Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 138 of 208
Found at i:44977166 original size:95 final size:95
Alignment explanation
Indices: 44977055--44977248 Score: 370
Period size: 95 Copynumber: 2.0 Consensus size: 95
44977045 AAGATCTGTA
44977055 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
44977120 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
*
44977150 ATCTTCAATCTATTCCACTGCCAAATACGGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
44977215 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
44977245 ATCT
1 ATCT
44977249 ACTTTGCTGC
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:44977398 original size:97 final size:95
Alignment explanation
Indices: 44977284--44977479 Score: 356
Period size: 97 Copynumber: 2.0 Consensus size: 95
44977274 AAGATCTGCA
44977284 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
*
44977349 TAGTCACATGGAGGTAAAATCTGCCATCTTCG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTCG
44977381 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
*
44977446 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTCG
44977476 ATCT
1 ATCT
44977480 ACTTTGCTGC
Statistics
Matches: 97, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
95 28 0.29
97 69 0.71
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTCG
Found at i:44977438 original size:231 final size:229
Alignment explanation
Indices: 44977045--44977540 Score: 865
Period size: 231 Copynumber: 2.2 Consensus size: 229
44977035 TTAGGGAGAT
*
44977045 AAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
44977110 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAA
66 TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAA
*
44977175 TACGGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
131 TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
*
44977240 CTTTGATCTACTTTGCTGCCAAATACAATAAGGC
196 CTTTGATCTACTTTGCTGCCAAATACAAGAAGGC
*
44977274 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTTAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
*
44977339 TACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCA
66 TACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCA
*
44977404 AATACAGGGAGATAGAGTTATCGGCTTTAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCC
129 AATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCC
*
44977469 ATCTTTGATCTACTTTGCTGCCAAATACAGGAAGGC
194 ATCTTTGATCTACTTTGCTGCCAAATACAAGAAGGC
*
44977505 AAGATCTGC-ATCTTCGATCTACTT-CA-TGCC-AATACA
1 AAGATCTGCAATCTTCAATCTA-TTCCACTGCCAAATACA
44977541 TGAGACAAGA
Statistics
Matches: 256, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
228 6 0.02
229 81 0.32
230 13 0.05
231 156 0.61
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (229 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATG
TACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTTCAATCTATTCCACTGCCAAA
TACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCAT
CTTTGATCTACTTTGCTGCCAAATACAAGAAGGC
Found at i:44977704 original size:88 final size:89
Alignment explanation
Indices: 44977492--44978303 Score: 717
Period size: 88 Copynumber: 9.3 Consensus size: 89
44977482 TTTGCTGCCA
* * * * *
44977492 AATACAGGAAGGCAAGATCTGC-ATCTTCGATCTACTTC-ATGCCAATACATG-AGACAAGATCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
* *
44977554 ACTTTCTTCGATCTACTTCACCACC
66 GCTATCTTCGATCTACTTCA-CACC
* ** * * * * *
44977579 AGTATGGGAAGACAAGATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAAGACCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
*
44977642 GCTATCTTCGATCTACTTCACGCC
66 GCTATCTTCGATCTACTTCACACC
* * * * *
44977666 AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
* *
44977731 GC-ATCTTTGATCCACTTC-CTACC
66 GCTATCTTCGATCTACTTCAC-ACC
* * * * * * * *
44977754 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
*
44977818 GCTTTCTTCGATCTACTTTGC-CACC
66 GCTATCTTCGATCTAC-TT-CACACC
** * * * * *
44977843 AATATGGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-ATGCCAATACATG-AGACAAGATTT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
* *
44977905 GCTTTCTTCGATCTACTTTACCACC
66 GCTATCTTCGATCTACTTCA-CACC
* ** * * * * * *
44977930 AGTATGGGAAGACAAGATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
*
44977993 GCTATCTTCGATCTACTTCACGCC
66 GCTATCTTCGATCTACTTCACACC
* * * * * *
44978017 AATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
*
44978082 GC-ATCTTCGATCTACTTCACGCC
66 GCTATCTTCGATCTACTTCACACC
* * * * * *
44978105 AATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCT
1 AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
* * *
44978170 GC-ATCGTCGGTCCACTTC-CTACC
