Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 118 of 208
Found at i:38614871 original size:75 final size:75
Alignment explanation
Indices: 38614788--38614962 Score: 273
Period size: 75 Copynumber: 2.3 Consensus size: 75
38614778 CTAACCTAAT
38614788 TTAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAA
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATT-AAAA
38614851 ACCCTAAACCC
65 ACCCTAAACCC
* * * * *
38614862 TTAACTTAAAAAACCTAATCTAATTTACTTAAAACCCCTAAACCCTAACCTAATTTAATTTAAAA
1 TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAA
38614927 CCCTAAACCC
66 CCCTAAACCC
*
38614937 TTAACTTAAAAACTCTAACCTAATTT
1 TTAACTTAAAAACCCTAACCTAATTT
38614963 GATAATTTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
74 4 0.04
75 67 0.74
76 20 0.22
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (75 bp):
TTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAATTTAATTAAAAA
CCCTAAACCC
Found at i:38614891 original size:23 final size:23
Alignment explanation
Indices: 38614770--38614895 Score: 105
Period size: 23 Copynumber: 5.2 Consensus size: 23
38614760 TTTGATGTAA
*
38614770 TAAAAACCCTAACCTAATTTAAT
1 TAAAAAACCTAACCTAATTTAAT
*
38614793 TAAAAACCCTAACCTAATTTAAT
1 TAAAAAACCTAACCTAATTTAAT
38614816 TAAAAACCCTAACCCTAACCTAATTTAAT
1 T-AAAA----AA-CCTAACCTAATTTAAT
*
38614845 TAAAAAACCCTAAACC---CTTAACT
1 TAAAAAA-CCT-AACCTAATTTAA-T
* *
38614868 TAAAAAACCTAATCTAATTTACT
1 TAAAAAACCTAACCTAATTTAAT
38614891 TAAAA
1 TAAAA
38614896 CCCCTAAACC
Statistics
Matches: 87, Mismatches: 5, Indels: 22
0.76 0.04 0.19
Matches are distributed among these distances:
21 3 0.03
22 7 0.08
23 38 0.44
24 13 0.15
25 4 0.05
28 5 0.06
29 17 0.20
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAAAAACCTAACCTAATTTAAT
Found at i:38614902 original size:23 final size:23
Alignment explanation
Indices: 38614770--38614829 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
38614760 TTTGATGTAA
38614770 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
38614793 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
38614816 TAAAAACCCTAACC
1 TAAAAACCCTAACC
38614830 CTAACCTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:38614909 original size:30 final size:30
Alignment explanation
Indices: 38614875--38614937 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
38614865 ACTTAAAAAA
*
38614875 CCTAATCTAATTT-ACTTAAAACCCCTAAAC
1 CCTAACCTAATTTAACTTAAAA-CCCTAAAC
*
38614905 CCTAACCTAATTTAATTTAAAACCCTAAAC
1 CCTAACCTAATTTAACTTAAAACCCTAAAC
38614935 CCT
1 CCT
38614938 TAACTTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 23 0.77
31 7 0.23
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (30 bp):
CCTAACCTAATTTAACTTAAAACCCTAAAC
Found at i:38618576 original size:126 final size:125
Alignment explanation
Indices: 38618299--38618609 Score: 441
Period size: 126 Copynumber: 2.5 Consensus size: 125
38618289 GAGATTTTAT
*
38618299 AAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATATTATTTGCTCAGAAACGTC--AAA
1 AAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAA
* *
38618362 AAAATTATTTCTTACATGACCTACTGTAGCAAAAACGCGCTGATGAGGCCGCGATTTCGC
66 AAAATTATTTCTTACATGACCTACTGTAGCAAAAACGCGCTCATGAGGCCACGATTTCGC
*
38618422 AAATTCTTCTCAAATAGCATCCTCCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAA
1 AAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAA
* * *
38618487 AATAATTATTTCTTCCGTGACCTACTGTAGCAAAAGCGCG-TCCATGAAGG-CACGATTTCGC
66 AA-AATTATTTCTTACATGACCTACTGTAGCAAAAACGCGCT-CATG-AGGCCACGATTTCGC
* ** * * **
38618548 AAATTCTTCTCAAATACCATAATGCTAGAAGTGATTTTATGCTATTTTATCAGAAACGTCAA
1 AAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
38618610 CTCGAAATTA
Statistics
Matches: 168, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
123 58 0.35
125 6 0.04
126 101 0.60
127 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (125 bp):
AAATTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAA
AAAATTATTTCTTACATGACCTACTGTAGCAAAAACGCGCTCATGAGGCCACGATTTCGC
Found at i:38624530 original size:96 final size:96
Alignment explanation
Indices: 38624407--38624638 Score: 322
Period size: 96 Copynumber: 2.4 Consensus size: 96
38624397 CGTGTTTATT
* * *
38624407 GTTTTTAAGAAAAAATCAATTAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTAT
1 GTTTTTAAGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATT-T
*
38624472 TTA-AAAATCAGATAATGGTTTAGAGTTAAGG
65 TTATAAAATCAGATAAGGGTTTAGAGTTAAGG
* * *
38624503 GTTTTTAAGGAAAAATTAAATAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTT
1 GTTTTTAAGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTT
* * * *
38624568 TATAAAATTAGATTAGGGTTTAGGGTTTAGG
66 TATAAAATCAGATAAGGGTTTAGAGTTAAGG
* *
38624599 GTTTTTAAGTAAAAATTTAAATAAATTAGGGTTTGGGGTT
1 GTTTTTAAG-AAAAAATTAAATAAATTAGGGTTTAGGGTT
38624639 TAGGGTTACT
Statistics
Matches: 119, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
95 4 0.03
96 89 0.75
97 26 0.22
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (96 bp):
GTTTTTAAGAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAATTTT
TATAAAATCAGATAAGGGTTTAGAGTTAAGG
Found at i:38628620 original size:18 final size:18
Alignment explanation
Indices: 38628579--38628621 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
38628569 GACTAGAAAA
* * *
38628579 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
38628597 AAGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
38628615 AGGATAC
1 AGGATAC
38628622 GCACCTATCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:38630397 original size:12 final size:12
Alignment explanation
Indices: 38630377--38630410 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 12
38630367 AATTTTTACG
38630377 ATTTAAAAAAAA
1 ATTTAAAAAAAA
38630389 ATTTTAAAAAAAAA
1 A-TTT-AAAAAAAA
38630403 ATTTAAAA
1 ATTTAAAA
38630411 CTTTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.25
13 6 0.30
14 9 0.45
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATTTAAAAAAAA
Found at i:38630400 original size:14 final size:13
Alignment explanation
Indices: 38630377--38630410 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
38630367 AATTTTTACG
38630377 ATTTAAAAAAAAA
1 ATTTAAAAAAAAA
*
38630390 TTTTAAAAAAAAA
1 ATTTAAAAAAAAA
38630403 ATTTAAAA
1 ATTTAAAA
38630411 CTTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATTTAAAAAAAAA
Found at i:38630468 original size:11 final size:11
Alignment explanation
Indices: 38630454--38630518 Score: 76
Period size: 11 Copynumber: 5.9 Consensus size: 11
38630444 TTTAAATAGA
38630454 AATTTGAGAGG
1 AATTTGAGAGG
38630465 AATTTGAGAGG
1 AATTTGAGAGG
* *
38630476 AAATTGAGAAG
1 AATTTGAGAGG
* *
38630487 AATTTGAAAGA
1 AATTTGAGAGG
* *
38630498 AAATTGAAAGG
1 AATTTGAGAGG
38630509 AATTTGAGAG
1 AATTTGAGAG
38630519 AATATTAGAG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 44 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (11 bp):
AATTTGAGAGG
Found at i:38630484 original size:22 final size:22
Alignment explanation
Indices: 38630452--38630518 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
38630442 CTTTTAAATA
38630452 GAAATTTGAGAGGAATTTGAGAG
1 GAAA-TTGAGAGGAATTTGAGAG
* *
38630475 GAAATTGAGAAGAATTTGAAAG
1 GAAATTGAGAGGAATTTGAGAG
* *
38630497 AAAATTGAAAGGAATTTGAGAG
1 GAAATTGAGAGGAATTTGAGAG
38630519 AATATTAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.30, T:0.24
Consensus pattern (22 bp):
GAAATTGAGAGGAATTTGAGAG
Found at i:38630540 original size:12 final size:11
Alignment explanation
Indices: 38630451--38630543 Score: 64
Period size: 11 Copynumber: 8.5 Consensus size: 11
38630441 TCTTTTAAAT
*
38630451 AGAAATTTGAG
1 AGAAAATTGAG
* *
38630462 AGGAATTTGAG
1 AGAAAATTGAG
*
38630473 AGGAAATTGAG
1 AGAAAATTGAG
* *
38630484 A-AGAATTTGAA
1 AGA-AAATTGAG
*
38630495 AGAAAATTGAA
1 AGAAAATTGAG
* *
38630506 AGGAATTTGAG
1 AGAAAATTGAG
*
38630517 AGAATATT-AG
1 AGAAAATTGAG
38630527 AGACAAATTGAG
1 AGA-AAATTGAG
38630539 AGAAA
1 AGAAA
38630544 GGATTTAGTT
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
10 5 0.08
11 54 0.83
12 6 0.09
ACGTcount: A:0.49, C:0.01, G:0.27, T:0.23
Consensus pattern (11 bp):
AGAAAATTGAG
Found at i:38631067 original size:9 final size:9
Alignment explanation
Indices: 38631044--38631089 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
38631034 GAATTTTATG
*
38631044 ATTCGAATA
1 ATTCAAATA
*
38631053 ACTCAAATA
1 ATTCAAATA
38631062 ATTCAAATA
1 ATTCAAATA
*
38631071 ACTCAAATA
1 ATTCAAATA
*
38631080 ATTCGAATA
1 ATTCAAATA
38631089 A
1 A
38631090 CAGATTAGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.28
Consensus pattern (9 bp):
ATTCAAATA
Found at i:38631070 original size:18 final size:18
Alignment explanation
Indices: 38631044--38631090 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
38631034 GAATTTTATG
38631044 ATTCGAATAACTCAAATA
1 ATTCGAATAACTCAAATA
*
38631062 ATTCAAATAACTCAAATA
1 ATTCGAATAACTCAAATA
38631080 ATTCGAATAAC
1 ATTCGAATAAC
38631091 AGATTAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (18 bp):
ATTCGAATAACTCAAATA
Found at i:38632768 original size:13 final size:13
Alignment explanation
Indices: 38632752--38632796 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
38632742 TTTAAACTAA
38632752 ACTTTTCCACAAC
1 ACTTTTCCACAAC
* *
38632765 ACTTTT-CAAAAGT
1 ACTTTTCCACAA-C
38632778 ACTTTTCCACAAC
1 ACTTTTCCACAAC
38632791 ACTTTT
1 ACTTTT
38632797 TAAAAGCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.31, C:0.29, G:0.02, T:0.38
Consensus pattern (13 bp):
ACTTTTCCACAAC
Found at i:38632770 original size:26 final size:26
Alignment explanation
Indices: 38632751--38632802 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
38632741 TTTTAAACTA
38632751 AACTTTTCCACAACACTTTTCAAAAG
1 AACTTTTCCACAACACTTTTCAAAAG
* *
38632777 TACTTTTCCACAACACTTTTTAAAAG
1 AACTTTTCCACAACACTTTTCAAAAG
38632803 CATTACCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.35
