATTATA
37337744 TTTAATAATAATTATTTTAAATTATAC
65 TTTAATAATAATTATTTTAAATTATAC
* *
37337771 AAATTCATATAAGAAAAATTATTAGTAAGAGTTTTATGAAATTATATATTATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTAGTAAGAATTTTATGAAATTATATATTATTATTAAATTATAT
**
37337836 TTTTTAATAATTATTTTAAATTATAC
66 TTAATAATAATTATTTTAAATTATAC
*
37337862 AAATTCATATAAGAAAATTTATTAGTAATAATT
1 AAATTCATATAAGAAAATTTATTAGTAAGAATT
37337895 ATTTTAAATT
Statistics
Matches: 202, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
90 1 0.00
91 200 0.99
92 1 0.00
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
AAATTCATATAAGAAAATTTATTAGTAAGAATTTTATGAAATTATATATTATTATTAAATTATAT
TTAATAATAATTATTTTAAATTATAC
Found at i:37337982 original size:22 final size:24
Alignment explanation
Indices: 37337956--37338002 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
37337946 ATTATTTCAA
37337956 ATTAT-ATTTTA-T-AATCTCATAT
1 ATTATAATTTTAGTAAAT-TCATAT
37337978 ATTATAATTTTAGTAAATTCATAT
1 ATTATAATTTTAGTAAATTCATAT
37338002 A
1 A
37338003 AGAATATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 8 0.36
25 3 0.14
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.51
Consensus pattern (24 bp):
ATTATAATTTTAGTAAATTCATAT
Found at i:37338063 original size:18 final size:17
Alignment explanation
Indices: 37338022--37338057 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
37338012 ATTATAAAGA
37338022 ATTTT-ATTAAATATAT
1 ATTTTAATTAAATATAT
37338038 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
37338054 ATTT
1 ATTT
37338058 AATAATAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:37338262 original size:44 final size:47
Alignment explanation
Indices: 37338213--37338309 Score: 130
Period size: 47 Copynumber: 2.1 Consensus size: 47
37338203 CTATTACACC
* * *
37338213 TCCATTCTATTTAACCAAAC-ACAAAAA-TA-CTATTACA-CCTCTAT
1 TCCATTCCATTCAACCAAACAAAAAAAATTACCTATTA-AGCCTCTAT
37338257 TCCATTCCATTCAACCAAACAAAAAAAATTACCTATTAAGCCTCTAT
1 TCCATTCCATTCAACCAAACAAAAAAAATTACCTATTAAGCCTCTAT
37338304 TCCATT
1 TCCATT
37338310 AGACCTCTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 18 0.39
45 6 0.13
46 3 0.07
47 19 0.41
ACGTcount: A:0.40, C:0.28, G:0.01, T:0.31
Consensus pattern (47 bp):
TCCATTCCATTCAACCAAACAAAAAAAATTACCTATTAAGCCTCTAT
Found at i:37338316 original size:16 final size:16
Alignment explanation
Indices: 37338297--37338344 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
37338287 ACCTATTAAG
*
37338297 CCTCTATTCCATTAGA
1 CCTCTATTCCATTACA
37338313 CCTCTATTCCATTACA
1 CCTCTATTCCATTACA
* *
37338329 TCTCTATTTCATTACA
1 CCTCTATTCCATTACA
37338345 GCGAACCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (16 bp):
CCTCTATTCCATTACA
Found at i:37344359 original size:5 final size:5
Alignment explanation
Indices: 37344345--37344377 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
37344335 ATGGAGACTT
37344345 AATT- AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATT
37344378 CGAGATTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
AATTA
Found at i:37344925 original size:17 final size:15
Alignment explanation
Indices: 37344896--37344937 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
37344886 AAATAATAAA
37344896 ATATATTTTTATTTT
1 ATATATTTTTATTTT
*
37344911 ATATATTTTTATATT
1 ATATATTTTTATTTT
37344926 -T-TATTTTTATTT
1 ATATATTTTTATTT
37344938 AAAAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
15 14 0.56
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
ATATATTTTTATTTT
Found at i:37344948 original size:28 final size:29
Alignment explanation
Indices: 37344899--37344955 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
37344889 TAATAAAATA
* * * *
37344899 TATTTTTATTTTATATATTTTTA-TATTT
1 TATTTTTATTTAAAAAAATTTTATTATTT
37344927 TATTTTTATTTAAAAAAATTTTATTATTT
1 TATTTTTATTTAAAAAAATTTTATTATTT
37344956 AAATTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (29 bp):
TATTTTTATTTAAAAAAATTTTATTATTT
Found at i:37372282 original size:10 final size:12
Alignment explanation
Indices: 37372253--37372317 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
37372243 GGTGTCTCCC
37372253 TCTCTTCTCATT
1 TCTCTTCTCATT
*
37372265 TCTTTTCT-ATT
1 TCTCTTCTCATT
37372276 T-TCTTCT--TT
1 TCTCTTCTCATT
* *
37372285 TCTTTTCTCCTT
1 TCTCTTCTCATT
*
37372297 TCTCTT-TTATT
1 TCTCTTCTCATT
*
37372308 TCTTTTCTCA
1 TCTCTTCTCA
37372318 ATCGTTGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
9 3 0.07
10 10 0.24
11 12 0.29
12 16 0.39
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (12 bp):
TCTCTTCTCATT
Found at i:37372291 original size:20 final size:23
Alignment explanation
Indices: 37372253--37372317 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
37372243 GGTGTCTCCC
37372253 TCTCTTCTCATTTCTTTTCT-ATT
1 TCTCTTCT-ATTTCTTTTCTCATT
*
37372276 T-TCTTCT-TTTCTTTTCTCCTT
1 TCTCTTCTATTTCTTTTCTCATT
*
37372297 TCTCTTTTATTTCTTTTCTCA
1 TCTCTTCTATTTCTTTTCTCA
37372318 ATCGTTGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 10 0.28
21 3 0.08
22 11 0.31
23 12 0.33
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (23 bp):
TCTCTTCTATTTCTTTTCTCATT
Found at i:37384202 original size:50 final size:50
Alignment explanation
Indices: 37384083--37384270 Score: 175
Period size: 50 Copynumber: 3.7 Consensus size: 50
37384073 AAGAGATCTT
* *
37384083 ATGTAAGACCATGTCTGGGACATGG-GATTGGCATCATTGAGGTTATGAGAGTTCCC
1 ATGTAAGACCATGTCTGGGATATGGCG-TTGGCA-C--CGA-G--ATGAGAGTTCCC
* * *
37384139 ATGTAAGACCATGTGTAGGATATGGCGTTGGCACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATGAGAGTTCCC
* * * * * * *
37384189 CTGTAAGACCATGTCTGGGACATGAC-ATGAGCACCGATAAGAGAATTCCC
1 ATGTAAGACCATGTCTGGGATATGGCGTTG-GCACCGAGATGAGAGTTCCC