66 GCTATCTTCGATCTACTTCAC-ACC
* * * * * * * *
44978193 AATATAGGAAGACAGGA-CTTGTTATCTTTGATCTACTTCAC-GCCAATACATGAAGACAAGATC
1 AATACAGGAAGACAAGATC-TGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATC
* *
44978256 TGCTTTCTTCGATCTACTTCACGCC
65 TGCTATCTTCGATCTACTTCACACC
* *
44978281 AATACATGAAGGCAAGATCTGCT
1 AATACAGGAAGACAAGATCTGCT
44978304 TTAATGACTT
Statistics
Matches: 592, Mismatches: 113, Indels: 39
0.80 0.15 0.05
Matches are distributed among these distances:
86 2 0.00
87 194 0.33
88 325 0.55
89 69 0.12
90 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (89 bp):
AATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTACCAATATAGGAAGACAAGATCT
GCTATCTTCGATCTACTTCACACC
Found at i:44977710 original size:132 final size:132
Alignment explanation
Indices: 44977505--44978275 Score: 686
Period size: 132 Copynumber: 5.9 Consensus size: 132
44977495 ACAGGAAGGC
* *
44977505 AAGATCTGC-ATCTTCGATCTACTTCATGCCAATACATG-AGACAAGATCTACTTTCTTCGATCT
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
* * * * *
44977568 ACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAG
66 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
44977633 AT
131 AT
* *
44977635 AAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
*
44977700 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAG
66 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
44977765 AT
131 AT
* *
44977767 AGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
* * * * * *
44977832 ACTTTGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATG-AG
66 ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
*
44977896 AC
131 AT
* * * * * *** * *
44977898 AAGATTTGCTTTCTTCGATCTACTTTACCACCAGTATGGGAAGACAAGATCTG-TATCTTGGATC
1 AAGATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
* * * * * * * * * * *
44977962 CACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATG
65 TACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGG
44978025 AAGAT
128 AAGAT
* * * * *** *
44978030 AAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATC
1 AAGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATC
* * *** * * * * * *
44978094 TACTTC-ACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGG
65 TACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGG
*
44978158 AAGAC
128 AAGAT
* * * * * * * *
44978163 AAGATCTGC-ATCGTCGGTCCACTTC-CTACCAATATAGGAAGACAGGA-CTTG-TTATCTTTGA
1 AAGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATC-TGCTT-TCTTCGA
* * *** * *
44978224 TCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
63 TCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC
44978276 ACGCCAATAC
Statistics
Matches: 552, Mismatches: 76, Indels: 24
0.85 0.12 0.04
Matches are distributed among these distances:
130 31 0.06
131 113 0.20
132 389 0.70
133 19 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAG
AT
Found at i:44978300 original size:219 final size:217
Alignment explanation
Indices: 44977558--44978302 Score: 1046
Period size: 219 Copynumber: 3.4 Consensus size: 217
44977548 AGATCTACTT
* * *** * * * *
44977558 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TATCTTGGATCCACTTCCTATC
1 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCC-ACC
* * *
44977622 AATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
64 AATATGGGAAGACAAGATCTGC-ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
* * *
44977687 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTA
128 CTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATC-TTGGTCCACTTCCTA
44977752 CCAATATAGGAAGATAGGA-TCTGCTA
192 CCAATATAGGAAGATAGGACT-TGCTA
*
44977778 CCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTTGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC-TT-CCACC
* *
44977843 AATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATG-AGACAAGATTTGC
64 AATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
** * *
44977907 TTTCTTCGATCTACTTTACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTAT
129 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTGG-TCCACTTCCTAC
*
44977972 CAATATAGGAAGATAGGACCTGCTA
193 CAATATAGGAAGATAGGACTTGCTA
* *
44977997 TCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT--CCACC
*
44978062 AATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGC
64 AATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC
*
44978127 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGGTCCACTTCCTAC
129 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATC-TTGGTCCACTTCCTAC
* *
44978192 CAATATAGGAAGACAGGACTTGTTA
193 CAATATAGGAAGATAGGACTTGCTA
* *
44978217 TCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-CACCA
