Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 116 of 208
Found at i:37904134 original size:101 final size:100
Alignment explanation
Indices: 37903992--37904221 Score: 370
Period size: 101 Copynumber: 2.3 Consensus size: 100
37903982 GAATTGACGA
* *
37903992 ATAAGACCATAACTGGGTTATGACACTATGAATGTAAGACCATGGTTGGACCATGACAGTGTTTA
1 ATAAGACCATAACT-GGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAGTGTTTA
*
37904057 TATGTAAGACCATAATTGGGCTATGGCATTCTGATG
65 TATGTAAGACCATAACTGGGCTATGGCATTCTGATG
*
37904093 ATAAGACCAGAACTAGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAGTGTTTA
1 ATAAGACCATAACT-GGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAGTGTTTA
* *
37904158 TATGTAAGACCATAGCTGGGCTATGGCATTTTGATG
65 TATGTAAGACCATAACTGGGCTATGGCATTCTGATG
*
37904194 ATAAGGCCATAACTGTGTTATGGCACTA
1 ATAAGACCATAACTG-GTTATGGCACTA
37904222 CGAATATAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
100 1 0.01
101 118 0.99
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (100 bp):
ATAAGACCATAACTGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAGTGTTTAT
ATGTAAGACCATAACTGGGCTATGGCATTCTGATG
Found at i:37906879 original size:4 final size:4
Alignment explanation
Indices: 37906870--37906896 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
37906860 AAACTAAGTA
37906870 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
37906897 AATAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:37913393 original size:4 final size:4
Alignment explanation
Indices: 37913384--37913410 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
37913374 AAACTAAGTA
37913384 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
37913411 AATAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:37915424 original size:21 final size:20
Alignment explanation
Indices: 37915377--37915417 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37915367 TAATGCATAC
37915377 TCATTTTTCTACATAATGTT
1 TCATTTTTCTACATAATGTT
37915397 TCATTTTTCTACATAATGTT
1 TCATTTTTCTACATAATGTT
37915417 T
1 T
37915418 TGGTTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (20 bp):
TCATTTTTCTACATAATGTT
Found at i:37930566 original size:16 final size:18
Alignment explanation
Indices: 37930535--37930568 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
37930525 AGGATTTCTC
37930535 CTTGAATTTAATAACTTT
1 CTTGAATTTAATAACTTT
37930553 CTTGAA-TT-ATAACTTT
1 CTTGAATTTAATAACTTT
37930569 ATAAGTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (18 bp):
CTTGAATTTAATAACTTT
Found at i:37931185 original size:22 final size:22
Alignment explanation
Indices: 37931160--37931205 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
37931150 TATTTTATTC
37931160 TTTTGGTTTGGTAACTCAACAA
1 TTTTGGTTTGGTAACTCAACAA
37931182 TTTTGGTTTGGTAACTCAACAA
1 TTTTGGTTTGGTAACTCAACAA
37931204 TT
1 TT
37931206 CAACTCTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (22 bp):
TTTTGGTTTGGTAACTCAACAA
Found at i:37934611 original size:27 final size:25
Alignment explanation
Indices: 37934559--37934661 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 25
37934549 TCAATAATTC
37934559 AAAAATATGTTGAAAATTTAAAAATAA
1 AAAAATAT-TT-AAAATTTAAAAATAA
*
37934586 AAAAATATTTAAAATTTTAGAGAATACA
1 AAAAATATTTAAAA-TTTA-AAAATA-A
* * *
37934614 AAAAAAATTGAAAATATAAAAAATAA
1 AAAAATATTTAAAAT-TTAAAAATAA
* *
37934640 AAAAATAATTTGAATTTTAAAA
1 AAAAAT-ATTTAAAATTTAAAA
37934662 GTTATAAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
25 4 0.07
26 17 0.28
27 25 0.41
28 15 0.25
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (25 bp):
AAAAATATTTAAAATTTAAAAATAA
Found at i:37934679 original size:9 final size:9
Alignment explanation
Indices: 37934667--37934698 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
37934657 TAAAAGTTAT
37934667 AAAAATTAA
1 AAAAATTAA
37934676 AAAAATTAA
1 AAAAATTAA
37934685 AAAAATTAA
1 AAAAATTAA
37934694 AAAAA
1 AAAAA
37934699 AATTATCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATTAA
Found at i:37935473 original size:30 final size:30
Alignment explanation
Indices: 37935439--37935498 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
37935429 TCTCCTTCAA
*
37935439 GCTCTCACCATTCCTGTCACCACTATAGCT
1 GCTCTCAACATTCCTGTCACCACTATAGCT
** *
37935469 GCTCTCAACATTGTTGTGACCACTATAGCT
1 GCTCTCAACATTCCTGTCACCACTATAGCT
37935499 ATTTAGTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (30 bp):
GCTCTCAACATTCCTGTCACCACTATAGCT
Found at i:37937992 original size:21 final size:21
Alignment explanation
Indices: 37937966--37938006 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37937956 ATCTGCTCAA
* *
37937966 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
37937987 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
37938007 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:37958765 original size:13 final size:13
Alignment explanation
Indices: 37958747--37958775 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37958737 ACAAAATTGG
37958747 AAAGATGATAAAT
1 AAAGATGATAAAT
37958760 AAAGATGATAAAT
1 AAAGATGATAAAT
37958773 AAA
1 AAA
37958776 AAATAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:37959794 original size:24 final size:24
Alignment explanation
Indices: 37959766--37959819 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
37959756 TTCCTGATAT
*
37959766 ATGGCTATTCGGAGCTTCCCGTTA
1 ATGGCTATTCGGAGCTACCCGTTA
* * *
37959790 ATGGCTCTTTGTAGCTACCCGTTA
1 ATGGCTATTCGGAGCTACCCGTTA
*
37959814 TTGGCT
1 ATGGCT
37959820 CGTATGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (24 bp):
ATGGCTATTCGGAGCTACCCGTTA
Found at i:37959829 original size:24 final size:23
Alignment explanation
Indices: 37959777--37959829 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
37959767 TGGCTATTCG
* *
37959777 GAGCTTCCCGTTAATGGCTCTTT
1 GAGCTACCCGTTAATGGCTCTAT
*
37959800 GTAGCTACCCGTTATTGGCTCGTAT
1 G-AGCTACCCGTTAATGGCTC-TAT
37959825 GAGCT
1 GAGCT
37959830 TCACAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 21 0.84
25 3 0.12
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.36
Consensus pattern (23 bp):
GAGCTACCCGTTAATGGCTCTAT
Found at i:37959894 original size:25 final size:25
Alignment explanation
Indices: 37959850--37959920 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
37959840 GGCACTTATG
** *
37959850 AGCTTCCCGTTATACAGCTCGGATA
1 AGCTTCCCGTTATATGGCTCGCATA
*
37959875 AGCTTCCCGTTATATGGCTCACATA
1 AGCTTCCCGTTATATGGCTCGCATA
* *
37959900 AACTTCCTGTTATATGGCTCG
1 AGCTTCCCGTTATATGGCTCG
37959921 AGAGAGGGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (25 bp):
AGCTTCCCGTTATATGGCTCGCATA
Found at i:37968077 original size:105 final size:103
Alignment explanation
Indices: 37967896--37968163 Score: 437
Period size: 105 Copynumber: 2.6 Consensus size: 103
37967886 TAACCGTTGT
* * *
37967896 CGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 CGGTGGAT-ACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
37967961 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
37968000 CGGTGGATATCGCACATAGCACCACCAATGAAATCGGGGAATCAACACTTAGCAACCCCTCGGGG
1 CGGTGGATA-CGCACATAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
37968065 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
64 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
37968105 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAT-ACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
37968164 TTTATATACA
Statistics
Matches: 153, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
104 52 0.34
105 100 0.65
106 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.17
Consensus pattern (103 bp):
CGGTGGATACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:37980360 original size:13 final size:13
Alignment explanation
Indices: 37980342--37980369 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37980332 TTTCTTTATA
37980342 TTTTTTTTAAATT
1 TTTTTTTTAAATT
37980355 TTTTTTTTAAATT
1 TTTTTTTTAAATT
37980368 TT
1 TT
37980370 AAAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTTAAATT
Found at i:37980422 original size:18 final size:21
Alignment explanation
Indices: 37980391--37980433 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 21
37980381 AAAAATATAA
*
37980391 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTAAAAATT
37980411 ATTTTG-AA-TTTTAAAAATT
1 ATTTTGAAATTTTTAAAAATT
37980430 ATTT
1 ATTT
37980434 CGATATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 8 0.38