Consensus pattern (26 bp):
AACTTTTCCACAACACTTTTCAAAAG
Found at i:38640616 original size:21 final size:22
Alignment explanation
Indices: 38640583--38640625 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
38640573 CAATGGGTAA
*
38640583 AGTTCTGATATGAAAC-AATATG
1 AGTTCTGAAATG-AACTAATATG
38640605 AGTT-TGAAATGAACTAATATG
1 AGTTCTGAAATGAACTAATATG
38640626 GGTATATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.16
21 12 0.63
22 4 0.21
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.33
Consensus pattern (22 bp):
AGTTCTGAAATGAACTAATATG
Found at i:38645209 original size:545 final size:545
Alignment explanation
Indices: 38644180--38645263 Score: 2051
Period size: 545 Copynumber: 2.0 Consensus size: 545
38644170 TTATTTTGCT
38644180 GCCTAATTCGTGTGGGTGGTAGAGTTGGATTGAAATACTGCTAAATGGAGTTTGAACTGGTCATA
1 GCCTAATTCGTGTGGGTGGTAGAGTTGGATTGAAATACTGCTAAATGGAGTTTGAACTGGTCATA
* *
38644245 GAGAGAATTGAGGAGGGATATTTGGAGATGTTAGATGAGAGAATATTGGGATTTGGGGAGGTTGT
66 GAGAGAATTGAGGAGGGATATTTGGAGATATTAGAGGAGAGAATATTGGGATTTGGGGAGGTTGT
*
38644310 TGTTGTGGAGAGATATATATCACATCTCATTTGTTCCTTGTTCTCGATGGGAGATCGGTGAGGTT
131 TGTTATGGAGAGATATATATCACATCTCATTTGTTCCTTGTTCTCGATGGGAGATCGGTGAGGTT
38644375 TTCAAGGTTTTCGTCGCTTTCTCTAACCTGCATTGTTTCCATTCCTAACTGGTGGTGGTCGAGGT
196 TTCAAGGTTTTCGTCGCTTTCTCTAACCTGCATTGTTTCCATTCCTAACTGGTGGTGGTCGAGGT
*
38644440 TGATTGGCACATTGCCTGGGAACCAATGGTGCGATGATTATTGATTTTTGGGATAAGAGTGTTCG
261 TGATTGGCACATTGCCCGGGAACCAATGGTGCGATGATTATTGATTTTTGGGATAAGAGTGTTCG
*
38644505 GAACAAAGGGAATATGCAAATCGCAACAGGTGTGTAACCAACCCACTGTAAGTGTAAAATGACAA
326 GAACAAAGGGAATATGCAAATCGCAACAGGTGTGTAACCAACCCACTGTAACTGTAAAATGACAA
*
38644570 AAGTCAAAAAGCCGAAATACGATGTTGAGACCACACGAGTGTGCGATCACTCATGTGGAAAGCCA
391 AAGTCAAAAAGCCGAAATACGACGTTGAGACCACACGAGTGTGCGATCACTCATGTGGAAAGCCA
* *
38644635 AACCTGTGAATCATGGGCGATAAACTGTAGAGGTCTCCATGAGCATTTCCGTGGGCTTAGGCCGT
456 AACCTGTGAATCATAGGCGATAAACTGTAGAGGTCTCCATGAGCATTTCCATGGGCTTAGGCCGT
*
38644700 AATGAGCCATGTTGGACCAAAATGA
521 AATGAGCCACGTTGGACCAAAATGA
38644725 GCCTAATTCGTGTGGGTGGTAGAGTTGGATTGAAATACTGCTAAATGGAGTTTGAACTGGTCATA
1 GCCTAATTCGTGTGGGTGGTAGAGTTGGATTGAAATACTGCTAAATGGAGTTTGAACTGGTCATA
*
38644790 GAGAGAATTGAGGAGTGATATTTGGAGATATTAGAGGAGAGAATATTGGGATTTGGGGAGGTTGT
66 GAGAGAATTGAGGAGGGATATTTGGAGATATTAGAGGAGAGAATATTGGGATTTGGGGAGGTTGT
38644855 TGTTATGGAGAGATATATATCACATCTCATTTGTTCCTTGTTCTCGATGGGAGATCGGTGAGGTT
131 TGTTATGGAGAGATATATATCACATCTCATTTGTTCCTTGTTCTCGATGGGAGATCGGTGAGGTT
*
38644920 TTCAAGGTTTTCGTCGCTTTCTCTAACCTGCATTGTTTCCATTCTTAACTGGTGGTGGTCGAGGT
196 TTCAAGGTTTTCGTCGCTTTCTCTAACCTGCATTGTTTCCATTCCTAACTGGTGGTGGTCGAGGT
*
38644985 TGGTTGGCACATTGCCCGGGAACCAATGGTGCGATGATTATTGATTTTTGGGATAAGAGTGTTCG
261 TGATTGGCACATTGCCCGGGAACCAATGGTGCGATGATTATTGATTTTTGGGATAAGAGTGTTCG
38645050 GAACAAAGGGAATATGCAAATCGCAACAGGTGTGTAACCAACCCACTGTAACTGTAAAATGACAA
326 GAACAAAGGGAATATGCAAATCGCAACAGGTGTGTAACCAACCCACTGTAACTGTAAAATGACAA
*
38645115 AAGTCAAAAAGCCGAAATACGACGTTGAGACCACACGAGTGTGCGATCGCTCATGTGGAAAGCCA
391 AAGTCAAAAAGCCGAAATACGACGTTGAGACCACACGAGTGTGCGATCACTCATGTGGAAAGCCA
38645180 AACCTGTGAATCATAGGCGATAAACTGTAGAGGTCTCCATGAGCATTTCCATGGGCTTAGGCCGT
456 AACCTGTGAATCATAGGCGATAAACTGTAGAGGTCTCCATGAGCATTTCCATGGGCTTAGGCCGT
38645245 AATGAGCCACGTTGGACCA
521 AATGAGCCACGTTGGACCA
38645264 TAATAGGTCG
Statistics
Matches: 526, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
545 526 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (545 bp):
GCCTAATTCGTGTGGGTGGTAGAGTTGGATTGAAATACTGCTAAATGGAGTTTGAACTGGTCATA
GAGAGAATTGAGGAGGGATATTTGGAGATATTAGAGGAGAGAATATTGGGATTTGGGGAGGTTGT
TGTTATGGAGAGATATATATCACATCTCATTTGTTCCTTGTTCTCGATGGGAGATCGGTGAGGTT
TTCAAGGTTTTCGTCGCTTTCTCTAACCTGCATTGTTTCCATTCCTAACTGGTGGTGGTCGAGGT
TGATTGGCACATTGCCCGGGAACCAATGGTGCGATGATTATTGATTTTTGGGATAAGAGTGTTCG
GAACAAAGGGAATATGCAAATCGCAACAGGTGTGTAACCAACCCACTGTAACTGTAAAATGACAA
AAGTCAAAAAGCCGAAATACGACGTTGAGACCACACGAGTGTGCGATCACTCATGTGGAAAGCCA
AACCTGTGAATCATAGGCGATAAACTGTAGAGGTCTCCATGAGCATTTCCATGGGCTTAGGCCGT
AATGAGCCACGTTGGACCAAAATGA
Found at i:38645559 original size:27 final size:27
Alignment explanation
Indices: 38645528--38645889 Score: 429
Period size: 27 Copynumber: 13.4 Consensus size: 27
38645518 CCCTAAAATA
* * *
38645528 GGTAAAATAACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
38645555 GGTAAGATGACCAAAATACCTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
38645582 AGTAAAATGACCAAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* **
38645609 GGTAAAATGACCGGAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
38645636 GATAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
38645663 GGTAAAATAATCGAAATACTCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
38645690 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
38645717 GGTAGAATGATCGAAATATCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
38645744 GGTAAAATGACCGATAGACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
38645771 GGTAAAATGATCGAAATA-CCCTATTAG
1 GGTAAAATGACCGAAATACCCCCA-TAG
38645798 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
38645825 GGTAGAATGGCCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** *
38645852 GGTAAAATGATTGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
38645879 GGTAAAATGAC
1 GGTAAAATGAC
38645890 TGTTATACCC
Statistics
Matches: 284, Mismatches: 49, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.01
27 276 0.97
28 4 0.01
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:38647717 original size:30 final size:29
Alignment explanation
Indices: 38647678--38647735 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
38647668 CCTTTTCACT
38647678 CTCGAACTCTTTTTCATAGTTCTTTTCTTG
1 CTCGAACTCTTTTTC-TAGTTCTTTTCTTG
* **
38647708 CTCGCACTCTTTTTCTTTTTCTTTTCTT
1 CTCGAACTCTTTTTCTAGTTCTTTTCTT
38647736 TCAATTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.09, C:0.26, G:0.07, T:0.59
Consensus pattern (29 bp):
CTCGAACTCTTTTTCTAGTTCTTTTCTTG
Found at i:38648852 original size:23 final size:21
Alignment explanation
Indices: 38648825--38648871 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 21
38648815 TTTTTTCAAA
38648825 TTTTATAT-TTTGCACAAACTTTT
1 TTTTATATATTTG-A-AAA-TTTT
38648848 TTTTATATATTTGAAAATTTT
1 TTTTATATATTTGAAAATTTT
38648869 TTT
1 TTT
38648872 AATCGAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 7 0.30
22 3 0.13
23 9 0.39
24 4 0.17
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTATATATTTGAAAATTTT
Found at i:38651177 original size:21 final size:22
Alignment explanation
Indices: 38651143--38651185 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
38651133 CAACGGGTAA
*
38651143 AGTTCTGATATGAAAC-AATATG
1 AGTTCGGATATG-AACTAATATG
38651165 AGTTCGGA-ATGAACTAATATG
1 AGTTCGGATATGAACTAATATG
38651186 GGTATATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.16
21 9 0.47
22 7 0.37
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (22 bp):
AGTTCGGATATGAACTAATATG
Found at i:38652295 original size:27 final size:29
Alignment explanation
Indices: 38652259--38652340 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 29
38652249 GAATATAAAG
38652259 GGGGTTGCTAAGTGCTGATTCCC-TCA-A
1 GGGGTTGCTAAGTGCTGATTCCCATCATA
*
38652286 GGGGTTGCTAAGTGCTGATTCCCCGAATCATT
1 GGGGTTGCTAAGTGCTGATT-CCC--ATCATA
38652318 GGTGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
38652341 ACCGTATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
27 20 0.42
28 3 0.06
31 3 0.06
32 4 0.08
33 18 0.38
ACGTcount: A:0.17, C:0.21, G:0.30, T:0.32
Consensus pattern (29 bp):
GGGGTTGCTAAGTGCTGATTCCCATCATA
Found at i:38652406 original size:74 final size:75
Alignment explanation
Indices: 38652284--38652569 Score: 414
Period size: 74 Copynumber: 3.8 Consensus size: 75
38652274 TGATTCCCTC
38652284 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
38652349 TTAAATGTGA
66 TTAAATGTGA
*
38652359 AAGGGGTTGCTAAGT-CTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
38652423 TTAAATGTGA
66 TTAAATGTGA
* * * * * *
38652433 AAGGTGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGTTTGCTTAGTTCTGATTCCACTACAT-
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCAC--CGTA
* * *
38652497 TTTTGAAGGTGA
64 TCTTAAATGTGA
* * * *
38652509 AAGGGGTTGCTAAGTGTTGATTCCCAGAATCACTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
38652570 ATAACGGATA
Statistics
Matches: 187, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
74 73 0.39
75 53 0.28
76 59 0.32
77 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTAAATGTGA
Found at i:38653970 original size:26 final size:25
Alignment explanation
Indices: 38653947--38654015 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
38653937 CATATGAAAC
38653947 TCTT-TGAAAAGCCTTTGTGGTGAA
1 TCTTCTGAAAAGCCTTTGTGGTGAA
* *
38653971 TCTTCTGGAAAGCCTTTGTTGCT-AA
1 TCTTCTGAAAAGCCTTTG-TGGTGAA
38653996 CTCTCTCTG-AAAGCCTTTGT
1 -TCT-TCTGAAAAGCCTTTGT
38654016 TGCATGTTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 4 0.10
25 15 0.38
26 16 0.41
27 4 0.10
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (25 bp):
TCTTCTGAAAAGCCTTTGTGGTGAA
Found at i:38654016 original size:26 final size:26
Alignment explanation
Indices: 38653954--38654018 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
38653944 AACTCTTTGA
*
38653954 AAAGCCTTTG-TGGTGAATCTTCTGG
1 AAAGCCTTTGTTGCTGAATCTTCTGG
38653979 AAAGCCTTTGTTGCT-AACTCTCTCT-G
1 AAAGCCTTTGTTGCTGAA-TCT-TCTGG
38654005 AAAGCCTTTGTTGC
1 AAAGCCTTTGTTGC
38654019 ATGTTACCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
25 12 0.33
26 21 0.58
27 3 0.08
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
AAAGCCTTTGTTGCTGAATCTTCTGG
Found at i:38658569 original size:20 final size:19
Alignment explanation
Indices: 38658544--38658618 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 19
38658534 CTGTTCAAAT
38658544 CCTATAATCATAACTCGATA
1 CCTATAATCATAACT-GATA
*