37384239 ATGTAAGACCAT-TCTGGGATATGGCGTTGGCA
1 ATGTAAGACCATGTCTGGGATATGGCGTTGGCA
37384271 GTACAAAAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
49 16 0.15
50 61 0.55
52 1 0.01
53 2 0.02
55 1 0.01
56 28 0.25
57 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
ATGTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGATGAGAGTTCCC
Found at i:37393670 original size:18 final size:19
Alignment explanation
Indices: 37393630--37393673 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
37393620 TAAAAAAACG
37393630 TTTTGAAATTGAATAATGA
1 TTTTGAAATTGAATAATGA
37393649 -TTTGTAAA-TGAATAAT-A
1 TTTTG-AAATTGAATAATGA
37393666 TTTTGAAA
1 TTTTGAAA
37393674 ACGAACGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.17
18 16 0.70
19 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTTGAAATTGAATAATGA
Found at i:37394986 original size:21 final size:21
Alignment explanation
Indices: 37394953--37394993 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37394943 CTGCGTACGC
37394953 GAGCGCGTAGAGTAGACACAT
1 GAGCGCGTAGAGTAGACACAT
* * *
37394974 GAGCGTGTGGAGTAGCCACA
1 GAGCGCGTAGAGTAGACACA
37394994 CGGCCATGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.20, G:0.37, T:0.15
Consensus pattern (21 bp):
GAGCGCGTAGAGTAGACACAT
Found at i:37403386 original size:20 final size:19
Alignment explanation
Indices: 37403304--37403385 Score: 85
Period size: 20 Copynumber: 4.2 Consensus size: 19
37403294 TATTTTTGTT
*
37403304 AAAA-TATCGATACTTAAG
1 AAAAGTATCGATACTTAAC
*
37403322 AACAAGTATCGATATTTTAAC
1 AA-AAGTATCGATA-CTTAAC
* * *
37403343 AAAACTATTGATATTTAATC
1 AAAAGTATCGATACTTAA-C
37403363 AAAAGTATCGATACTTAAC
1 AAAAGTATCGATACTTAAC
37403382 AAAA
1 AAAA
37403386 AATATCATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
18 2 0.04
19 12 0.23
20 33 0.62
21 6 0.11
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAGTATCGATACTTAAC
Found at i:37405334 original size:16 final size:17
Alignment explanation
Indices: 37405313--37405347 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
37405303 TGATATAACA
37405313 AATAAAAA-TGTTTTTG
1 AATAAAAATTGTTTTTG
37405329 AATAAAAATTGTTTTTG
1 AATAAAAATTGTTTTTG
37405346 AA
1 AA
37405348 CAAAGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
AATAAAAATTGTTTTTG
Found at i:37405516 original size:20 final size:22
Alignment explanation
Indices: 37405455--37405518 Score: 80
Period size: 20 Copynumber: 3.0 Consensus size: 22
37405445 CACTTCAAAT
* *
37405455 ATTTTT-AACTCAAGTGAAATA
1 ATTTTTAAAATCAAGTGAAACA
37405476 ATTTTTAAAATCAAGTGAAACA
1 ATTTTTAAAATCAAGTGAAACA
*
37405498 A-TTTT-ATATCAAGTGAAACA
1 ATTTTTAAAATCAAGTGAAACA
37405518 A
1 A
37405519 GTGAAAAACC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
20 15 0.38
21 10 0.26
22 14 0.36
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.34
Consensus pattern (22 bp):
ATTTTTAAAATCAAGTGAAACA
Found at i:37405566 original size:20 final size:20
Alignment explanation
Indices: 37405541--37405586 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37405531 TTAAAACAAA
*
37405541 AAGTATCAATATTTTTTAAT
1 AAGTATCAATATATTTTAAT
***
37405561 AAGTATTGGTATATTTTAAT
1 AAGTATCAATATATTTTAAT
37405581 AAGTAT
1 AAGTAT
37405587 TGATGCCCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (20 bp):
AAGTATCAATATATTTTAAT
Found at i:37406610 original size:8 final size:8
Alignment explanation
Indices: 37406597--37406642 Score: 74
Period size: 8 Copynumber: 5.6 Consensus size: 8
37406587 TTAAATTAAA
37406597 AAAAATTT
1 AAAAATTT
37406605 AAAAATTT
1 AAAAATTT
37406613 AAAAATTT
1 AAAAATTT
37406621 AAAAAATTT
1 -AAAAATTT
*
37406630 AAAAAATT
1 AAAAATTT
37406638 AAAAA
1 AAAAA
37406643 AATAATTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
8 28 0.78
9 8 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
AAAAATTT
Found at i:37406617 original size:9 final size:9
Alignment explanation
Indices: 37406596--37406645 Score: 77
Period size: 9 Copynumber: 5.8 Consensus size: 9
37406586 GTTAAATTAA
37406596 AAAAAATTT
1 AAAAAATTT
37406605 -AAAAATTT
1 AAAAAATTT
37406613 -AAAAATTT
1 AAAAAATTT
37406621 AAAAAATTT
1 AAAAAATTT
*
37406630 AAAAAATTA
1 AAAAAATTT
37406639 AAAAAAT
1 AAAAAAT
37406646 AATTAAACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
8 16 0.41
9 23 0.59
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAAAATTT
Found at i:37406625 original size:17 final size:17
Alignment explanation
Indices: 37406597--37406643 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
37406587 TTAAATTAAA
37406597 AAAAATTT-AAAAATTT
1 AAAAATTTAAAAAATTT
37406613 AAAAATTTAAAAAATTT
1 AAAAATTTAAAAAATTT
*
37406630 AAAAAATTAAAAAA
1 AAAAATTTAAAAAA
37406644 ATAATTAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 8 0.28
17 21 0.72
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTTAAAAAATTT
Found at i:37407509 original size:29 final size:27
Alignment explanation
Indices: 37407467--37407521 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
37407457 AAAAAGAAAG
* *
37407467 AAAAATATCCAATTGGTTTGAAAAAAATA
1 AAAAATATCAAATT--TTAGAAAAAAATA
*
37407496 AAAAATATTAAATTTTAGAAAAAAAT
1 AAAAATATCAAATTTTAGAAAAAAAT
37407522 GATTAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 11 0.48
29 12 0.52
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAAATATCAAATTTTAGAAAAAAATA
Found at i:37425707 original size:16 final size:18
Alignment explanation
Indices: 37425683--37425719 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37425673 CAATTCATTA
37425683 ATACACAA-T-CAAATTT
1 ATACACAATTGCAAATTT
*
37425699 ATACTCAATTGCAAATTT
1 ATACACAATTGCAAATTT
37425717 ATA
1 ATA