*** *
44978282 ATACATGAAGGCAAGATCTGC
65 ATATGGGAAGACAAGATCTGC
44978303 TTTAATGACT
Statistics
Matches: 471, Mismatches: 45, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
218 6 0.01
219 239 0.51
220 198 0.42
221 26 0.06
222 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (217 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCACCAA
TATGGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTGGTCCACTTCCTACCAA
TATAGGAAGATAGGACTTGCTA
Found at i:44978301 original size:351 final size:351
Alignment explanation
Indices: 44977492--44978277 Score: 1213
Period size: 351 Copynumber: 2.2 Consensus size: 351
44977482 TTTGCTGCCA
* * *
44977492 AATACAGGAAGGCAAGATCTGCATCTTCGATCTACTTCATGCCAATACATGAGACAAGATCTACT
1 AATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATGAGACAAGATCTGCT
44977557 TTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATC
66 TTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATC
44977622 AATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
131 AATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
*
44977687 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTA
196 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTA
* * * *
44977752 CCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
261 CCAATACAGGAAGATAAGATCTGCTACCTTCGATCTACTTCACACCAATACAGGAAGACAAGATC
* * *
44977817 TGCTTTCTTCGATCTACTTTGCCACC
326 TGCTATCGTCGATCCACTTTGCCACC
* *
44977843 AATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATGAGACAAGATTTGCT
1 AATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATGAGACAAGATCTGCT
*
44977908 TTCTTCGATCTACTTTACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATC
66 TTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATC
* *
44977973 AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTG
131 AATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
*
44978038 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCAC-
196 CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CT
* * ** * * **
44978102 GCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGA
260 ACCAATACAGGAAGATAAGATCTGCTACCTTCGATCTACTTC-ACACCAATACAGGAAGACAAGA
*
44978167 TCTGC-ATCGTCGGTCCAC-TT-CCTACC
324 TCTGCTATCGTCGATCCACTTTGCC-ACC
* * * *
44978193 AATATAGGAAGACAGGA-CTTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCT
1 AATATAGGAAGACAAGATC-TG-CATCTTCGATCTACTTCATGCCAATACATG-AGACAAGATCT
44978257 GCTTTCTTCGATCTACTTCAC
63 GCTTTCTTCGATCTACTTCAC
44978278 GCCAATACAT
Statistics
Matches: 396, Mismatches: 33, Indels: 11
0.90 0.08 0.03
Matches are distributed among these distances:
349 3 0.01
350 22 0.06
351 319 0.81
352 52 0.13
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (351 bp):
AATATAGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCCAATACATGAGACAAGATCTGCT
TTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATC
AATATAGGAAGATAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
CTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTA
CCAATACAGGAAGATAAGATCTGCTACCTTCGATCTACTTCACACCAATACAGGAAGACAAGATC
TGCTATCGTCGATCCACTTTGCCACC
Found at i:44978970 original size:108 final size:108
Alignment explanation
Indices: 44978781--44978976 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 108
44978771 GAAAAATGCT
*
44978781 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
44978846 CAATCAAGGTAGCAAATTTTGCTGAGATACGAGATGAATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
* * * **
44978889 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
44978954 TAATCAAGATAGCAAATTTTGCT
66 CAATCAAGATAGCAAATTTTGCT
44978977 AGAATACAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.46, C:0.11, G:0.18, T:0.25
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
Found at i:44979335 original size:21 final size:22
Alignment explanation
Indices: 44979310--44979363 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 22
44979300 CCTTGGCCTC
44979310 TCCTTTTTCTTTTTC-TTTTTT
1 TCCTTTTTCTTTTTCATTTTTT
44979331 TCC-TTTTCTTTTTCATTTTTT
1 TCCTTTTTCTTTTTCATTTTTT
*
44979352 T-ATTTTTCTTTT
1 TCCTTTTTCTTTT
44979364 CGTTTTCTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.80
Consensus pattern (22 bp):
TCCTTTTTCTTTTTCATTTTTT
Found at i:44979341 original size:26 final size:25
Alignment explanation
Indices: 44979315--44979374 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 25
44979305 GCCTCTCCTT
44979315 TTTCTTTTTCTT-TTTTTCCTTTTCTT
1 TTTCTTTTT-TTATTTTT-CTTTTCTT
*
44979341 TTTCATTTTTTTATTTTTCTTTTCGT
1 TTTC-TTTTTTTATTTTTCTTTTCTT
44979367 TTTCTTTT
1 TTTCTTTT
44979375 CAAGTGAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
25 4 0.13
