Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 128 of 208
Found at i:42115634 original size:18 final size:16
Alignment explanation
Indices: 42115600--42115644 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 16
42115590 AAATTGAGAG
42115600 AAGAAAAATGAAAGAAA
1 AAGAAAAA-GAAAGAAA
42115617 AAGAAAAAGAAATCGAAA
1 AAGAAAAAGAAA--GAAA
42115635 AAGAAAAAGA
1 AAGAAAAAGA
42115645 GAGTGAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 8 0.31
18 14 0.54
ACGTcount: A:0.76, C:0.02, G:0.18, T:0.04
Consensus pattern (16 bp):
AAGAAAAAGAAAGAAA
Found at i:42115641 original size:5 final size:6
Alignment explanation
Indices: 42115610--42115644 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
42115600 AAGAAAAATG
**
42115610 AAAGAA AAAGAA AAAGAA ATCGAA AAAGAA AAAGA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
42115645 GAGTGAAAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:42116878 original size:27 final size:27
Alignment explanation
Indices: 42116848--42116916 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
42116838 GGGTAAAACA
*
42116848 GTCATTTTATCCTATAG-GGGTATTTTG
1 GTCATTTTATCCT-TAGTGGGTATTTCG
* *
42116875 GTCATTTTACCCTTTGTGGGTATTTCG
1 GTCATTTTATCCTTAGTGGGTATTTCG
*
42116902 GTAATTTTTATCCTT
1 GTCA-TTTTATCCTT
42116917 GGAGGTAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.06
27 24 0.69
28 9 0.26
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (27 bp):
GTCATTTTATCCTTAGTGGGTATTTCG
Found at i:42117986 original size:13 final size:13
Alignment explanation
Indices: 42117968--42118002 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
42117958 CTGATTGCAG
*
42117968 AAGAAAAGAGGTA
1 AAGAAAAAAGGTA
42117981 AAGAAAAAAGGTA
1 AAGAAAAAAGGTA
42117994 AAGAAAAAA
1 AAGAAAAAA
42118003 ATAAATGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (13 bp):
AAGAAAAAAGGTA
Found at i:42118450 original size:25 final size:25
Alignment explanation
Indices: 42118416--42118469 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
42118406 TGAACCTCTG
*
42118416 ACCTCCTTACTACACCTGTGAT-GCC
1 ACCTCCTTACCACACCTGTG-TCGCC
*
42118441 ACCTCCTTACCACACTTGTGTCGCC
1 ACCTCCTTACCACACCTGTGTCGCC
42118466 ACCT
1 ACCT
42118470 TGCCACTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.19, C:0.43, G:0.11, T:0.28
Consensus pattern (25 bp):
ACCTCCTTACCACACCTGTGTCGCC
Found at i:42121300 original size:27 final size:27
Alignment explanation
Indices: 42121264--42121317 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
42121254 ATGTTTTATT
*
42121264 TTAATGCATG-CATTTAATATGTCTTAG
1 TTAATACATGTCA-TTAATATGTCTTAG
*
42121291 TTAATACATGTCATTAATTTGTCTTAG
1 TTAATACATGTCATTAATATGTCTTAG
42121318 CTTATTGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (27 bp):
TTAATACATGTCATTAATATGTCTTAG
Found at i:42128124 original size:20 final size:20
Alignment explanation
Indices: 42128099--42128153 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
42128089 AACTAAAGTA
42128099 AGCTAAAAATGAGCTCATTG
1 AGCTAAAAATGAGCTCATTG
* *
42128119 AGCTAAGAACGAGCTCATTG
1 AGCTAAAAATGAGCTCATTG
*
42128139 AGCTAAAATTGAGCT
1 AGCTAAAAATGAGCT
42128154 GAATTGAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (20 bp):
AGCTAAAAATGAGCTCATTG
Found at i:42143864 original size:23 final size:23
Alignment explanation
Indices: 42143833--42143883 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
42143823 ACCTACTTTC
* *
42143833 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
42143856 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
42143879 TTACA
1 TTACA
42143884 TTCGGTTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:42144904 original size:11 final size:11
Alignment explanation
Indices: 42144884--42144913 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
42144874 ATTAAAGTTG
*
42144884 AGAGAATTGAA
1 AGAGATTTGAA
42144895 AGAGATTTGAA
1 AGAGATTTGAA
42144906 AGAGATTT
1 AGAGATTT
42144914 TTTATAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (11 bp):
AGAGATTTGAA
Found at i:42145489 original size:320 final size:324
Alignment explanation
Indices: 42144911--42145534 Score: 917
Period size: 320 Copynumber: 1.9 Consensus size: 324
42144901 TTGAAAGAGA
* * *
42144911 TTTTTTATAGAGAATTGAGAGTGATGTAACAGGTCGTTTTCAGTGGAGTTGAAAACAATGGTTTT
1 TTTTTTATAAAGAATTGAGAGTGATGTAACAGGTCGATTTCAGTGGAGTTGAAAACAATGGTTTC
* *
42144976 AGGACCACGATTCTAAAAATGATTCCATAATTATTATTTATTTTATACGAGTTAGATATCATTTC
66 AGGACCACAATTCTAAAAATGATTCCATAATTATTATTTATTTTATACGAGTTAAATATCATTTC
* * *
42145041 TAGTAAATCTTGATTTGATAATTTTTTGCTAATTGAATAAATAGTTAAGTACCAGAGGTTCTCCC
131 TAGTAAATCTTGACTTGATAATTTTTTGCTAATTGAACAAATAGTTAAGTACAAGAGGTTCTCCC
* * *
42145106 CGAAAGTCAAGTCGTTTTGGGAAATGAGGTATCGAGACCTCATTTCTGTAAACTACAC-AAAAAA
196 CAAAAGTCAAGTCGTTTCGGGAAATGAGATATCGAGACCTCATTTCTGTAAACTACACAAAAAAA
*
42145170 TATTTTTATTAAATATTTATGGATTTACTAAACAGGTATATTGAGAGAGAATTGCAAGAGATTT
261 TATTTTTATTAAATATTTATGGATTTAATAAACAGGTATATTGAGAGAGAATTGCAAGAGATTT
*
42145234 TTTTTTATAAAGAATTGAGAGTGATGTAACAGGTC-ATTT-AGTGGAGTTGAAAACAGTGGTTTC
1 TTTTTTATAAAGAATTGAGAGTGATGTAACAGGTCGATTTCAGTGGAGTTGAAAACAATGGTTTC
*
42145297 AGGACCACAATTCTAACAATGATTCCAT-ATTATTATTTATTTTATACGAGTTAAATAT-AGTTT
66 AGGACCACAATTCTAAAAATGATTCCATAATTATTATTTATTTTATACGAGTTAAATATCA-TTT
*
42145360 CTAGTAAAAT-TT-ACTTGATAATTTTTTTGCTAATTGAACAAATAGTTAAGTATAAGAGGTTCA
130 CTAGT-AAATCTTGACTTGATAA-TTTTTTGCTAATTGAACAAATAGTTAAGTACAAGAGGTTC-
* * * * * *
42145423 T-CCCAAAAGTCAAGTGGTTTCGGGAAATGAGATAT-TAGACCCTCGTTTTTGTAAATTGA-GCA
192 TCCCCAAAAGTCAAGTCGTTTCGGGAAATGAGATATCGAGA-CCTCATTTCTGTAAACT-ACACA
* *
42145485 AAAAAATATTTTTATTAAATATTTATGGATTTAATATAGAGGTATATTGA
255 AAAAAATATTTTTATTAAATATTTATGGATTTAATAAACAGGTATATTGA
42145535 AGTTCAGTTC
Statistics
Matches: 271, Mismatches: 23, Indels: 16
0.87 0.07 0.05
Matches are distributed among these distances:
319 12 0.04
320 121 0.45
321 101 0.37
322 3 0.01
323 34 0.13
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (324 bp):
TTTTTTATAAAGAATTGAGAGTGATGTAACAGGTCGATTTCAGTGGAGTTGAAAACAATGGTTTC
AGGACCACAATTCTAAAAATGATTCCATAATTATTATTTATTTTATACGAGTTAAATATCATTTC
TAGTAAATCTTGACTTGATAATTTTTTGCTAATTGAACAAATAGTTAAGTACAAGAGGTTCTCCC
CAAAAGTCAAGTCGTTTCGGGAAATGAGATATCGAGACCTCATTTCTGTAAACTACACAAAAAAA
TATTTTTATTAAATATTTATGGATTTAATAAACAGGTATATTGAGAGAGAATTGCAAGAGATTT
Found at i:42145920 original size:10 final size:10
Alignment explanation
Indices: 42145887--42145914 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
42145877 ATGGTATGTA
42145887 ATTTTTATTC
1 ATTTTTATTC
42145897 ATTTTTATTC
1 ATTTTTATTC
42145907 ATTTTTAT
1 ATTTTTAT
42145915 GTATTTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.71
Consensus pattern (10 bp):
ATTTTTATTC
Found at i:42151475 original size:23 final size:22
Alignment explanation
Indices: 42151423--42151475 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
42151413 TCCACGTCTT
*
42151423 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
42151445 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
42151468 TTTCTTTT
1 TTTCTTTT
42151476 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:42154551 original size:41 final size:41
Alignment explanation
Indices: 42154490--42154647 Score: 154
Period size: 41 Copynumber: 3.9 Consensus size: 41
42154480 TGAAAATAAG
* * *
42154490 ATGTTTCAGACTTTACGTCTAGGAGGCTTGATACCGATGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTAATACCGATGAA
* *
42154531 ATGTTTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTAATACCGATGAA
* ** ** ** *
42154572 TTACTTCAGACTTTATGTCTAGCAGGCTTTGTGTCGGTGAA
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTAATACCGATGAA
* * * * *
42154613 ATGTATCAGGCTTTGTGCCTAGCAGGCTTTATACC
1 ATGTTTCAGACTTTATGTCTAGCAGGCTTAATACC
42154648 AGTGTTTTAT
Statistics
Matches: 96, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
ATGTTTCAGACTTTATGTCTAGCAGGCTTAATACCGATGAA
Found at i:42161508 original size:27 final size:27
Alignment explanation
Indices: 42161422--42161493 Score: 126
Period size: 27 Copynumber: 2.7 Consensus size: 27
42161412 AACTGATATG
*
42161422 AAATGAATGTTATGCCCCCACGTGGTA
1 AAATGACTGTTATGCCCCCACGTGGTA
*
42161449 AAATGACTATTATGCCCCCACGTGGTA
1 AAATGACTGTTATGCCCCCACGTGGTA
42161476 AAATGACTGTTATGCCCC
1 AAATGACTGTTATGCCCC
42161494 TATGTTATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATGACTGTTATGCCCCCACGTGGTA
Found at i:42164094 original size:20 final size:20
Alignment explanation
Indices: 42164069--42164128 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
42164059 GCTTGTACAG
*
42164069 GATTGCACTTCGGTGCCTCT
1 GATTGCACTTCAGTGCCTCT
* *
42164089 GATTGCACTTTAGTGCCCCT
1 GATTGCACTTCAGTGCCTCT
*
42164109 GATTACACTTCAGTGCCTCT
1 GATTGCACTTCAGTGCCTCT
42164129 ATTAGCATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.30, G:0.20, T:0.35
Consensus pattern (20 bp):
GATTGCACTTCAGTGCCTCT
Found at i:42164140 original size:20 final size:21
Alignment explanation
Indices: 42164081--42164140 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
42164071 TTGCACTTCG
42164081 GTGCCTCTGATT-GCACTTT-A
1 GTGCCTCTGATTAGCA-TTTCA
* *
42164101 GTGCCCCTGATTA-CACTTCA
1 GTGCCTCTGATTAGCATTTCA
42164121 GTGCCTCT-ATTAGCATTTCA
1 GTGCCTCTGATTAGCATTTCA
42164141 ATGATCTATG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
19 6 0.18
20 27 0.82
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (21 bp):
GTGCCTCTGATTAGCATTTCA
Found at i:42166238 original size:33 final size:33
Alignment explanation
Indices: 42166166--42166241 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
42166156 ATGTTTGAAT
** *
42166166 GTAAGACCATAGTTGGGCTATGGCATTTAAATG
1 GTAAGACCATAACTGGGCTATGGCACTTAAATG
** *
42166199 AAAAGACCATAACTGGGTTATGGCACCTTAAA-G
1 GTAAGACCATAACTGGGCTATGGCA-CTTAAATG
42166232 GTAAGACCAT
1 GTAAGACCAT
42166242 GGTTGGACCA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
33 29 0.85
34 5 0.15
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.25
Consensus pattern (33 bp):
GTAAGACCATAACTGGGCTATGGCACTTAAATG
Found at i:42174905 original size:43 final size:43
Alignment explanation
Indices: 42174854--42175091 Score: 254
Period size: 43 Copynumber: 5.6 Consensus size: 43
42174844 ATTCATACAG
* * *
42174854 GGAATCAGCACATAGCAACCCCTTTCACAATTAAGGATTCGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAGATACGGT
* ** *
42174897 GGAATCAGCACTTAGCAACCACCTTT-A-TATTCAGTGATATGG-
1 GGAATCAGCACTTAGCAACC-CCTTTCACAATT-AAAGATACGGT
* * *
42174939 GGAATCAGCACTTAGCGACCCCATTCACAATTAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAGATACGGT
* * * *
42174982 GGATTCAGCACATAGCAACCACCTTT-A-TATTCAACGATACGG-
1 GGAATCAGCACTTAGCAACC-CCTTTCACAATT-AAAGATACGGT
*
42175024 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAGATACGGT
*
42175067 GGAATCAGCACTTAGCAACCACTTT
1 GGAATCAGCACTTAGCAACCCCTTT
42175092 TAGAGTCAAT
Statistics
Matches: 159, Mismatches: 26, Indels: 20
0.78 0.13 0.10
Matches are distributed among these distances:
41 9 0.06
42 59 0.37
43 82 0.52
44 9 0.06
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACAATTAAAGATACGGT
Found at i:42174966 original size:85 final size:85
Alignment explanation
Indices: 42174809--42175131 Score: 423
Period size: 85 Copynumber: 3.8 Consensus size: 85
42174799 ATCCGTTACT
* * * * * *
42174809 CGGTGGATTCAGCACTTAGCAACCACC-ATAAATTCATTCATACAGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACAGGGAATCAGCACTTAGCAAC
** *
42174873 CCCTTTCACAATTAAGGATT
66 CCCTTTCACAATTAAAAATA
* ** *
42174893 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATATGGGGAATCAGCACTTAGCGAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACAGGGAATCAGCACTTAGCAAC
*
42174958 CCCATTCACAATTAAAAATA
66 CCCTTTCACAATTAAAAATA
* * * *
42174978 CGGTGGATTCAGCACATAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACAGGGAATCAGCACTTAGCAAC
42175043 CCCTTTCACAATTAAAAATA
66 CCCTTTCACAATTAAAAATA
* * * * **
42175063 CGGTGGAATCAGCACTTAGCAACCACTTTTAGAGTCAATAATTTAGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACAGGGAATCAGCACTTAGCAAC
42175128 CCCT
66 CCCT
42175132 CAGGGAATCA
Statistics
Matches: 208, Mismatches: 30, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
84 26 0.12
85 182 0.88
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACAGGGAATCAGCACTTAGCAAC
CCCTTTCACAATTAAAAATA
Found at i:42175114 original size:170 final size:169
Alignment explanation
Indices: 42174809--42175130 Score: 466
Period size: 170 Copynumber: 1.9 Consensus size: 169
42174799 ATCCGTTACT
* *