38658564 CCTATAATCATAACTGTTCAAA
1 CCTATAATCATAACTG---ATA
38658586 TCCTATAATCATAACTTGATA
1 -CCTATAATCATAAC-TGATA
38658607 CCTATAATCATA
1 CCTATAATCATA
38658619 GCCTGCCAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.02
20 27 0.56
21 2 0.04
22 2 0.04
23 14 0.29
24 2 0.04
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (19 bp):
CCTATAATCATAACTGATA
Found at i:38658593 original size:43 final size:43
Alignment explanation
Indices: 38658532--38658618 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
38658522 AATTTAGGTC
38658532 AACTGTTCAAATCCTATAATCATAACTCGATACCTATAATCAT
1 AACTGTTCAAATCCTATAATCATAACTCGATACCTATAATCAT
*
38658575 AACTGTTCAAATCCTATAATCATAACTTGATACCTATAATCAT
1 AACTGTTCAAATCCTATAATCATAACTCGATACCTATAATCAT
38658618 A
1 A
38658619 GCCTGCCAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (43 bp):
AACTGTTCAAATCCTATAATCATAACTCGATACCTATAATCAT
Found at i:38658594 original size:23 final size:23
Alignment explanation
Indices: 38658532--38658601 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
38658522 AATTTAGGTC
38658532 AACTGTTCAAATCCTATAATCAT
1 AACTGTTCAAATCCTATAATCAT
*
38658555 AAC---TC-GATACCTATAATCAT
1 AACTGTTCAAAT-CCTATAATCAT
38658575 AACTGTTCAAATCCTATAATCAT
1 AACTGTTCAAATCCTATAATCAT
38658598 AACT
1 AACT
38658602 TGATACCTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 2 0.05
20 16 0.40
23 20 0.50
24 2 0.05
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (23 bp):
AACTGTTCAAATCCTATAATCAT
Found at i:38660131 original size:37 final size:37
Alignment explanation
Indices: 38660015--38660131 Score: 101
Period size: 37 Copynumber: 3.2 Consensus size: 37
38660005 ATCTGAAAAT
* *
38660015 ACGCCAGAAGCTCATAAGAGCTAATCCACCCGATAAC
1 ACGCCAGATGCTCATAAGAGCTAATCCACCCAATAAC
* * ** ** * * *
38660052 ATGGCA-ATTGCTCCGAAGAGCTTGTCCAACTAAAAAC
1 ACGCCAGA-TGCTCATAAGAGCTAATCCACCCAATAAC
* *
38660089 GCGCCAGATGCTCATTAGAGCTAATCCACCCAATAAC
1 ACGCCAGATGCTCATAAGAGCTAATCCACCCAATAAC
38660126 ACGCCA
1 ACGCCA
38660132 AAAAAAAGAG
Statistics
Matches: 55, Mismatches: 23, Indels: 4
0.67 0.28 0.05
Matches are distributed among these distances:
36 1 0.02
37 53 0.96
38 1 0.02
ACGTcount: A:0.35, C:0.31, G:0.17, T:0.17
Consensus pattern (37 bp):
ACGCCAGATGCTCATAAGAGCTAATCCACCCAATAAC
Found at i:38663070 original size:19 final size:20
Alignment explanation
Indices: 38663032--38663076 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
38663022 ACTTTAAGCT
* *
38663032 AAATTTAGCTCCTTATTTTC
1 AAATTTAGCCCCTTAATTTC
38663052 AAATTTA-CCCCTTAATTTC
1 AAATTTAGCCCCTTAATTTC
38663071 AAATTT
1 AAATTT
38663077 TTTACAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (20 bp):
AAATTTAGCCCCTTAATTTC
Found at i:38669136 original size:46 final size:47
Alignment explanation
Indices: 38669052--38669419 Score: 426
Period size: 46 Copynumber: 7.6 Consensus size: 47
38669042 TTTGAGTACT
* **
38669052 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTATCGGCTACACTTA
* *
38669098 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTATCGGCTACACTTA
38669150 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TCGGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTATCGGCTACACTTA
*
38669196 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTATCGGCTACACTTA
38669248 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TCGGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTATCGGCTACACTTA
*
38669294 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTATCGGCTACACTTA
* **
38669346 TCTGATCAAGAGACAAAGTGATAAGTGATAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTATCGGCTACACTTA
*
38669392 TCTGATCAAGAGACAAAGTGATAAGTGA
1 TCTGATCAAGTGACAAAGTGATAAGTGA
38669420 CTACACTTAT
Statistics
Matches: 290, Mismatches: 14, Indels: 36
0.85 0.04 0.11
Matches are distributed among these distances:
46 160 0.55
52 130 0.45
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (47 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTATCGGCTACACTTA
Found at i:38669172 original size:98 final size:98
Alignment explanation
Indices: 38669052--38669419 Score: 637
Period size: 98 Copynumber: 3.7 Consensus size: 98
38669042 TTTGAGTACT
* *
38669052 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
38669117 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
38669150 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
38669215 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
38669248 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
38669313 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * *
38669346 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
*
38669411 GATAAGTGA
65 GAAAAGTGA
38669420 CTACACTTAT
Statistics
Matches: 259, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
98 247 0.95
99 12 0.05
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:38669427 original size:37 final size:37
Alignment explanation
Indices: 38669382--38669547 Score: 305
Period size: 37 Copynumber: 4.5 Consensus size: 37
38669372 GATAGCTTTA
*
38669382 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
38669419 ACTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
38669456 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
38669493 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
38669530 GCTACACTTATCTGATCA
1 GCTACACTTATCTGATCA
38669548 GGGACAAGTG
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 125 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:38671985 original size:50 final size:50
Alignment explanation
Indices: 38671861--38672100 Score: 189
Period size: 50 Copynumber: 4.7 Consensus size: 50
38671851 GATAATAACA
* * ** *
38671861 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTTC-T-T-GT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGT
* * * * **
38671908 ACTACCAATGCCATATCCCAGATATGGTCCTACATGGGAGTTCTCATATCGT
1 --TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGT
* ** * *
38671960 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGT
** * *
38672010 TGCCAACACTATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GT
* *
38672066 TGCCAATGCCATGTCCCAGACGTGGCCTTACATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGG
38672101 AATCTCATTC
Statistics
Matches: 149, Mismatches: 33, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
49 34 0.23
50 79 0.53
51 1 0.01
52 2 0.01
53 2 0.01
56 31 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGT
Found at i:38672479 original size:30 final size:30
Alignment explanation
Indices: 38672445--38672501 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
38672435 ATTGACTTTT
38672445 ACTTTGGCAAAATTACA-TTTTTACCCCTAA
1 ACTTTGGCAAAATTACACTTTTT-CCCCTAA
* * *
38672475 ACTTTTGCATATTTACACTTTTTCCCC
1 ACTTTGGCAAAATTACACTTTTTCCCC
38672502 AAAGCTAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 18 0.78
31 5 0.22
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (30 bp):
ACTTTGGCAAAATTACACTTTTTCCCCTAA
Found at i:38675341 original size:19 final size:19
Alignment explanation
Indices: 38675317--38675408 Score: 91
Period size: 18 Copynumber: 4.9 Consensus size: 19
38675307 TTAAAAACAC
38675317 CATATTTCATTTCTCATCT
1 CATATTTCATTTCTCATCT
* *
38675336 CATA-TTCATTTC-AAGTTT
1 CATATTTCATTTCTCA-TCT
* * * *
38675354 TACATCTCATTTCATCATTT
1 CATATTTCATTTC-TCATCT
38675374 CATATTTCATTTCTCATCT
1 CATATTTCATTTCTCATCT
38675393 CATA-TTCATTTCTCAT
1 CATATTTCATTTCTCAT
38675409 ATTTTCTATT
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
17 1 0.02
18 24 0.41
19 20 0.34
20 13 0.22
21 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.01, T:0.51
Consensus pattern (19 bp):
CATATTTCATTTCTCATCT
Found at i:38683292 original size:21 final size:21
Alignment explanation
Indices: 38683268--38683310 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
38683258 CAAAATCCAT
*
38683268 TTCATCATCTCCTTCTTCTTC
1 TTCATCATCTCCTTCCTCTTC
* *
38683289 TTCATCCTTTCCTTCCTCTTC
1 TTCATCATCTCCTTCCTCTTC
38683310 T
1 T
38683311 CTTTCATGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.40, G:0.00, T:0.53
Consensus pattern (21 bp):
TTCATCATCTCCTTCCTCTTC
Found at i:38696061 original size:12 final size:12
Alignment explanation
Indices: 38696044--38696068 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38696034 TTAGTTTACT
38696044 GCCTAGCACACG
1 GCCTAGCACACG
38696056 GCCTAGCACACG
1 GCCTAGCACACG
38696068 G
1 G
38696069 GCGTGTAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:38697597 original size:75 final size:75
Alignment explanation
Indices: 38697471--38697617 Score: 215
Period size: 75 Copynumber: 2.0 Consensus size: 75
38697461 GAAAACTAGG
* * *
38697471 ATTATTCCTTTATTAATAGTGAAGGCAAATGAAATGTTAAAAAAATGAATTATATTCTTTCCAAA
1 ATTATTCCCTTATTAATAGAGAAGGCAAATGAAAAGTTAAAAAAATGAATTATATTCTTTCCAAA
38697536 AGAATATAGA
66 AGAATATAGA
* * * *
38697546 ATTATTCCCTTATTAATAGAGAAGTCAAATGAAAAGTTCAAAAAA-GAAATTATCTTCTTTCTAA
1 ATTATTCCCTTATTAATAGAGAAGGCAAATGAAAAGTTAAAAAAATG-AATTATATTCTTTCCAA
38697610 AAGAATAT
65 AAGAATAT
38697618 TAATTTACAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
74 1 0.02
75 63 0.98
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.34
Consensus pattern (75 bp):
ATTATTCCCTTATTAATAGAGAAGGCAAATGAAAAGTTAAAAAAATGAATTATATTCTTTCCAAA
AGAATATAGA
Found at i:38697754 original size:81 final size:82
Alignment explanation
Indices: 38697654--38697812 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 82
38697644 CGAAATTAAT
* * * *
38697654 TAATATAACTATTTTTATTAATAAATTTAGTAAAATATATATAATTAATATTTT-ATATTAAT-A
1 TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGA-ATGAATCA
38697717 AATTCATATACTAACAAG
65 AATTCATATACTAACAAG
* * *
38697735 TAATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAA
1 TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGAATGAATCAA
38697800 ATTCATATACTAA
66 ATTCATATACTAA
38697813 TTATATCTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 53 0.77