26 17 0.55
27 10 0.32
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTCTTTTTTTATTTTTCTTTTCTT
Found at i:44986736 original size:4 final size:4
Alignment explanation
Indices: 44986727--44986761 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
44986717 AATTTATGGA
44986727 AATT AATT AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AATT AATT AAT
44986762 GAAATTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
AATT
Found at i:44991861 original size:55 final size:56
Alignment explanation
Indices: 44991795--44991930 Score: 132
Period size: 56 Copynumber: 2.4 Consensus size: 56
44991785 GTCTTGGTTT
* * * * * *
44991795 GCCTTAGGTCGCGAAGCCAACTT-GCACATACTTTTTA-AAAACTCGAACAAGGTCC
1 GCCTTAAGTCGCAAAACCAA-TTCGCACATACTTATTAGAAAACACAAACAAGGTCC
* * *
44991850 GCCTTAAGTCGCAAAACCGATTCGCACATACTTATTAGAAAACACAAACATGGTCT
1 GCCTTAAGTCGCAAAACCAATTCGCACATACTTATTAGAAAACACAAACAAGGTCC
* * * *
44991906 GCCTTAGGTTGCAAGACCAGTTCGC
1 GCCTTAAGTCGCAAAACCAATTCGC
44991931 TTATCAAAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
54 2 0.03
55 29 0.45
56 34 0.52
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (56 bp):
GCCTTAAGTCGCAAAACCAATTCGCACATACTTATTAGAAAACACAAACAAGGTCC
Found at i:44993570 original size:36 final size:36
Alignment explanation
Indices: 44993513--44993618 Score: 131
Period size: 36 Copynumber: 2.9 Consensus size: 36
44993503 AACTCTATTT
* *
44993513 AGTTAAGCAGCCTTTTAGATCTATTCTCACTGATTC
1 AGTTAAGCAGCCTTTTGGATCTATTCTGACTGATTC
* *
44993549 AGTTTAGCAGTCTTTTGGATCTATTCTGACTGATTC
1 AGTTAAGCAGCCTTTTGGATCTATTCTGACTGATTC
* * * * *
44993585 TGTTCAGTAGCCTTTCGGATCTATTTTGACTGAT
1 AGTTAAGCAGCCTTTTGGATCTATTCTGACTGAT
44993619 GCGCTCCTCC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (36 bp):
AGTTAAGCAGCCTTTTGGATCTATTCTGACTGATTC
Found at i:44996204 original size:40 final size:40
Alignment explanation
Indices: 44995983--44996190 Score: 310
Period size: 40 Copynumber: 5.2 Consensus size: 40
44995973 CTCGTTCAAG
* * * * *
44995983 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* *
44996022 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
44996062 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
44996102 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
44996142 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
*
44996182 GGCCTTCGG
1 TGCCTTCGG
44996191 ATCTTAGTCC
Statistics
Matches: 157, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 32 0.20
40 125 0.80
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:44996227 original size:80 final size:80
Alignment explanation
Indices: 44995984--44996243 Score: 265
Period size: 80 Copynumber: 3.3 Consensus size: 80
44995974 TCGTTCAAGT
* * * * * * * *
44995984 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
44996048 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
44996063 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
44996128 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * **
44996143 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
44996207 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
* *
44996223 GCCTTGGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
44996244 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
79 34 0.22
80 119 0.75
81 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:44996227 original size:120 final size:119
Alignment explanation
Indices: 44995984--44996243 Score: 308
Period size: 120 Copynumber: 2.2 Consensus size: 119
44995974 TCGTTCAAGT
* * *
44995984 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTAA
1 GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTAA
* * * * *
44996049 CAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAAT
66 CAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACGAAA
* * *
44996103 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
** * ** * *
44996168 GTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AAA
65 ACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACGAAA
*
44996223 GCCTTGGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
44996244 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
119 34 0.29
120 79 0.67
121 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTAA
CAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACGAAA
Found at i:45000906 original size:22 final size:22
Alignment explanation
Indices: 45000881--45000923 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45000871 ATATTAATAA
*
45000881 TTCGTTACTAATAAA-AATCATG
1 TTCGTGAC-AATAAATAATCATG
45000903 TTCGTGACAATAAATAATCAT
1 TTCGTGACAATAAATAATCAT
45000924 CACCAATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (22 bp):