42174809 CGGTGGATTCAGCACTTAGCAACCACCATAAATTCATTCATACAGGGAATCAGCACATAGCAACC
1 CGGTGGATTCAGCACATAGCAACCACCATAAATTCATACATACAGGGAATCAGCACATAGCAACC
** * * * * * *
42174874 CCTTTCACAATTAAGGATTCGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATATGG
66 CCTTTCACAATTAAAAATACGGTGGAATCAGCACTTAGCAACCACCTTTAGAGTCAATAATATAG
*
42174939 GGAATCAGCACTTAGCGACCCCATTCACAATTAAAAATA
131 GGAATCAGCACTTAGCAACCCCATTCACAATTAAAAATA
* * * *
42174978 CGGTGGATTCAGCACATAGCAACCACCTTTATATTCA-ACGATACGGGGAATCAGCACTTAGCAA
1 CGGTGGATTCAGCACATAGCAACCACC-ATAAATTCATAC-ATACAGGGAATCAGCACATAGCAA
* *
42175042 CCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTTAGCAACCACTTTTAGAGTCAATAATTT
64 CCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTTAGCAACCACCTTTAGAGTCAATAATAT
42175107 AGGGAATCAGCACTTAGCAACCCC
129 AGGGAATCAGCACTTAGCAACCCC
42175131 TCAGGGAATC
Statistics
Matches: 134, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
169 27 0.20
170 107 0.80
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (169 bp):
CGGTGGATTCAGCACATAGCAACCACCATAAATTCATACATACAGGGAATCAGCACATAGCAACC
CCTTTCACAATTAAAAATACGGTGGAATCAGCACTTAGCAACCACCTTTAGAGTCAATAATATAG
GGAATCAGCACTTAGCAACCCCATTCACAATTAAAAATA
Found at i:42175136 original size:26 final size:26
Alignment explanation
Indices: 42175107--42175157 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
42175097 TCAATAATTT
42175107 AGGGAATCAGCACTTAGCAACCCCTC
1 AGGGAATCAGCACTTAGCAACCCCTC
*
42175133 AGGGAATCAGTACTTAGCAACCCCT
1 AGGGAATCAGCACTTAGCAACCCCT
42175158 TTTTATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (26 bp):
AGGGAATCAGCACTTAGCAACCCCTC
Found at i:42184135 original size:8 final size:8
Alignment explanation
Indices: 42184122--42184149 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
42184112 CTCTACCAGG
42184122 TTTTTTCT
1 TTTTTTCT
42184130 TTTTTTCT
1 TTTTTTCT
42184138 TTTTTTCT
1 TTTTTTCT
42184146 TTTT
1 TTTT
42184150 GCTTTAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTCT
Found at i:42187771 original size:23 final size:23
Alignment explanation
Indices: 42187739--42187782 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
42187729 AAATCCCGAG
* *
42187739 AGTTATTAATATTTATTTATAAT
1 AGTTACTAATATTTAATTATAAT
*
42187762 AGTTACTAATGTTTAATTATA
1 AGTTACTAATATTTAATTATA
42187783 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (23 bp):
AGTTACTAATATTTAATTATAAT
Found at i:42192691 original size:25 final size:25
Alignment explanation
Indices: 42192655--42192716 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 25
42192645 TCTAGACGCT
**
42192655 AGACACAA-TTAAGGTGTCTGAACTA
1 AGAC-CAATTTAAGGTGTCAAAACTA
**
42192680 AGACCAATTTAATTTGTCAAAACTA
1 AGACCAATTTAAGGTGTCAAAACTA
*
42192705 AGTCCAATTTAA
1 AGACCAATTTAA
42192717 TTCATCTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (25 bp):
AGACCAATTTAAGGTGTCAAAACTA
Found at i:42192717 original size:25 final size:25
Alignment explanation
Indices: 42192675--42192746 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
42192665 AAGGTGTCTG
**
42192675 AACTAAGACCAATTTAATTTGTCAA
1 AACTAAGACCAATTTAATTCATCAA
* *
42192700 AACTAAGTCCAATTTAATTCATCTA
1 AACTAAGACCAATTTAATTCATCAA
* *
42192725 AACTAAAACCAATTTAAATCAT
1 AACTAAGACCAATTTAATTCAT
42192747 ATATTAAAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.46, C:0.18, G:0.04, T:0.32
Consensus pattern (25 bp):
AACTAAGACCAATTTAATTCATCAA
Found at i:42209667 original size:25 final size:25
Alignment explanation
Indices: 42209605--42209717 Score: 81
Period size: 25 Copynumber: 4.5 Consensus size: 25
42209595 ACTGAATTTG
*
42209605 AGACACAA-TTAAGGTGTCTAGACCCT-
1 AGAC-CAATTTAAGGTGTCTA-A-ACTA
*
42209631 AGACACAA-TTAAGGTGTCTGAACTA
1 AGAC-CAATTTAAGGTGTCTAAACTA
** * *
42209656 AGACCAATTTAATTTATCAAAACTA
1 AGACCAATTTAAGGTGTCTAAACTA
* *
42209681 AGTCCAATTTAA-TTCGTCTAAACTA
1 AGACCAATTTAAGGT-GTCTAAACTA
42209706 AGACCAATTTAA
1 AGACCAATTTAA
42209718 ATCATATATT
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
24 7 0.10
25 47 0.64
26 19 0.26
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (25 bp):
AGACCAATTTAAGGTGTCTAAACTA
Found at i:42211916 original size:14 final size:14
Alignment explanation
Indices: 42211897--42211923 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42211887 ATGCATCTCC
42211897 CATGCATGAATCTA
1 CATGCATGAATCTA
42211911 CATGCATGAATCT
1 CATGCATGAATCT
42211924 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42212849 original size:14 final size:14
Alignment explanation
Indices: 42212830--42212856 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42212820 ATGCATCTCG
42212830 CATGCATGAATCTA
1 CATGCATGAATCTA
42212844 CATGCATGAATCT
1 CATGCATGAATCT
42212857 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42214715 original size:14 final size:14
Alignment explanation
Indices: 42214696--42214722 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42214686 ATGCATCTCC
42214696 CATGCATGAATCTA
1 CATGCATGAATCTA
42214710 CATGCATGAATCT
1 CATGCATGAATCT
42214723 GTCCAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42215648 original size:14 final size:14
Alignment explanation
Indices: 42215629--42215655 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42215619 ATGCATCTCC
42215629 CATGCATGAATCTA
1 CATGCATGAATCTA
42215643 CATGCATGAATCT
1 CATGCATGAATCT
42215656 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42216581 original size:14 final size:14
Alignment explanation
Indices: 42216562--42216588 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42216552 ATGCATCTCC
42216562 CATGCATGAATCTA
1 CATGCATGAATCTA
42216576 CATGCATGAATCT
1 CATGCATGAATCT
42216589 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42217514 original size:14 final size:14
Alignment explanation
Indices: 42217495--42217521 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42217485 ATGCATCTCG
42217495 CATGCATGAATCTA
1 CATGCATGAATCTA
42217509 CATGCATGAATCT
1 CATGCATGAATCT
42217522 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42218447 original size:14 final size:14
Alignment explanation
Indices: 42218428--42218454 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42218418 ATGCATCTCC
42218428 CATGCATGAATCTA
1 CATGCATGAATCTA
42218442 CATGCATGAATCT
1 CATGCATGAATCT
42218455 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42219380 original size:14 final size:14
Alignment explanation
Indices: 42219361--42219387 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42219351 ATGCATCTCC
42219361 CATGCATGAATCTA
1 CATGCATGAATCTA
42219375 CATGCATGAATCT
1 CATGCATGAATCT
42219388 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42220313 original size:14 final size:14
Alignment explanation
Indices: 42220294--42220320 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42220284 ATGCATCTCG
42220294 CATGCATGAATCTA
1 CATGCATGAATCTA
42220308 CATGCATGAATCT
1 CATGCATGAATCT
42220321 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42221246 original size:14 final size:14
Alignment explanation
Indices: 42221227--42221253 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42221217 ATGCATCTCC
42221227 CATGCATGAATCTA
1 CATGCATGAATCTA
42221241 CATGCATGAATCT
1 CATGCATGAATCT
42221254 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42222179 original size:14 final size:14
Alignment explanation
Indices: 42222160--42222186 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42222150 ATGCATCTCC
42222160 CATGCATGAATCTA
1 CATGCATGAATCTA
42222174 CATGCATGAATCT
1 CATGCATGAATCT
42222187 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42223112 original size:14 final size:14
Alignment explanation
Indices: 42223093--42223119 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42223083 ATGCATCTCC
42223093 CATGCATGAATCTA
1 CATGCATGAATCTA
42223107 CATGCATGAATCT
1 CATGCATGAATCT
42223120 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42224005 original size:932 final size:933
Alignment explanation
Indices: 42211456--42225490 Score: 26501
Period size: 933 Copynumber: 15.0 Consensus size: 933
42211446 ATAAGGCCAT
42211456 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42211521 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42211586 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42211651 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42211716 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42211781 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42211846 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42211911 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* * *
42211976 ATAAATTCAACAAATTCAGCAGAACTAAATTAAAACATAGTGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42212041 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
42212106 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
42212171 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42212236 AGGGTGATAAGTTTGGAAAAAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42212301 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42212366 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42212389 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42212454 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42212519 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42212584 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
* *
42212649 AAGTGTGAATGGACGGTTTTGAATAGTCTCATGGTGAGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42212714 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
* *
42212779 AAATTAAATCAACTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCGCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42212844 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* *
42212909 TTAAATTCAACAAATTTAGCTGAACTAAATTAAAACATAGTGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
*
42212974 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAATTCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42213039 TTAGGACTAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
**
42213104 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGATTGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
* *
42213169 AGGGTTATAAGTTTGGAAACAAAATCAGATTAATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42213234 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
*
42213299 CTCTTACAAGAAAAACAATAACA
911 CTCTTACAAGAAAAACAACAACA
*
42213322 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAAACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
* *
42213387 GAACTAATTTCCAGCTTGAATTCACGAATGGGTTGCTTCAAGGTTCGACTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42213452 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42213517 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
* * *
42213582 AAGTGTGAATGGACGGTTTTGCAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGCCATGGA
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
*
42213647 GTGAACAACATTATGCTGCTTTGAGAGTTGATGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
* *
42213712 AAATTAAGTCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATATA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42213777 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
42213842 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42213907 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42213972 TTAGGACTAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
*
42214037 AATAAAATCGAGACCCTTTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42214102 AGGGTGATAAGTTTGGAAACAAAATCAGATTAATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42214167 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42214232 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42214255 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42214320 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTAGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42214385 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
*
42214450 AATTCATAAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42214515 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42214580 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42214645 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42214710 CATGCATGAATCTGTCCAATATATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42214775 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAGTGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