82 16 0.23
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (82 bp):
TAATATAACTATTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGAATGAATCAA
ATTCATATACTAACAAG
Found at i:38705594 original size:51 final size:50
Alignment explanation
Indices: 38705450--38705744 Score: 317
Period size: 51 Copynumber: 5.8 Consensus size: 50
38705440 ACTTTTATCA
* * *
38705450 TTCGATACACGTAGTAGCCTTCACATAGTACTACATACGTGATCAAG-TT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
* * *
38705499 TTACGGTTCACGTAGTGGCCTTCACATAGTACTACACACATGACCAAAGCTT
1 TT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * *
38705551 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACC-ATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* * *
38705601 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGCTT
* * * * * *
38705653 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACC-ATCATT
1 TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGC-TT
* *
38705703 TATCGGTTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 T-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
38705745 TTCATTGATA
Statistics
Matches: 201, Mismatches: 36, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
49 6 0.03
50 41 0.20
51 146 0.73
52 6 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGCTT
Found at i:38705735 original size:153 final size:151
Alignment explanation
Indices: 38705451--38705740 Score: 368
Period size: 153 Copynumber: 1.9 Consensus size: 151
38705441 CTTTTATCAT
* * * * * * *
38705451 TCGATACACGTAGTAGCCTTCACATAGTACTACATACGTGATCAAGTTTTACGGTTCACGTAGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
**
38705516 GCCTTCACATAGTACTACACACATGACCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTA
66 GCCTTCACATAGTACTACACACATGACCAAA-CTTTTCGGTACACATAGTAGCCTTCACACAGTA
38705581 CTACACATGTGACCATCATTTA
130 CTACACATGTGACCATCATTTA
* *
38705603 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGTACACATAG
* ** * * *
38705667 TAGCCTTCACTTAGTACTACACATGTGACC-ATCATTTATCGGTTCACGTAGTAGCCTTCACACA
64 TAGCCTTCACATAGTACTACACACATGACCAAAC-TTT-TCGGTACACATAGTAGCCTTCACACA
38705731 GTACTACACA
127 GTACTACACA
38705741 CGTGTTCATT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
151 1 0.01
152 43 0.37
153 70 0.60
154 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (151 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
GCCTTCACATAGTACTACACACATGACCAAACTTTTCGGTACACATAGTAGCCTTCACACAGTAC
TACACATGTGACCATCATTTA
Found at i:38705742 original size:102 final size:102
Alignment explanation
Indices: 38705455--38705744 Score: 447
Period size: 102 Copynumber: 2.9 Consensus size: 102
38705445 TATCATTCGA
* * * * * *** *
38705455 TACACGTAGTAGCCTTCACATAGTACTACATACGTGATCAAGTTTTA-CGGTTCACGTAGTGGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGGTTCACGTAGTAGCC
* * *
38705519 TTCACATAGTACTACACACATGACCAAAGCTTTTCGG
66 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
*
38705556 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGGTTCACGTAGTAGCC
38705621 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
66 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
*
38705658 TACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGGTTCACGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGGTTCACGTAGTAGCC
38705723 TTCACACAGTACTACACACGTG
66 TTCACACAGTACTACACACGTG
38705745 TTCATTGATA
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
101 39 0.23
102 134 0.77
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (102 bp):
TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGGTTCACGTAGTAGCC
TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
Found at i:38716586 original size:18 final size:17
Alignment explanation
Indices: 38716560--38716595 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
38716550 ATTTCTGTCG
*
38716560 GTTTGTTTGGTTTTCTAA
1 GTTTCTTTGGTTTT-TAA
38716578 GTTTCTTTGGTTTTTAA
1 GTTTCTTTGGTTTTTAA
38716595 G
1 G
38716596 AACTTAGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.11, C:0.06, G:0.22, T:0.61
Consensus pattern (17 bp):
GTTTCTTTGGTTTTTAA
Found at i:38727062 original size:18 final size:18
Alignment explanation
Indices: 38727022--38727063 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
38727012 TATAAAACTA
38727022 AAAGAAGAATGCAAAGAT
1 AAAGAAGAATGCAAAGAT
* *
38727040 TAAGAGAGAATG-AAAGGT
1 AAAGA-AGAATGCAAAGAT
38727058 AAAGAA
1 AAAGAA
38727064 ATGAAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 1 0.05
18 13 0.65
19 6 0.30
ACGTcount: A:0.60, C:0.02, G:0.26, T:0.12
Consensus pattern (18 bp):
AAAGAAGAATGCAAAGAT
Found at i:38729784 original size:99 final size:103
Alignment explanation
Indices: 38729660--38729906 Score: 304
Period size: 99 Copynumber: 2.4 Consensus size: 103
38729650 TTTCATGTAC
* * * ** *
38729660 TGCCAATGCCATATCCCAGATATGGTCTTTCATGGGAGTTCTCATATCAGTGCC-ATGCCATGCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGCC
*
38729724 CCAGACATGGTCTTACAGGGGACCTCTC-ATCTC-GG-
66 CCAAACATGGTCTTACAGGGGACCTCTCAATCTCAGGA
* * * * * *
38729759 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGCC
*
38729824 CCAAACATGGTCTTACATGGGACCTCTCATGATCTCAAGGA
66 CCAAACATGGTCTTACAGGGGACCTCTCA--ATCTC-AGGA
*
38729865 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
38729907 TTACCCAAAT
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 44 0.35
100 34 0.27
103 5 0.04
105 2 0.02
106 39 0.31
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (103 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGCC
CCAAACATGGTCTTACAGGGGACCTCTCAATCTCAGGA
Found at i:38729786 original size:50 final size:50
Alignment explanation
Indices: 38729611--38729906 Score: 303
Period size: 50 Copynumber: 5.8 Consensus size: 50
38729601 GATAAGAACA
* ** * *
38729611 TGCCAAAGCCATGTCCCAGAA-ATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCA-AACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * ** * *
38729660 TGCCAATGCCATATCCCAGATATGGTCTTTCATGGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
38729710 TGCC-ATGCCATGCCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
* *
38729759 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
*
38729809 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
38729864 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
38729907 TTACCCAAAT
Statistics
Matches: 211, Mismatches: 26, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
48 2 0.01
49 77 0.36
50 87 0.41
53 4 0.02
55 2 0.01
56 39 0.18
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:38731729 original size:21 final size:21
Alignment explanation
Indices: 38731705--38731753 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
38731695 ACCCAGTTCC
**
38731705 AAAGAAGACTTGGGTTAAGTT
1 AAAGAAGACTCAGGTTAAGTT
**
38731726 AAAGACTACTCAGGTTAAGTT
1 AAAGAAGACTCAGGTTAAGTT
38731747 AAAGAAG
1 AAAGAAG
38731754 GGTTGCCTTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (21 bp):
AAAGAAGACTCAGGTTAAGTT
Found at i:38732499 original size:54 final size:53
Alignment explanation
Indices: 38732440--38732593 Score: 166
Period size: 54 Copynumber: 2.9 Consensus size: 53
38732430 CATAGTAAGA
** *
38732440 AGACCATATAGTGTAAGACCTAGCCTGGGACTATGGCATCATATGGGGATACGG
1 AGACCATATAGTGTAAGACCTAGCCTGGGACTATGGCATCATATGGAAAGA-GG
** * ** *
38732494 AGACCATATAGTGTAAGGTCTAGCAGTTTG-CTAAGGCATCATATGGAAAGAGG
1 AGACCATATAGTGTAAGACCTAGC-CTGGGACTATGGCATCATATGGAAAGAGG
* ** *
38732547 AGACCACATAGTGTAAGACCTAGTTTGGGACTATGGCATCATGTGGA
1 AGACCATATAGTGTAAGACCTAGCCTGGGACTATGGCATCATATGGA
38732594 GAAAGAAGAT
Statistics
Matches: 80, Mismatches: 18, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
52 2 0.03
53 37 0.46
54 39 0.49
55 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (53 bp):
AGACCATATAGTGTAAGACCTAGCCTGGGACTATGGCATCATATGGAAAGAGG
Found at i:38733735 original size:19 final size:20
Alignment explanation
Indices: 38733693--38733735 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
38733683 ATTCTAAATG
*
38733693 GAATACTTGAGGTACTTCAA
1 GAATACTTGAGGTAATTCAA
38733713 -AATACTTGAGGTAATT-AA
1 GAATACTTGAGGTAATTCAA
38733731 GAATA
1 GAATA
38733736 AGGGTTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (20 bp):
GAATACTTGAGGTAATTCAA
Found at i:38749900 original size:10 final size:10
Alignment explanation
Indices: 38749885--38749919 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
38749875 AGTCATTGTG
38749885 AAAAAAATTC
1 AAAAAAATTC
38749895 AAAAAAA-TC
1 AAAAAAATTC
38749904 AAAAAAATT-
1 AAAAAAATTC
38749913 AAAAAAA
1 AAAAAAA
38749920 GAGTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:38751185 original size:33 final size:33
Alignment explanation
Indices: 38751148--38751217 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 33
38751138 AGAAAGAGAT
*
38751148 TGAAAAAGAAAA-AGAGCCTG-AAAAGAAATTGAG
1 TGAAAAA-AAAAGAGAGCCTGTAAAAGAAA-CGAG
*
38751181 TGAAAAAAAAAGAGAGTCTGTAAAAGAAACGAG
1 TGAAAAAAAAAGAGAGCCTGTAAAAGAAACGAG
38751214 TGAA
1 TGAA
38751218 GAGAGTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 4 0.12
33 21 0.64
34 8 0.24
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.13
Consensus pattern (33 bp):
TGAAAAAAAAAGAGAGCCTGTAAAAGAAACGAG
Found at i:38753969 original size:19 final size:19
Alignment explanation
Indices: 38753945--38753985 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
38753935 TTTGTTAATA
38753945 AATTGAGTTCATCTTAGTT
1 AATTGAGTTCATCTTAGTT
38753964 AATTGAGTTCATCTTAGTT
1 AATTGAGTTCATCTTAGTT
38753983 AAT
1 AAT
38753986 AACTCATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (19 bp):
AATTGAGTTCATCTTAGTT
Found at i:38754004 original size:18 final size:17
Alignment explanation
Indices: 38753953--38754005 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 17
38753943 TAAATTGAGT
**
38753953 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAA-T-AAC