TTCGTGACAATAAATAATCATG
Found at i:45010362 original size:20 final size:21
Alignment explanation
Indices: 45010330--45010371 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45010320 TCCACTAAAA
45010330 ATTAGCATCTAGG-TGTTCAC
1 ATTAGCATCTAGGTTGTTCAC
45010350 ATTAGTCAT-TAGGTTGTTCAC
1 ATTAG-CATCTAGGTTGTTCAC
45010371 A
1 A
45010372 CAGAAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (21 bp):
ATTAGCATCTAGGTTGTTCAC
Found at i:45012193 original size:25 final size:24
Alignment explanation
Indices: 45012145--45012196 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
45012135 TTTTAATAAG
*
45012145 ATTTAATATTAAATTTAATCTAAT
1 ATTTAATATTAAATTAAATCTAAT
* *
45012169 ATTTATATATTAGATTAAATTTAAT
1 ATTTA-ATATTAAATTAAATCTAAT
45012194 ATT
1 ATT
45012197 AAAGTGATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTAATATTAAATTAAATCTAAT
Found at i:45017545 original size:27 final size:28
Alignment explanation
Indices: 45017506--45017563 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
45017496 GATTATATCG
*
45017506 CATTATTTGTTATGCAGCAGTTTTATTA
1 CATTATTTGTTATGCAGCAGTTTTACTA
* *
45017534 CATTA-TTGTTATTCAGTAGTTTTACTA
1 CATTATTTGTTATGCAGCAGTTTTACTA
45017561 CAT
1 CAT
45017564 CAAGCTTTGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (28 bp):
CATTATTTGTTATGCAGCAGTTTTACTA
Found at i:45025083 original size:23 final size:23
Alignment explanation
Indices: 45025055--45025105 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
45025045 CGACGAGATT
45025055 TGTAATATCC-CGAAAATTACTAC
1 TGTAATA-CCGCGAAAATTACTAC
*
45025078 TGTAATACCGTGAAAATTACTAC
1 TGTAATACCGCGAAAATTACTAC
*
45025101 AGTAA
1 TGTAA
45025106 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (23 bp):
TGTAATACCGCGAAAATTACTAC
Found at i:45027830 original size:13 final size:13
Alignment explanation
Indices: 45027812--45027837 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45027802 ACCAAGTCTA
45027812 TCTAGTAATGCCT
1 TCTAGTAATGCCT
45027825 TCTAGTAATGCCT
1 TCTAGTAATGCCT
45027838 CGTACCCTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
TCTAGTAATGCCT
Found at i:45028287 original size:524 final size:524
Alignment explanation
Indices: 45027299--45028337 Score: 1889
Period size: 524 Copynumber: 2.0 Consensus size: 524
45027289 AAATGTATGT
* *
45027299 CTTCTAGTAATGCGTCGTACCCTATTTCGGCGTCGAATACGAGTGAGGGGTGTTACAATGTGACA
1 CTTCTAGTAATGCCTCGTACCCTATTCCGGCGTCGAATACGAGTGAGGGGTGTTACAATGTGACA
* * *
45027364 TCGCCAGATTCGGTCATAACGTTTAGACCGGGTTTGAGGTGTTACAAGATTGGTCTATAAGATTA
66 GCGCCAGATTAGGTCATAACGTTTAGACCGGGTTTGAGGTGTTACAAGATTGGTCCATAAGATTA
*
45027429 GATGATGCTTTATGGGCTTACAGAACAACATACAAGACACTGTTAGGGATGTCACCCTATAGGTT
131 GATGATGCTTTATGGGCTTACAGAACAACATACAAGACACTATTAGGGATGTCACCCTATAGGTT
*
45027494 GGTTTTTGGGAAAGCTTGCCATCTACCATTTGAGTTAGAGCACAAAGCTTACTAGGCTCTTCAAC
196 GGTTTTTGGGAAAGCCTGCCATCTACCATTTGAGTTAGAGCACAAAGCTTACTAGGCTCTTCAAC
*
45027559 AACTTAATTTGGATCCTAAGCTCGCGAAAGAAAAATGGATGTTCCAACTCAATGAGTTAGAAGAG
261 AACTTAATTTGGATCCTAAGCTCGCGAAAGAAAAACGGATGTTCCAACTCAATGAGTTAGAAGAG
* *
45027624 TTCCGAATGTTCTCTTATGAAAAAGCCAAATTACTTAAAGAAAGACTCAAGAAATGGCATGACAA
326 TTCCGAATGTTCTCATATGAAAAAGCCAAATTACTTAAAGAAAGACTCAAGAAATGACATGACAA
*
45027689 CCACATTCGAGTTCGAGAATTTGAAGCAGGTCAGCAAGTCTTGTTGTTCAATTCCAGATTGAAGT
391 CCACATTCGAGTTCGAGAATTTGAAGCAGATCAGCAAGTCTTGTTGTTCAATTCCAGATTGAAGT
*
45027754 TCTTTCCAGGTAAGCTAAAATCACGTTGGTCCAGTCCATTTACGATTCACCAAGTCTATCTAGTA
456 TCTTTCCAGGTAAGCTAAAATCACATTGGTCCAGTCCATTTACGATTCACCAAGTCTATCTAGTA
45027819 ATGC
521 ATGC
45027823 CTTCTAGTAATGCCTCGTACCCTATTCCGGCGTCGAATACGAGTGAGGGGTGTTACAATGTGACA
1 CTTCTAGTAATGCCTCGTACCCTATTCCGGCGTCGAATACGAGTGAGGGGTGTTACAATGTGACA
*
45027888 GCGCCAGATTAGGTCATAACGTTTAGACCGGGTTTGGGGTGTTACAAGATTGGTCCATAAGATTA
66 GCGCCAGATTAGGTCATAACGTTTAGACCGGGTTTGAGGTGTTACAAGATTGGTCCATAAGATTA
* *
45027953 GATGATGCTTTATGGGCTTACAGAACAGCATACAAGACACTATTAGGGATGTTACCCTATAGGTT
131 GATGATGCTTTATGGGCTTACAGAACAACATACAAGACACTATTAGGGATGTCACCCTATAGGTT
45028018 GGTTTTTGGGAAAGCCTGCCATCTACCATTTGAGTTAGAGCACAAAGCTTACTAGGCTCTTCAAC
196 GGTTTTTGGGAAAGCCTGCCATCTACCATTTGAGTTAGAGCACAAAGCTTACTAGGCTCTTCAAC
* *
45028083 AACTTAATTTGGATCCTAAGCTTGCGAAAGAAAAACGGATGTTCCAACTCAATTAGTTAGAAGAG
261 AACTTAATTTGGATCCTAAGCTCGCGAAAGAAAAACGGATGTTCCAACTCAATGAGTTAGAAGAG
* *
45028148 TTCTGAATGTTCTCATATGAAAATGCCAAATTACTTAAAGAAAGACTCAAGAAATGACATGACAA
326 TTCCGAATGTTCTCATATGAAAAAGCCAAATTACTTAAAGAAAGACTCAAGAAATGACATGACAA
45028213 CCACATTCGAGTTCGAGAATTTGAAGCAGATCAGCAAGTCTTGTTGTTCAATTCCAGATTGAAGT
391 CCACATTCGAGTTCGAGAATTTGAAGCAGATCAGCAAGTCTTGTTGTTCAATTCCAGATTGAAGT
**
45028278 TCTTTCCAGGTAAGCTAAAATCACATTGGTCTGGTCCATTTACGATTCACCAAGTCTATC