* *
42214840 ACAAATTAAATGATAATTAAACAAGACTCAATAGTTCAGCTGGACATAATAAATTCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
* *
42214905 TTAGGACTAACTTAGAAAATAAGGACCTGGGCTTAAACCGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
**
42214970 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGATTGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
* *
42215035 AGGGTTATAAGTTTGGAAACAAAATCAGATTAATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42215100 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42215165 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
*
42215188 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAAACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42215253 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGACTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42215318 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
* *
42215383 AATTCATTAAACAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCCTTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42215448 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42215513 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42215578 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42215643 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTACACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* *
42215708 TAAAATTCAACAAATTCAGCTAAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42215773 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
* *
42215838 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTTCAAATAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
*
42215903 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATGATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
42215968 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42216033 GGAGAATAAAGAGTGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42216098 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42216121 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42216186 GAACTAATTTCCAGCTAGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42216251 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42216316 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42216381 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
*
42216446 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTAGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42216511 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
* *
42216576 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGGACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42216641 TTAAATTCAACAAATTCAGCTGAACTAAATTAATACATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42216706 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
42216771 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
**
42216836 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGATTGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42216901 AGGGTGATAAGTTTGGAAACAAAATCAGATTAATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42216966 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42217031 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
*
42217054 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAAACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42217119 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGACTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
* *
42217184 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACACTCAGCTACTGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42217249 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
* * *
42217314 AAGTGTGAATGGACGGCTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAATCGAATGTTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42217379 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
*
42217444 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCGCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42217509 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
42217574 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
* * *
42217639 AAAAATTAAATGATAATTAAACGAGAATCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42217704 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
*
42217769 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATGATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
42217834 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
* *
42217899 GGAGAATAAAGAGAGTGAATTAACTCACGAAAAATATAATTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
*
42217964 TTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42217987 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42218052 GAACTAATTTCTAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
*
42218117 AATAGCTTCCAATGATCTTTGGCAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
*
42218182 AATTCATTAAGCAATTCTTGTTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42218247 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42218312 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42218377 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42218442 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42218507 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAAGATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42218572 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
* * *
42218637 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTCCAATGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
* * * *
42218702 AATAAAATCGGGACCCTCTATTTAGCAAAATAGGAACCTTCGTTATGATTTTGAACGCTAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
* *
42218767 AGGGTGATAAGTTTGGAAACAAAATGAAATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42218832 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAATTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
*
42218897 TTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
*
42218920 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACGTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42218985 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42219050 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
* *
42219115 AATTCATTAAACAATTCTTGTTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42219180 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42219245 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42219310 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
* ** * *
42219375 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGCACCTAAACAACAGGCTTGAGCTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42219440 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAAAGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42219505 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42219570 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
*
42219635 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATGATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
42219700 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42219765 GGAGAATAAAGAGTGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42219830 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
* *
42219853 ATTTATAGTCTAATGACTAGTTGCCGAATGGACATATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42219918 GAACTAATTTCCAGCTAGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42219983 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42220048 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
*
42220113 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCTTGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42220178 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
*
42220243 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCGCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42220308 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42220373 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAGTGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42220438 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42220503 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
* *
42220568 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATGATTTTGAACGCCAGACTA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42220633 AAGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42220698 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAATTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
*
42220763 TTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42220786 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42220851 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42220916 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
*
42220981 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATTGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
*
42221046 AAGTGTGAATGGACGGGTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
*
42221111 GTGAACAACATTATGCTGCTATGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42221176 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
42221241 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
*
42221306 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAGTGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
*
42221371 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTGTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42221436 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCCAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
* * *
42221501 ACTAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAATGCCAAACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
42221566 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42221631 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42221696 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
*
42221719 ATTTATAGTCTAATGACTAGTAGCCGAATGGACTGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42221784 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
42221849 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42221914 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
*
42221979 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGCCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42222044 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42222109 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42222174 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
42222239 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
42222304 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
42222369 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
* *
42222434 AATAAAATCGAGACCCTCTATTCAGCAAAATAGGAACCTTAGGTATAATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42222499 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCTACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
* *
42222564 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAATTCATTCAGAACTTTGGCAAAAAG-C
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42222628 CTTCTTACAAGAAAAACAACAACA
911 C-TCTTACAAGAAAAACAACAACA
42222652 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42222717 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
*
42222782 AATAGCTTCCAATGATCTTTGGAAAATAGCAGCAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42222847 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
*
42222912 AAGTGTGAATGGACAGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
**
42222977 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGATT
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42223042 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42223107 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* *
42223172 TTAAATTCAACAAATTCAGCTGAACTAAATTTAAACATAATGTGGACACATTAATTAATATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
*
42223237 CCAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
*
42223302 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAATGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
42223367 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42223432 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCTACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42223497 GGAGAATAAAGAGAGTGAATTAACTCACC-AAAATATAATTCATTCAGAATTTTGGCAAAAAG-C