37425720 TCACTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (18 bp):
ATACACAATTGCAAATTT
Found at i:37432153 original size:18 final size:17
Alignment explanation
Indices: 37432125--37432159 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37432115 TCCAGTTTCT
37432125 TCCTTTTTTCAAATAAA
1 TCCTTTTTTCAAATAAA
*
37432142 TCCTTATTTTCAATTAAA
1 TCCTT-TTTTCAAATAAA
37432160 ACACATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (17 bp):
TCCTTTTTTCAAATAAA
Found at i:37433549 original size:19 final size:19
Alignment explanation
Indices: 37433515--37433579 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
37433505 ATTTTAAAAA
37433515 TTAAAAATAATAAAAATATTT
1 TTAAAAAT--TAAAAATATTT
37433536 TTAAAAATTAAAAATCA-TT
1 TTAAAAATTAAAAAT-ATTT
** *
37433555 AGAAATATTAAAAATATTT
1 TTAAAAATTAAAAATATTT
37433574 TTAAAA
1 TTAAAA
37433580 TTTTAAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 1 0.03
19 26 0.72
20 1 0.03
21 8 0.22
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAATTAAAAATATTT
Found at i:37433560 original size:10 final size:9
Alignment explanation
Indices: 37433510--37433572 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
37433500 TTTAAATTTT
37433510 AAAA-ATTA
1 AAAATATTA
*
37433518 AAAATAATA
1 AAAATATTA
*
37433527 AAAATATTTTT
1 AAAATA--TTA
37433538 AAAA-ATTA
1 AAAATATTA
37433546 AAAATCATTA
1 AAAAT-ATTA
*
37433556 GAAATATTA
1 AAAATATTA
37433565 AAAATATT
1 AAAATATT
37433573 TTTAAAATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
8 10 0.23
9 20 0.45
10 9 0.20
11 5 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAATATTA
Found at i:37433570 original size:38 final size:39
Alignment explanation
Indices: 37433514--37433588 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 39
37433504 AATTTTAAAA
37433514 ATTAAAAATAATAAAAATATTTTTAAAA-ATTAAAAATC
1 ATTAAAAATAATAAAAATATTTTTAAAATATTAAAAATC
* * *
37433552 ATTAGAAATATTAAAAATATTTTTAAAATTTTAAAAA
1 ATTAAAAATAATAAAAATATTTTTAAAATATTAAAAA
37433589 ACTTAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 26 0.79
39 7 0.21
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (39 bp):
ATTAAAAATAATAAAAATATTTTTAAAATATTAAAAATC
Found at i:37433587 original size:19 final size:19
Alignment explanation
Indices: 37433527--37433587 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
37433517 AAAAATAATA
*
37433527 AAAATATTTTTAAAA-ATT
1 AAAATATTTTTAAAATTTT
** *
37433545 AAAA-ATCATTAGAAATATTA
1 AAAATATTTTTA-AAAT-TTT
37433565 AAAATATTTTTAAAATTTT
1 AAAATATTTTTAAAATTTT
37433584 AAAA
1 AAAA
37433588 AACTTAATTA
Statistics
Matches: 32, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
17 5 0.16
18 7 0.22
19 6 0.19
20 9 0.28
21 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAATATTTTTAAAATTTT
Found at i:37433723 original size:10 final size:10
Alignment explanation
Indices: 37433710--37433757 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
37433700 AAAACTATTA
37433710 AATTTTTAAT
1 AATTTTTAAT
37433720 AATTTTT-AT
1 AATTTTTAAT
*
37433729 ACTTTTTAAT
1 AATTTTTAAT
37433739 AA-TTTTAAT
1 AATTTTTAAT
*
37433748 GATTTTTAAT
1 AATTTTTAAT
37433758 TTTTAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 16 0.48
10 17 0.52
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:37433736 original size:19 final size:19
Alignment explanation
Indices: 37433711--37433757 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
37433701 AAACTATTAA
*
37433711 ATTTTTAATAATTTTTAT-
1 ATTTTTAATAATTTTAATG
37433729 ACTTTTTAATAATTTTAATG
1 A-TTTTTAATAATTTTAATG
37433749 ATTTTTAAT
1 ATTTTTAAT
37433758 TTTTAAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 1 0.04
19 24 0.92
20 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTAATAATTTTAATG
Found at i:37435476 original size:598 final size:596
Alignment explanation
Indices: 37434343--37435523 Score: 1789
Period size: 598 Copynumber: 2.0 Consensus size: 596
37434333 GATGCGGCTA
* *
37434343 GGAATTAGGACTGGCAACGATGCAAGTGCTGTTGCTCGAGTCTATCGTTCAATTGGTCAGGGCTA
1 GGAATTAGGACTAGCAACGATGCAAGTGCTGTTGCTCGAGTCTATCGTTCAATTGATCAGGGCTA
* * * *
37434408 CTTTGCCACCATCCCCAGCTGTTGAGGATGACCAACTGTGTTGGAGGTGGTCCACAAGGGGTCAA
66 CTTTACCACCATCCCCAGCTGCTGAGGATGACCAACTATGTTGGAGATGGTCCACAAGGGGTCAA
* * *
37434473 TTCTCTTCTTCGGCCACTTAGCATCTGTTTGGAAGTGAGGGTTTGTCGAGGTATGGCTACGGGCA
131 TTCTCTTCTTCAGCCACTTAGCATCTGTTTGGAAGTAAGGGTTTGTCGAGGTATGGCTACGGACA
* * *
37434538 TACATTGCCTTTGGTGCAAGGATGCTAATAAGACTACCGTACATGTTGTCTAAGACTGCTTTTTT
196 TACATTGCCTTTGGTACAAGGATACTAATAAGACTACCGTACATGTTGTCTAAGACTCCTTTTTT
**
37434603 GCAAAAAGTTTGTGTGGTGCTCCATCGTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGG
261 GCAAAAAGTTTGTGTGGCACTCCATCGTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGG
* *
37434668 GTGGCTTTGGTGGAATTTGCAATATAGGGGTAGCATAGAGTGGATGGATGGTGAATGGTCGATGT
326 GTGGCTTTGGTGGAATTTGCAATATAGAGGTAGCATAGAGTGGATGGATGGTGAATGGTCGACGT
* * * *
37434733 TGTTTTCTATTATTTTTTAGCATATTTGAAAGAGTTAAAACGAGTATATTTTTGCAACTCCAATA
391 TGTTTTCTATTATTTTTTAGAATATTTGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATA
*
37434798 GCAGCAAATATAAGGTAGTGGTGTCAAATGTTGCATGGGCATGTAGCATGACTAGTATTTGTATG
456 GCAGCAAATATAAGGTAGTGGTGTCAAATGTTGCATGGGCACGTAGCATGACTAGTATTTGTATG
* * *
37434863 CATGAACTTGTGTTGAGTAGTAGGGCTAGTTATTGCTGTTGGCAACCATTAGATATGGGTTTGTT
521 CATGAACTTGTGTTGAGTAGTAGGGCTAGTCATCGCTATTGGCAACCATTAGATATGGGTTTGTT
37434928 CAACATAGCTG
586 CAACATAGCTG
* ** *
37434939 GGAATTAGGACTAGCAATGATG-TGGTTGCTGTTGC-CTGAGTCTATCGTTCAGTTGATCAGGGC
1 GGAATTAGGACTAGCAACGATGCAAG-TGCTGTTGCTC-GAGTCTATCGTTCAATTGATCAGGGC
* * * * * *
37435002 TACTTTACCACCATCCTCGGTTGCTGAGGATGACCAGCTATGTTGGAGATGGTCCATAGGGGGTC