38753972 TCATCTTAGTTAATAAC
1 TCATCTTAGTTAATAAC
38753989 TCATCTTAGATTAATAA
1 TCATCTTAG-TTAATAA
38754006 ATGAGTTGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.43
Consensus pattern (17 bp):
TCATCTTAGTTAATAAC
Found at i:38762408 original size:50 final size:50
Alignment explanation
Indices: 38762219--38762411 Score: 269
Period size: 50 Copynumber: 3.8 Consensus size: 50
38762209 GATAATAACA
* * * ** *
38762219 TGCCAAAGCCATGTCCCAGACATGGCCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCT-CTCATCTCGG
* ** *
38762270 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACTTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
*
38762320 TGCCAATGCCATGTCCCAAACATAGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
*
38762370 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
38762412 TTACCCCAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 94 0.75
51 32 0.25
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:38766536 original size:18 final size:18
Alignment explanation
Indices: 38766515--38766560 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
38766505 TTTTCACTCA
*
38766515 CTTTTGTAATTTCCTTTT
1 CTTTTGCAATTTCCTTTT
*
38766533 CTTTTGCAATTTCTTTTT
1 CTTTTGCAATTTCCTTTT
*
38766551 CTTTTTCAAT
1 CTTTTGCAAT
38766561 GTCTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.13, C:0.17, G:0.04, T:0.65
Consensus pattern (18 bp):
CTTTTGCAATTTCCTTTT
Found at i:38766565 original size:18 final size:18
Alignment explanation
Indices: 38766515--38766568 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
38766505 TTTTCACTCA
* * *
38766515 CTTTTGTAATTTCCTTTT
1 CTTTTGCAATGTCTTTTT
*
38766533 CTTTTGCAATTTCTTTTT
1 CTTTTGCAATGTCTTTTT
*
38766551 CTTTTTCAATGTCTTTTT
1 CTTTTGCAATGTCTTTTT
38766569 ATTTCATTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.67
Consensus pattern (18 bp):
CTTTTGCAATGTCTTTTT
Found at i:38768136 original size:28 final size:27
Alignment explanation
Indices: 38768095--38768161 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 27
38768085 TTTTGTGATA
* * *
38768095 AATGTGTTTTATTTTATTACATGTTATT
1 AATGTGTCTAATTTTATTACATGCT-TT
38768123 AATGTGTCTAATTTTATTACATGCTTT
1 AATGTGTCTAATTTTATTACATGCTTT
38768150 AATGATGTCTAA
1 AATG-TGTCTAA
38768162 GTCATAGTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 6 0.17
28 29 0.83
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.52
Consensus pattern (27 bp):
AATGTGTCTAATTTTATTACATGCTTT
Found at i:38773226 original size:17 final size:17
Alignment explanation
Indices: 38773196--38773229 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
38773186 CCGTTGAATA
*
38773196 TATTTTTTAATTTTTTT
1 TATTTCTTAATTTTTTT
38773213 TATTTCTT-ATTTTTTT
1 TATTTCTTAATTTTTTT
38773229 T
1 T
38773230 GAACTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TATTTCTTAATTTTTTT
Found at i:38774321 original size:12 final size:12
Alignment explanation
Indices: 38774304--38774328 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38774294 AAAATCTGAT
38774304 TTCAATGTGTAA
1 TTCAATGTGTAA
38774316 TTCAATGTGTAA
1 TTCAATGTGTAA
38774328 T
1 T
38774329 GTAGGGTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTCAATGTGTAA
Found at i:38775065 original size:14 final size:14
Alignment explanation
Indices: 38775046--38775073 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38775036 ATACATTGAC
38775046 TAGATTCATGCATG
1 TAGATTCATGCATG
38775060 TAGATTCATGCATG
1 TAGATTCATGCATG
38775074 GGAATATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (14 bp):
TAGATTCATGCATG
Found at i:38785585 original size:22 final size:22
Alignment explanation
Indices: 38785557--38785600 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38785547 TTTTGAACCA
38785557 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
38785579 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
38785601 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:38792162 original size:47 final size:47
Alignment explanation
Indices: 38792017--38792489 Score: 768
Period size: 47 Copynumber: 10.1 Consensus size: 47
38792007 CCCTTCGGGA
* * * * * * *
38792017 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38792064 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38792110 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38792157 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38792204 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38792251 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38792298 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38792345 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38792392 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38792439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38792486 CTTA
1 CTTA
38792490 CTATCATTTC
Statistics
Matches: 402, Mismatches: 23, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
46 40 0.10
47 362 0.90
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38804942 original size:18 final size:18
Alignment explanation
Indices: 38804921--38804959 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
38804911 AAAGGAAGAC
38804921 AGAAAAAGA-AATCGAAAA
1 AGAAAAAGAGAAT-GAAAA
38804939 AGAAAAAGAGAATGAAAA
1 AGAAAAAGAGAATGAAAA
38804957 AGA
1 AGA
38804960 GCAAAAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAGAATGAAAA
Found at i:38807175 original size:22 final size:21
Alignment explanation
Indices: 38807143--38807184 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
38807133 TTGGTATTTA
38807143 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
38807164 GGAAGTTGGTACGAATTGGTA
1 GGAA-TTGGTACGAAATGGTA
38807185 ATGGTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.31, C:0.05, G:0.36, T:0.29
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:38809517 original size:10 final size:10
Alignment explanation
Indices: 38809502--38809539 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
38809492 CAGCTCTTTC
38809502 AGCTCAATCG
1 AGCTCAATCG
*
38809512 AGCTCATTTC-
1 AGCTCA-ATCG
38809522 AGCTCAATCG
1 AGCTCAATCG
38809532 AGCTCAAT
1 AGCTCAAT
38809540 TTAGCTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.83
11 2 0.08
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATCG
Found at i:38809562 original size:20 final size:20
Alignment explanation
Indices: 38809493--38809561 Score: 90
Period size: 20 Copynumber: 3.5 Consensus size: 20
38809483 AGGTCGTTTC
38809493 AGCTC-TTTCAGCTCAATCG
1 AGCTCATTTCAGCTCAATCG
38809512 AGCTCATTTCAGCTCAATCG
1 AGCTCATTTCAGCTCAATCG
38809532 AGCTCAATTT-AGCTACAATTC-
1 AGCTC-ATTTCAGCT-CAA-TCG
38809553 AGCTCATTT
1 AGCTCATTT
38809562 ATTTTATTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.11
20 27 0.59
21 12 0.26
22 2 0.04
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (20 bp):
AGCTCATTTCAGCTCAATCG
Found at i:38812801 original size:15 final size:16
Alignment explanation
Indices: 38812781--38812818 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
38812771 TTTTCACTTG
38812781 CTTTTTCTTTT-TCAT
1 CTTTTTCTTTTCTCAT
38812796 CTTTTTCTTTTCTCAT
1 CTTTTTCTTTTCTCAT
*
38812812 TTTTTTC
1 CTTTTTC
38812819 ACTCTCTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (16 bp):
CTTTTTCTTTTCTCAT
Found at i:38812850 original size:19 final size:20
Alignment explanation
Indices: 38812826--38812869 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
38812816 TTCACTCTCT
*
38812826 TTTTTTTGAATTTTC-TTTC
1 TTTTTTTCAATTTTCTTTTC
*
38812845 TTTTTTTCATTTTTCTTTTC
1 TTTTTTTCAATTTTCTTTTC
38812865 TTTTT
1 TTTTT
38812870 ATCTCATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTTTCAATTTTCTTTTC
Found at i:38815049 original size:11 final size:11
Alignment explanation
Indices: 38815035--38815063 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
38815025 TTTTTTTGTT
38815035 TTTTTTTCAAA
1 TTTTTTTCAAA
38815046 TTTTTTTCAAA
1 TTTTTTTCAAA
38815057 TTTTTTT
1 TTTTTTT
38815064 TTCACGAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTTTTCAAA
Found at i:38821632 original size:15 final size:15
Alignment explanation
Indices: 38821612--38821669 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
38821602 AATCTCATCA
*
38821612 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
38821627 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
38821642 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
38821656 TTCTCTTTCTCTCT
1 TTCT-TTTCTCTCT
38821670 CAATAGATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
14 9 0.25
15 22 0.61
16 5 0.14
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.72
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:38827050 original size:16 final size:15
Alignment explanation
Indices: 38827011--38827056 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
38827001 GTTCATTTCA
38827011 AGCTCATTTCAGCTC
1 AGCTCATTTCAGCTC
*
38827026 AGCACATTTCCAGCT-
1 AGCTCATTT-CAGCTC
38827041 AGCTCAATTTCAGCTC
1 AGCTC-ATTTCAGCTC
38827057 CACCAGCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (15 bp):
AGCTCATTTCAGCTC
Found at i:38830902 original size:20 final size:20
Alignment explanation
Indices: 38830877--38830914 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
38830867 ATATATATTA
* *
38830877 TGAAATTCATAAAAAAATTT
1 TGAAATACAAAAAAAAATTT
38830897 TGAAATACAAAAAAAAAT
1 TGAAATACAAAAAAAAAT
38830915 ATCGAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
TGAAATACAAAAAAAAATTT
Found at i:38831036 original size:66 final size:66
Alignment explanation
Indices: 38830954--38831086 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
38830944 CTGATTGTTG
38830954 TTTCGAACAAGTGATTCTTCTTTTCCAAGTAATGAATTCATTCTATACGCCACATCTTCAAACCT
1 TTTCGAACAAGTGATTCTTCTTTTCCAAGTAATGAATTCATTCTATACGCCACATCTTCAAACCT
38831019 T
66 T
*
38831020 TTTCGAACAAGTGATTCTTCTTTTCCAAGTAGTGAATTCATTCTATACGCCACATCTTCAAACCT