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42223560 CTTCTTACAAGAAAAACAACAACA
911 C-TCTTACAAGAAAAACAACAACA
42223584 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
*
42223649 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCAGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
*
42223714 AATAGCTTCCAATGATCTTTGGAAAATAGCAGCAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
42223779 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
*
42223844 AAGTGTGAATGGATGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
**
42223909 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGATT
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
*
42223974 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTTCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
*
42224039 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCCGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* *
42224104 TTAAATTCAACAAATTCAGCTGAACTAAATTTAAACATAATGTGGACACATTAATTAATATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
* *
42224169 CCAAATTAAATGATAATTACACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
* *
42224234 TTAGGACAAACTTAGAAAATAAGGACTTGGGCTTAAAATGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
42224299 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
*
42224364 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCTACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
*
42224429 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAATTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
*
42224494 TTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42224517 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
42224582 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
66 GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
*
42224647 AATAGCTTCCAATGATCTTTGGAAAATAGCAGCAGCTACATTCAGCTAATGGAATTAAATGAGGT
131 AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
*
42224712 AATTCATTAAGCAATTCTTACTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
196 AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
42224777 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
261 AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
42224842 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
326 GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
42224907 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
391 AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
* *
42224972 CATGCATGAATCTATCCGATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
456 CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
* **
42225037 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATATTGTGGATGCATTAATTAACATTGTA
521 TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
*
42225102 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAACTGGACATAATAAAATCATTTTTAAT
586 ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
42225167 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
651 TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
* *
42225232 AATAAAATCAAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAATGCCAGACCA
716 AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
42225297 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
781 AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
42225362 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
846 GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
42225427 CTCTTACAAGAAAAACAACAACA
911 CTCTTACAAGAAAAACAACAACA
42225450 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAA
1 ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAA
42225491 TGTGACAGCC
Statistics
Matches: 12831, Mismatches: 268, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
932 927 0.07
933 11903 0.93
934 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (933 bp):
ATTTATAGTCTAATGACTAGTAGCCGAATGGACAGATTTAAGACTTAATAACAAAGTAAAACATT
GAACTAATTTCCAGCTTGAATTCATGAATGGGTTGCTTCAAGGTTCGGCTGAATATAGACCAAGG
AATAGCTTCCAATGATCTTTGGAAAATAGCAGTAGCTACATTCAGCTAATGGAATTAAATGAGGT
AATTCATTAAGCAATTCTTGCTGAAAAATTACCAACATTAAATGGCAATTAGAACAACCATTTGG
AAGTGTGAATGGACGGTTTTGAAGAGTCTCATGGTGTGAACTTGGCTGAACCGAATGGTCATGGT
GTGAACAACATTATGCTGCTTTGAGAGTTGAAGGGCTTGATGAATAGTTGCTTTGTAGAGTGACC
AAATTAAATCAGCTTCATTGCATGAATTGTACCAGCTGCAAATGCATCTCCCATGCATGAATCTA
CATGCATGAATCTGTCCAATGTATCTTCAAATTCGGCTGCACCTAAACAACACACATGAACTTAA
TTAAATTCAACAAATTCAGCTGAACTAAATTAAAACATAATGTGGACACATTAATTAACATTGTA
ACAAATTAAATGATAATTAAACAAGACTCAATAATTCAGCTGGACATAATAAAATCATTTTTAAT
TTAGGACAAACTTAGAAAATAAGGACCTGGGCTTAAAACGTTTCAAAGAAAAAGGAATGAATATG
AATAAAATCGAGACCCTCTATTTAGCAAAATAGGAACCTTCGGTATAATTTTGAACGCCAGACCA
AGGGTGATAAGTTTGGAAACAAAATCAGATTCATGCCACTTGTGAAGATAAGTCAATTGAGCTTA
GGAGAATAAAGAGAGTGAATTAACTCACCAAAAATATAGTTCATTCAGAATTTTGGCAAAAAGTC
CTCTTACAAGAAAAACAACAACA
Found at i:42224044 original size:14 final size:14
Alignment explanation
Indices: 42224025--42224051 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42224015 ATGCATCTCC
42224025 CATGCATGAATCTA
1 CATGCATGAATCTA
42224039 CATGCATGAATCT
1 CATGCATGAATCT
42224052 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42224977 original size:14 final size:14
Alignment explanation
Indices: 42224958--42224985 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
42224948 ATGCATCTCC
42224958 CATGCATGAATCTA
1 CATGCATGAATCTA
42224972 CATGCATGAATCTA
1 CATGCATGAATCTA
42224986 TCCGATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42227073 original size:40 final size:40
Alignment explanation
Indices: 42227029--42227252 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
42227019 AAGCGAATAT
* * * * *
42227029 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA
42227069 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
42227109 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
*
42227149 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
42227189 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
* * *
42227228 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
42227253 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
Found at i:42227204 original size:120 final size:119
Alignment explanation
Indices: 42226991--42227252 Score: 321
Period size: 120 Copynumber: 2.2 Consensus size: 119
42226981 TGAATGCTGT
* * ** * * * *
42226991 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGATTAAGATCCGAAGGCATTC
* *
42227055 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAA
* *
42227111 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGAT-CCGAAGGCATTC
* ** * *
42227175 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
*
42227230 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
42227253 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 80 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAA
Found at i:42227272 original size:79 final size:80
Alignment explanation
Indices: 42227029--42227287 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
42227019 AAGCGAATAT
* * * * * *
42227029 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
42227093 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
42227109 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
42227174 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
42227189 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
42227253 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
42227268 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
42227288 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:42229059 original size:14 final size:14
Alignment explanation
Indices: 42229040--42229066 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42229030 ATGCATCTCC
42229040 CATGCATGAATCTA
1 CATGCATGAATCTA
42229054 CATGCATGAATCT
1 CATGCATGAATCT
42229067 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:42229401 original size:38 final size:38
Alignment explanation
Indices: 42229349--42229427 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
42229339 CGAATTATAC
* *
42229349 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGTCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
*
42229387 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTATTGCCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
42229425 TGT
1 TGT
42229428 AATAAAAGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.14, C:0.19, G:0.29, T:0.38
Consensus pattern (38 bp):
TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
Found at i:42234335 original size:40 final size:39
Alignment explanation
Indices: 42234237--42234499 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
42234227 TCCTCGTTCA
* * * * *
42234237 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
42234276 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
42234315 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
42234355 GAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * *
42234395 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCAC
** * * * *
42234435 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
42234476 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
42234500 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:42234508 original size:41 final size:41
Alignment explanation
Indices: 42234431--42234508 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
42234421 TTTGTATCTC
* * *
42234431 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
42234472 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
42234509 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:42241903 original size:40 final size:40
Alignment explanation
Indices: 42241803--42242060 Score: 290
Period size: 40 Copynumber: 6.5 Consensus size: 40
42241793 GCTCCTCGTT
* * * * *
42241803 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
42241843 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
42241882 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
42241922 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
42241962 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
42242002 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
42242043 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
42242061 GCCCAGACAG
Statistics
Matches: 193, Mismatches: 19, Indels: 12
0.86 0.08 0.05
Matches are distributed among these distances:
39 40 0.21
40 138 0.72
41 15 0.08
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:42249442 original size:30 final size:30
Alignment explanation
Indices: 42249407--42249465 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
42249397 CCTATAGGGG
*
42249407 ACACACGGGCATGTTGCATAGCCATGTGTC
1 ACACACGGGCATGTCGCATAGCCATGTGTC
*
42249437 ACACACGGGCATGTCGCATAGCCGTGTGT
1 ACACACGGGCATGTCGCATAGCCATGTGT
42249466 GTGTCACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (30 bp):
ACACACGGGCATGTCGCATAGCCATGTGTC
Found at i:42258327 original size:6 final size:6
Alignment explanation
Indices: 42258286--42258323 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
42258276 ATTTTTCTTC
* *
42258286 TCATTT TCATTT TCATTT TCATTT TCTTTT TCCTTT TC
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TC
42258324 CTTTCTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.11, C:0.21, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:42258338 original size:17 final size:18
Alignment explanation
Indices: 42258308--42258353 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
42258298 TCATTTTCAT
42258308 TTTCTTTT-TCCTTTTC-C
1 TTTCTTTTCT-CTTTTCTC
*
42258325 TTTCTTTTCTC-TTTCTT
1 TTTCTTTTCTCTTTTCTC
42258342 TTTCTTTTCTCT
1 TTTCTTTTCTCT
42258354 CAAACTCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 4 0.16
17 20 0.80
18 1 0.04
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTCTTTTCTCTTTTCTC
Found at i:42265925 original size:11 final size:12
Alignment explanation
Indices: 42265909--42265937 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
42265899 AACACACTTA
42265909 TTTTCTC-ATTT
1 TTTTCTCTATTT
42265920 TTTTCTCTATTT
1 TTTTCTCTATTT
42265932 TTTTCT
1 TTTTCT
42265938 TCTCTTGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTCTATTT
Found at i:42272201 original size:23 final size:22
Alignment explanation
Indices: 42272150--42272222 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 22
42272140 GTAATTGAAC