64 TACTTTACCACCATCCCCAGCTGCTGAGGATGACCAACTATGTTGGAGATGGTCCACAAGGGGTC
** *
37435067 AATTCTCTTCTTCAGCCA-TTCAGCATCTGTTTGGCGGTAAGGGTTTGTCGAGTTATGGCTACGG
129 AATTCTCTTCTTCAGCCACTT-AGCATCTGTTTGGAAGTAAGGGTTTGTCGAGGTATGGCTACGG
* *
37435131 ACATACATTGCCTTTGGTACTAGGATACTAATAAGACTACCGTACATGTTGTTTGAA-ACTACCT
193 ACATACATTGCCTTTGGTACAAGGATACTAATAAGACTACCGTACATGTTGTCT-AAGACT-CC-
* * * * *
37435195 TTTTTTGCAAAAAGTTTGTGTGGCACTCCATTGTCCTTGGATTATGGACGATTTATTGGCTTGTT
255 TTTTTTGCAAAAAGTTTGTGTGGCACTCCATCGTCCCTAGATTATGGACAATTTATTAGCTTGTT
**
37435260 GCAGGGGTGGCTTTGGTGGAATTTGCGGTATAGAGGTAGCATAGAGTGGATGGATGGTGAATGGT
320 GCAGGGGTGGCTTTGGTGGAATTTGCAATATAGAGGTAGCATAGAGTGGATGGATGGTGAATGGT
*
37435325 CTG-CGTTGTTTTCTATTATTTTTTATAATATTTGAAAGAGCTAAAACAAGTATATTTTTACAAC
385 C-GACGTTGTTTTCTATTATTTTTTAGAATATTTGAAAGAGCTAAAACAAGTATATTTTTACAAC
37435389 TCCAATAGCAGCAAATATTAA-GTAGTGGTGTCAAATGTTGCATGGGCACGTAGCATGACTAGTA
449 TCCAATAGCAGCAAATA-TAAGGTAGTGGTGTCAAATGTTGCATGGGCACGTAGCATGACTAGTA
* * * *
37435453 TTTGTATGCATGAACTTGTGTTGAGTAGTAGGGCTAGTCATCGCTATTGGCAATCGTTTGATGTG
513 TTTGTATGCATGAACTTGTGTTGAGTAGTAGGGCTAGTCATCGCTATTGGCAACCATTAGATATG
37435518 GGTTTG
578 GGTTTG
37435524 GTTAAGGTCA
Statistics
Matches: 526, Mismatches: 51, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
595 4 0.01
596 216 0.41
597 3 0.01
598 299 0.57
599 4 0.01
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (596 bp):
GGAATTAGGACTAGCAACGATGCAAGTGCTGTTGCTCGAGTCTATCGTTCAATTGATCAGGGCTA
CTTTACCACCATCCCCAGCTGCTGAGGATGACCAACTATGTTGGAGATGGTCCACAAGGGGTCAA
TTCTCTTCTTCAGCCACTTAGCATCTGTTTGGAAGTAAGGGTTTGTCGAGGTATGGCTACGGACA
TACATTGCCTTTGGTACAAGGATACTAATAAGACTACCGTACATGTTGTCTAAGACTCCTTTTTT
GCAAAAAGTTTGTGTGGCACTCCATCGTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGG
GTGGCTTTGGTGGAATTTGCAATATAGAGGTAGCATAGAGTGGATGGATGGTGAATGGTCGACGT
TGTTTTCTATTATTTTTTAGAATATTTGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATA
GCAGCAAATATAAGGTAGTGGTGTCAAATGTTGCATGGGCACGTAGCATGACTAGTATTTGTATG
CATGAACTTGTGTTGAGTAGTAGGGCTAGTCATCGCTATTGGCAACCATTAGATATGGGTTTGTT
CAACATAGCTG
Found at i:37435813 original size:55 final size:55
Alignment explanation
Indices: 37435739--37435900 Score: 231
Period size: 53 Copynumber: 3.0 Consensus size: 55
37435729 ACATGCTATG
* * *
37435739 TAACAACCAA-TTAGACATATAAACAATCGATTCAAAATAAGCAATATTCCAACA
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
** * *
37435793 TAACAATTGATTTAAACATATAAACAATCG--TCAAAAGAAGTAGTATTCCAACA
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
*
37435846 TGACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
37435901 ATTAAGAAGA
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
53 47 0.51
54 7 0.08
55 39 0.42
ACGTcount: A:0.51, C:0.18, G:0.07, T:0.24
Consensus pattern (55 bp):
TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
Found at i:37438769 original size:28 final size:28
Alignment explanation
Indices: 37438706--37438803 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37438696 ATATTAAGTC
*
37438706 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37438733 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37438761 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37438790 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37438804 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37455482 original size:22 final size:24
Alignment explanation
Indices: 37455437--37455483 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
37455427 AGGTTGAAAC
37455437 ACCTTATTCTAATCAATATCAAATAG
1 ACCTTATTCTAAT-AATA-CAAATAG
37455463 ACCTTATTCTAAT-ATA-AAATA
1 ACCTTATTCTAATAATACAAATA
37455484 AAAGAAGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 3 0.14
26 13 0.62
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (24 bp):
ACCTTATTCTAATAATACAAATAG
Found at i:37459209 original size:13 final size:13
Alignment explanation
Indices: 37459190--37459219 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
37459180 ATATTTATGA
37459190 AAAAAAATTTAAAT
1 AAAAAAA-TTAAAT
37459204 AAAAAAATTAAAT
1 AAAAAAATTAAAT
37459217 AAA
1 AAA
37459220 TATTTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAAATTAAAT
Found at i:37459505 original size:20 final size:20
Alignment explanation
Indices: 37459463--37459509 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
37459453 TGAGGCTTTG
*
37459463 AATCAATTTGAATAAAATCA
1 AATCAATTTGAATAAAATAA
* **
37459483 AATCAATTTGATTGGAATAA
1 AATCAATTTGAATAAAATAA
37459503 AATCAAT
1 AATCAAT
37459510 CAAATCAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (20 bp):
AATCAATTTGAATAAAATAA
Found at i:37461961 original size:24 final size:25
Alignment explanation
Indices: 37461925--37461971 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
37461915 AAGTGTATAA
*
37461925 TAACTACCTTTAT-AGATAAAATCT
1 TAACTACCTTTATAAGAAAAAATCT
37461949 TAACTA-CTGTTATAAGAAAAAAT
1 TAACTACCT-TTATAAGAAAAAAT
37461972 AGAATTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 10 0.50
25 8 0.40
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (25 bp):
TAACTACCTTTATAAGAAAAAATCT
Found at i:37466403 original size:20 final size:20
Alignment explanation
Indices: 37466371--37466440 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
37466361 TTGTGCGGGA
37466371 TTGCACTTT-GGTGCCTCTGT
1 TTGCA-TTTCGGTGCCTCTGT
*
37466391 TTGCATTTCGGTGCCTTTGTAT
1 TTGCATTTCGGTGCCTCTG--T
* *
37466413 TTGCACTACGGTGCCTCTGT
1 TTGCATTTCGGTGCCTCTGT
*
37466433 TAGCATTT
1 TTGCATTT
37466441 TGATGCTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
19 3 0.08
20 20 0.50
22 17 0.43
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (20 bp):
TTGCATTTCGGTGCCTCTGT
Found at i:37467548 original size:27 final size:28