456 TCTTTCCAGGTAAGCTAAAATCACATTGGTCCAGTCCATTTACGATTCACCAAGTCTATC
45028338 CATAAAGATT
Statistics
Matches: 494, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
524 494 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (524 bp):
CTTCTAGTAATGCCTCGTACCCTATTCCGGCGTCGAATACGAGTGAGGGGTGTTACAATGTGACA
GCGCCAGATTAGGTCATAACGTTTAGACCGGGTTTGAGGTGTTACAAGATTGGTCCATAAGATTA
GATGATGCTTTATGGGCTTACAGAACAACATACAAGACACTATTAGGGATGTCACCCTATAGGTT
GGTTTTTGGGAAAGCCTGCCATCTACCATTTGAGTTAGAGCACAAAGCTTACTAGGCTCTTCAAC
AACTTAATTTGGATCCTAAGCTCGCGAAAGAAAAACGGATGTTCCAACTCAATGAGTTAGAAGAG
TTCCGAATGTTCTCATATGAAAAAGCCAAATTACTTAAAGAAAGACTCAAGAAATGACATGACAA
CCACATTCGAGTTCGAGAATTTGAAGCAGATCAGCAAGTCTTGTTGTTCAATTCCAGATTGAAGT
TCTTTCCAGGTAAGCTAAAATCACATTGGTCCAGTCCATTTACGATTCACCAAGTCTATCTAGTA
ATGC
Found at i:45028885 original size:15 final size:16
Alignment explanation
Indices: 45028850--45028886 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
45028840 TTGATAAACT
45028850 TTATTATATAATTATA
1 TTATTATATAATTATA
45028866 TTATT-TATAATT-TA
1 TTATTATATAATTATA
45028880 TATATTA
1 T-TATTA
45028887 ATTTTTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.16
15 11 0.58
16 5 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATTATATAATTATA
Found at i:45035468 original size:68 final size:69
Alignment explanation
Indices: 45035369--45035555 Score: 295
Period size: 68 Copynumber: 2.7 Consensus size: 69
45035359 CAGTATTGAC
* *
45035369 TTGTACCAAAAATGGACAACATTTAAGCACTAATTTGGACAGCATTAATAACAAACGGACAACAT
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATAACAAACAGACAACAT
45035434 AGAT
66 AGAT
** *
45035438 TTGTACC-AAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATAACATTCAGACAGCAT
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATAACAAACAGACAACAT
*
45035502 AGGT
66 AGAT
* *
45035506 TTGTACCAAAAATGGACAGTATTTAAGCACTAATTTGGACAACATTAATA
1 TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATA
45035556 TGCTAAAAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
68 62 0.57
69 47 0.43
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (69 bp):
TTGTACCAAAAATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATAACAAACAGACAACAT
AGAT
Found at i:45039124 original size:28 final size:28
Alignment explanation
Indices: 45039066--45039184 Score: 134
Period size: 28 Copynumber: 4.3 Consensus size: 28
45039056 TATTCAGTAT
* * *
45039066 CAGT-ACAGTGTGGGCC-TAGCTCGATA
1 CAGTAACAGAGTGGGCCTTAGCCCAATA
* **
45039092 CAGTAACAGCGTGAACCTTAGCCCAATA
1 CAGTAACAGAGTGGGCCTTAGCCCAATA
* *
45039120 TAGTAATAGAGTGGGCCTTAGCCCAATA
1 CAGTAACAGAGTGGGCCTTAGCCCAATA
* *
45039148 CAGTAATAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGAGTGGGCCTTAGCCCAATA
45039176 CAGTAACAG
1 CAGTAACAG
45039185 TACAGTGCCA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 4 0.05
27 9 0.12
28 65 0.83
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (28 bp):
CAGTAACAGAGTGGGCCTTAGCCCAATA
Found at i:45039593 original size:26 final size:27
Alignment explanation
Indices: 45039510--45039622 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 27
45039500 GGTATAACAG
* * * *
45039510 TCATTTTACCTTATGGGGGTATTTAGG
1 TCATTTTACCCTATGAGGGTATTTCGA
* *
45039537 TTATTTTACCCTATGAGGGTATTTCTA
1 TCATTTTACCCTATGAGGGTATTTCGA
45039564 TCATTTTACCCTATGAGGG-ATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
* *
45039590 TCATTTTACCCTAT-AGGAGTATTTTGG
1 TCATTTTACCCTATGAGG-GTATTTCGA
45039617 TCATTT
1 TCATTT
45039623 ATTGACCGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
25 3 0.04
26 21 0.28
27 50 0.68
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGA
Found at i:45039612 original size:53 final size:54
Alignment explanation
Indices: 45039510--45039613 Score: 140
Period size: 53 Copynumber: 1.9 Consensus size: 54
45039500 GGTATAACAG
* * * *
45039510 TCATTTTACCTTATGGGGGTATTTAGGTTATTTTACCCTATGAGGGTATTTCTA
1 TCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGAGGGTATTTCTA
*
45039564 TCATTTTACCCTATGAGGG-ATTTCGATCATTTTACCCTAT-AGGAGTATTT
1 TCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGAGG-GTATTT
45039614 TGGTCATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
52 3 0.07
53 24 0.55
54 17 0.39
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.44
Consensus pattern (54 bp):
TCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGAGGGTATTTCTA
Found at i:45041690 original size:28 final size:28
Alignment explanation
Indices: 45041627--45041808 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
45041617 ATATTAAGTC
* *
45041627 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45041654 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