1 TTTCGAACAAGTGATTCTTCTTTTCCAAGTAATGAATTCATTCTATACGCCACATCTTCAAACCT
38831085 T
66 T
38831086 T
1 T
38831087 CTTTCTTTCG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (66 bp):
TTTCGAACAAGTGATTCTTCTTTTCCAAGTAATGAATTCATTCTATACGCCACATCTTCAAACCT
T
Found at i:38839432 original size:12 final size:12
Alignment explanation
Indices: 38839415--38839457 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
38839405 AAGGAAACCA
38839415 TTTTTTTTGAAT
1 TTTTTTTTGAAT
38839427 TTTTTTTTGAAT
1 TTTTTTTTGAAT
*
38839439 TTTTTTTCGAAT
1 TTTTTTTTGAAT
38839451 TTTTTTT
1 TTTTTTT
38839458 GAAGAAACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:38841121 original size:29 final size:30
Alignment explanation
Indices: 38841071--38841128 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
38841061 TGAGTGATAA
38841071 AAAAAGAGAGAGTGATTCAAAA-GAAAAAG
1 AAAAAGAGAGAGTGATTCAAAATGAAAAAG
*
38841100 AAAAAGAGATGAGTGA-TGAAAATGAAAAA
1 AAAAAGAGA-GAGTGATTCAAAATGAAAAA
38841129 AAGAGTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.62, C:0.02, G:0.24, T:0.12
Consensus pattern (30 bp):
AAAAAGAGAGAGTGATTCAAAATGAAAAAG
Found at i:38852090 original size:63 final size:63
Alignment explanation
Indices: 38851970--38852090 Score: 190
Period size: 63 Copynumber: 1.9 Consensus size: 63
38851960 AAATCAAGAT
*
38851970 TCACTTTCTTCCTTTCAAGAAAATTAAGAAACCAATCTTGGTCCAATTTTGCTTGTTTGAGCG
1 TCACTTTCTTCCTTTCAAGAAAATCAAGAAACCAATCTTGGTCCAATTTTGCTTGTTTGAGCG
** *
38852033 TCACTTTCTTGTTTTCAAGAAAATCAAGAAATCGAATCTTGGTCCAATTTTGC-TGTTT
1 TCACTTTCTTCCTTTCAAGAAAATCAAGAAA-CCAATCTTGGTCCAATTTTGCTTGTTT
38852091 TGAGGCATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 33 0.62
64 20 0.38
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (63 bp):
TCACTTTCTTCCTTTCAAGAAAATCAAGAAACCAATCTTGGTCCAATTTTGCTTGTTTGAGCG
Found at i:38863516 original size:40 final size:40
Alignment explanation
Indices: 38863433--38863653 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 40
38863423 TATTCGAATG
38863433 ATATCCGGGCTAAGTCCCGAAGGCATTT-TGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
38863472 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
38863512 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
38863552 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
38863592 ATATCCGGACTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-A-TTGACT
*
38863632 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38863654 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 42 0.26
40 119 0.73
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:38865673 original size:40 final size:40
Alignment explanation
Indices: 38865626--38865893 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
38865616 GCAAACACAT
* * *
38865626 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38865666 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
38865706 TTGCCTTCAGGTCATAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38865746 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38865786 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38865826 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38865866 TTGCCTTCGGGTCTTAGCCCGAATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
38865894 TCCAATGCTC
Statistics
Matches: 216, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 216 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:38874366 original size:40 final size:40
Alignment explanation
Indices: 38874318--38874584 Score: 484
Period size: 40 Copynumber: 6.7 Consensus size: 40
38874308 GCAAACACAT
* *
38874318 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38874358 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38874398 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38874438 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38874478 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38874517 TTGCCTTCGGGTC-TAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38874556 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGATATATC
38874585 CAATGCTCAT
Statistics
Matches: 219, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
38 15 0.07
39 46 0.21
40 158 0.72
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:38882962 original size:40 final size:40
Alignment explanation
Indices: 38882918--38883225 Score: 544
Period size: 40 Copynumber: 7.7 Consensus size: 40
38882908 GCAAACACAT
* *
38882918 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38882958 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
38882998 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38883038 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38883078 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
38883118 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38883158 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
38883198 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
38883226 TCCAATGCTC
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:38887580 original size:16 final size:17
Alignment explanation
Indices: 38887561--38887593 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
38887551 ATTTAGAGGT
38887561 TAATTAATT-TAATTTA
1 TAATTAATTCTAATTTA
*
38887577 TAATTATTTCTAATTTA
1 TAATTAATTCTAATTTA
38887594 GGCTCGTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TAATTAATTCTAATTTA
Found at i:38888698 original size:5 final size:5
Alignment explanation
Indices: 38888688--38888732 Score: 54
Period size: 5 Copynumber: 8.4 Consensus size: 5
38888678 TTTCGTCATA
*
38888688 TTATT TTATT TTATT TTATTT TTATTT TTATTT TTAGT TTATT TT
1 TTATT TTATT TTATT TTA-TT TTA-TT TTA-TT TTATT TTATT TT
38888733 CTCATTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 20 0.54
6 17 0.46
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:38888712 original size:6 final size:6
Alignment explanation
Indices: 38888691--38888732 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
38888681 CGTCATATTA
*
38888691 TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT TTTTA- GTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
38888733 CTCATTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
5 14 0.42
6 19 0.58
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:38888712 original size:11 final size:11
Alignment explanation
Indices: 38888688--38888732 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
38888678 TTTCGTCATA
38888688 TTATTTTA-TT
1 TTATTTTATTT
38888698 TTATTTTATTT
1 TTATTTTATTT
38888709 TTATTTTTATTT
1 TTA-TTTTATTT
*
38888721 TTAGTTTATTT
1 TTATTTTATTT
38888732 T
1 T
38888733 CTCATTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
10 8 0.25
11 13 0.41
12 11 0.34
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:38897546 original size:19 final size:19
Alignment explanation
Indices: 38897518--38897562 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
38897508 GCAGTGACAA
*
38897518 CCACAGCTATAAAGATTGT
1 CCACAACTATAAAGATTGT
38897537 CCACAACTATAAAGATTGT
1 CCACAACTATAAAGATTGT
38897556 CCACAAC
1 CCACAAC
38897563 ATGCAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.40, C:0.27, G:0.11, T:0.22
Consensus pattern (19 bp):
CCACAACTATAAAGATTGT
Found at i:38906193 original size:73 final size:73
Alignment explanation
Indices: 38906067--38906286 Score: 377
Period size: 73 Copynumber: 3.0 Consensus size: 73
38906057 CTAACTAAGT
* * * * *
38906067 CAAAATAACGTATTCACGTTTCATTAAATCATAAAACTATCATATATTTTTACATGCAATTACAC
1 CAAAATAACATATTCACGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
38906132 TCAACTCG
66 TCAACTCG
38906140 CAAAATAACATATTCACGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
1 CAAAATAACATATTCACGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
*
38906205 TCAACTCA
66 TCAACTCG
*
38906213 CAAAATAACATATTCATGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
1 CAAAATAACATATTCACGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
38906278 TCAACTCG
66 TCAACTCG
38906286 C
1 C
38906287 TTATATATAT
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 139 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.32
Consensus pattern (73 bp):
CAAAATAACATATTCACGTTTCATTAAATCATACAACTAGCATATACTCTTACATGCAATTACAC
TCAACTCG
Found at i:38908362 original size:168 final size:168
Alignment explanation
Indices: 38908082--38908408 Score: 645
Period size: 168 Copynumber: 1.9 Consensus size: 168
38908072 ATAGTGTTCT
38908082 TGGATGTTTTTCTTGAAATACTATGGAGATTTATGGCTTGGGAAATGATAGAACTCAAAGGAATG
1 TGGATGTTTTTCTTGAAATACTATGGAGATTTATGGCTTGGGAAATGATAGAACTCAAAGGAATG
38908147 AAGTTTGGGAATCAAAATTGAATGAGAAGAGCTTTGGAATACAATGGACGTCAAAAGAAAAATAT
66 AAGTTTGGGAATCAAAATTGAATGAGAAGAGCTTTGGAATACAATGGACGTCAAAAGAAAAATAT
38908212 GGAGAAGTGACTAACATAGGTCTTATAAAGATGAAGGG
131 GGAGAAGTGACTAACATAGGTCTTATAAAGATGAAGGG
38908250 TGGATGTTTTTCTTGAAATACTATGGAGATTTATGGCTTGGGAAATGATAGAACTCAAAGGAATG
1 TGGATGTTTTTCTTGAAATACTATGGAGATTTATGGCTTGGGAAATGATAGAACTCAAAGGAATG
*
38908315 AAGTTTGGGAATCAAAATTGAATGAGAAGAGCTTTGGAATGCAATGGACGTCAAAAGAAAAATAT
66 AAGTTTGGGAATCAAAATTGAATGAGAAGAGCTTTGGAATACAATGGACGTCAAAAGAAAAATAT
38908380 GGAGAAGTGACTAACATAGGTCTTATAAA
131 GGAGAAGTGACTAACATAGGTCTTATAAA
38908409 AGGGGAAAAT
Statistics
Matches: 158, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 158 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (168 bp):
TGGATGTTTTTCTTGAAATACTATGGAGATTTATGGCTTGGGAAATGATAGAACTCAAAGGAATG
AAGTTTGGGAATCAAAATTGAATGAGAAGAGCTTTGGAATACAATGGACGTCAAAAGAAAAATAT
GGAGAAGTGACTAACATAGGTCTTATAAAGATGAAGGG
Found at i:38920035 original size:8 final size:8
Alignment explanation
Indices: 38920012--38920046 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
38920002 TATGATATGA
38920012 TTTAAATG
1 TTTAAATG
* *
38920020 ATTGAATG
1 TTTAAATG
38920028 TTTAAATG
1 TTTAAATG
38920036 TTTAAATG
1 TTTAAATG
38920044 TTT
1 TTT