Alignment explanation
Indices: 37467518--37467571 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
37467508 CAAAATTCAT
*
37467518 ACTTTAATTA-TAAAATAATT-AATTTTC
1 ACTTAAATTATTAAAAT-ATTGAATTTTC
37467545 ACTTAAATTATTAAAATATTGAATTTT
1 ACTTAAATTATTAAAATATTGAATTTT
37467572 AATTATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (28 bp):
ACTTAAATTATTAAAATATTGAATTTTC
Found at i:37469762 original size:20 final size:20
Alignment explanation
Indices: 37469733--37469797 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
37469723 AGTTGCAAGA
37469733 TTTAGAGCTTGCCATTATGG
1 TTTAGAGCTTGCCATTATGG
* ** *
37469753 TTTAGTGCTTGCCAACGCATGA
1 TTTAGAGCTTGCC-A-TTATGG
37469775 TTTAGAGCTTGCCATTATGG
1 TTTAGAGCTTGCCATTATGG
37469795 TTT
1 TTT
37469798 TTGCTTTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 18 0.51
21 2 0.06
22 15 0.43
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (20 bp):
TTTAGAGCTTGCCATTATGG
Found at i:37469784 original size:22 final size:21
Alignment explanation
Indices: 37469731--37469788 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
37469721 GCAGTTGCAA
**
37469731 GATTTAGAGCTTGCC-ATTAT
1 GATTTAGAGCTTGCCAAGCAT
* *
37469751 GGTTTAGTGCTTGCCAACGCAT
1 GATTTAGAGCTTGCCAA-GCAT
37469773 GATTTAGAGCTTGCCA
1 GATTTAGAGCTTGCCA
37469789 TTATGGTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 13 0.43
21 1 0.03
22 16 0.53
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (21 bp):
GATTTAGAGCTTGCCAAGCAT
Found at i:37473725 original size:43 final size:43
Alignment explanation
Indices: 37473677--37473773 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
37473667 AGGTGCAGGT
* ** * *
37473677 TTCACATGGTCTGCAACACGGACGTGTGTTCCAAAATAGTTTG
1 TTCACACGGTCTGCAACACAAACGTCTGTTCCAAAAGAGTTTG
* *
37473720 TTCACACAGTCTGCAACACAAACTTCTGTTCCAAAAGAGTTTG
1 TTCACACGGTCTGCAACACAAACGTCTGTTCCAAAAGAGTTTG
37473763 -TCACACGGTCT
1 TTCACACGGTCT
37473774 AGGACACAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
42 10 0.22
43 36 0.78
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
TTCACACGGTCTGCAACACAAACGTCTGTTCCAAAAGAGTTTG
Found at i:37476772 original size:23 final size:25
Alignment explanation
Indices: 37476739--37476817 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
37476729 AACACACCAA
*
37476739 TATCACAGCAAAGCTGCCAGTAATAG
1 TATC-CAGCAAAGCTGCCAGTAACAG
* *
37476765 TGTCGCAACAAAGCTGCCAGTAACAG
1 TATC-CAGCAAAGCTGCCAGTAACAG
37476791 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATC-CAGCAAAGCTGCCAGTAACAG
37476817 T
1 T
37476818 CTACTTCCTC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (25 bp):
TATCCAGCAAAGCTGCCAGTAACAG
Found at i:37476780 original size:26 final size:26
Alignment explanation
Indices: 37476747--37476817 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
37476737 AATATCACAG
* *
37476747 CAAAGCTGCCAGTAATAGTGTCGCAA
1 CAAAGCTGCCAGTAACAGTATCGCAA
*
37476773 CAAAGCTGCCAGTAACAGTATCGCAG
1 CAAAGCTGCCAGTAACAGTATCGCAA
37476799 CAAAGCTGCCAGTAACAGT
1 CAAAGCTGCCAGTAACAGT
37476818 CTACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (26 bp):
CAAAGCTGCCAGTAACAGTATCGCAA
Found at i:37477017 original size:27 final size:27
Alignment explanation
Indices: 37476986--37477124 Score: 199
Period size: 27 Copynumber: 5.1 Consensus size: 27
37476976 TATAACAGTT
37476986 ATTTTACCCTATGAGGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGATC
* *
37477013 GTTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGATC
* * *
37477040 ATTTGACCCAATGATGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGATC
37477067 ATTTTACCCTATCG-GGGTATTTCGATC
1 ATTTTACCCTAT-GAGGGTATTTCGATC
* *
37477094 ATTTTACCCTATGGGGGTATGTCGATC
1 ATTTTACCCTATGAGGGTATTTCGATC
37477121 ATTT
1 ATTT
37477125 CTTAACCTCT
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTATGAGGGTATTTCGATC
Found at i:37483627 original size:16 final size:17
Alignment explanation
Indices: 37483595--37483627 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37483585 TCAAAGTCTC
*
37483595 CCTACAATTTCCAGTTT
1 CCTACAATCTCCAGTTT
37483612 CCTACAATCT-CAGTTT
1 CCTACAATCTCCAGTTT
37483628 ACTCTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.30, G:0.06, T:0.39
Consensus pattern (17 bp):
CCTACAATCTCCAGTTT
Found at i:37484633 original size:26 final size:26
Alignment explanation
Indices: 37484594--37484699 Score: 104
Period size: 26 Copynumber: 4.1 Consensus size: 26
37484584 ACACACCAAC
* * *
37484594 ATCGCAGCAAAGCTGTCACTAATAGT
1 ATCGCAGCAGAGCTGCCACTAACAGT
* *
37484620 GTCGCAGCAGAGCTGCCAGTAACAGT
1 ATCGCAGCAGAGCTGCCACTAACAGT
* *
37484646 ATCGCAGCAGAGCTGCCAGTAACAAT
1 ATCGCAGCAGAGCTGCCACTAACAGT
* * * * *
37484672 ATTGCAGCAAAGCTACCAATAATAGT
1 ATCGCAGCAGAGCTGCCACTAACAGT
37484698 AT
1 AT
37484700 ACTTCCTCAA
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (26 bp):
ATCGCAGCAGAGCTGCCACTAACAGT
Found at i:37484903 original size:27 final size:27
Alignment explanation
Indices: 37484870--37485011 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
37484860 GGGTATAACA
*
37484870 GTCATTTTACCCTATGAGAGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * * *
37484897 GTTATTTTATCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
37484924 GTCATTTTACCCTATGATGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
37484951 ATTATTTTACCCTAT-AGTGGTATTTCA
1 GTCATTTTACCCTATGAG-GGTATTTCG
*
37484978 GTCATTTTACCCTAT-AGGGGTATTTCA
1 GTCATTTTACCCTATGA-GGGTATTTCG
37485005 GTCATTT
1 GTCATTT
37485012 CTTGACCTCT
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 95 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.18, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:37484946 original size:81 final size:81