42272150 AAAAAA-TCAAAAAAAAAA-GA
1 AAAAAATTCAAAAAAAAAATGA
*
42272170 AGAGGAAATTCAAAAAAAAAATCGA
1 A-A-AAAATTCAAAAAAAAAAT-GA
* *
42272195 AAAAAATTGAAAAAAAAATTGA
1 AAAAAATTCAAAAAAAAAATGA
42272217 AAAAAA
1 AAAAAA
42272223 AATTCGAAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 11 0.25
23 27 0.61
24 1 0.02
25 3 0.07
ACGTcount: A:0.75, C:0.04, G:0.10, T:0.11
Consensus pattern (22 bp):
AAAAAATTCAAAAAAAAAATGA
Found at i:42272219 original size:10 final size:10
Alignment explanation
Indices: 42272184--42272222 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
42272174 GAAATTCAAA
*
42272184 AAAAAAATCG
1 AAAAAAATTG
42272194 AAAAAAATTG
1 AAAAAAATTG
42272204 AAAAAAAAATTG
1 --AAAAAAATTG
42272216 AAAAAAA
1 AAAAAAA
42272223 AATTCGAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 16 0.62
12 10 0.38
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.13
Consensus pattern (10 bp):
AAAAAAATTG
Found at i:42272225 original size:12 final size:12
Alignment explanation
Indices: 42272182--42272226 Score: 67
Period size: 12 Copynumber: 3.9 Consensus size: 12
42272172 AGGAAATTCA
*
42272182 AAAAAAAAATCG
1 AAAAAAAAATTG
42272194 --AAAAAAATTG
1 AAAAAAAAATTG
42272204 AAAAAAAAATTG
1 AAAAAAAAATTG
42272216 AAAAAAAAATT
1 AAAAAAAAATT
42272227 CGAAGTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 9 0.30
12 21 0.70
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:42279823 original size:15 final size:15
Alignment explanation
Indices: 42279803--42279832 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42279793 GAGAAGGCAC
42279803 AGCAAATACTAAATT
1 AGCAAATACTAAATT
42279818 AGCAAATACTAAATT
1 AGCAAATACTAAATT
42279833 TTCAATCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (15 bp):
AGCAAATACTAAATT
Found at i:42280258 original size:2 final size:2
Alignment explanation
Indices: 42280251--42280277 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
42280241 CATTTTCCTT
42280251 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
42280278 TTTTAAGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42283542 original size:111 final size:110
Alignment explanation
Indices: 42283290--42283603 Score: 472
Period size: 111 Copynumber: 2.9 Consensus size: 110
42283280 ATATTTGGCA
* *
42283290 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAAT
1 ATTTGGTTGAACGAGAAAAAACGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTT-CCAAAC
42283355 GCAAAACATTGCCTTATTTT--AAAATTTTTAAAAGGATTTAAGCC
65 GCAAAACATTGCCTTATTTTAAAAAATTTTTAAAAGGATTTAAGCC
* * * *
42283399 ATTTGATTGAATGAGAAAAAACGACACCCAGCACCTTAGGGCATCTTTTCTCAAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAAACGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
* *
42283464 CAAAACATTGCCTTATTTTAAAAAATTTTTAAAAGGTTATTAAGTC
66 CAAAACATTGCCTTATTTTAAAAAATTTTTAAAAGGAT-TTAAGCC
*
42283510 ATTTGGTTGAACGAGAAAAAACGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAAGG
1 ATTTGGTTGAACGAGAAAAAACGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
* * *
42283575 CTAAATATTGCCTCA-TTTAGAAAAATTTT
66 CAAAACATTGCCTTATTTTA-AAAAATTTT
42283604 CCTTTTTTGA
Statistics
Matches: 185, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
108 25 0.14
109 53 0.29
110 20 0.11
111 87 0.47
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (110 bp):
ATTTGGTTGAACGAGAAAAAACGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
CAAAACATTGCCTTATTTTAAAAAATTTTTAAAAGGATTTAAGCC
Found at i:42283716 original size:4 final size:4
Alignment explanation
Indices: 42283709--42283776 Score: 68
Period size: 4 Copynumber: 17.0 Consensus size: 4
42283699 CAATCATAGC
* *
42283709 AAAT AAAT AAAT AAAT AAAT AAAT AAACT AAAGT AAAT AAA- AAA- GAAC
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAA-T AAAT AAAT AAAT AAAT
* *
42283757 ACAT AAAT AAAT ACAT AAAT
1 AAAT AAAT AAAT AAAT AAAT
42283777 GAACATAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
3 5 0.09
4 41 0.76
5 8 0.15
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:42284101 original size:3 final size:3
Alignment explanation
Indices: 42284093--42284169 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
42284083 TAGATGAAGA
* * * *
42284093 AAT AAT AAT AAT AACT AAT AAT AAC AAC AAT AAT AAT AAA AGAT GAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* *
42284140 AAT -AT ATT AA- AAT AAT GAAG AA- AAT AAT AA
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
42284170 AAATGCTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
2 6 0.10
3 47 0.80
4 6 0.10
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:42285765 original size:132 final size:132
Alignment explanation
Indices: 42285528--42285805 Score: 421
Period size: 132 Copynumber: 2.1 Consensus size: 132
42285518 CGTTATTGTT
* * * ** *
42285528 GATCTGCTCCACTATTGCTTAGGGGGACAAAATCTACAGTCTTTGACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGAGGGACAAAATCTACAATCTTCAACCTACTCCACTACTACTTA
* *
42285593 GGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAATATTCACCATCT
66 GGGTGATAGGACCAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
42285658 TC
131 TC
* * * * *
42285660 GATCTGCCCCACTACTGCTTAGAGTGACAGAATCTGCAATCTTCAACCTACTCCACTATTACTTA
1 GATCTGCTCCACTACTGCTTAGAGGGACAAAATCTACAATCTTCAACCTACTCCACTACTACTTA
*
42285725 GGGTGATAGGACCAATGGCTTAAATTTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
66 GGGTGATAGGACCAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
*
42285790 TT
131 TC
42285792 GATCTGCTCCACTA
1 GATCTGCTCCACTA
42285806 AAACCAAGAG
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 130 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTCCACTACTGCTTAGAGGGACAAAATCTACAATCTTCAACCTACTCCACTACTACTTA
GGGTGATAGGACCAATGGCTTAAATATGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
TC
Found at i:42285841 original size:43 final size:44
Alignment explanation
Indices: 42285787--42286106 Score: 156
Period size: 44 Copynumber: 7.3 Consensus size: 44
42285777 AGATTCACCA
* *
42285787 TCTTTGATCTGCTCCACT-AAAACCAAGAGAGGCAAGGCTTGTG
1 TCTTCGATCTGCTCCACTCACAACCAAGAGAGGCAAGGCTTGTG
* * ** ** *
42285830 TCTTCGATCTGCTTCGCTGTCAATGAAG-GAAGGCAAGATCTAT-TG
1 TCTTCGATCTGCTCCACTCACAACCAAGAG-AGGCAAG-GCT-TGTG
* * * *
42285875 TCTTCAACCAGCTCCA-TCACAACCAAGAGAGGCAAGGTTTGTG
1 TCTTCGATCTGCTCCACTCACAACCAAGAGAGGCAAGGCTTGTG
* * ** * * *
42285918 TCTTCGATCTGCTTCGCTGTCAATGCAGGA-AGGCAA-GATCTGTTG
1 TCTTCGATCTGCTCCACTCACAA-CCAAGAGAGGCAAGGCT-TG-TG
* * * * *
42285963 TCTTCAACCAGCTCCA-TCACAACCGAGAGAGGCAAGGTTTGTG
1 TCTTCGATCTGCTCCACTCACAACCAAGAGAGGCAAGGCTTGTG
* * ** * * *
42286006 TCTTCGATCTGCTTCGCTGTCAATGCAGGA-AGGCAA-GATCTGTTG
1 TCTTCGATCTGCTCCACTCACAA-CCAAGAGAGGCAAGGCT-TG-TG
* * * * *
42286051 TCTTCAACCAGCTCCAC-CACAACCGAGAGAGGCAAGGTTTGTG
1 TCTTCGATCTGCTCCACTCACAACCAAGAGAGGCAAGGCTTGTG
42286094 TCTTCGATCTGCT
1 TCTTCGATCTGCT
42286107 TCGCTGTCAA
Statistics
Matches: 194, Mismatches: 65, Indels: 36
0.66 0.22 0.12
Matches are distributed among these distances:
42 1 0.01
43 65 0.34
44 73 0.38
45 54 0.28
46 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (44 bp):
TCTTCGATCTGCTCCACTCACAACCAAGAGAGGCAAGGCTTGTG
Found at i:42285889 original size:88 final size:87
Alignment explanation
Indices: 42285797--42286222 Score: 672
Period size: 88 Copynumber: 4.8 Consensus size: 87
42285787 TCTTTGATCT
* * * *
42285797 GCTCCACTAAAACCAAGAGAGGCAAGGCTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGAAG
1 GCTCCA-TACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
42285862 GCAAGATCTATTGTCTTCAACCA
65 GCAAGATCTATTGTCTTCAACCA
*
42285885 GCTCCATCACAACCAAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCAT-ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
*
42285950 GCAAGATCTGTTGTCTTCAACCA
65 GCAAGATCTATTGTCTTCAACCA
42285973 GCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCAT-ACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
*
42286038 GCAAGATCTGTTGTCTTCAACCA
65 GCAAGATCTATTGTCTTCAACCA
*
42286061 GCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
1 GCTCCA-TACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
*
42286126 GCAAGATCTATTGTCTTGAACCA
65 GCAAGATCTATTGTCTTCAACCA
* * * * * *
42286149 GCTCCGGTACAATCGAGAGAGGCAAGGTTTGTATCTTCAACCTACTTCGCTGTCAATGCAGGAAG
1 GCTCC-ATACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAG
42286214 GCAAGATCT
65 GCAAGATCT
42286223 GCAACTTCAT
Statistics
Matches: 320, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
87 1 0.00
88 319 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (87 bp):
GCTCCATACAACCGAGAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGG
CAAGATCTATTGTCTTCAACCA
Found at i:42287408 original size:15 final size:14
Alignment explanation
Indices: 42287381--42287423 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
42287371 TTAGCCTCTC
*
42287381 CATTTTTACTTTTT
1 CATTTTTTCTTTTT
42287395 CATTTTTTCATTTTT
1 CATTTTTTC-TTTTT
42287410 CATCTTTTT-TTTTT
1 CAT-TTTTTCTTTTT
42287424 ACACAAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 13 0.50
15 8 0.31
16 5 0.19
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (14 bp):
CATTTTTTCTTTTT
Found at i:42288239 original size:6 final size:6
Alignment explanation
Indices: 42288223--42288265 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
42288213 TGACCTCTCA
* *
42288223 TTTTTC CTTTTC TTTTT- TTTTTC TGTTTC TTCTTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC T
42288266 CCTATTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
7 6 0.19
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:42288245 original size:17 final size:20
Alignment explanation
Indices: 42288223--42288264 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 20
42288213 TGACCTCTCA
42288223 TTTTTCCT-TTTCTT-TTT-
1 TTTTTCCTGTTTCTTCTTTC
42288240 TTTTT-CTGTTTCTTCTTTC
1 TTTTTCCTGTTTCTTCTTTC
42288259 TTTTTC
1 TTTTTC
42288265 TCCTATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 2 0.10
17 11 0.52
18 3 0.14
19 5 0.24
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTCCTGTTTCTTCTTTC
Found at i:42318180 original size:13 final size:13
Alignment explanation
Indices: 42318162--42318187 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42318152 ACCTGAAAGC
42318162 AATTTAATTCATA
1 AATTTAATTCATA
42318175 AATTTAATTCATA
1 AATTTAATTCATA
42318188 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:42318601 original size:20 final size:21
Alignment explanation
Indices: 42318576--42318614 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
42318566 TCAAACAAGC
42318576 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
42318596 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
42318615 CAACGAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:42330444 original size:50 final size:50
Alignment explanation
Indices: 42330371--42330509 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 50
42330361 TCCTGTACTA
* * * **
42330371 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAACGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACGGTG
* * ** * ***
42330421 CCCATGCCATGTCTTAGACATGGTCTTATA-GGAGACCTCTCATCTTGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATAACGGTG
42330471 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTC
1 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTC
42330510 ATTCCCTTAT
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.03
50 67 0.94
51 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACGGTG
Found at i:42333029 original size:46 final size:46
Alignment explanation
Indices: 42332973--42333149 Score: 282
Period size: 46 Copynumber: 3.8 Consensus size: 46
42332963 AGTTTATAAT
* *
42332973 TTATTATTTATAAATAAATTTAGTATTATAATTTTGTGTATAATGA
1 TTATGATTTATAAATAAATTTATTATTATAATTTTGTGTATAATGA
*
42333019 TTATGATTTATGAATAAATTTATTATTATAATTTTGTGTATAATGA
1 TTATGATTTATAAATAAATTTATTATTATAATTTTGTGTATAATGA
* *
42333065 TTATGATTTATGAATAAATTTATTATTATAATTTTGTGTATAATGT
1 TTATGATTTATAAATAAATTTATTATTATAATTTTGTGTATAATGA
** *
42333111 TTATGATTTATAAATAAATTTATTGCTATAATTTAGTGT
1 TTATGATTTATAAATAAATTTATTATTATAATTTTGTGT
42333150 TTTTCTTTTC
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.37, C:0.01, G:0.10, T:0.53
Consensus pattern (46 bp):
TTATGATTTATAAATAAATTTATTATTATAATTTTGTGTATAATGA
Found at i:42336605 original size:41 final size:41
Alignment explanation
Indices: 42336543--42336645 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
42336533 TTGTATATTA
* * *
42336543 ATTGCATGTAAGCATGTCACTAATTGTTACCGTACATACTG