45041682 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45041710 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45041738 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45041766 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
45041794 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45041809 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:45045007 original size:28 final size:28
Alignment explanation
Indices: 45044944--45045125 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
45044934 ATATTAAGTC
* *
45044944 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45044971 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
45044999 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45045027 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45045055 CGCACACTTAGTGCTACATAATCAATCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45045083 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
45045111 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45045126 GTACAATTTA
Statistics
Matches: 148, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 22 0.15
28 126 0.85
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:45047649 original size:27 final size:27
Alignment explanation
Indices: 45047611--45047674 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
45047601 AGGTTTTAGG
* *
45047611 TAGGCAGCACTAGTTGTGCCTACCTGA
1 TAGGCGGCACTAGTTGAGCCTACCTGA
*
45047638 TAGGCGGCACTAGTTGAGCCTATCTGA
1 TAGGCGGCACTAGTTGAGCCTACCTGA
45047665 TAGGCGGCAC
1 TAGGCGGCAC
45047675 ACCCAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (27 bp):
TAGGCGGCACTAGTTGAGCCTACCTGA
Found at i:45047847 original size:14 final size:14
Alignment explanation
Indices: 45047828--45047856 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45047818 TAATGTATTT
45047828 AATTTATATTACAA
1 AATTTATATTACAA
45047842 AATTTATATTACAA
1 AATTTATATTACAA
45047856 A
1 A
45047857 GTTNNNNNNN
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:45064773 original size:28 final size:28
Alignment explanation
Indices: 45064742--45064796 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
45064732 AATGTAAGCC
*
45064742 TTAGCCCAATATAGTAATAGAGTGGGCG
1 TTAGCCCAATACAGTAATAGAGTGGGCG
*
45064770 TTAGCCCAATACAGTAATAGTGTGGGC
1 TTAGCCCAATACAGTAATAGAGTGGGC
45064797 CTCAATACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (28 bp):
TTAGCCCAATACAGTAATAGAGTGGGCG
Found at i:45066911 original size:40 final size:40
Alignment explanation
Indices: 45066867--45067128 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
45066857 GCTCCTCGTT
* *
45066867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
45066907 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
45066947 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
45066986 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
45067025 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
45067064 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
45067105 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45067129 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:45074475 original size:40 final size:40
Alignment explanation
Indices: 45074431--45074692 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
45074421 GCTCCTCGTT
* *
45074431 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
45074471 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
45074511 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
45074550 CAAATGCCTTCGGG-CATAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
45074589 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
45074628 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
45074669 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45074693 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:45091303 original size:69 final size:69
Alignment explanation
Indices: 45091186--45091316 Score: 165
Period size: 69 Copynumber: 1.9 Consensus size: 69
45091176 ATTCATAAAT
** * * * * * *
45091186 ATTTGGACAGCAGTTAAAACATTTGGACAGCATTGACTTGTTCCAAAAATGGACAGCATTTAAGC
1 ATTTGGACAGCAGTTAAAACATTCCGACAACATAGACTTCTACAAAAAATGGACAACATTTAAGC
45091251 ACTA
66 ACTA
*
45091255 ATTTGGACAGCA-TTAATAACATTCCGACAACATAGATTTCTACAAAAAATGGACAACATTTA
1 ATTTGGACAGCAGTTAA-AACATTCCGACAACATAGACTTCTACAAAAAATGGACAACATTTA
45091317 TACATGCAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 4 0.08
69 48 0.92
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (69 bp):
ATTTGGACAGCAGTTAAAACATTCCGACAACATAGACTTCTACAAAAAATGGACAACATTTAAGC
ACTA
Found at i:45091343 original size:34 final size:34