Alignment explanation
Indices: 37484861--37485011 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
37484851 ATCTCCTATG
* * * * **
37484861 GGTATAAC-AGTCATTTTACCCTATGAG-AGTATTTCGGTTATTTTATCCTATGGGGGTATTTTG
1 GGTATAACGA-TCATTTTACCCTAT-AGTAGTATTTCAGTCATTTTACCCTATAGGGGTATTTCA
37484924 GTCATTTTACCCTATGAT
64 GTCATTTTACCCTATGAT
** * *
37484942 GGTATTTCGATTATTTTACCCTATAGTGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCAGT
1 GGTATAACGATCATTTTACCCTATAGTAGTATTTCAGTCATTTTACCCTATAGGGGTATTTCAGT
37485007 CATTT
66 CATTT
37485012 CTTGACCTCT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
80 2 0.03
81 55 0.95
82 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (81 bp):
GGTATAACGATCATTTTACCCTATAGTAGTATTTCAGTCATTTTACCCTATAGGGGTATTTCAGT
CATTTTACCCTATGAT
Found at i:37485000 original size:54 final size:54
Alignment explanation
Indices: 37484868--37485003 Score: 184
Period size: 54 Copynumber: 2.5 Consensus size: 54
37484858 ATGGGTATAA
* * * *
37484868 CAGTCATTTTACCCTATGAGAGTATTTCGGTTATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTTCGATTATTTTACCCTATAGGGGTATTT
** * *
37484922 TGGTCATTTTACCCTATGATGGTATTTCGATTATTTTACCCTATAGTGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTTCGATTATTTTACCCTATAGGGGTATTT
37484976 CAGTCATTTTACCCTAT-AGGGGTATTTC
1 CAGTCATTTTACCCTATGA-GGGTATTTC
37485004 AGTCATTTCT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 69 0.99
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.45
Consensus pattern (54 bp):
CAGTCATTTTACCCTATGAGGGTATTTCGATTATTTTACCCTATAGGGGTATTT
Found at i:37488890 original size:20 final size:20
Alignment explanation
Indices: 37488865--37488914 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
37488855 TGAACCCTTC
37488865 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
37488885 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTG
*
37488905 TATTTACTTA
1 CATTTACTTA
37488915 TTTTAGCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.04, T:0.52
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTG
Found at i:37494302 original size:23 final size:23
Alignment explanation
Indices: 37494253--37494302 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
37494243 TGCTTATTAT
* *
37494253 TTATCCACTTCGGCGGTGCTCAG
1 TTATCCACTTCGGCAGTGCTCAA
*
37494276 TTATCCACTTCGGCAGTGTTCAA
1 TTATCCACTTCGGCAGTGCTCAA
37494299 TTAT
1 TTAT
37494303 ATGCTTTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (23 bp):
TTATCCACTTCGGCAGTGCTCAA
Found at i:37496273 original size:20 final size:20
Alignment explanation
Indices: 37496208--37496322 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
37496198 AATACCAAGG
* *
37496208 GTAAATTATCGATACTTTGA
1 GTAAAGTATAGATACTTTGA
* * *
37496228 ATAAAGTATAAATAAC-TAGA
1 GTAAAGTATAGAT-ACTTTGA
** *
37496248 CCAAAGTATAGATACTTTTA
1 GTAAAGTATAGATACTTTGA
37496268 GTAAAGTAT-GAATACTTTGA
1 GTAAAGTATAG-ATACTTTGA
*
37496288 -TCGAAGTATAGATACTTTGA
1 GT-AAAGTATAGATACTTTGA
* *
37496308 GTAAACTATCGATAC
1 GTAAAGTATAGATAC
37496323 CTTGGATATT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
19 4 0.06
20 64 0.89
21 4 0.06
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (20 bp):
GTAAAGTATAGATACTTTGA
Found at i:37496273 original size:40 final size:40
Alignment explanation
Indices: 37496218--37496312 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
37496208 GTAAATTATC
*
37496218 GATACTTTGAATAAAGTATAAATAAC-TAGACCAAAGTATA
1 GATACTTTGAGTAAAGTATAAAT-ACTTAGACCAAAGTATA
* * * * *
37496258 GATACTTTTAGTAAAGTATGAATACTTTGATCGAAGTATA
1 GATACTTTGAGTAAAGTATAAATACTTAGACCAAAGTATA
37496298 GATACTTTGAGTAAA
1 GATACTTTGAGTAAA
37496313 CTATCGATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.04
40 45 0.96
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (40 bp):
GATACTTTGAGTAAAGTATAAATACTTAGACCAAAGTATA
Found at i:37498639 original size:32 final size:33
Alignment explanation
Indices: 37498603--37498668 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 33
37498593 TAGCACAATC
*
37498603 TATTTTATCTATT-AAGG-CT-TAATATTTTGATT
1 TATTTTAT-TATTCAAGGACTGTAATACTTT-ATT
37498635 TATTTTATTATTCAAGGACTGTAATACTTTATT
1 TATTTTATTATTCAAGGACTGTAATACTTTATT
37498668 T
1 T
37498669 TTAAACTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.13
32 12 0.40
33 6 0.20
34 8 0.27
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.55
Consensus pattern (33 bp):
TATTTTATTATTCAAGGACTGTAATACTTTATT
Found at i:37502067 original size:168 final size:172
Alignment explanation
Indices: 37501788--37502128 Score: 627
Period size: 168 Copynumber: 2.0 Consensus size: 172
37501778 TAAATCCATA
37501788 TAGAACTGCACTTCTTTTATTTATTTTTTTTAGAATAAGGTGTTTCAACCTTACTACACTCCTTC
1 TAGAACTGCACTTCTTTTATTTATTTTTTTTAGAATAAGGTGTTTCAACCTTACTACACTCCTTC
*
37501853 TATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGT-A-A-TCGAATT
66 TATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAACATTCAAATT
*
37501915 CAACATAGTGAATTATCTTGTCCTCTACCCGTGGTTTTTTTT
131 CAACATAGTGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
37501957 TAGAACTGCACTTCTTTTATTTA-TTTTTTTAGAATAAGGTGTTTCAACCTTACTACACTCCTTC
1 TAGAACTGCACTTCTTTTATTTATTTTTTTTAGAATAAGGTGTTTCAACCTTACTACACTCCTTC
37502021 TATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCATTCAAAT
66 TATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAA-CATTCAAAT
37502086 TCAACATAGTGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
130 TCAACATAGTGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
37502129 CCTGAAAGGG
Statistics
Matches: 166, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
168 94 0.57