1 ATTGCATGTAACCATGCCACTAATTATTACCGTACATACTG
* * * *
42336584 ATTGCATATAATCATGCCACTAATTATTATCGTACATATTG
1 ATTGCATGTAACCATGCCACTAATTATTACCGTACATACTG
42336625 ATTGCATGTAAACCATGCCAC
1 ATTGCATGT-AACCATGCCAC
42336646 GATACTAATC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 43 0.81
42 10 0.19
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (41 bp):
ATTGCATGTAACCATGCCACTAATTATTACCGTACATACTG
Found at i:42337926 original size:23 final size:23
Alignment explanation
Indices: 42337895--42338282 Score: 308
Period size: 23 Copynumber: 16.5 Consensus size: 23
42337885 ACACCAAAAT
* *
42337895 TTGGACAGCATATATACAACAAT
1 TTGGGCAGCATATATACAACAAA
42337918 TTGGGCAGCATATATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
42337941 TTGAGCAGCATTTTTACACCAAAAA
1 TTGGGCAGCATATATACA--ACAAA
* *
42337966 TTGGACAGCATATGTACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * *
42337989 TTGGGTAGCATATATATACCAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
42338012 TTGAGCAGCATTTTTACATCAAAA
1 TTGGGCAGCATATATACAAC-AAA
* *
42338036 TTGGACAGCATATATACAACAAT
1 TTGGGCAGCATATATACAACAAA
* *
42338059 TTGGGTAGCATAAATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
42338082 TTGAGCAGCATTTTTACACCAAAAA
1 TTGGGCAGCATATATACA--ACAAA
* *
42338107 TTAGACAGCATATATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * *
42338130 TTGGGTAGCATATATATACCAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
42338153 TTGAGCAGCATTTTTACATCAAAA
1 TTGGGCAGCATATATACAAC-AAA
* *
42338177 TTGGACAGCATATATACAACAAT
1 TTGGGCAGCATATATACAACAAA
* *
42338200 TTGGACAGCATAAATACAACAAA
1 TTGGGCAGCATATATACAACAAA
* * * *
42338223 TTGAGCAGCATTTTTACACCAAAAA
1 TTGGGCAGCATATATACA--ACAAA
* * *
42338248 TTTGGACAGCATATATATAACAAT
1 -TTGGGCAGCATATATACAACAAA
42338272 TTGGGCAGCAT
1 TTGGGCAGCAT
42338283 TTAAGCATCA
Statistics
Matches: 279, Mismatches: 77, Indels: 18
0.75 0.21 0.05
Matches are distributed among these distances:
23 188 0.67
24 39 0.14
25 39 0.14
26 13 0.05
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (23 bp):
TTGGGCAGCATATATACAACAAA
Found at i:42337950 original size:71 final size:70
Alignment explanation
Indices: 42337838--42338282 Score: 613
Period size: 71 Copynumber: 6.3 Consensus size: 70
42337828 ACAGCTCTTT
* * * * * * *
42337838 TACATCAATTTGGACAGCATTTATATACCAAACT-AGACAGCATTTTCACACCAAAATTTGGACA
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAG-CAGCATTTTTACACCAAAA-TTGGACA
42337902 GCATATA
64 GCATATA
42337909 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAG
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACC-AAAATTGGACAG
*
42337974 CATATG
65 CATATA
* * * * *
42337980 TACAACAAATTGGGTAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGC
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAATTGGACAGC
42338045 ATATA
66 ATATA
* * *
42338050 TACAACAATTTGGGTAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTAGACAG
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACC-AAAATTGGACAG
42338115 CATATA
65 CATATA
* * * * *
42338121 TACAACAAATTGGGTAGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGC
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAATTGGACAGC
42338186 ATATA
66 ATATA
* *
42338191 TACAACAATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTTGGACA
1 TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACC-AAAA-TTGGACA
42338256 GCATATA
64 GCATATA
*
42338263 TATAACAATTTGGGCAGCAT
1 TACAACAATTTGGGCAGCAT
42338283 TTAAGCATCA
Statistics
Matches: 334, Mismatches: 35, Indels: 9
0.88 0.09 0.02
Matches are distributed among these distances:
70 126 0.38
71 170 0.51
72 38 0.11
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.27
Consensus pattern (70 bp):
TACAACAATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAATTGGACAGC
ATATA
Found at i:42338079 original size:141 final size:141
Alignment explanation
Indices: 42337853--42338282 Score: 718
Period size: 141 Copynumber: 3.0 Consensus size: 141
42337843 CAATTTGGAC
* * * *
42337853 AGCATTTATATACCAAACT-AGACAGCATTTTCACACCAAAATTTGGACAGCATATATACAACAA
1 AGCATATATATACCAAATTGAG-CAGCATTTTTACATCAAAA-TTGGACAGCATATATACAACAA
* *
42337917 TTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCATATGTA
64 TTTGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCATATATA
42337982 CAACAAATTGGGT
129 CAACAAATTGGGT
42337995 AGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGCATATATACAACAATT
1 AGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGCATATATACAACAATT
* *
42338060 TGGGTAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTAGACAGCATATATACA
66 TGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCATATATACA
42338125 ACAAATTGGGT
131 ACAAATTGGGT
42338136 AGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGCATATATACAACAATT
1 AGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGCATATATACAACAATT
* *
42338201 TGGACAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTTGGACAGCATATATAT
66 TGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAA-TTGGACAGCATATATAC
* *
42338266 AACAATTTGGGC
130 AACAAATTGGGT
42338278 AGCAT
1 AGCAT
42338283 TTAAGCATCA
Statistics
Matches: 272, Mismatches: 14, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
141 206 0.76
142 64 0.24
143 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (141 bp):
AGCATATATATACCAAATTGAGCAGCATTTTTACATCAAAATTGGACAGCATATATACAACAATT
TGGGCAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCATATATACA
ACAAATTGGGT
Found at i:42338295 original size:49 final size:49
Alignment explanation
Indices: 42337915--42338284 Score: 195
Period size: 48 Copynumber: 7.8 Consensus size: 49
42337905 TATATACAAC
* * *
42337915 AATTTGGGCAGCATATATACAACAAATTGAGCAGCATTTTTACACCAAA
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTAACACCAAA
** * * * *
42337964 AA-TTGGACAGCATATGTACAACAAATTGGGTAGCA-TATATATACC--A
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTA-ACACCAAA
*** * * * *
42338010 AA-TT-GAGCAGCATTTTTACATCAAAATTG-GACAGCA-TAT-ATA-CAAC
1 AATTTGGA-CAGCATAAATACAAC-AAATTGAG-CAGCATTTTAACACCAAA
** *
42338056 AATTTGGGTAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAA
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTAACACCAAA
* * * * * *
42338105 AA-TTAGACAGCATATATACAACAAATTGGGTAGCA-TATATATACC--A
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTA-ACACCAAA
*** * * * *
42338151 AA-TT-GAGCAGCATTTTTACATCAAAATTG-GACAGCA-TAT-ATA-CAAC
1 AATTTGGA-CAGCATAAATACAAC-AAATTGAG-CAGCATTTTAACACCAAA
*
42338197 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTTACACCAAA
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTAACACCAAA
* * * *
42338246 AATTTGGACAGCATATATATAACAATTTGGGCAGCATTT
1 AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTT
42338285 AAGCATCAAA
Statistics
Matches: 251, Mismatches: 46, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
44 2 0.01
45 10 0.04
46 62 0.25
47 61 0.24
48 71 0.28
49 45 0.18
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.27
Consensus pattern (49 bp):
AATTTGGACAGCATAAATACAACAAATTGAGCAGCATTTTAACACCAAA
Found at i:42339040 original size:28 final size:28
Alignment explanation
Indices: 42339008--42339105 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
42338998 TAATAAGTTT
*
42339008 GCACACCTAGTGCTTAATAATCAATCTC
1 GCACACTTAGTGCTTAATAATCAATCTC
42339036 GCACACTTAGTGCTTAATAATCAATCTC
1 GCACACTTAGTGCTTAATAATCAATCTC
* * * * * *
42339064 GCATACTTAGTGATTTACAATTAAACTC
1 GCACACTTAGTGCTTAATAATCAATCTC
42339092 GCACACTTAGTGCT
1 GCACACTTAGTGCT
42339106 AATCTCATTA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTTAGTGCTTAATAATCAATCTC
Found at i:42340732 original size:235 final size:235
Alignment explanation
Indices: 42340313--42340751 Score: 743
Period size: 235 Copynumber: 1.9 Consensus size: 235
42340303 GGCTGTTATA
* *
42340313 GAGGATTGGGTGGAGTCCACCACCCTAATAAAGAACACTCATTTTAAGTGAGTAGGGAGTTAATT
1 GAGGATTGGGTGGAGTCCACCACCCTAATAAAGAACACTCATTTCAAGTGAGAAGGGAGTTAATT
* *
42340378 TATATTTATGTTATTTTACATTTATTACCTCATGAGATATGGTTTGATTATGGTGCTGTGAAGAC
66 TATATTTATGTTATTTTACATTTATTACCTCATGAGATATGGTTTAATTATGGTGCAGTGAAGAC
* * *
42340443 ACTCAATGAGTTCATTTGAAATTTCAAGAGTTTGTCTAATGTTCGTAGGATTTGCAAGGTTGATC
131 ACTCAATAAGTTCATTTGAAATTTCAAGAGTTTGTCTAATGTTCGCAAGATTTGCAAGGTTGATC
42340508 AAGGACTCAAAACAATATTTATAGTAAGCCGAGAAGCTTT
196 AAGGACTCAAAACAATATTTATAGTAAGCCGAGAAGCTTT
* *
42340548 GAGGATTGGGTGGAGTCCACCGCCCTAATAAAGAACACTCGTTTCAAGTGAGAAGGGAGTTAATT
1 GAGGATTGGGTGGAGTCCACCACCCTAATAAAGAACACTCATTTCAAGTGAGAAGGGAGTTAATT
* *
42340613 TATGTTTATGTTATTTTACATTTATTACCTCATGAGATATGGTTTAATTATGGTGCAGTGAAGAG
66 TATATTTATGTTATTTTACATTTATTACCTCATGAGATATGGTTTAATTATGGTGCAGTGAAGAC
* * *
42340678 ACTCAATAAGTTCATTTGAACTTTCAAGAGTTTGTCTGATGTTCGCAAGATTTGCAAGGTTGATT
131 ACTCAATAAGTTCATTTGAAATTTCAAGAGTTTGTCTAATGTTCGCAAGATTTGCAAGGTTGATC
*
42340743 GAGGACTCA
196 AAGGACTCA
42340752 GAGGAGGGAC
Statistics
Matches: 189, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
235 189 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (235 bp):
GAGGATTGGGTGGAGTCCACCACCCTAATAAAGAACACTCATTTCAAGTGAGAAGGGAGTTAATT
TATATTTATGTTATTTTACATTTATTACCTCATGAGATATGGTTTAATTATGGTGCAGTGAAGAC
ACTCAATAAGTTCATTTGAAATTTCAAGAGTTTGTCTAATGTTCGCAAGATTTGCAAGGTTGATC
AAGGACTCAAAACAATATTTATAGTAAGCCGAGAAGCTTT
Found at i:42342936 original size:40 final size:40
Alignment explanation
Indices: 42342853--42343115 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
42342843 TTGAATGCTG
* * * * * *
42342853 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
42342893 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
42342933 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
42342973 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
42343013 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
42343053 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
42343092 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
42343116 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:42343135 original size:79 final size:80
Alignment explanation
Indices: 42342892--42343150 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
42342882 AAGTGAATAT
* * * * * *
42342892 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
42342956 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
42342972 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
42343037 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
42343052 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
42343116 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
42343131 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
42343151 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:42350241 original size:33 final size:33
Alignment explanation
Indices: 42350204--42350268 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
42350194 AAGTTAGTTT
*
42350204 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGA
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGA
* *
42350237 ATTAATTTTAGTTCAACTTAAATAAGTGTTAG
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAG
42350269 TAAATAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (33 bp):
ATTAAATTTAGTTCAACTCAAATAAGTGTTAGA
Found at i:42353453 original size:81 final size:81
Alignment explanation
Indices: 42353330--42353621 Score: 347
Period size: 81 Copynumber: 3.6 Consensus size: 81
42353320 GACTGAACTA
* * **
42353330 CCCCTAAATGGTAAAATGACCAAAATACCTTCGAAGGGTAAAATGACTGAAATACCCTCGAAGGG
1 CCCC-AAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCTCGAAGGG
42353395 TAAAATGACCAAAATAT
65 TAAAATGACCAAAATAT
* * * * * * * * *
42353412 CCTCGAATGGTAAAATGACTGAAATACCCCCGAAGGATAAAATAATTGAAATACCCTCAAAGGTT
1 CCCCAAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCTCGAAGGGT
*
42353477 AAAGTGACCAAAAT-T
66 AAAATGACCAAAATAT
**
42353492 CCCCTAAAGGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGA-TCGAAATACCCTCGAAGG
1 CCCC-AAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGACT-GAAATACCCTCGAAGG
* * *
42353556 GTAAAATGATCGAAATAC
64 GTAAAATGACCAAAATAT
*
42353574 CCCCAAAGGGTAAAATGACCGAAATACCCCC-ATAGTGTAAAATGACTG
1 CCCCAAAGGGTAAAATGACCGAAATACCCCCGA-AGGGTAAAATGACTG
42353622 TTATACTTCT
Statistics
Matches: 177, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
80 6 0.03
81 163 0.92
82 8 0.05
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (81 bp):
CCCCAAAGGGTAAAATGACCGAAATACCCCCGAAGGGTAAAATGACTGAAATACCCTCGAAGGGT