19 7 0.33
20 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTTGAAATTTTTAAAAATT
Found at i:37981511 original size:18 final size:19
Alignment explanation
Indices: 37981490--37981525 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
37981480 TTGTTTAAGA
*
37981490 AATTA-TTTGTATTAAATG
1 AATTATTTTATATTAAATG
37981508 AATTATTTTATATTAAAT
1 AATTATTTTATATTAAAT
37981526 TTATTTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
AATTATTTTATATTAAATG
Found at i:37982959 original size:10 final size:10
Alignment explanation
Indices: 37982944--37982968 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37982934 CTTTGTTATT
37982944 ACCTATATAA
1 ACCTATATAA
37982954 ACCTATATAA
1 ACCTATATAA
37982964 ACCTA
1 ACCTA
37982969 CTTGTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (10 bp):
ACCTATATAA
Found at i:37988046 original size:21 final size:22
Alignment explanation
Indices: 37988006--37988052 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
37987996 CTCTGCTCAA
*
37988006 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
37988027 ACTCCACCTGCTGTGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
37988049 ACTC
1 ACTC
37988053 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:37993121 original size:31 final size:28
Alignment explanation
Indices: 37993081--37993193 Score: 82
Period size: 30 Copynumber: 3.8 Consensus size: 28
37993071 ATAAATAGCA
*
37993081 AATTTATACATGAACTTTGGTCTAAGGTGC
1 AATTTATACATGAACTTTGAT-T-AGGTGC
** *
37993111 AATTTGATACAAAAACTTTGATTTGGTGC
1 AATTT-ATACATGAACTTTGATTAGGTGC
** *
37993140 AATTATATACATGAAACTTAAATTAGGTTC
1 AATT-TATACATG-AACTTTGATTAGGTGC
* *
37993170 ATATATATATATGGAACTTTGATT
1 A-ATTTATACAT-GAACTTTGATT
37993194 TTGATTCAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
29 14 0.22
30 34 0.53
31 16 0.25
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (28 bp):
AATTTATACATGAACTTTGATTAGGTGC
Found at i:37999016 original size:38 final size:38
Alignment explanation
Indices: 37998965--37999056 Score: 123
Period size: 38 Copynumber: 2.4 Consensus size: 38
37998955 ACCACTTTGA
* *
37998965 CCACCCTGCACACCACATATGAGCTAT-ATCAAGCCCAT
1 CCACCCTGCACACCACATATGAACCATGAT-AAGCCCAT
* *
37999003 CCACCCTGCACACCGCATATGAACCATGATAGGCCCAT
1 CCACCCTGCACACCACATATGAACCATGATAAGCCCAT
*
37999041 CCACCCTACACACCAC
1 CCACCCTGCACACCAC
37999057 GTAACATGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 45 0.96
39 2 0.04
ACGTcount: A:0.30, C:0.43, G:0.11, T:0.15
Consensus pattern (38 bp):
CCACCCTGCACACCACATATGAACCATGATAAGCCCAT
Found at i:38000883 original size:38 final size:37
Alignment explanation
Indices: 38000811--38000892 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 37
38000801 AATTAATTAA
38000811 TTTTTAAAAATTTAAAAATATTTTTTAATGTTTATAC
1 TTTTTAAAAATTTAAAAATATTTTTTAATGTTTATAC
* * *
38000848 TTTTTAAATAATTT-AATAT-TTTTTTTATGTTTTTA-
1 TTTTTAAA-AATTTAAAAATATTTTTTAATGTTTATAC
*
38000883 TATTTAAAAA
1 TTTTTAAAAA
38000893 ACTAATTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 2 0.05
35 7 0.17
36 14 0.35
37 12 0.30
38 5 0.12
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (37 bp):
TTTTTAAAAATTTAAAAATATTTTTTAATGTTTATAC
Found at i:38000959 original size:14 final size:14
Alignment explanation
Indices: 38000940--38000967 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38000930 CACGTCAGCA
38000940 AAATTAACCAATGT
1 AAATTAACCAATGT
38000954 AAATTAACCAATGT
1 AAATTAACCAATGT
38000968 TAATATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AAATTAACCAATGT
Found at i:38006955 original size:19 final size:17
Alignment explanation
Indices: 38006920--38006959 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 17
38006910 TATTTAGGTA
38006920 AAAATTTGGAGAATTTC
1 AAAATTTGGAGAATTTC
38006937 AAAATTTGTGAGTAATTTC
1 AAAATTTG-GAG-AATTTC
38006956 AAAA
1 AAAA
38006960 GGGATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.38
18 3 0.14
19 10 0.48
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (17 bp):
AAAATTTGGAGAATTTC
Found at i:38010793 original size:63 final size:61
Alignment explanation
Indices: 38010668--38010925 Score: 243
Period size: 63 Copynumber: 4.1 Consensus size: 61
38010658 TGTGTTAGGT
* ** * * * *
38010668 CGTGTAATTCACTGTTTTGGAATTAGAGGCACATAGCCTAAAGACAC-AGATGCATGTTCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGATG--TGTCCAAGC
* * * *
38010731 CGTGTAACTAACTGTTTTAGAATTAAAGGCACATGGGCTAGAGACTCGGGAGTGTGTCCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGA-TGTGTCCAAGC
* * * * *
38010794 CGTCTAAC-ACTGTTTTGGAATTAGAGACGCACGAGCCAAAGACAT-GGGCATGTGTCCAAGC
1 CGTGTAACTACTGTTTTGGAATTAGAGGCACACGGGCTAAAGAC-TCGGG-ATGTGTCCAAGC
* **
38010855 CGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACTAGATGTGTCCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGATGTGTCCAAGC
*
38010917 TGTGTAACT
1 CGTGTAACT
38010926 CACCAATTTG
Statistics
Matches: 160, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
61 48 0.30
62 22 0.14
63 86 0.54
64 2 0.01
65 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (61 bp):
CGTGTAACTACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGATGTGTCCAAGC
Found at i:38016588 original size:43 final size:42
Alignment explanation
Indices: 38016508--38016630 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
38016498 TGATAACATG
*
38016508 TAAGACCATGT-TTGGAACATTGGCATTGTATTGTGATTACGTA
1 TAAGACCATGTCTTGG-ACATTGGCATCGTA-TGTGATTACGTA
* **
38016551 TAAGACCATGTCTTGGACATTGGCATCGTTATATGATTTTGTA
1 TAAGACCATGTCTTGGACATTGGCATCG-TATGTGATTACGTA
* * *
38016594 TAAGACCCTGTCTAGGACAATGGCATCGATATGTGAT
1 TAAGACCATGTCTTGGACATTGGCATCG-TATGTGAT
38016631 AACATGTAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 63 0.91
44 6 0.09
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TAAGACCATGTCTTGGACATTGGCATCGTATGTGATTACGTA
Found at i:38016641 original size:43 final size:42
Alignment explanation
Indices: 38016497--38016641 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 42
38016487 TTACTGAAAG
* *
38016497 GTGATAACATGTAAGACCATGT-TTGGAACATTGGCATTGTATT
1 GTGATAACATATAAGACCATGTCTTGG-ACATTGGCATCGTA-T
* *
38016540 GTGATTACGTATAAGACCATGTCTTGGACATTGGCATCGTTAT
1 GTGATAACATATAAGACCATGTCTTGGACATTGGCATCG-TAT
* **** * * *
38016583 ATGATTTTGTATAAGACCCTGTCTAGGACAATGGCATCGATAT
1 GTGATAACATATAAGACCATGTCTTGGACATTGGCATCG-TAT
*
38016626 GTGATAACATGTAAGA
1 GTGATAACATATAAGA
38016642 TCGTATCTGG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 77 0.93
44 6 0.07
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
GTGATAACATATAAGACCATGTCTTGGACATTGGCATCGTAT
Found at i:38020076 original size:23 final size:23
Alignment explanation
Indices: 38020028--38020142 Score: 71
Period size: 23 Copynumber: 5.2 Consensus size: 23
38020018 ATTGTTTCCC
* * *
38020028 TTTTCCTTCTTATTTTTT-TACGT
1 TTTTCCTTTTTCTTTTTTCTTC-T
38020051 TTTTCCTTTTTCTTTTTTCTTCT
1 TTTTCCTTTTTCTTTTTTCTTCT
* * * *
38020074 TTTCCCTTCTTCTTCTTTCTTCA
1 TTTTCCTTTTTCTTTTTTCTTCT
* **
38020097 ATACCGCTTTTTC-TTTTTC-TCT
1 TTTTC-CTTTTTCTTTTTTCTTCT
*
38020119 ATTT--TTTTTCTTTTTT-TTCT
1 TTTTCCTTTTTCTTTTTTCTTCT
38020139 TTTT
1 TTTT
38020143 GCTTAACTCT
Statistics
Matches: 73, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
19 6 0.08
20 11 0.15
22 4 0.05
23 44 0.60
24 8 0.11
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTCCTTTTTCTTTTTTCTTCT
Found at i:38020134 original size:8 final size:9
Alignment explanation
Indices: 38020104--38020142 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
38020094 TCAATACCGC
38020104 TTTTTCTTT
1 TTTTTCTTT
* *
38020113 TTCTCTATTT
1 TT-TTTCTTT
38020123 TTTTTCTTT
1 TTTTTCTTT
38020132 TTTTTCTTT
1 TTTTTCTTT
38020141 TT
1 TT
38020143 GCTTAACTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 18 0.72
10 7 0.28
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:38021116 original size:63 final size:62
Alignment explanation
Indices: 38020968--38021186 Score: 237
Period size: 63 Copynumber: 3.7 Consensus size: 62
38020958 GTCATGTGTT
* ** * * *
38020968 AGGCCATGTAACTCATTGTTTTAAAATTAGAGGCACACGAGCTAAAGACACGGTGTGTGTTC
1 AGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGCGTGTGTCC
* * *
38021030 AAGCCGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAGAGACACGGGCGTGTGTCC
1 AGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACAC-GGCGTGTGTCC
*
38021093 AGGCCATGTAACTCACTATTTTGGAATTAGAGGCACACGGG-T-----------GTGTGTCC