169 24 0.14
171 1 0.01
172 47 0.28
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (172 bp):
TAGAACTGCACTTCTTTTATTTATTTTTTTTAGAATAAGGTGTTTCAACCTTACTACACTCCTTC
TATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAACATTCAAATT
CAACATAGTGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
Found at i:37505602 original size:3 final size:3
Alignment explanation
Indices: 37505594--37505618 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37505584 CCAAGGTCTC
37505594 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
37505619 TGAGATGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:37506199 original size:31 final size:31
Alignment explanation
Indices: 37506161--37506221 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
37506151 ATTAATTTTT
*
37506161 AACTATTC-AAAAATTTTCATTTAAGTCATTA
1 AACTATTCAAAAAATTTT-ATTTAAATCATTA
37506192 AACTATTCAAAAAATTTTATTTAAATCATT
1 AACTATTCAAAAAATTTTATTTAAATCATT
37506222 GGGTTGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 19 0.68
32 9 0.32
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (31 bp):
AACTATTCAAAAAATTTTATTTAAATCATTA
Found at i:37507793 original size:33 final size:33
Alignment explanation
Indices: 37507738--37507816 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
37507728 ATTGAGGCTT
* *
37507738 AAACTAATTCAATGTCATCCCTA-CGTCATAGCG
1 AAACAAATTCAATGTCACCCCTACCGT-ATAGCG
* *
37507771 AAACCAATACAATGTCACCCCTACCGTATAGCG
1 AAACAAATTCAATGTCACCCCTACCGTATAGCG
37507804 AAACAAATTCAAT
1 AAACAAATTCAAT
37507817 CTCATCTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
33 37 0.93
34 3 0.08
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.23
Consensus pattern (33 bp):
AAACAAATTCAATGTCACCCCTACCGTATAGCG
Found at i:37512668 original size:15 final size:15
Alignment explanation
Indices: 37512650--37512681 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37512640 ATGATATATC
37512650 AAATGTTGATAAAGT
1 AAATGTTGATAAAGT
37512665 AAATGTTGATAAAGT
1 AAATGTTGATAAAGT
37512680 AA
1 AA
37512682 TGTAGATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (15 bp):
AAATGTTGATAAAGT
Found at i:37514680 original size:16 final size:17
Alignment explanation
Indices: 37514637--37514683 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
37514627 ATATATTACA
37514637 ATAATTAATATATAATGT
1 ATAATT-ATATATAATGT
37514655 ACTACTATTATATATAAT-T
1 A-TA--ATTATATATAATGT
37514674 ATAATTATAT
1 ATAATTATAT
37514684 TGTAGATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 7 0.27
18 3 0.12
19 4 0.15
20 9 0.35
21 3 0.12
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (17 bp):
ATAATTATATATAATGT
Found at i:37516541 original size:11 final size:11
Alignment explanation
Indices: 37516527--37516601 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
37516517 GATAATCACT
37516527 TTAATATTAAA
1 TTAATATTAAA
37516538 TTAATA--AAA
1 TTAATATTAAA
*
37516547 -TACTATTAAGA
1 TTAATATTAA-A
37516558 -TAATATTAAA
1 TTAATATTAAA
37516568 TTTAAT-TTAATA
1 -TTAATATTAA-A
37516580 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
37516593 ATAATATTA
1 TTAATATTA
37516602 TTTTTGAAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 3 0.06
11 26 0.50
12 9 0.17
13 3 0.06
14 4 0.08
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:37516555 original size:25 final size:25
Alignment explanation
Indices: 37516501--37516566 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
37516491 AAACATTAAA
*
37516501 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
37516526 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
**
37516550 TATTAAGATAATATTAA
1 T-TTAATTTAATATTAA
37516567 ATTTAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
24 6 0.18
25 24 0.71
26 4 0.12
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:37516588 original size:36 final size:37
Alignment explanation
Indices: 37516490--37516601 Score: 108
Period size: 36 Copynumber: 3.1 Consensus size: 37
37516480 ATCTTCAAGA
*
37516490 TAAACATTAAATTTAAT-TT-AA-TATTAAGATAATCACT
1 TAAATATT-AATTTAATATTAAACTATTAAGATAAT-A-T
* * *
37516527 TTAATATTAAATTAATA-AAATACTATTAAGATAATAT
1 TAAATATTAATTTAATATTAA-ACTATTAAGATAATAT
*
37516564 TAAAT-TTAATTTAATATTAAACTATTAAAATAATAT
1 TAAATATTAATTTAATATTAAACTATTAAGATAATAT
37516600 TA
1 TA
37516602 TTTTTGAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
36 34 0.55
37 14 0.23
38 2 0.03
39 12 0.19
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (37 bp):
TAAATATTAATTTAATATTAAACTATTAAGATAATAT
Found at i:37523620 original size:12 final size:12
Alignment explanation
Indices: 37523599--37523760 Score: 52
Period size: 12 Copynumber: 13.2 Consensus size: 12
37523589 TTTATCAAGA
37523599 TAAATATAATAT
1 TAAATATAATAT
*
37523611 TAAATTTAATAT
1 TAAATATAATAT
*
37523623 TAAATCT--TAT
1 TAAATATAATAT
* *
37523633 TAAAAAAATAGAGATT
1 T--AAATATA-ATA-T
* *
37523649 TTAATTTAATAT
1 TAAATATAATAT
*
37523661 T-AAGATAATCAGT
1 TAAATATAAT-A-T
*
37523674 TTAATATTATATTAT
1 TAAATA-TA-AT-AT
*
37523689 TAAA-ATACTAT
1 TAAATATAATAT
37523700 TAAGATA-AATAT
1 TAA-ATATAATAT
*
37523712 TAAATTTAAT-T
1 TAAATATAATAT
*
37523723 TAAATTTAAT-T
1 TAAATATAATAT
*
37523734 TAATATTTAAATAT
1 TAA-ATAT-AATAT
37523748 TAAA-ATAATAT
1 TAAATATAATAT
37523759 TA
1 TA
37523761 TTTTTGGAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 35
0.68 0.11 0.21
Matches are distributed among these distances:
10 4 0.03
11 35 0.30
12 41 0.36
13 11 0.10
14 12 0.10
15 7 0.06
16 5 0.04
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (12 bp):
TAAATATAATAT
Found at i:37523642 original size:38 final size:39
Alignment explanation
Indices: 37523568--37523663 Score: 103