38920047 TCGGTTGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (8 bp):
TTTAAATG
Found at i:38922535 original size:20 final size:20
Alignment explanation
Indices: 38922507--38922545 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38922497 TTTTAAGTGA
* *
38922507 AATATAATGTTATTTAATTT
1 AATAAAATGTTATTAAATTT
38922527 AATAAAATGTTATTAAATT
1 AATAAAATGTTATTAAATT
38922546 AATTAATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
AATAAAATGTTATTAAATTT
Found at i:38927696 original size:16 final size:16
Alignment explanation
Indices: 38927675--38927709 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
38927665 TGGGATTTTC
38927675 TTTTGGACTTTGGATT
1 TTTTGGACTTTGGATT
*
38927691 TTTTGGATTTTGGATT
1 TTTTGGACTTTGGATT
38927707 TTT
1 TTT
38927710 CTGCATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.23, T:0.63
Consensus pattern (16 bp):
TTTTGGACTTTGGATT
Found at i:38930370 original size:20 final size:20
Alignment explanation
Indices: 38930345--38930384 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
38930335 TGTCATTAGG
38930345 GAGAACTCAGTCATGATACT
1 GAGAACTCAGTCATGATACT
38930365 GAGAACTCAGTCATGATACT
1 GAGAACTCAGTCATGATACT
38930385 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (20 bp):
GAGAACTCAGTCATGATACT
Found at i:38945004 original size:6 final size:6
Alignment explanation
Indices: 38944993--38945029 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
38944983 TTGTTTTATG
*
38944993 TTATTT TTATTT TTATTT TTATTT TTATTC TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT T
38945030 CTTTTTCCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:38948352 original size:20 final size:20
Alignment explanation
Indices: 38948301--38948352 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
38948291 TTTATGTTGA
*
38948301 TAAATGGAATGCAAAGTAAG
1 TAAATGGAATGGAAAGTAAG
38948321 TAAATGGAATGGAAAGTAAG
1 TAAATGGAATGGAAAGTAAG
*
38948341 TAGATGGAATGG
1 TAAATGGAATGG
38948353 TTCATAGTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.46, C:0.02, G:0.31, T:0.21
Consensus pattern (20 bp):
TAAATGGAATGGAAAGTAAG
Found at i:38964097 original size:20 final size:20
Alignment explanation
Indices: 38964072--38964110 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
38964062 AACATTCAAA
38964072 ATACCATAATCACAA-CCAAT
1 ATACCATAA-CACAAGCCAAT
38964092 ATACCATAACACAAGCCAA
1 ATACCATAACACAAGCCAA
38964111 ACCATATGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.51, C:0.31, G:0.03, T:0.15
Consensus pattern (20 bp):
ATACCATAACACAAGCCAAT
Found at i:38985576 original size:35 final size:35
Alignment explanation
Indices: 38985537--38985607 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
38985527 GATATTTCCG
*
38985537 TTTGTTTCCTTTGAAAATAGACTCGTTAAGAATTC
1 TTTGTTTCCTTTGAAAATAGACTCATTAAGAATTC
*
38985572 TTTGTTTCCTTTGAATATAGACTCATTAAGAATTC
1 TTTGTTTCCTTTGAAAATAGACTCATTAAGAATTC
38985607 T
1 T
38985608 AAGCATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTGTTTCCTTTGAAAATAGACTCATTAAGAATTC
Found at i:38986219 original size:51 final size:50
Alignment explanation
Indices: 38986092--38986222 Score: 156
Period size: 51 Copynumber: 2.6 Consensus size: 50
38986082 TATTATTAGA
*
38986092 TACGCGTAGTAGCCTT-CACATAGTACTACACACGTGATCAAACTTTCCCG
1 TACGCGTAGTAG-CTTGCACATAGTACTACACACGTGATCAAACTATCCCG
* ** * * * *
38986142 TTCATGTAGTAGCCTGCACATAGTACTACACACGTGTTCGAAGCTATCCGG
1 TACGCGTAGTAGCTTGCACATAGTACTACACACGTGATC-AAACTATCCCG
*
38986193 TACGCATAGTAGCTTGCACATAGTACTACA
1 TACGCGTAGTAGCTTGCACATAGTACTACA
38986223 AATGCGACCT
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.03
50 31 0.47
51 33 0.50
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (50 bp):
TACGCGTAGTAGCTTGCACATAGTACTACACACGTGATCAAACTATCCCG
Found at i:38991974 original size:51 final size:51
Alignment explanation
Indices: 38991852--38992094 Score: 235
Period size: 51 Copynumber: 4.8 Consensus size: 51
38991842 TATCATTCGA
* * * * * *
38991852 TACACGCAGTAGCCTTCACATAGTGCTACACACGTGATCA--AACTTTCTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAA-TATCCGG
* * *
38991902 TTCACGTAGTAGCCTGCACATAGTAATACACACGTGACCATTAATATCCGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCCGG
* * *
38991953 TACACGTAGTAGTCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATTA-ATATCCGG
* * * * * * * *
38992004 TACGCATAGTAGCTTGCACATAGTACTACAAATGCGACCTTTCAT-TCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCCGG
*
38992054 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
38992095 CACTTTCACT
Statistics
Matches: 153, Mismatches: 34, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
50 74 0.48
51 75 0.49
52 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCCGG
Found at i:38991990 original size:101 final size:101
Alignment explanation
Indices: 38991849--38992090 Score: 297
Period size: 101 Copynumber: 2.4 Consensus size: 101
38991839 TATTATCATT
* * * * * * *
38991849 CGATACACGCAGTAGCCTTCACATAGTGCTACACACGTGATC-AAACTTTCTGGTTCACGTAGTA
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAGTA
* *
38991913 GCCTGCACATAGTAATACACACGTGACCATTAATATC
66 GCCTGCACATAGTAATACAAACGCGACCATTAAT-TC
* * * *
38991950 CGATACACGTAGTAGTCTGCACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTA
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAGTA
* * * * *
38992015 GCTTGCACATAGTACTACAAATGCGACCTTTCATTC
66 GCCTGCACATAGTAATACAAACGCGACCATTAATTC
*
38992051 CGGTACACGTAGTAGCCTACACATAGTACTACACACGTGA
1 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGA
38992091 CCATCACTTT
Statistics
Matches: 120, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
101 77 0.64
102 43 0.36
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTACACATAGTA
GCCTGCACATAGTAATACAAACGCGACCATTAATTC
Found at i:38992113 original size:101 final size:98
Alignment explanation
Indices: 38991844--38992114 Score: 265
Period size: 101 Copynumber: 2.7 Consensus size: 98
38991834 TTAAATATTA
* * * * * *
38991844 TCATT-CGATACACGCAGTAGCCTTCACATAGTGCTACACACGTGATCAAACTTTCTGGTTCACG
1 TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGA-CCAACTTTC-CGTTCACA
* *
38991908 TAGTAGCCTGCACATAGTAATACACACGTGACCAT
64 TAGTAGCCTGCACATAGTAATACAAACGCGACCAT
* * * * * * *
38991943 TAATATCCGATACACGTAGTAGTCTGCACATAGTACTACACACGTGATCGAAGCTATCCGGTACG
1 TCAT-TCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGA-CCAA-CTTTCC-GTTCA
* * * *
38992008 CATAGTAGCTTGCACATAGTACTACAAATGCGACCTT
62 CATAGTAGCCTGCACATAGTAATACAAACGCGACCAT
* *
38992045 TCATTCCGGTACACGTAGTAGCCTACACATAGTACTACACACGTGACCATCACTTTCACTTTCAC
1 TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCA--ACTTTC-CGTTCAC
38992110 ATAGT
63 ATAGT
38992115 GACCTACACA
Statistics
Matches: 139, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
99 3 0.02
100 3 0.02
101 91 0.65
102 42 0.30
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (98 bp):
TCATTCCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACCAACTTTCCGTTCACATA
GTAGCCTGCACATAGTAATACAAACGCGACCAT
Found at i:38993983 original size:22 final size:19
Alignment explanation
Indices: 38993958--38993999 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
38993948 TGATAATAAT
38993958 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
38993980 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
38993999 T
1 T
38994000 CAACTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:38995527 original size:3 final size:3
Alignment explanation
Indices: 38995519--38995606 Score: 160
Period size: 3 Copynumber: 29.7 Consensus size: 3
38995509 GGATCCCGAT
38995519 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
*
38995567 GAA GAA GAA GAA GAA GAA GAA -AA AAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
38995607 TCCCATAGAG
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
2 2 0.02
3 81 0.98
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:39003616 original size:20 final size:20
Alignment explanation
Indices: 39003589--39003668 Score: 90
Period size: 20 Copynumber: 4.0 Consensus size: 20
39003579 GATGTGTAAT
39003589 AGAGGCACCGAAGTGCAATC
1 AGAGGCACCGAAGTGCAATC
* * *
39003609 AAAGGCACTGAAGAGCAAAT-
1 AGAGGCACCGAAGTGC-AATC
* * *
39003629 AGAGGGACCAAAGTGCAAAC
1 AGAGGCACCGAAGTGCAATC
39003649 AGAGGCACCGAAGTGCAATC
1 AGAGGCACCGAAGTGCAATC
39003669 CCATACAAGC
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
19 2 0.04
20 41 0.89
21 3 0.07
ACGTcount: A:0.41, C:0.21, G:0.29, T:0.09
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAATC
Found at i:39003633 original size:40 final size:40
Alignment explanation
Indices: 39003586--39003666 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
39003576 AAAGATGTGT
* * *
39003586 AATAGAGGCACCGAAGTGCAATCAAAGGCACTGAAGAGCA
1 AATAGAGGCACCAAAGTGCAAACAAAGGCACCGAAGAGCA
* * *
39003626 AATAGAGGGACCAAAGTGCAAACAGAGGCACCGAAGTGCA
1 AATAGAGGCACCAAAGTGCAAACAAAGGCACCGAAGAGCA
39003666 A
1 A
39003667 TCCCATACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.28, T:0.09
Consensus pattern (40 bp):
AATAGAGGCACCAAAGTGCAAACAAAGGCACCGAAGAGCA
Found at i:39007290 original size:20 final size:20
Alignment explanation
Indices: 39007267--39007333 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
39007257 AGGCAAAAAT
39007267 GTGCAATCAGAGGCACCGAA
1 GTGCAATCAGAGGCACCGAA
* *
39007287 GTGCAAACA-AGGGCACCAAA
1 GTGCAATCAGA-GGCACCGAA
**
39007307 GTATAAAT-AGAGGCACCGAA
1 GT-GCAATCAGAGGCACCGAA
39007327 GTGCAAT
1 GTGCAAT
39007334 TCTGTACAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
19 4 0.11
20 29 0.81
21 3 0.08
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.12
Consensus pattern (20 bp):
GTGCAATCAGAGGCACCGAA
Found at i:39014906 original size:81 final size:80
Alignment explanation
Indices: 39014720--39014953 Score: 271
Period size: 81 Copynumber: 2.9 Consensus size: 80
39014710 ACACCCTCGA
* * * * * *
39014720 AGGGTAAAATGACTGA-AATGCCCCTATAGGGTAAAATGA-TCGAAATACCCCCGTAGGGTAGAA