1 AGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGCGTGTGTCC
* *
38021143 AGGCCATGTAACTCACTGTTTTTGAATTAGAGGAACACGGGCTA
1 AGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTA
38021187 GAGGCACAAG
Statistics
Matches: 139, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
50 46 0.33
51 1 0.01
62 45 0.32
63 47 0.34
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (62 bp):
AGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGCGTGTGTCC
Found at i:38021131 original size:50 final size:50
Alignment explanation
Indices: 38021077--38021184 Score: 180
Period size: 50 Copynumber: 2.2 Consensus size: 50
38021067 CGGGCTAGAG
*
38021077 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGC
1 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
* * *
38021127 ACACGGGTGTGTGTCCAGGCCATGTAACTCACTGTTTTTGAATTAGAGGA
1 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
38021177 ACACGGGC
1 ACACGGGC
38021185 TAGAGGCACA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (50 bp):
ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
Found at i:38021217 original size:113 final size:112
Alignment explanation
Indices: 38021015--38021235 Score: 307
Period size: 113 Copynumber: 2.0 Consensus size: 112
38021005 CGAGCTAAAG
* * *
38021015 ACACGGTGTGTGTTCAAGCCGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAGAGACA
1 ACACGGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGACA
** * * * *
38021080 CGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGC
66 CAAGCATGTGTCAAAGCCATGTAACTCACTATATTGGAATTAGAGGC
* * *
38021127 ACACGGGTGTGTGTCCAGGCCATGTAACTCACTGTTTTTGAATTAGAGGAACACGGGCTAGAGGC
1 ACAC-GGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGAC
* *
38021192 ACAAGCATGTGTCAAAGTCGTGTAACTCACTATATTGGAATTAG
65 ACAAGCATGTGTCAAAGCCATGTAACTCACTATATTGGAATTAG
38021236 GGATGCACAA
Statistics
Matches: 94, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
112 4 0.04
113 90 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (112 bp):
ACACGGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGACA
CAAGCATGTGTCAAAGCCATGTAACTCACTATATTGGAATTAGAGGC
Found at i:38025129 original size:29 final size:31
Alignment explanation
Indices: 38025097--38025164 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 31
38025087 GATTATTTAT
38025097 ATAAGAGTCAAACCTTT-TA-AAATAGTT-AA
1 ATAAGAGTCAAACCTTTATAGAAATA-TTCAA
* ** *
38025126 ATAATAGTTTAACCTTTATAGAAGTATTCAA
1 ATAAGAGTCAAACCTTTATAGAAATATTCAA
38025157 ATAAGAGT
1 ATAAGAGT
38025165 TTTTCACGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
29 14 0.45
30 4 0.13
31 13 0.42
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.34
Consensus pattern (31 bp):
ATAAGAGTCAAACCTTTATAGAAATATTCAA
Found at i:38028728 original size:38 final size:38
Alignment explanation
Indices: 38028686--38028868 Score: 276
Period size: 38 Copynumber: 4.8 Consensus size: 38
38028676 AATATACATA
**
38028686 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCATTGG
1 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
* * *
38028724 CACAAAGCCTGCTAGACACAGAGCCCGAATATCACCAG
1 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
38028762 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
1 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
* ** *
38028800 CACAAAGCCTACTAGGCGTGGAGCCCAAATATCACCGG
1 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
*
38028838 CACAAAGCCTGCTAGGCATGGAGCCCGAATA
1 CACAAAGCCTGCTAGGCACGGAGCCCGAATA
38028869 ACATTACATT
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 130 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.13
Consensus pattern (38 bp):
CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
Found at i:38030176 original size:3 final size:3
Alignment explanation
Indices: 38030151--38030202 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
38030141 TATATATTAT
* *
38030151 ATA ATT ATA ATA A-A ACA AGTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA
38030196 ATA ATA A
1 ATA ATA A
38030203 AAGAAGAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
2 2 0.05
3 40 0.91
4 2 0.05
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:38030256 original size:22 final size:22
Alignment explanation
Indices: 38030226--38030272 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
38030216 GAATCCAAAC
*
38030226 GAAACAAAAAGAA-AGAAAGAAA
1 GAAA-AAAAAAAAGAGAAAGAAA
*
38030248 GAAAAAAAAAAAGGGAAAGAAA
1 GAAAAAAAAAAAGAGAAAGAAA
38030270 GAA
1 GAA
38030273 GAAGCGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (22 bp):
GAAAAAAAAAAAGAGAAAGAAA
Found at i:38030698 original size:19 final size:20
Alignment explanation
Indices: 38030674--38030714 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
38030664 GAATTTAGGC
38030674 AAATATTAAATAA-AAATTG
1 AAATATTAAATAAGAAATTG
*
38030693 AAATATTCAATAAGAAATTG
1 AAATATTAAATAAGAAATTG
38030713 AA
1 AA
38030715 TTGTGTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
AAATATTAAATAAGAAATTG
Found at i:38031024 original size:47 final size:47
Alignment explanation
Indices: 38030972--38031082 Score: 199
Period size: 47 Copynumber: 2.4 Consensus size: 47
38030962 ATATATATAT
38030972 TATGAATATATTGATTATTTGAATTGAAATGAATATATATGCGCAAA
1 TATGAATATATTGATTATTTGAATTGAAATGAATATATATGCGCAAA
38031019 TATGAATATATTGATTATTTGAATTGAAATGAATATATATGCGCAAA
1 TATGAATATATTGATTATTTGAATTGAAATGAATATATATGCGCAAA
*
38031066 TATG-ATA-ATTGAATATT
1 TATGAATATATTGATTATT
38031083 GGTTGTATTT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
45 9 0.14
46 3 0.05
47 51 0.81
ACGTcount: A:0.42, C:0.04, G:0.14, T:0.40
Consensus pattern (47 bp):
TATGAATATATTGATTATTTGAATTGAAATGAATATATATGCGCAAA
Found at i:38031046 original size:22 final size:22
Alignment explanation
Indices: 38030974--38031046 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
38030964 ATATATATTA
38030974 TGAATATATTGATTATTTGAAT
1 TGAATATATTGATTATTTGAAT
* **
38030996 TGAA-ATGAAT-ATATATGCGCAAAT
1 TGAATAT-ATTGAT-TATTTG--AAT
38031020 ATGAATATATTGATTATTTGAAT
1 -TGAATATATTGATTATTTGAAT
38031043 TGAA
1 TGAA
38031047 ATGAATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
21 4 0.11
22 14 0.37
23 3 0.08
24 3 0.08
25 10 0.26
26 4 0.11
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (22 bp):
TGAATATATTGATTATTTGAAT
Found at i:38031624 original size:20 final size:17
Alignment explanation
Indices: 38031608--38031641 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
38031598 TAAATATGGT
38031608 CTTAAATATTAAAATATG
1 CTTAAA-ATTAAAATATG
*
38031626 CTTATAATTAAAATAT
1 CTTAAAATTAAAATAT
38031642 ACATATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (17 bp):
CTTAAAATTAAAATATG
Found at i:38034096 original size:22 final size:21
Alignment explanation
Indices: 38034052--38034096 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
38034042 CCCTTTAAAT
* *
38034052 CAAAACAAACCAACCTTGGAG
1 CAAAACAAACCAACCATGAAG
*
38034073 CAAAACAAAAGCAACCATGAAG
1 CAAAAC-AAACCAACCATGAAG
38034095 CA
1 CA
38034097 CAAAAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.27, G:0.13, T:0.07
Consensus pattern (21 bp):
CAAAACAAACCAACCATGAAG
Found at i:38035649 original size:15 final size:15
Alignment explanation
Indices: 38035608--38035649 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
38035598 ACAATAACGG
*
38035608 AAGCAATCAAAATAT
1 AAGCAATTAAAATAT
* *
38035623 AA-CATTTCAAATAT
1 AAGCAATTAAAATAT
38035637 AAGCAATTAAAAT
1 AAGCAATTAAAAT
38035650 GTAATTTGAG
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.57, C:0.12, G:0.05, T:0.26
Consensus pattern (15 bp):
AAGCAATTAAAATAT
Found at i:38037264 original size:97 final size:96
Alignment explanation
Indices: 38037084--38037267 Score: 226
Period size: 97 Copynumber: 1.9 Consensus size: 96
38037074 ATAGTTTGTG
* * * *
38037084 GGTCATTGAAGGATTTATCTCCATATCTAAGTTCAAATATAAGTTGGAAACATGAACTTGAAGCA
1 GGTCATTGAAGGATTTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGCA
**
38037149 AAATGAAGGGCTGGAGCAACATGGATATACA
66 AAATGAAGGGCTAAAGCAACATGGATATACA
* * * ** *
38037180 GGTCATTGCAGGGTCTTATCTCCATACCTATGTTCGGATATAAGTCGGAAACAAGTACTTCAAGC
1 GGTCATTGAAGGAT-TTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGC
*
38037245 AAAATGAAGAG-TCAAAGCAACAT
65 AAAATGAAGGGCT-AAAGCAACAT
38037268 AACTTAGCAG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
96 13 0.18
97 60 0.82
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (96 bp):
GGTCATTGAAGGATTTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGCA
AAATGAAGGGCTAAAGCAACATGGATATACA
Found at i:38042790 original size:24 final size:24
Alignment explanation
Indices: 38042761--38042833 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
38042751 AACGACTCGT
*
38042761 CTGGAAGAAACAGTCATGTCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
38042785 CTGGAAGAAGCAGTCATGTAAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
* *
38042809 CTGGAAGAAGCAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
38042833 C
1 C
38042834 AATTACACTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.36, C:0.22, G:0.29, T:0.14
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:38046833 original size:70 final size:70
Alignment explanation
Indices: 38046720--38046861 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
38046710 CGTTAAACAT
38046720 GTTCACATATATGTATATACATACTCATTCTTTCATAATATTTATACTACCATATTTAAGCATAT
1 GTTCACATATATGTATATACATACTCATTCTTTCATAATATTTATACTACCATATTTAAGCATAT
38046785 GTCAA
66 GTCAA
38046790 GTTCACATATATGTATATACATACTCATTCTTTCATAATATTTATACTACCATATTTAAGCATAT
1 GTTCACATATATGTATATACATACTCATTCTTTCATAATATTTATACTACCATATTTAAGCATAT
38046855 GTCAA
66 GTCAA
38046860 GT
1 GT
38046862 CATTTGATTA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (70 bp):
GTTCACATATATGTATATACATACTCATTCTTTCATAATATTTATACTACCATATTTAAGCATAT
GTCAA
Found at i:38061368 original size:20 final size:18
Alignment explanation
Indices: 38061330--38061368 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
38061320 AAGAAAACAT
*
38061330 AAATGTGTATATATCAAA
1 AAATGTGTATATATAAAA
38061348 AAATGTGTAAGTATATAAAA
1 AAATGTGT-A-TATATAAAA
38061368 A
1 A
38061369 TTATATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 1 0.06
20 9 0.50
ACGTcount: A:0.54, C:0.03, G:0.13, T:0.31
Consensus pattern (18 bp):
AAATGTGTATATATAAAA
Found at i:38061514 original size:24 final size:24
Alignment explanation
Indices: 38061464--38061516 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
38061454 AAATGTATAC
*
38061464 ATGTAAAAATATACATATTTTAAT
1 ATGTAAAAATATACATATTATAAT
* *
38061488 ATGTAAAAGTATATATA-TATAAGT
1 ATGTAAAAATATACATATTATAA-T
38061512 ATGTA
1 ATGTA
38061517 TATACATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (24 bp):
ATGTAAAAATATACATATTATAAT
Found at i:38067039 original size:27 final size:27
Alignment explanation
Indices: 38067008--38067067 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
38066998 GTGGAAATTG
38067008 AATATTATGAGCTCATATATGTTCCTT
1 AATATTATGAGCTCATATATGTTCCTT
38067035 AATATTATGAGCTCATATATGTTCCTT
1 AATATTATGAGCTCATATATGTTCCTT
*
38067062 GATATT
1 AATATT
38067068 CATGTGAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (27 bp):
AATATTATGAGCTCATATATGTTCCTT
Found at i:38067695 original size:16 final size:16
Alignment explanation
Indices: 38067666--38067703 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
38067656 TCAATATTTT
* *
38067666 TATAATATATAAATTA
1 TATAAAATAAAAATTA
38067682 TATAAAATAAAAATTA
1 TATAAAATAAAAATTA
38067698 TA-AAAA
1 TATAAAA
38067704 CATTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TATAAAATAAAAATTA
Found at i:38070933 original size:14 final size:14
Alignment explanation
Indices: 38070914--38070942 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38070904 TATAGCTTTG
38070914 ACTTTAAAATGGTT
1 ACTTTAAAATGGTT
38070928 ACTTTAAAATGGTT
1 ACTTTAAAATGGTT
38070942 A
1 A
38070943 TATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (14 bp):
ACTTTAAAATGGTT
Found at i:38072783 original size:47 final size:47
Alignment explanation
Indices: 38072710--38072802 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
38072700 AAACAAGTTA
*
38072710 CATTACAGATATTTACAATCTAATGAACAACTTACGAATATGAGTAG
1 CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTAG
* *
38072757 CATTACAGAGATTTACAATCTGATGAACAACTTATGAATATGAGTA
1 CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTA
38072803 CATCGATATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (47 bp):
CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTAG
Found at i:38077312 original size:35 final size:34
Alignment explanation
Indices: 38077270--38077347 Score: 95
Period size: 35 Copynumber: 2.3 Consensus size: 34
38077260 TTGATGATGA
*
38077270 TATTTTATTAATTTTTTAATTA-ATTAGTTAAATAT
1 TATTTTATTAATATTTTAATTAGA-TA-TTAAATAT
* * *
38077305 TATTTTATTAATATTTTACTTAGATATTTATTAT
1 TATTTTATTAATATTTTAATTAGATATTAAATAT
38077339 TATTTTATT
1 TATTTTATT
38077348 TAAAAATTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 15 0.39
35 22 0.58
36 1 0.03
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (34 bp):
TATTTTATTAATATTTTAATTAGATATTAAATAT
Found at i:38077333 original size:13 final size:11
Alignment explanation
Indices: 38077269--38077347 Score: 61
Period size: 11 Copynumber: 6.9 Consensus size: 11
38077259 GTTGATGATG
38077269 ATATTTTATTA
1 ATATTTTATTA
*
38077280 ATTTTTTAATTA
1 ATATTTT-ATTA
* * *
38077292 ATTAGTTAAATA
1 A-TATTTTATTA
*
38077304 TTATTTTATTA
1 ATATTTTATTA
38077315 ATATTTTACTTA
1 ATATTTTA-TTA
38077327 GATA-TTTATTA
1 -ATATTTTATTA
*
38077338 TTATTTTATT
1 ATATTTTATT
38077348 TAAAAATTGG
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
10 2 0.04
11 29 0.56
12 15 0.29
13 6 0.12
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (11 bp):
ATATTTTATTA
Found at i:38079091 original size:15 final size:15
Alignment explanation
Indices: 38079071--38079117 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
38079061 ACTTCAAACA
38079071 CATTTCGAACCCATT
1 CATTTCGAACCCATT
*
38079086 CATTTC-AA-ACA--
1 CATTTCGAACCCATT
38079097 CATTTCGAACCCATT
1 CATTTCGAACCCATT
38079112 CATTTC
1 CATTTC
38079118 TTCACTTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 6 0.23
12 2 0.08
13 4 0.15
14 2 0.08
15 12 0.46
ACGTcount: A:0.30, C:0.32, G:0.04, T:0.34
Consensus pattern (15 bp):
CATTTCGAACCCATT
Found at i:38079099 original size:26 final size:26
Alignment explanation
Indices: 38079063--38079117 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
38079053 TGCTGCTCAC
38079063 TTCAAACACATTTCGAACCCATTCAT
1 TTCAAACACATTTCGAACCCATTCAT
38079089 TTCAAACACATTTCGAACCCATTCAT
1 TTCAAACACATTTCGAACCCATTCAT
38079115 TTC
1 TTC
38079118 TTCACTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.33
Consensus pattern (26 bp):
TTCAAACACATTTCGAACCCATTCAT
Found at i:38086300 original size:22 final size:19
Alignment explanation
Indices: 38086275--38086316 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
38086265 TGATAATCAT
38086275 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
38086297 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
38086316 T
1 T
38086317 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:38087933 original size:25 final size:27
Alignment explanation
Indices: 38087883--38087941 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
38087873 ATATATATAT
* *
38087883 TATA-ATATTATATCTTAATTATTAAG
1 TATATATATTATATATTAATTAATAAG
38087909 TATATATATTATATATT-A-TAATAAG
1 TATATATATTATATATTAATTAATAAG
*
38087934 TAAATATA
1 TATATATA
38087942 ATAAATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 13 0.45
26 5 0.17
27 11 0.38
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (27 bp):
TATATATATTATATATTAATTAATAAG
Found at i:38088940 original size:41 final size:40
Alignment explanation
Indices: 38088893--38089006 Score: 108
Period size: 37 Copynumber: 2.9 Consensus size: 40
38088883 TTCGACTTCG
*
38088893 AGTCGATAAGACACTAGGTGTCAAATTATTACTTCGGATAT
1 AGTCGATGAGACACTAGGTGTCAAATTATTACTTCGG-TAT
* * * ** *
38088934 ATTCGATGAGGCACTGGGTGT-TGA-T-TTACTTCGGTTT
1 AGTCGATGAGACACTAGGTGTCAAATTATTACTTCGGTAT
* * *
38088971 AGCCAATGAGACATTAGGTGTCAAATTATTACTTCG
1 AGTCGATGAGACACTAGGTGTCAAATTATTACTTCG
38089007 AATTATCCAA
Statistics
Matches: 55, Mismatches: 15, Indels: 7
0.71 0.19 0.09
Matches are distributed among these distances:
37 17 0.31
38 10 0.18
39 2 0.04
40 9 0.16
41 17 0.31
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (40 bp):
AGTCGATGAGACACTAGGTGTCAAATTATTACTTCGGTAT
Found at i:38089017 original size:40 final size:40
Alignment explanation
Indices: 38088901--38089035 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 40
38088891 CGAGTCGATA
* *
38088901 AGACACTAGGTGTCAAATTATTACTTCGGATATATTCGATG
1 AGACACTAGGTGTCAAATTATTACTTCGGAT-TATCCAATG
* * ** * *
38088942 AGGCACTGGGTGT-TGA-T-TTACTTCGGTTTAGCCAATG
1 AGACACTAGGTGTCAAATTATTACTTCGGATTATCCAATG
* *