AAAATGACCAAAATAT
Found at i:42353627 original size:27 final size:27
Alignment explanation
Indices: 42353315--42353619 Score: 295
Period size: 27 Copynumber: 11.3 Consensus size: 27
42353305 ATTTGTGGGA
* * * *
42353315 AAAATGACTGAACTACCCCTAAATGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* ** *
42353342 AAAATGACCAAAATACCTTCGAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* * *
42353369 AAAATGACTGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* * * * *
42353396 AAAATGACCAAAATATCCTCGAATGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* * *
42353423 AAAATGACTGAAATACCCCCGAAGGAT
1 AAAATGACCGAAATACCCCCAAAGGGT
* ** * *
42353450 AAAATAATTGAAATACCCTCAAAGGTT
1 AAAATGACCGAAATACCCCCAAAGGGT
* * * *
42353477 AAAGTGACCAAAATTCCCCTAAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
*
42353504 AAAATGACCGAAATACCCCTAAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* * *
42353531 AAAATGATCGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
*
42353558 AAAATGATCGAAATACCCCCAAAGGGT
1 AAAATGACCGAAATACCCCCAAAGGGT
* *
42353585 AAAATGACCGAAATACCCCCATAGTGT
1 AAAATGACCGAAATACCCCCAAAGGGT
42353612 AAAATGAC
1 AAAATGAC
42353620 TGTTATACTT
Statistics
Matches: 231, Mismatches: 47, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 231 1.00
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCAAAGGGT
Found at i:42354026 original size:28 final size:28
Alignment explanation
Indices: 42353980--42354093 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 28
42353970 CATTCTACTG
* *
42353980 ATTACCGTATTGGTCTAAGGCCCACACT
1 ATTACTGTATTGGGCTAAGGCCCACACT
*
42354008 ATTACTATATTGAGG-TAAGGCCCACACT
1 ATTACTGTATTG-GGCTAAGGCCCACACT
* *
42354036 ATTATTGTATTGGGCTAACGCCCACACACT
1 ATTACTGTATTGGGCTAA-GGCC-CACACT
*
42354066 ATTACTGTAATGGGCTAAGGCCCACACT
1 ATTACTGTATTGGGCTAAGGCCCACACT
42354094 GTACTGATAC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
27 2 0.03
28 42 0.58
29 7 0.10
30 22 0.30
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (28 bp):
ATTACTGTATTGGGCTAAGGCCCACACT
Found at i:42354066 original size:30 final size:30
Alignment explanation
Indices: 42354030--42354092 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
42354020 AGGTAAGGCC
* *
42354030 CACACTATTATTGTATTGGGCTAACGCCCA
1 CACACTATTACTGTAATGGGCTAACGCCCA
*
42354060 CACACTATTACTGTAATGGGCTAAGGCCCA
1 CACACTATTACTGTAATGGGCTAACGCCCA
42354090 CAC
1 CAC
42354093 TGTACTGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (30 bp):
CACACTATTACTGTAATGGGCTAACGCCCA
Found at i:42354085 original size:58 final size:56
Alignment explanation
Indices: 42353986--42354093 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 56
42353976 ACTGATTACC
* * *
42353986 GTATTGGTCTAAGGCCCACACTATTACTATATTGAGGTAAGGCCCACACTATTATT
1 GTATTGGGCTAAGCCCCACACTATTACTATAATGAGGTAAGGCCCACACTATTATT
*
42354042 GTATTGGGCTAACGCCCACACACTATTACTGTAATG-GGCTAAGGCCCACACT
1 GTATTGGGCTAA-GCCC-CACACTATTACTATAATGAGG-TAAGGCCCACACT
42354094 GTACTGATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
56 11 0.24
57 5 0.11
58 29 0.64
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (56 bp):
GTATTGGGCTAAGCCCCACACTATTACTATAATGAGGTAAGGCCCACACTATTATT
Found at i:42361356 original size:162 final size:161
Alignment explanation
Indices: 42361165--42361488 Score: 549
Period size: 162 Copynumber: 2.0 Consensus size: 161
42361155 AAAGATACCT
42361165 TACTGGATTTGTACATCAAGTCAAAAACTTGATTCCTCACAAAATCGATCTCTCCAGCCCTCCTA
1 TACTGGATTTGTACATCAAGTCAAAAACTTGATTCCTCACAAAATCGATCTCTCCAGCCCTCCTA
* * *
42361230 AACAGTTTCAATCATTAATATTAGACTAAATACACTTATACTAAGCATCAATTTCATCATTAAAT
66 AACACTTTCAATCATCAATACTAGACTAAATACACTTATACTAAGCATCAATTTCATCATTAAAT
*
42361295 CAATTTCATAAAATTTTAGAAAATCGATTCA
131 CAATTTCATAAAATTCTAGAAAATCGATTCA
* * *
42361326 TACTGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGATCTTTCTAGCCCTCCT
1 TACTGGATTTGT-ACATCAAGTCAAAAACTTGATTCCTCACAAAATCGATCTCTCCAGCCCTCCT
* * *
42361391 AAACACTTTCAATCATCAATACTAGACTAAATACACTTCTATTAAGCATCAATTTCATCTTTAAA
65 AAACACTTTCAATCATCAATACTAGACTAAATACACTTATACTAAGCATCAATTTCATCATTAAA
42361456 TCAATTTCATAAAATTCTAGAAAATCGATTCA
130 TCAATTTCATAAAATTCTAGAAAATCGATTCA
42361488 T
1 T
42361489 GAAGATGATG
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
161 12 0.08
162 140 0.92
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (161 bp):
TACTGGATTTGTACATCAAGTCAAAAACTTGATTCCTCACAAAATCGATCTCTCCAGCCCTCCTA
AACACTTTCAATCATCAATACTAGACTAAATACACTTATACTAAGCATCAATTTCATCATTAAAT
CAATTTCATAAAATTCTAGAAAATCGATTCA
Found at i:42363319 original size:41 final size:41
Alignment explanation
Indices: 42363273--42363367 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
42363263 TACTGTGTAT
* * * *
42363273 TGATTGCATGTAAGCATGTCACTGATTGTTACCGTACATAC
1 TGATTGCATGTAAGCATGCCACTAATTATTACCATACATAC
*
42363314 TGATTGCATGTAAGCATGCCACTAATTATTACCATAGATAC
1 TGATTGCATGTAAGCATGCCACTAATTATTACCATACATAC
*
42363355 TGATTACATGTAA
1 TGATTGCATGTAA
42363368 AGTATGACAC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (41 bp):
TGATTGCATGTAAGCATGCCACTAATTATTACCATACATAC
Found at i:42364686 original size:51 final size:51
Alignment explanation
Indices: 42364610--42364718 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
42364600 GCAATAGCAA
*
42364610 AGAGGGAGAGAGAGAATGTCAGTGGTGAGGAAGGTCTAGTGAAGGAAGGGG
1 AGAGGGAGAGAGAAAATGTCAGTGGTGAGGAAGGTCTAGTGAAGGAAGGGG
* * * **
42364661 AGAGGGAGAGAGAAAATGAT-GGTGGTGAGGGAGGTCTGGTGGGGGAAGGGG
1 AGAGGGAGAGAGAAAATG-TCAGTGGTGAGGAAGGTCTAGTGAAGGAAGGGG
42364712 AGAGGGA
1 AGAGGGA
42364719 CAAGGATAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 50 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.53, T:0.13
Consensus pattern (51 bp):
AGAGGGAGAGAGAAAATGTCAGTGGTGAGGAAGGTCTAGTGAAGGAAGGGG
Found at i:42364835 original size:19 final size:19
Alignment explanation
Indices: 42364764--42364841 Score: 59
Period size: 19 Copynumber: 4.0 Consensus size: 19
42364754 TATTAATATA
* * *
42364764 TAAATATTGATATAAAATT
1 TAAATATTTATATATATTT
*
42364783 TAAATTTATTAT-TATATTTT
1 TAAATAT-TTATATATA-TTT
* * *
42364803 TGAATTTTTTTATATATTT
1 TAAATATTTATATATATTT
42364822 TAAATATTTATATATTATTT
1 TAAATATTTATATA-TATTT
42364842 CTTATCAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
19 26 0.57
20 20 0.43
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
TAAATATTTATATATATTT
Found at i:42364886 original size:23 final size:25
Alignment explanation
Indices: 42364856--42364919 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 25
42364846 TCAATAATTT
42364856 TTTA-TATTTTATATTTTT-AAA-A
1 TTTATTATTTTATATTTTTAAAATA
*
42364878 TTTATTATTATAT-TTTTTGAAAATA
1 TTTATTATTTTATATTTTT-AAAATA
42364903 TTTATGTAATTTTATAT
1 TTTAT-T-ATTTTATAT
42364920 ATTTGTTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
22 9 0.27
23 7 0.21
24 3 0.09
25 6 0.18
26 1 0.03
27 6 0.18
28 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (25 bp):
TTTATTATTTTATATTTTTAAAATA
Found at i:42365607 original size:23 final size:23
Alignment explanation
Indices: 42365564--42365607 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
42365554 TTAGATATTC
* *
42365564 ACCCCTAATTATAGATCACTAAA
1 ACCCCTAATTACAGATAACTAAA
42365587 ACCCTCTAATTACA-ATAACTA
1 ACCC-CTAATTACAGATAACTA
42365608 TCCAAATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.27
Consensus pattern (23 bp):
ACCCCTAATTACAGATAACTAAA
Found at i:42367138 original size:12 final size:12
Alignment explanation
Indices: 42367121--42367146 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42367111 ATTACTTTTT
42367121 AGGTATTAATAA
1 AGGTATTAATAA
42367133 AGGTATTAATAA
1 AGGTATTAATAA
42367145 AG
1 AG
42367147 AAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (12 bp):
AGGTATTAATAA
Found at i:42367367 original size:21 final size:21
Alignment explanation
Indices: 42367343--42367386 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
42367333 ATTTTACATT
42367343 TTCTAACAGAAAATC-ATTCTC
1 TTCTAACA-AAAATCAATTCTC
*
42367364 TTCTAACACAAATCAATTCTC
1 TTCTAACAAAAATCAATTCTC
42367385 TT
1 TT
42367387 TAATAGTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (21 bp):
TTCTAACAAAAATCAATTCTC
Found at i:42368501 original size:19 final size:18
Alignment explanation
Indices: 42368474--42368528 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
42368464 TAAAAATATT
*
42368474 TAAACAAAAATAATAAATA
1 TAAA-AAAAAAAATAAATA
42368493 TAAAAAAAAAACATAAAT-
1 TAAAAAAAAAA-ATAAATA
42368511 TAAAAAAAAGAAATAAAT
1 TAAAAAAAA-AAATAAAT
42368529 GAATTGTCTC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
18 21 0.64
19 12 0.36
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (18 bp):
TAAAAAAAAAAATAAATA
Found at i:42368899 original size:6 final size:6
Alignment explanation
Indices: 42368893--42368933 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
42368883 ACGGTGATGG
* *
42368893 TGGTGG TGGTGG TGGTGA TGGTGA TGGTGA TGGTGA TGGTG
1 TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTG
42368934 TTGAATAAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.10, C:0.00, G:0.56, T:0.34
Consensus pattern (6 bp):
TGGTGA
Found at i:42369340 original size:21 final size:21
Alignment explanation
Indices: 42369316--42369356 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
42369306 TACATCAAAA
*
42369316 TAGGCTTTTAACGGCGCTTTT
1 TAGGCCTTTAACGGCGCTTTT
*
42369337 TAGGCCTTTAGCGGCGCTTT
1 TAGGCCTTTAACGGCGCTTT
42369357 GAGAAGCACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.22, G:0.27, T:0.39
Consensus pattern (21 bp):
TAGGCCTTTAACGGCGCTTTT
Found at i:42369484 original size:42 final size:41
Alignment explanation
Indices: 42369421--42369583 Score: 155
Period size: 44 Copynumber: 3.8 Consensus size: 41
42369411 TTTTAGAAAT
*
42369421 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCAC
1 AAACGCCACTAAAG-ACAAGACCTTTAGCGGCGCTTTCCCAC
*
42369463 AAACGCCACTAAAGACTAAGACCTTTAGCAGCGCTTTTTCCCAC
1 AAACGCCACTAAAGAC-AAGACCTTTAGCGGCGC--TTTCCCAC
* * * * * * *
42369507 AAATGCCGCTAAAGACAATGAGCTTCAGCGACGTTTTTCTCAC
1 AAACGCCACTAAAGACAA-GACCTTTAGCGGCG-CTTTCCCAC
* * *
42369550 AAACGCCACTAAAAACCATGACATTTAGCGGCGC
1 AAACGCCACTAAAGA-CAAGACCTTTAGCGGCGC
42369584 AATTTGGTTA
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 31 0.32
44 34 0.35
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (41 bp):
AAACGCCACTAAAGACAAGACCTTTAGCGGCGCTTTCCCAC
Found at i:42369519 original size:44 final size:41
Alignment explanation
Indices: 42369421--42369524 Score: 145
Period size: 42 Copynumber: 2.4 Consensus size: 41
42369411 TTTTAGAAAT
*
42369421 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCAC
1 AAACGCCGCTAAAG-ACAAGACCTTTAGCAGCGCTTTCCCAC
*
42369463 AAACGCCACTAAAGACTAAGACCTTTAGCAGCGCTTTTTCCCAC
1 AAACGCCGCTAAAGAC-AAGACCTTTAGCAGCGC--TTTCCCAC
*
42369507 AAATGCCGCTAAAGACAA
1 AAACGCCGCTAAAGACAA
42369525 TGAGCTTCAG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
41 2 0.04
42 29 0.53
43 2 0.04
44 22 0.40
ACGTcount: A:0.35, C:0.31, G:0.16, T:0.18
Consensus pattern (41 bp):
AAACGCCGCTAAAGACAAGACCTTTAGCAGCGCTTTCCCAC
Found at i:42369577 original size:87 final size:86
Alignment explanation
Indices: 42369425--42369583 Score: 203
Period size: 87 Copynumber: 1.8 Consensus size: 86
42369415 AGAAATAAAC
* * * * *
42369425 GCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCACAAACGCCACTAAAGACTAAGACCTTTA
1 GCCGCTAAAGAACAAGACCTTCAGCGACGCTTTCCCACAAACGCCACTAAAAACCAAGACATTTA
42369490 GCAGCGCTTTTTCCCACAAAT
66 GCAGCGCTTTTTCCCACAAAT
* * * *
42369511 GCCGCTAAAG-ACAATGAGCTTCAGCGACGTTTTTCTCACAAACGCCACTAAAAACCATGACATT
1 GCCGCTAAAGAACAA-GACCTTCAGCGACG-CTTTCCCACAAACGCCACTAAAAACCAAGACATT
*
42369575 TAGCGGCGC
64 TAGCAGCGC
42369584 AATTTGGTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 4 0.07
86 21 0.34
87 36 0.59
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (86 bp):
GCCGCTAAAGAACAAGACCTTCAGCGACGCTTTCCCACAAACGCCACTAAAAACCAAGACATTTA
GCAGCGCTTTTTCCCACAAAT
Found at i:42369884 original size:43 final size:44
Alignment explanation
Indices: 42369835--42370042 Score: 203
Period size: 44 Copynumber: 4.8 Consensus size: 44
42369825 TTTTTGCGAG
* * *
42369835 AAGCGCCGCTAAAGAT-TTGATCTATAGCGGCGTTTGTGATAAA
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
* * * * *
42369878 AAGCGCCGCTAAATGTCATGGTTTTTAGTGGCGTTTGTGAGAAA
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
* * * * *
42369922 AA-CGTCGCTGAAGCTCATTG-TCTTTAGCGGCATTTGTGGGAAA