1 AGGGTAAAATGAC-CATAATACCCCTGTA-GGTAAAATGACT-GTAATACCCCTGTAGGGTAAAA
* *
39014783 T-ACCGAAATATCCTCAT
63 TGACCGTAATGTCCTCAT
* *
39014800 AGGGTAAAA-AACCATAATACCCCTGTAGGTTAAAATGACTGTAATGCCCCTGTAGGGTAAAATG
1 AGGGTAAAATGACCATAATACCCCTGTAGG-TAAAATGACTGTAATACCCCTGTAGGGTAAAATG
*
39014864 ACTGTAATGTCC-CTAT
65 ACCGTAATGTCCTC-AT
*
39014880 AGGGTAAAATGACCATAATACCCCTGTATGGTAAAATGACTGTAATACCCTTGTAGGGTAAAATG
1 AGGGTAAAATGACCATAATACCCCTGTA-GGTAAAATGACTGTAATACCCCTGTAGGGTAAAATG
39014945 ACCGTAATG
65 ACCGTAATG
39014954 CCTTGGTGAG
Statistics
Matches: 132, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.02
79 40 0.30
80 30 0.23
81 57 0.43
82 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (80 bp):
AGGGTAAAATGACCATAATACCCCTGTAGGTAAAATGACTGTAATACCCCTGTAGGGTAAAATGA
CCGTAATGTCCTCAT
Found at i:39014951 original size:27 final size:27
Alignment explanation
Indices: 39014720--39014952 Score: 220
Period size: 27 Copynumber: 8.7 Consensus size: 27
39014710 ACACCCTCGA
* * * *
39014720 AGGGTAAAATGACTGAAATGCCCCTAT
1 AGGGTAAAATGACCGTAATACCCCTGT
* * *
39014747 AGGGTAAAATGATCGAAATACCCCCGT
1 AGGGTAAAATGACCGTAATACCCCTGT
* * * *
39014774 AGGGTAGAAT-ACCGAAATA-TCCTCAT
1 AGGGTAAAATGACCGTAATACCCCT-GT
* *
39014800 AGGGTAAAA-AACCATAATACCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
* * *
39014826 AGGTTAAAATGACTGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
* ** *
39014853 AGGGTAAAATGACTGTAATGTCCCTAT
1 AGGGTAAAATGACCGTAATACCCCTGT
*
39014880 AGGGTAAAATGACCATAATACCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
* * *
39014907 ATGGTAAAATGACTGTAATACCCTTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
39014934 AGGGTAAAATGACCGTAAT
1 AGGGTAAAATGACCGTAAT
39014953 GCCTTGGTGA
Statistics
Matches: 168, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.01
26 33 0.20
27 133 0.79
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATACCCCTGT
Found at i:39015048 original size:24 final size:24
Alignment explanation
Indices: 39014992--39015073 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
39014982 CTCTAGGTCA
* * * *
39014992 AATGATTGTTTTGTCTGTG-GTTA
1 AATGACTGATTTGTCTGTGATTTG
39015015 AATGACTGATTTGTCTGTG-TTTGG
1 AATGACTGATTTGTCTGTGATTT-G
*
39015039 TATGACTGATTTGTCTGTGATTTG
1 AATGACTGATTTGTCTGTGATTTG
39015063 AATGACTGATT
1 AATGACTGATT
39015074 CTGAGCATGG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
23 19 0.37
24 29 0.57
25 3 0.06
ACGTcount: A:0.20, C:0.07, G:0.26, T:0.48
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGATTTG
Found at i:39015185 original size:27 final size:26
Alignment explanation
Indices: 39015137--39015207 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
39015127 ATGGAGGAAG
* *
39015137 TACTA-TACTGGTGGCTCTGCCAGA-A
1 TACTATTACTGGTAGCT-TGCCACATA
*
39015162 TCACTGTTACTGGTAGCTTAGCCACATA
1 T-ACTATTACTGGTAGCTT-GCCACATA
*
39015190 TACTATTACTGGCAGCTT
1 TACTATTACTGGTAGCTT
39015208 TGCTACGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 30 0.81
28 2 0.05
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACTATTACTGGTAGCTTGCCACATA
Found at i:39015286 original size:32 final size:32
Alignment explanation
Indices: 39015242--39015459 Score: 231
Period size: 32 Copynumber: 6.8 Consensus size: 32
39015232 TTTGCTGCGA
**
39015242 TGCTACTGATGGCTTTGTGTAGATCATAGT-AC
1 TGCTACTGATGGCTTTGTGCCGATCATA-TCAC
* * * *
39015274 CGTTACTGATGGCTGTGTTCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* *
39015306 TGCTACTGATGGCTTTGTGCCGATCATGTTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* * * *
39015338 AGTTACTGATGGCTGTGTGCCGGTCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* * *
39015370 TGCTACTGATGGATTTGTGCCGATCATGTTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* * * *
39015402 CGTTACTAATGGCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATCAC
* *
39015434 TGCTACTGATGGCTTTATGCCAATCA
1 TGCTACTGATGGCTTTGTGCCGATCA
39015460 CATTATTGTA
Statistics
Matches: 147, Mismatches: 38, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
31 1 0.01
32 146 0.99
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCGATCATATCAC
Found at i:39015343 original size:64 final size:64
Alignment explanation
Indices: 39015242--39015459 Score: 339
Period size: 64 Copynumber: 3.4 Consensus size: 64
39015232 TTTGCTGCGA
** *
39015242 TGCTACTGATGGCTTTGTGTAGATCATAG-TACCGTTACTGATGGCTGTGTTCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCAT-GTTACCGTTACTGATGGCTGTGTGCCGATCATATCAC
* *
39015306 TGCTACTGATGGCTTTGTGCCGATCATGTTACAGTTACTGATGGCTGTGTGCCGGTCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGATGGCTGTGTGCCGATCATATCAC
* *
39015370 TGCTACTGATGGATTTGTGCCGATCATGTTACCGTTACTAATGGCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGATGGCTGTGTGCCGATCATATCAC
* *
39015434 TGCTACTGATGGCTTTATGCCAATCA
1 TGCTACTGATGGCTTTGTGCCGATCA
39015460 CATTATTGTA
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
63 1 0.01
64 140 0.99
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (64 bp):
TGCTACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGATGGCTGTGTGCCGATCATATCAC
Found at i:39015558 original size:26 final size:26
Alignment explanation
Indices: 39015529--39015581 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
39015519 GGCTCTTAGC
* *
39015529 CATTCTGACTACTGGCAGCTCTGCTG
1 CATTATGACTACTGGCAGCTATGCTG
*
39015555 CATTATTACTACTGGCAGCTATGCTG
1 CATTATGACTACTGGCAGCTATGCTG
39015581 C
1 C
39015582 GATATTAGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATGCTG
Found at i:39015730 original size:28 final size:28
Alignment explanation
Indices: 39015697--39015750 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
39015687 CATACTGATA
*
39015697 CTGTATCGGGCTTAA-GCCCACACTGTTT
1 CTGTATCAGGC-TAAGGCCCACACTGTTT
*
39015725 CTGTATTAGGCTAAGGCCCACACTGT
1 CTGTATCAGGCTAAGGCCCACACTGT
39015751 ACTGTTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (28 bp):
CTGTATCAGGCTAAGGCCCACACTGTTT
Found at i:39025601 original size:19 final size:18
Alignment explanation
Indices: 39025577--39025614 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
39025567 TGGAAATGAA
39025577 TCATTTCTCATTTTCATTT
1 TCATTTCT-ATTTTCATTT
*
39025596 TCATTTCTATTTTTATTT
1 TCATTTCTATTTTCATTT
39025614 T
1 T
39025615 GAGAAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (18 bp):
TCATTTCTATTTTCATTT
Found at i:39039341 original size:47 final size:47
Alignment explanation
Indices: 39039290--39039794 Score: 877
Period size: 47 Copynumber: 10.7 Consensus size: 47
39039280 TTAGGATTCT
* * *
39039290 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
39039337 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039384 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039431 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039478 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
39039525 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039572 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039619 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
39039666 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
39039713 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
39039760 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
39039795 TCCCAAAGGG
Statistics
Matches: 439, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 438 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:39039969 original size:37 final size:37
Alignment explanation
Indices: 39039913--39039991 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
39039903 CCGAGCTCTA
* * *
39039913 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
39039950 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
39039987 AAGAC
1 AAGAC
39039992 TTCCTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:39041449 original size:40 final size:40
Alignment explanation
Indices: 39041206--39041437 Score: 320
Period size: 40 Copynumber: 5.8 Consensus size: 40
39041196 GAGAATTGAG
*
39041206 AGTGATATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
39041246 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
39041286 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
39041326 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
39041366 AGTGATATAACCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
39041406 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
39041438 ATCATGCTGG
Statistics
Matches: 164, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:39045336 original size:47 final size:47
Alignment explanation
Indices: 39045277--39045521 Score: 351
Period size: 47 Copynumber: 5.3 Consensus size: 47
39045267 TTAGGATTCT
* * * *
39045277 TGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATAGCCGA
39045324 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
39045371 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
39045418 TGTGATGAATGTGAAAGTGTATATATGTGAT-A-GCCTAGTAGCCGA
1 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
39045463 GTGTGATGAATGTGAAAGTGTATATA-GTG-TGAATGCCT-A-AGCCGA
1 -TGTGATGAATGTGAAAGTGTATATATGTGAT-AAGGCCTAATAGCCGA
39045508 TGTGATGAATGTGA
1 TGTGATGAATGTGA
39045522 NNNNNNNNNN
Statistics
Matches: 185, Mismatches: 8, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
44 15 0.08
45 20 0.11
46 28 0.15
47 122 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
Found at i:39058037 original size:39 final size:39
Alignment explanation
Indices: 39057992--39058068 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
39057982 CTAATTAGAA
39057992 AGAAATTTCAATTAATCAACCTAAAGTCAATTGCTCTTT
1 AGAAATTTCAATTAATCAACCTAAAGTCAATTGCTCTTT
* *
39058031 AGAAATTTCAATTAATCAACCTAAAGTCAGTTGGTCTT
1 AGAAATTTCAATTAATCAACCTAAAGTCAATTGCTCTT
39058069 ACTCTCGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (39 bp):
AGAAATTTCAATTAATCAACCTAAAGTCAATTGCTCTTT
Done.