38088979 AGACATTAGGTGTCAAATTATTACTTCGAATTATCCAATG
1 AGACACTAGGTGTCAAATTATTACTTCGGATTATCCAATG
* * *
38089019 AGGCACTGGGTGCCAAA
1 AGACACTAGGTGTCAAA
38089036 CTGGTGTGTT
Statistics
Matches: 71, Mismatches: 20, Indels: 7
0.72 0.20 0.07
Matches are distributed among these distances:
37 16 0.23
38 11 0.15
39 2 0.03
40 31 0.44
41 11 0.15
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (40 bp):
AGACACTAGGTGTCAAATTATTACTTCGGATTATCCAATG
Found at i:38090722 original size:18 final size:18
Alignment explanation
Indices: 38090699--38090734 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
38090689 AGCAACGAGT
**
38090699 TGAAGAAAGTGAAGATCC
1 TGAAGAAAAAGAAGATCC
38090717 TGAAGAAAAAGAAGATCC
1 TGAAGAAAAAGAAGATCC
38090735 CACAGAGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.25, T:0.14
Consensus pattern (18 bp):
TGAAGAAAAAGAAGATCC
Found at i:38098490 original size:15 final size:16
Alignment explanation
Indices: 38098464--38098498 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
38098454 ATTGTGTATC
38098464 ATATTATTTAATATAA
1 ATATTATTTAATATAA
38098480 ATATT-TTTAATATAA
1 ATATTATTTAATATAA
38098495 ATAT
1 ATAT
38098499 AATCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTATTTAATATAA
Found at i:38099063 original size:25 final size:26
Alignment explanation
Indices: 38099016--38099065 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
38099006 TCACAAACAA
38099016 TAAATCAAACAAACAAACAAAATTTT
1 TAAATCAAACAAACAAACAAAATTTT
* *
38099042 TAAAT-AAACAAACCAACTAAATTT
1 TAAATCAAACAAACAAACAAAATTT
38099066 AAATATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (26 bp):
TAAATCAAACAAACAAACAAAATTTT
Found at i:38101389 original size:241 final size:241
Alignment explanation
Indices: 38100966--38101452 Score: 938
Period size: 241 Copynumber: 2.0 Consensus size: 241
38100956 GGGTTTTAGT
*
38100966 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTGCTCCTC
1 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
38101031 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
66 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
*
38101096 CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTGAGCAT
131 CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
38101161 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
196 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
38101207 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
1 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
38101272 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
66 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
*
38101337 CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCGTACAATCATTACTGATTTAAGCAT
131 CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
*
38101402 GTTAAATGACGATTTTAGGTTCTGGGAGTTTCGTGGTGGCATTTAC
196 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
38101448 ATCGA
1 ATCGA
38101453 AATTGGATCA
Statistics
Matches: 242, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 242 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (241 bp):
ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
Found at i:38104128 original size:20 final size:20
Alignment explanation
Indices: 38104103--38104140 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
38104093 CATAAAATGA
*
38104103 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
38104123 TTTCTGTAAAATGATTTA
1 TTTCTGGAAAATGATTTA
38104141 TTGGAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:38104631 original size:26 final size:26
Alignment explanation
Indices: 38104598--38104655 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
38104588 ATATCAAAAT
* *
38104598 TTATAGAGACCAATTTAAAATCTTGA
1 TTATAGAGACCAATTTAAAAGCTAGA
*
38104624 TTATAGAGACCAATTTAATAGCTAGA
1 TTATAGAGACCAATTTAAAAGCTAGA
38104650 TTATAG
1 TTATAG
38104656 TTTGAGGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAAGCTAGA
Found at i:38106488 original size:56 final size:56
Alignment explanation
Indices: 38106409--38106553 Score: 254
Period size: 56 Copynumber: 2.6 Consensus size: 56
38106399 ACTATAGACA
* *
38106409 AGAAACCAATTCACAAAACTATGGACAAAAAACCAATAACATAAAGGAACTAACCC
1 AGAAACCGATTCACAAAAATATGGACAAAAAACCAATAACATAAAGGAACTAACCC
*
38106465 AGAAACCGATTCACAAAAATATGGACAAGAAACCAATAACATAAAGGAACTAACCC
1 AGAAACCGATTCACAAAAATATGGACAAAAAACCAATAACATAAAGGAACTAACCC
38106521 AGAAACCGATTCACAAAAATATGGACAAGAAAA
1 AGAAACCGATTCACAAAAATATGGACAA-AAAA
38106554 TATACCTTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
56 81 0.96
57 3 0.04
ACGTcount: A:0.55, C:0.21, G:0.12, T:0.12
Consensus pattern (56 bp):
AGAAACCGATTCACAAAAATATGGACAAAAAACCAATAACATAAAGGAACTAACCC
Found at i:38114082 original size:3 final size:3
Alignment explanation
Indices: 38114074--38114116 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
38114064 AGTATAGAGT
38114074 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
38114117 TGCATTCGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:38117481 original size:21 final size:21
Alignment explanation
Indices: 38117457--38117513 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
38117447 CAGCTCAATT
38117457 TGGGAGCAATTGCCATGGATG
1 TGGGAGCAATTGCCATGGATG
38117478 TGGGAGCAATTGCCATGGATG
1 TGGGAGCAATTGCCATGGATG
*
38117499 TGGGAACAATTGCCA
1 TGGGAGCAATTGCCA
38117514 AGTTCAATAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (21 bp):
TGGGAGCAATTGCCATGGATG
Found at i:38132455 original size:14 final size:14
Alignment explanation
Indices: 38132436--38132464 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38132426 CGGCCAACCT
38132436 GGCTGTACGGAGGC
1 GGCTGTACGGAGGC
38132450 GGCTGTACGGAGGC
1 GGCTGTACGGAGGC
38132464 G
1 G
38132465 TGCGTGGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.52, T:0.14
Consensus pattern (14 bp):
GGCTGTACGGAGGC
Found at i:38135755 original size:50 final size:50
Alignment explanation
Indices: 38135687--38135804 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 50
38135677 AAGACACCAG
* * * * *
38135687 TCTTATCGCCTTGACGTTGCAATGGAATAGATTGAAGCCACAACGGCGAA
1 TCTTATCTCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
* * * *
38135737 TCTTA-CTTCCCTGGCGTTGCAGCGGAGTAGATTGAAGCCACAATGGTAAA
1 TCTTATC-TCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
38135787 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
38135805 AAGACTTAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 55 0.96
51 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
Found at i:38135999 original size:100 final size:99
Alignment explanation
Indices: 38135883--38136189 Score: 409
Period size: 100 Copynumber: 3.1 Consensus size: 99
38135873 CAGTGGAACG
* * *
38135883 GATTGAAGCCACAACGGCGAATCTTGCTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTACGAC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-GTGTAGTGGAACAGATTGAAGCTACGAC
38135948 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
65 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
* * * ** *
38135983 GATTGAAGCCACAACGGTGAATCTTACTTCTCTGATCGTGTAGTGGAATAGATTGAAGCTGTGGC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTG-GCGTGTAGTGGAACAGATTGAAGCTACGAC
*
38136048 GGCGGATCTGATTTCCCCGACATTGCAATTAAAAA
65 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
* *
38136083 GATTGAAGCCACAACTGTGAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGAC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC-GTGTAGTGGAACAGATTGAAGCTACGAC
* * * * * *
38136148 GGTGAATATTG-TTTCCTCAACATTGCAGTTAAACA
65 GGCGAAT-CTGATTTCCCCGACATTGCAATTAAAAA
38136183 GATTGAA
1 GATTGAA
38136190 AATGACGAAT
Statistics
Matches: 179, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
99 1 0.01
100 175 0.98
101 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (99 bp):
GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGTGTAGTGGAACAGATTGAAGCTACGACG
GCGAATCTGATTTCCCCGACATTGCAATTAAAAA
Found at i:38136154 original size:50 final size:50
Alignment explanation
Indices: 38135874--38136141 Score: 157
Period size: 50 Copynumber: 5.4 Consensus size: 50
38135864 TTGGCATTAC
* * * *
38135874 AGTGGAACGGATTGAAGCCACAACGGCGAATCTTGCTTCCCTGGCAGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTTCCTGACAGTGT
* * * * * * *
38135924 AGTGGAACAGATTAAAGCTACGACGGCGAATCTGA-TTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTT-CCTGACAGTGT
* ** * *