Period size: 38 Copynumber: 2.5 Consensus size: 39
37523558 TTAATCACTT
*
37523568 TAATATTAAA-TTAATA-TAATATTTATCAAGATAAATA
1 TAATATTAAATTTAATATTAATATTTATCAAGAAAAATA
*
37523605 TAATATTAAATTTAATATTAA-ATCTTATTAA-AAAAATA
1 TAATATTAAATTTAATATTAATAT-TTATCAAGAAAAATA
* *
37523643 GAGAT-TTTAATTTAATATTAA
1 TA-ATATTAAATTTAATATTAA
37523664 GATAATCAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
37 10 0.20
38 30 0.59
39 11 0.22
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (39 bp):
TAATATTAAATTTAATATTAATATTTATCAAGAAAAATA
Found at i:37523727 original size:11 final size:11
Alignment explanation
Indices: 37523711--37523743 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
37523701 AAGATAAATA
37523711 TTAAATTTAAT
1 TTAAATTTAAT
37523722 TTAAATTTAAT
1 TTAAATTTAAT
37523733 TTAATATTTAA
1 TTAA-ATTTAA
37523744 ATATTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:37523759 original size:11 final size:12
Alignment explanation
Indices: 37523681--37523760 Score: 53
Period size: 11 Copynumber: 6.8 Consensus size: 12
37523671 AGTTTAATAT
*
37523681 TATATTATTAAA
1 TATAATATTAAA
*
37523693 -ATACTATTAAGA
1 TATAATATTAA-A
37523705 TA-AATATTAAA
1 TATAATATTAAA
*
37523716 TTTAAT-TTAAA
1 TATAATATTAAA
*
37523727 TTTAAT-TTAATA
1 TATAATATTAA-A
*
37523739 TTTAAATATTAAA
1 TAT-AATATTAAA
37523752 -ATAATATTA
1 TATAATATTA
37523761 TTTTTGGAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
11 33 0.57
12 16 0.28
13 5 0.09
14 4 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (12 bp):
TATAATATTAAA
Found at i:37525366 original size:12 final size:12
Alignment explanation
Indices: 37525349--37525373 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37525339 AGCTAACTAT
37525349 AGTTGTACTTTG
1 AGTTGTACTTTG
37525361 AGTTGTACTTTG
1 AGTTGTACTTTG
37525373 A
1 A
37525374 CTTAGCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.24, T:0.48
Consensus pattern (12 bp):
AGTTGTACTTTG
Found at i:37528284 original size:40 final size:40
Alignment explanation
Indices: 37528101--37528270 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
37528091 TCCTCGTTCA
* * * * *
37528101 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37528140 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37528180 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37528220 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37528260 AAGGCCTTCGG
1 AATGCCTTCGG
37528271 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37536171 original size:40 final size:40
Alignment explanation
Indices: 37535988--37536157 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
37535978 TCCTCGTTCA
* * * * *
37535988 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37536027 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37536067 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37536107 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
37536147 AAGGCCTTCGG
1 AATGCCTTCGG
37536158 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37547883 original size:40 final size:40
Alignment explanation
Indices: 37547839--37548062 Score: 217
Period size: 40 Copynumber: 5.6 Consensus size: 40
37547829 GCTACTCGTT
* *
37547839 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
37547879 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
37547919 CCAATGCCTTCGGGACTTAACCCGGATT-CAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* ** *
37547959 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
37547998 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
37548039 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
37548063 ACATCATTCG
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 3 0.02
39 27 0.17
40 111 0.71
41 15 0.10
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:37547943 original size:80 final size:80
Alignment explanation
Indices: 37547839--37548063 Score: 251
Period size: 80 Copynumber: 2.8 Consensus size: 80
37547829 GCTACTCGTT
* *
37547839 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGG
*
37547904 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * * *
37547919 CCAATGCCTTCGGGACTTAACCCGGATT-CAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCG
* *
37547982 AAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* ** * * *
37547998 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCC
37548061 GGA
64 GGA
37548064 CATCATTCGA
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
78 4 0.03
79 52 0.44
80 60 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:37548047 original size:79 final size:79
Alignment explanation
Indices: 37547839--37548061 Score: 204
Period size: 79 Copynumber: 2.8 Consensus size: 79
37547829 GCTACTCGTT
* * * * *
37547839 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCA-CACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAACCCGAATT-CAGTAACT-AGCACAAA-GCCTTCGGGACTTAGCCC
* *
37547902 GGATTTAGTAACTCGCA
63 GAAATTAGTAACTCGCA
* * * *
37547919 CCAATGCCTTCGGGACTTAACCCGGATTCAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGACTTAACCCGAATTCAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGA
*
37547983 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * *
37547998 CAAATGCCTTC-GGATCTTAGTCCGAATAT-GGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAACCCGAAT-TCAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCC
37548061 G
63 G
37548062 GACATCATTC
Statistics
Matches: 117, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
78 3 0.03
79 56 0.48
80 53 0.45
81 5 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGAATTCAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGAA
ATTAGTAACTCGCA
Done.