1 AAGCGCCGCTAAAGGTC-TTGATCTTTAGCGGCGTTTGTGAGAAA
* * *
42369965 AAGCGCTGCTAAAGGTCTT-AGTCTTTAGTGGCGTTTGTG-G-GA
1 AAGCGCCGCTAAAGGTCTTGA-TCTTTAGCGGCGTTTGTGAGAAA
*
42370007 AAGCGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTT
42370043 ATTTCTAAAA
Statistics
Matches: 132, Mismatches: 27, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
42 33 0.25
43 48 0.36
44 51 0.39
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
AAGCGCCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGAGAAA
Found at i:42370053 original size:87 final size:85
Alignment explanation
Indices: 42369815--42370042 Score: 251
Period size: 86 Copynumber: 2.6 Consensus size: 85
42369805 AGGTTATGTT
* * *
42369815 TTTAGTGGCGTTTTTGCGAGAAGCGCCGCTAAAGAT-TTGATCTATAGCGGCGTTTGTGATAAAA
1 TTTAGTGGCGTTTGTGGGA-AAGCGCCGCTAAAGATCTTG-TCTTTAGCGGCGTTTGTGATAAAA
* * *
42369879 AGCGCCGCTAAATGTCATGGTT
64 AGCGCCGCTAAAGGTCATAGTC
* * * * * * **
42369901 TTTAGTGGCGTTTGTGAGAAAAACGTCGCTGAAGCTCATTGTCTTTAGCGGCATTTGTGGGAAAA
1 TTTAGTGGCGTTTGTG-GGAAAGCGCCGCTAAAGATC-TTGTCTTTAGCGGCGTTTGTGATAAAA
* *
42369966 AGCGCTGCTAAAGGTCTTAGTC
64 AGCGCCGCTAAAGGTCATAGTC
*
42369988 TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTT
1 TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGATCTTG-TCTTTAGCGGCGTTT
42370043 ATTTCTAAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
85 3 0.03
86 56 0.48
87 54 0.47
88 3 0.03
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.32
Consensus pattern (85 bp):
TTTAGTGGCGTTTGTGGGAAAGCGCCGCTAAAGATCTTGTCTTTAGCGGCGTTTGTGATAAAAAG
CGCCGCTAAAGGTCATAGTC
Found at i:42370133 original size:21 final size:21
Alignment explanation
Indices: 42370107--42370147 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
42370097 GGTGCTTCTC
*
42370107 AAAGCGCCGCTAAAGGCCTAA
1 AAAGCGCCGCTAAAAGCCTAA
*
42370128 AAAGCGCCGTTAAAAGCCTA
1 AAAGCGCCGCTAAAAGCCTA
42370148 TTTTGATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.27, G:0.22, T:0.12
Consensus pattern (21 bp):
AAAGCGCCGCTAAAAGCCTAA
Found at i:42370542 original size:6 final size:6
Alignment explanation
Indices: 42370531--42370571 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
42370521 GCTTATTCAA
* *
42370531 CACCAT CACCAT CACCAT CACCAT CACCAC CACCAC CACCA
1 CACCAT CACCAT CACCAT CACCAT CACCAT CACCAT CACCA
42370572 CCATCACCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.34, C:0.56, G:0.00, T:0.10
Consensus pattern (6 bp):
CACCAT
Found at i:42370572 original size:6 final size:6
Alignment explanation
Indices: 42370531--42370579 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
42370521 GCTTATTCAA
* * * * *
42370531 CACCAT CACCAT CACCAT CACCAT CACCAC CACCAC CACCAC CATCAC
1 CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC CACCAC
42370579 C
1 C
42370580 GTCCCCGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.33, C:0.57, G:0.00, T:0.10
Consensus pattern (6 bp):
CACCAC
Found at i:42372302 original size:23 final size:23
Alignment explanation
Indices: 42372274--42372322 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
42372264 ATATACTATT
*
42372274 AAAGAGAATTGATTTTGTGTTAG
1 AAAGAGAATTGATTTTCTGTTAG
42372297 AAAGAGAATTGATTTTCTGTTAG
1 AAAGAGAATTGATTTTCTGTTAG
42372320 AAA
1 AAA
42372323 ATGTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (23 bp):
AAAGAGAATTGATTTTCTGTTAG
Found at i:42372458 original size:19 final size:20
Alignment explanation
Indices: 42372431--42372472 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
42372421 TTCATCATGA
*
42372431 AAAAAATT-AAATTCAAATT
1 AAAAAATTAAAATTCAAAAT
*
42372450 AAAATATTAAAATTCAAAAT
1 AAAAAATTAAAATTCAAAAT
42372470 AAA
1 AAA
42372473 TCTATGTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAAAATTAAAATTCAAAAT
Found at i:42372550 original size:13 final size:13
Alignment explanation
Indices: 42372532--42372559 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
42372522 AATTTTTTCT
42372532 CTTTATTAAATAC
1 CTTTATTAAATAC
42372545 CTTTATTAAATAC
1 CTTTATTAAATAC
42372558 CT
1 CT
42372560 AAAAAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (13 bp):
CTTTATTAAATAC
Found at i:42374820 original size:23 final size:22
Alignment explanation
Indices: 42374788--42374831 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
42374778 TTACATAAAT
*
42374788 ATTTTCAAAAAATATAATAATAA
1 ATTTT-AAAAAATATAAAAATAA
42374811 ATTTTAAAAAATATAAAAATA
1 ATTTTAAAAAATATAAAAATA
42374832 TAAAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTTAAAAAATATAAAAATAA
Found at i:42374879 original size:24 final size:25
Alignment explanation
Indices: 42374782--42374879 Score: 55
Period size: 25 Copynumber: 3.9 Consensus size: 25
42374772 ATAAAATTAC
42374782 ATAAATATTTTCAAAAA-ATATAATA-
1 ATAAATA-TTT-AAAAATATATAATAT
*
42374807 ATAAAT-TTTAAAAAATATAAAAATAT
1 ATAAATATTT-AAAAATAT-ATAATAT
* * *
42374833 AAAAAATTATTGATAAGA-A-ATAATAT
1 -ATAAA-TATTTA-AAAATATATAATAT
42374859 ATAAATATTT-AAAATATATAA
1 ATAAATATTTAAAAATATATAA
42374880 AAAAATTCAA
Statistics
Matches: 55, Mismatches: 9, Indels: 19
0.66 0.11 0.23
Matches are distributed among these distances:
22 3 0.05
23 9 0.16
24 10 0.18
25 15 0.27
26 6 0.11
27 4 0.07
28 3 0.05
29 5 0.09
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (25 bp):
ATAAATATTTAAAAATATATAATAT
Found at i:42374907 original size:21 final size:19
Alignment explanation
Indices: 42374854--42374898 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
42374844 GATAAGAAAT
* * *
42374854 AATATATAAATATTTAAAA
1 AATATAAAAAAATTCAAAA
*
42374873 TATATAAAAAAATTCAAAA
1 AATATAAAAAAATTCAAAA
42374892 AATATAA
1 AATATAA
42374899 TAATAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AATATAAAAAAATTCAAAA
Found at i:42375050 original size:51 final size:51
Alignment explanation
Indices: 42374974--42375082 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
42374964 CTTATCCTTG
*
42374974 TCCCTCTCCCCTTCCCCCACCAGACCTCCCTCACCAC-CATCATTTTCTCTC
1 TCCCTCTCCCCTTCCCCCACCAGACCTCCCTCACCACTCA-CATTCTCTCTC
** * * *
42375025 TCCCTCTCCCCTTCCTTCACTAGACCTTCCTCACCACTGACATTCTCTCTC
1 TCCCTCTCCCCTTCCCCCACCAGACCTCCCTCACCACTCACATTCTCTCTC
42375076 TCCCTCT
1 TCCCTCT
42375083 TTGCTATTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 50 0.98
52 1 0.02
ACGTcount: A:0.13, C:0.53, G:0.03, T:0.31
Consensus pattern (51 bp):
TCCCTCTCCCCTTCCCCCACCAGACCTCCCTCACCACTCACATTCTCTCTC
Found at i:42376383 original size:41 final size:41
Alignment explanation
Indices: 42376326--42376420 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
42376316 GTGTCATACT
* * * * *
42376326 TTACATGTAATCAGTATCTATGGTAATAATTAGTGGCATGC
1 TTACATGCAATCAGTATCTACGGTAACAATCAGTGACATGC
*
42376367 TTACATGCAATCAGTATGTACGGTAACAATCAGTGACATGC
1 TTACATGCAATCAGTATCTACGGTAACAATCAGTGACATGC
42376408 TTACATGCAATCA
1 TTACATGCAATCA
42376421 ATACACAGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (41 bp):
TTACATGCAATCAGTATCTACGGTAACAATCAGTGACATGC
Found at i:42385556 original size:28 final size:28
Alignment explanation
Indices: 42385523--42385635 Score: 131
Period size: 28 Copynumber: 4.0 Consensus size: 28
42385513 GTATCAGTAC
*
42385523 AGTGTGGGCCTTAGCCCATTACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
42385551 AGTGTGTGGGCGTTAGCCC-ATACAATAAT
1 A--GTGTGGGCCTTAGCCCAATACAGTAAT
*
42385580 AGTGTGGGCCTTA-CCTCAATATAGTAAT
1 AGTGTGGGCCTTAGCC-CAATACAGTAAT
* *
42385608 AGTGTGGGCCTTAGACCAATACGGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
42385636 CAGTAGAATG
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
26 2 0.03
27 12 0.17
28 32 0.45
29 10 0.14
30 15 0.21
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:42386073 original size:27 final size:27
Alignment explanation
Indices: 42386012--42386273 Score: 244
Period size: 27 Copynumber: 9.7 Consensus size: 27
42386002 CTATGGGGGT
* *
42386012 TATTTCGGTCATTTTACCCTTTG-GGG
1 TATTTCGATCATTTTACCCTTCGAGGG
42386038 TATTTCGATCATTTTACCCTTCGAGGG
1 TATTTCGATCATTTTACCCTTCGAGGG
*
42386065 TATTTCGATCATTTTACCCTT-TAGGGG
1 TATTTCGATCATTTTACCCTTCGA-GGG
* * *
42386092 TATTTCGGTCATTTTACCCTTTAGGGGG
1 TATTTCGATCATTTTACCC-TTCGAGGG
* * * * * *
42386120 AATTTTGGTCACTTTAACCTTTGAGGG
1 TATTTCGATCATTTTACCCTTCGAGGG
* * * *
42386147 TATTTCAATTATTTTATCCTTCGGGGG
1 TATTTCGATCATTTTACCCTTCGAGGG
* *
42386174 TATTTC-AGTCCATTTTACCATTCGAGGA
1 TATTTCGA-T-CATTTTACCCTTCGAGGG
* *
42386202 TATTTTGGTCATTTTACCCTTCGAGGG
1 TATTTCGATCATTTTACCCTTCGAGGG
*
42386229 TATTTC-AGTCATTTTACCCTTCGAAGG
1 TATTTCGA-TCATTTTACCCTTCGAGGG
* *
42386256 TATTTTGGTCATTTTACC
1 TATTTCGATCATTTTACC
42386274 ATTTAGGGGT
Statistics
Matches: 192, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.12
27 130 0.68
28 39 0.20
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
TATTTCGATCATTTTACCCTTCGAGGG
Found at i:42386152 original size:55 final size:54
Alignment explanation
Indices: 42385990--42386297 Score: 298
Period size: 55 Copynumber: 5.6 Consensus size: 54
42385980 AAGTATAACA
42385990 GTCATTTTACCACTAT-GGGGGTTATTTCGGTCATTTTACCCTTTG-GGGTATTTCG
1 GTCATTTTACC-CT-TCGGGGG-TATTTCGGTCATTTTACCCTTTGAGGGTATTTCG
* * *
42386045 ATCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTT-AGGGGTATTTCG
1 GTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTTGA-GGGTATTTCG
* * * * * *
42386099 GTCATTTTACCCTTTAGGGGGAATTTTGGTCACTTTAACCTTTGAGGGTATTTCA
1 GTCATTTTACCC-TTCGGGGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCG
* * * * * * * *
42386154 ATTATTTTATCCTTCGGGGGTATTTCAGTCCATTTTACCATTCGAGGATATTTTG
1 GTCATTTTACCCTTCGGGGGTATTTCGGT-CATTTTACCCTTTGAGGGTATTTCG
* * * * *
42386209 GTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAAGGTATTTTG
1 GTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCG
* ** * *
42386263 GTCATTTTACCATTTAGGGGTAGTTCAGTCATTTT
1 GTCATTTTACCCTTCGGGGGTATTTCGGTCATTTT
42386298 TCCCACAAAT
Statistics
Matches: 209, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
53 22 0.11
54 92 0.44
55 94 0.45
56 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTACCCTTTGAGGGTATTTCG
Found at i:42386161 original size:82 final size:81
Alignment explanation
Indices: 42385991--42386282 Score: 318
Period size: 82 Copynumber: 3.6 Consensus size: 81
42385981 AGTATAACAG
* * * *
42385991 TCATTTTACCACTATGGGGGTTATTTCGGTCATTTTACCCTTT-GGGGTATTTCGATCATTTTAC
1 TCATTTTACC-CTTTGGGGG-TATTTCGGTCATTTTACCCTTTGGGGGAATTTTGGTCATTTTAC
*
42386055 CCTTCGAGGGTATTTCGA
64 CCTTCGAGGGTATTTCAA
* * *
42386073 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCTTTAGGGGGAATTTTGGTCACTTTAAC
1 TCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTT-GGGGGAATTTTGGTCATTTTACC
*
42386138 CTTTGAGGGTATTTCAA
65 CTTCGAGGGTATTTCAA
* * * * * * *
42386155 TTATTTTATCCTTCGGGGGTATTTCAGTCCATTTTA-CCATTCGAGGATATTTTGGTCATTTTAC
1 TCATTTTACCCTTTGGGGGTATTTCGGT-CATTTTACCCTTTGGGGGA-ATTTTGGTCATTTTAC
*
42386219 CCTTCGAGGGTATTTCAG
64 CCTTCGAGGGTATTTCAA
* ** * * *
42386237 TCATTTTACCCTTCGAAGGTATTTTGGTCATTTTACCATTTAGGGG
1 TCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTTGGGGG
42386283 TAGTTCAGTC
Statistics
Matches: 174, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
80 22 0.13
81 18 0.10
82 127 0.73
83 7 0.04
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTTTGGGGGTATTTCGGTCATTTTACCCTTTGGGGGAATTTTGGTCATTTTACCC
TTCGAGGGTATTTCAA
Found at i:42389345 original size:33 final size:34
Alignment explanation
Indices: 42389294--42389368 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
42389284 AGATTTAAAC
*
42389294 AAATTAATTACTAACACTTATTTAAGTTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
42389328 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
42389361 AATTTAAT
1 AAATTAAT
42389369 AAACTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:42417585 original size:14 final size:14
Alignment explanation
Indices: 42417566--42417598 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
42417556 TTAACATAAT
42417566 TTCCCAAGAAATTA
1 TTCCCAAGAAATTA
42417580 TTCCCAAGAAATTA
1 TTCCCAAGAAATTA
42417594 TTCCC
1 TTCCC
42417599 TAAATGACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (14 bp):
TTCCCAAGAAATTA
Found at i:42420067 original size:20 final size:20
Alignment explanation
Indices: 42420039--42420076 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
42420029 ACTATCATTT
*
42420039 TTTTCTTTATTTTATTAACC
1 TTTTATTTATTTTATTAACC
42420059 TTTTATTTATTTTATTAA
1 TTTTATTTATTTTATTAA
42420077 TAAAATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTATTTTATTAACC
Done.