38135974 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTAC-TTCTCTGATC-GTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTTC-CTGA-CAGTGT
* ***** * * * * *
38136024 AGTGGAATAGATTGAAGCTGTGGCGGCGGATCTGA-TTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTT-CCTGACAGTGT
* ** * * * * *
38136074 AATTAAAAAGATTGAAGCCACAACTGTGAATCTTACTTTCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTTCCTGACAGTGT
38136124 AGTGGAACAGATTGAAGC
1 AGTGGAACAGATTGAAGC
38136142 TACGACGGTG
Statistics
Matches: 150, Mismatches: 60, Indels: 16
0.66 0.27 0.07
Matches are distributed among these distances:
49 4 0.03
50 141 0.94
51 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTTCCTGACAGTGT
Found at i:38136308 original size:45 final size:45
Alignment explanation
Indices: 38136241--38136363 Score: 165
Period size: 45 Copynumber: 2.7 Consensus size: 45
38136231 TGAGGCCAAT
* *
38136241 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGATAGCA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * * * * *
38136286 AGTCTTATCTCCTTGAGGTTGCAGCGGAGTAGACTGAAGATAGCA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
*
38136331 AATCCTATCTCCCTGAAGTTGCAGTAGAGCAGA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGA
38136364 TCAAAATGAT
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (45 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
Found at i:38138235 original size:45 final size:45
Alignment explanation
Indices: 38138177--38138329 Score: 225
Period size: 45 Copynumber: 3.4 Consensus size: 45
38138167 CACCAGTATA
* *
38138177 CAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAAC
1 CAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAAT
* * * * *
38138223 CTGTAACAGTAACGGTAACTGTATTCGACACACAAAGTATTGAGT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAAT
*
38138268 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAAT
38138313 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
38138330 GTCGGCACAT
Statistics
Matches: 94, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 89 0.95
46 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTTGAAT
Found at i:38138617 original size:39 final size:40
Alignment explanation
Indices: 38138533--38138617 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
38138523 TTCTTTACTT
* * * *
38138533 CAGTAATTTCACAATTCAATGCATTATACATAACAATATT
1 CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
*
38138573 CAGTATTTTCACAATTCACT-CAGTAAT-CAAAACAATATC
1 CAGTATTTTCACAATTCAATGCA-TAATACAAAACAATATC
38138612 CAGTAT
1 CAGTAT
38138618 CCCATAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (40 bp):
CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
Found at i:38139724 original size:3 final size:3
Alignment explanation
Indices: 38139716--38139763 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
38139706 GATTGTATCC
* *
38139716 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
38139760 TTA T
1 TTA T
38139764 ACATATACAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:38139807 original size:23 final size:25
Alignment explanation
Indices: 38139780--38139827 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
38139770 ACACACGCAT
*
38139780 TTTTTTAT-AATATATATGCATATA
1 TTTTTTATAAATACATATGCATATA
*
38139804 TTTTTTATAAATACATGTGCATAT
1 TTTTTTATAAATACATATGCATAT
38139828 TATATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (25 bp):
TTTTTTATAAATACATATGCATATA
Found at i:38139903 original size:18 final size:17
Alignment explanation
Indices: 38139866--38139904 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
38139856 TTCTCATAGT
* *
38139866 TTTTATATACATTTATA
1 TTTTATATACATATACA
38139883 TTTTATAATACATATACA
1 TTTTAT-ATACATATACA
38139901 TTTT
1 TTTT
38139905 CCTTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATATACATATACA
Found at i:38141777 original size:7 final size:7
Alignment explanation
Indices: 38141765--38141791 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
38141755 GAATTATCAT
38141765 TTTAAAC
1 TTTAAAC
38141772 TTTAAAC
1 TTTAAAC
38141779 TTTAAAC
1 TTTAAAC
38141786 TTTAAA
1 TTTAAA
38141792 TTTCCTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (7 bp):
TTTAAAC
Found at i:38151491 original size:30 final size:30
Alignment explanation
Indices: 38151457--38151517 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
38151447 CTTTAAAGGG
* *
38151457 TTAATA-TATATTTGGTATCTAAATTTAACT
1 TTAATATTA-ATTTGGTACCTAAATTAAACT
38151487 TTAATATTCAATTTGGTACCTAAATTAAACT
1 TTAATATT-AATTTGGTACCTAAATTAAACT
38151518 GCATCATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 6 0.22
31 20 0.74
32 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (30 bp):
TTAATATTAATTTGGTACCTAAATTAAACT
Found at i:38172163 original size:29 final size:29
Alignment explanation
Indices: 38172131--38172232 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
38172121 CTTTATATTT
*
38172131 TTTTATAATTTTCTTACGA-CTTTATAAAA
1 TTTTATAATTTT-TTACGATATTTATAAAA
* * * * *
38172160 TTTTGTAATTTTTTTCTATATTTCTACATA
1 TTTTATAATTTTTTACGATATTTATA-AAA
* *
38172190 TTTTATAATTTTTTTATGATTTTTATAAAA
1 TTTTATAA-TTTTTTACGATATTTATAAAA
*
38172220 TTTTACAATTTTT
1 TTTTATAATTTTT
38172233 CTATAAATTT
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 4 0.07
29 21 0.38
30 18 0.32
31 13 0.23
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTTATAATTTTTTACGATATTTATAAAA
Found at i:38172223 original size:30 final size:30
Alignment explanation
Indices: 38172131--38172232 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 30
38172121 CTTTATATTT
* * *
38172131 TTTTATAATTTTCTTACGA-CTTTATAAAA
1 TTTTATAATTTTTTTATGATATTTATAAAA
* * * *
38172160 TTTTGTAATTTTTTTCT-ATATTTCTACATA
1 TTTTATAATTTTTTTATGATATTTATA-AAA
*
38172190 TTTTATAATTTTTTTATGATTTTTATAAAA
1 TTTTATAATTTTTTTATGATATTTATAAAA
*
38172220 TTTTACAATTTTT
1 TTTTATAATTTTT
38172233 CTATAAATTT
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
28 1 0.02
29 18 0.32
30 31 0.54
31 7 0.12
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTATAATTTTTTTATGATATTTATAAAA
Found at i:38172237 original size:21 final size:21
Alignment explanation
Indices: 38172209--38172253 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
38172199 TTTTTTATGA
38172209 TTTTTATAAA-ATTTTACAAT
1 TTTTTATAAATATTTTACAAT
* *
38172229 TTTTCTATAAATTTTTTACTAT
1 TTTT-TATAAATATTTTACAAT
38172251 TTT
1 TTT
38172254 CATATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 6 0.29
22 11 0.52
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTATAAATATTTTACAAT
Found at i:38172252 original size:22 final size:22
Alignment explanation
Indices: 38172220--38172266 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
38172210 TTTTATAAAA
38172220 TTTTACAATTTTTC-TATAAATT
1 TTTTACAA-TTTTCATATAAATT
* *
38172242 TTTTACTATTTTCATATATATT
1 TTTTACAATTTTCATATAAATT
38172264 TTT
1 TTT
38172267 AGTTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTACAATTTTCATATAAATT
Found at i:38172252 original size:60 final size:59
Alignment explanation
Indices: 38172131--38172274 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 59
38172121 CTTTATATTT
* * ** * * *
38172131 TTTTATAATTTTCTTACGA-CTTTATAAAATTTTGTAATTTTTTTCTATATTTCTACATA
1 TTTTATAATTTTTTTA-GATTTTTATAAAATTTTACAATTTTTCTATAAATTTCTACATA
*
38172190 TTTTATAATTTTTTTATGATTTTTATAAAATTTTACAATTTTTCTATAAATTTTTTAC-TA
1 TTTTATAATTTTTTTA-GATTTTTATAAAATTTTACAATTTTTCTATAAA-TTTCTACATA
*
38172250 TTTTCATATATATTTTTAG-TTTTTA
1 TTTT-ATA-ATTTTTTTAGATTTTTA
38172275 ATATTTTTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 17 0.24
60 36 0.51
61 10 0.14
62 8 0.11
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (59 bp):
TTTTATAATTTTTTTAGATTTTTATAAAATTTTACAATTTTTCTATAAATTTCTACATA
Found at i:38172253 original size:30 final size:30
Alignment explanation
Indices: 38172170--38172253 Score: 75
Period size: 30 Copynumber: 2.9 Consensus size: 30
38172160 TTTTGTAATT
* * *
38172170 TTTTTCTAT-ATTTCTA-CATATTTTATAA
1 TTTTTCTATAATTTTTATAATATTTTACAA
* * *
38172198 TTTTTTTATGATTTTTATAAAATTTTACAA
1 TTTTTCTATAATTTTTATAATATTTTACAA
*
38172228 TTTTTCTATAAATTTTT-TACTATTTT
1 TTTTTCTAT-AATTTTTATAATATTTT
38172254 CATATATATT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
28 8 0.18
29 6 0.14
30 24 0.55
31 6 0.14
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (30 bp):
TTTTTCTATAATTTTTATAATATTTTACAA
Found at i:38177174 original size:31 final size:30
Alignment explanation
Indices: 38177133--38177195 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
38177123 TATTTAATAA
38177133 TTTATATTTTTATAA-AATTTTATAATATATT
1 TTTATATTTTTATAATAATTTT-T-ATATATT
*
38177164 TTTATCTTTTTATAATAATTTTTATATATT
1 TTTATATTTTTATAATAATTTTTATATATT
38177194 TT
1 TT
38177196 GAAGTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 9 0.30
31 15 0.50
32 6 0.20
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTATATTTTTATAATAATTTTTATATATT
Found at i:38177184 original size:20 final size:21
Alignment explanation
Indices: 38177150--38177188 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38177140 TTTTATAAAA
38177150 TTTTATAATATATTTTTATCT
1 TTTTATAATATATTTTTATCT
38177171 TTTTATAATA-ATTTTTAT
1 TTTTATAATATATTTTTAT
38177189 ATATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATAATATATTTTTATCT
Found at i:38177204 original size:30 final size:31
Alignment explanation
Indices: 38177139--38177205 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
38177129 ATAATTTATA
* *
38177139 TTTTTATAAAATTTTATAATATATTTTTATC
1 TTTTTATAAAATTTTATAATATATTTTGAAC
*
38177170 TTTTTATAATAATTTT-T-ATATATTTTGAAG
1 TTTTTATAA-AATTTTATAATATATTTTGAAC
38177200 TTTTTA
1 TTTTTA
38177206 AAATTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 16 0.50
31 10 0.31
32 6 0.19
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (31 bp):
TTTTTATAAAATTTTATAATATATTTTGAAC
Found at i:38179082 original size:14 final size:14
Alignment explanation
Indices: 38179065--38179095 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
38179055 TTAAATTATG
*
38179065 AAAATAAAATCTCT
1 AAAACAAAATCTCT
38179079 AAAACAAAATCTCT
1 AAAACAAAATCTCT
38179093 AAA
1 AAA
38179096 CTAAGTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAACAAAATCTCT
Found at i:38180199 original size:22 final size:22
Alignment explanation
Indices: 38180166--38180226 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
38180156 GCCCGGCCCG
* *
38180166 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
38180189 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
* *
38180211 TTGTTATTAAAATTAA
1 TTTTTAATAAAATTAA
38180227 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:38180239 original size:16 final size:16
Alignment explanation
Indices: 38180202--38180241 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
38180192 TTAATAAAAT
* *
38180202 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
38180218 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
38180234 TAAAATTA
1 TAAAATTA
38180242 TTAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:38180326 original size:9 final size:9
Alignment explanation
Indices: 38180314--38180341 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
38180304 TTTATCAAAT
38180314 TATTAATTG
1 TATTAATTG
38180323 TATTAATTG
1 TATTAATTG
38180332 TATTAATTG
1 TATTAATTG
38180341 T
1 T
38180342 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:38180346 original size:68 final size:66
Alignment explanation
Indices: 38180230--38180372 Score: 232
Period size: 68 Copynumber: 2.1 Consensus size: 66
38180220 AAATTAATTG
* * *
38180230 TTAGTAAAATTATTAAATTATTAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
1 TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAACAAAATCTAACATTTA
38180295 A
66 A
*
38180296 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAACAAAATCTAACATT
38180361 TAA
64 TAA
38180364 TTAGTAAAA
1 TTAGTAAAA
38180373 CAAACTTGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
66 25 0.36
68 45 0.64
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.45
Consensus pattern (66 bp):
TTAGTAAAATTATCAAATTATTAATTGTTAATTGTATTAATTGTTGTAACAAAATCTAACATTTA
A
Found at i:38180912 original size:4 final size:4
Alignment explanation
Indices: 38180903--38180929 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
38180893 ATAGAATTTC
38180903 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
38180930 ATTAATGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:38194207 original size:29 final size:30
Alignment explanation
Indices: 38194144--38194211 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
38194134 TAATCAACCG
38194144 CGCACACTTAGTGCCATGCACTTTAAACTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
* * *
38194174 -ACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
38194202 CGCACACTTA
1 CGCACACTTA
38194212 CCTTTCCCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGCACTTTAAACTT
Found at i:38194323 original size:174 final size:174
Alignment explanation
Indices: 38194033--38194364 Score: 637
Period size: 174 Copynumber: 1.9 Consensus size: 174
38194023 AACTCAAGGT
* *
38194033 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38194098 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
38194163 ACTTTAAACTTACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTTACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
38194207 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38194272 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
38194337 ACTTTAAACTTACACACTTAGTGCCATG
131 ACTTTAAACTTACACACTTAGTGCCATG
38194365 TACTTTAAAC
Statistics
Matches: 155, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 155 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTTACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:38194354 original size:29 final size:29
Alignment explanation
Indices: 38194320--38194420 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
38194310 ATCAACCGCG
*
38194320 CACACTTAGTGCCATGCACTTTAAACTTA
1 CACACTTAGTGCCATGCACTTTAAACTCA
* *
38194349 CACACTTAGTGCCATGTACTTTAAACTCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
** * * * *
38194378 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
38194407 CACACTTAGTGCCA
1 CACACTTAGTGCCA
38194421 ATCTCATGAC
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCACTTTAAACTCA
Found at i:38201677 original size:29 final size:30
Alignment explanation
Indices: 38201614--38201681 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
38201604 TAATCAACCG
38201614 CGCACACTTAGTGCCATGCACTTTAAACTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
* * *
38201644 -ACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
38201672 CGCACACTTA
1 CGCACACTTA
38201682 CCTTTCCCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGCACTTTAAACTT
Found at i:38201824 original size:29 final size:29
Alignment explanation
Indices: 38201790--38201890 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
38201780 ATCAACCGCG
*
38201790 CACACTTAGTGCCATGCACTTTAAACTTA
1 CACACTTAGTGCCATGCACTTTAAACTCA
* *
38201819 CACACTTAGTGCCATGTACTTTAAACTCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
** * * * *
38201848 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
38201877 CACACTTAGTGCCA
1 CACACTTAGTGCCA
38201891 ATCTCATGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCACTTTAAACTCA
Found at i:38201852 original size:174 final size:173
Alignment explanation
Indices: 38201504--38201855 Score: 625
Period size: 174 Copynumber: 2.0 Consensus size: 173
38201494 AACTCAAGGT
* *
38201504 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38201569 GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
66 GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
**
38201634 CTTTAAACTTACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTTACACACTTAGTGCCATGCATTTCAAACTCGCAC
*
38201677 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38201742 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTC-CACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
38201807 ACTTTAAACTTACACACTTAGTGCCATGTACTTT-AAACTCGCAC
130 ACTTTAAACTTACACACTTAGTGCCATGCA-TTTCAAACTCGCAC
38201851 ACTTA
1 ACTTA
38201856 GTGCTGTACA
Statistics
Matches: 171, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
173 81 0.47
174 87 0.51
175 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (173 bp):
ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
CTTTAAACTTACACACTTAGTGCCATGCATTTCAAACTCGCAC
Found at i:38206379 original size:18 final size:18
Alignment explanation
Indices: 38206338--38206372 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
38206328 CCCACTCATA
38206338 ATAATAATAATACTAATT
1 ATAATAATAATACTAATT
*
38206356 ATAATATTAATACTAAT
1 ATAATAATAATACTAAT
38206373 ATTAATACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAATAATACTAATT
Found at i:38206380 original size:12 final size:12
Alignment explanation
Indices: 38206339--38206381 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
38206329 CCACTCATAA
* *
38206339 TAATAATAATAC
1 TAATACTAATAT
38206351 TAATTA-TAATAT
1 TAA-TACTAATAT
38206363 TAATACTAATAT
1 TAATACTAATAT
38206375 TAATACT
1 TAATACT
38206382 TACCTCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 2 0.07
12 24 0.86
13 2 0.07
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATACTAATAT
Found at i:38206747 original size:14 final size:15
Alignment explanation
Indices: 38206728--38206756 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
38206718 ATTTCAGCAT
38206728 ATTTCCT-AATTTAG
1 ATTTCCTCAATTTAG
38206742 ATTTCCTCAATTTAG
1 ATTTCCTCAATTTAG
38206757 TCCCTAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (15 bp):
ATTTCCTCAATTTAG
Found at i:38207203 original size:19 final size:19
Alignment explanation
Indices: 38207175--38207217 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
38207165 AATAAGTAAT
*
38207175 ATAT-TTTATTCTTAATAC
1 ATATGTTTATTATTAATAC
*
38207193 ATATGTTTATTATTATTAC
1 ATATGTTTATTATTAATAC
*
38207212 ACATGT
1 ATATGT
38207218 ATTTACCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (19 bp):
ATATGTTTATTATTAATAC
Found at i:38207294 original size:21 final size:22
Alignment explanation
Indices: 38207269--38207329 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
38207259 ATTTTCCTTA
*
38207269 TTTATTTATTCTTA-A-TATATT
1 TTTATTTATTATTATATTA-ATT
*
38207290 TTTATTTTTTATTATATTAATT
1 TTTATTTATTATTATATTAATT
38207312 TTTATTTATATATATATA
1 TTTATTTAT-TAT-TATA
38207330 ATATCTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 12 0.36
22 12 0.36
23 5 0.15
24 4 0.12
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTTATTATTATATTAATT
Found at i:38220064 original size:29 final size:30
Alignment explanation
Indices: 38220001--38220068 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
38219991 TAATCAACCG
38220001 CGCACACTTAGTGCCATGCACTTTAAACTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
* * *
38220031 -ACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTTAAACTT
38220059 CGCACACTTA
1 CGCACACTTA
38220069 CCTTTCCCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGCACTTTAAACTT
Found at i:38220211 original size:29 final size:29
Alignment explanation
Indices: 38220177--38220277 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
38220167 ATCAACCGCG
*
38220177 CACACTTAGTGCCATGCACTTTAAACTTA
1 CACACTTAGTGCCATGCACTTTAAACTCA
* *
38220206 CACACTTAGTGCCATGTACTTTAAACTCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
** * * * *
38220235 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATGCACTTTAAACTCA
38220264 CACACTTAGTGCCA
1 CACACTTAGTGCCA
38220278 ATCTCATGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCACTTTAAACTCA
Found at i:38220239 original size:174 final size:173
Alignment explanation
Indices: 38219891--38220242 Score: 625
Period size: 174 Copynumber: 2.0 Consensus size: 173
38219881 AACTCAAGGT
* *
38219891 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38219956 GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
66 GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
**
38220021 CTTTAAACTTACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTTACACACTTAGTGCCATGCATTTCAAACTCGCAC
*
38220064 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
38220129 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTC-CACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
38220194 ACTTTAAACTTACACACTTAGTGCCATGTACTTT-AAACTCGCAC
130 ACTTTAAACTTACACACTTAGTGCCATGCA-TTTCAAACTCGCAC
38220238 ACTTA
1 ACTTA
38220243 GTGCTGTACA
Statistics
Matches: 171, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
173 81 0.47
174 87 0.51
175 3 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (173 bp):
ACTTACCTTTCCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
GAAAATATATATTGGGTTCCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
CTTTAAACTTACACACTTAGTGCCATGCATTTCAAACTCGCAC
Found at i:38224766 original size:18 final size:18
Alignment explanation
Indices: 38224725--38224759 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
38224715 CCCACTCATA
38224725 ATAATAATAATACTAATT
1 ATAATAATAATACTAATT
*
38224743 ATAATATTAATACTAAT
1 ATAATAATAATACTAAT
38224760 ATTAATACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAATAATACTAATT
Found at i:38224767 original size:12 final size:12
Alignment explanation
Indices: 38224726--38224768 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
38224716 CCACTCATAA
* *
38224726 TAATAATAATAC
1 TAATACTAATAT
38224738 TAATTA-TAATAT
1 TAA-TACTAATAT
38224750 TAATACTAATAT
1 TAATACTAATAT
38224762 TAATACT
1 TAATACT
38224769 TACCTCACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 2 0.07
12 24 0.86
13 2 0.07
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATACTAATAT
Found at i:38225703 original size:14 final size:17
Alignment explanation
Indices: 38225684--38225721 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
38225674 ATTTATTTCT
38225684 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
38225698 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
38225715 TAATATA
1 TAATATA
38225722 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:38225729 original size:12 final size:11
Alignment explanation
Indices: 38225701--38225744 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
38225691 ATATTTATAA
38225701 TATAATTAATT
1 TATAATTAATT
*
38225712 TAATAATATACTT
1 T-ATAAT-TAATT
38225725 TATAATTAATT
1 TATAATTAATT
38225736 TATATATTA
1 TATA-ATTA
38225745 TATAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
11 9 0.32
12 14 0.50
13 5 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TATAATTAATT
Found at i:38225748 original size:20 final size:23
Alignment explanation
Indices: 38225696--38225758 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
38225686 ATATAATATT
38225696 TATA-ATATAATTAATTTAATAA
1 TATATATATAATTAATTTAATAA
* *
38225718 TATACTTTATAATTAATTTATATAT
1 TATA-TATATAATTAATTTA-ATAA
* *
38225743 TATATAAATAAATAAT
1 TATATATATAATTAAT
38225759 ATAAATATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 4 0.12
24 22 0.67
25 7 0.21
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TATATATATAATTAATTTAATAA
Found at i:38225760 original size:20 final size:20
Alignment explanation
Indices: 38225713--38225761 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
38225703 TAATTAATTT
*
38225713 AATAATATACTTTATAATTA
1 AATAATATACTTTATAAATA
* *
38225733 ATTTATATA-TTATATAAATA
1 AATAATATACTT-TATAAATA
38225753 AATAATATA
1 AATAATATA
38225762 AATATCTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATAATATACTTTATAAATA
Found at i:38244224 original size:19 final size:20
Alignment explanation
Indices: 38244186--38244224 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
38244176 TTTTAGAAAA
* *
38244186 TTTTTAAAATTTTAACTTTT
1 TTTTTAAAATTATAAATTTT
38244206 TTTTTAAAA-TATAAATTTT
1 TTTTTAAAATTATAAATTTT
38244225 GAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTAAAATTATAAATTTT
Found at i:38244258 original size:23 final size:23
Alignment explanation
Indices: 38244205--38244255 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
38244195 TTTTAACTTT
38244205 TTTTTTAAAATATAAATTTTGAA
1 TTTTTTAAAATATAAATTTTGAA
*
38244228 TTTTTTAAAA-AT-TATTTTGAA
1 TTTTTTAAAATATAAATTTTGAA
38244249 TTATTTT
1 TT-TTTT
38244256 TAATTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 10 0.38
22 6 0.23
23 10 0.38
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTTTTAAAATATAAATTTTGAA
Found at i:38244422 original size:18 final size:19
Alignment explanation
Indices: 38244401--38244438 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
38244391 TCAAGTTGAC
*
38244401 TCGAATAATTCAAAT-AAT
1 TCGAATAACTCAAATCAAT
38244419 TCGAATAACTCAAATCAAT
1 TCGAATAACTCAAATCAAT
38244438 T
1 T
38244439 AACTCGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
TCGAATAACTCAAATCAAT
Found at i:38248887 original size:20 final size:21
Alignment explanation
Indices: 38248841--38248887 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
38248831 AGTATAAATC
*
38248841 AGTTATATAATTAACATATGA
1 AGTTATATAATTAACAAATGA
* * *
38248862 AATTAT-TAATTAAGAAATGT
1 AGTTATATAATTAACAAATGA
38248882 AGTTAT
1 AGTTAT
38248888 GTGTTTAGAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (21 bp):
AGTTATATAATTAACAAATGA
Done.