Alignment explanation
Indices: 45091304--45091402 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
45091294 CTACAAAAAA
*
45091304 TGGACAACATTTATACATGCAAAGCAACCACATT
1 TGGACAACATTTATACATGCAAAACAACCACATT
*
45091338 TGGACAACA-TTATAACATGTAAAAACAACCACATT
1 TGGACAACATTTAT-ACATG-CAAAACAACCACATT
* * *
45091373 TGGATATCATTGTA-ATATGCAAAACAACCA
1 TGGACAACATT-TATACATGCAAAACAACCA
45091403 TACTTTAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
33 4 0.07
34 24 0.44
35 24 0.44
36 1 0.02
37 2 0.04
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.24
Consensus pattern (34 bp):
TGGACAACATTTATACATGCAAAACAACCACATT
Found at i:45091374 original size:35 final size:33
Alignment explanation
Indices: 45091304--45091402 Score: 117
Period size: 35 Copynumber: 2.9 Consensus size: 33
45091294 CTACAAAAAA
*
45091304 TGGACAACATTTATACATGCAAAGCAACCACATT
1 TGGACAACATTTA-ACATGCAAAACAACCACATT
*
45091338 TGGACAACATTATAACATGTAAAAACAACCACATT
1 TGGACAACATT-TAACATG-CAAAACAACCACATT
* * *
45091373 TGGATATCATTGTAATATGCAAAACAACCA
1 TGGACAACATT-TAACATGCAAAACAACCA
45091403 TACTTTAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
34 26 0.46
35 30 0.54
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.24
Consensus pattern (33 bp):
TGGACAACATTTAACATGCAAAACAACCACATT
Found at i:45092130 original size:42 final size:41
Alignment explanation
Indices: 45092083--45092194 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
45092073 AGCTCGTACA
* * **
45092083 ATGCCATATCCCAGATATGGTCTTACATGTTATAATATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATAATATA-CG
* *
45092125 ATGCCACTATTCCAGACA-GAGTCTTACACGAAATCATATACG
1 ATGCCA-TATCCCAGACATG-GTCTTACACGAAATAATATACG
*
45092167 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCC-ATATCCCAGACATGGTCTTACA
45092195 AAAAATCACA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
42 31 0.53
43 27 0.47
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATAATATACG
Found at i:45109029 original size:20 final size:20
Alignment explanation
Indices: 45109004--45109042 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
45108994 TGAGTTATTT
45109004 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
45109024 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
45109043 GAACATGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:45116603 original size:12 final size:12
Alignment explanation
Indices: 45116588--45116615 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
45116578 TACTTACTCT
45116588 CTTACTTGTTTA
1 CTTACTTGTTTA
45116600 CTTACTTGTTTA
1 CTTACTTGTTTA
45116612 CTTA
1 CTTA
45116616 AATAACTCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.57
Consensus pattern (12 bp):
CTTACTTGTTTA
Found at i:45116984 original size:50 final size:48
Alignment explanation
Indices: 45116921--45117058 Score: 195
Period size: 50 Copynumber: 2.8 Consensus size: 48
45116911 CGGTGCCCAT
**
45116921 GCCATGTCCCAGACATATTCTTACGGGGAACCTCTCATCTCGGTACCAAC
1 GCCATGT-CCAGACATGGTCTTACGGGG-ACCTCTCATCTCGGTACCAAC
*
45116971 GCCATGTCTCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTACCAAC
1 GCCATGTC-CAGACATGGTCTTAC-GGGGACCTCTCATCTCGGTACCAAC
45117021 GCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCAT
1 GCCATGTCC-AGACATGGTCTTACG-GGGACCTCTCAT
45117059 AATCTCTATA
Statistics
Matches: 81, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
49 3 0.04
50 74 0.91
51 4 0.05
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (48 bp):
GCCATGTCCAGACATGGTCTTACGGGGACCTCTCATCTCGGTACCAAC
Found at i:45119514 original size:21 final size:21
Alignment explanation
Indices: 45119488--45119540 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
45119478 GTTGTTGGGA
*
45119488 AAGAAGTTGCTGCTGCAGAAG
1 AAGAAGTTGCTGCTGAAGAAG
* *
45119509 AGGAAGTTGTTGCTGAAGAAG
1 AAGAAGTTGCTGCTGAAGAAG
*
45119530 AAAAAGTTGCT
1 AAGAAGTTGCT
45119541 AAAAAAGAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.32, T:0.23
Consensus pattern (21 bp):
AAGAAGTTGCTGCTGAAGAAG
Found at i:45119538 original size:18 final size:18
Alignment explanation
Indices: 45119517--45119553 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45119507 AGAGGAAGTT
* *
45119517 GTTGCTGAAGAAGAAAAA
1 GTTGCTAAAAAAGAAAAA
45119535 GTTGCTAAAAAAGAAAAA
1 GTTGCTAAAAAAGAAAAA
45119553 G
1 G
45119554 AAAATTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.05, G:0.24, T:0.16
Consensus pattern (18 bp):
GTTGCTAAAAAAGAAAAA
Found at i:45128305 original size:29 final size:30
Alignment explanation
Indices: 45128270--45128340 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
45128260 CTATCAAATT
45128270 ATGAAAACGGATGGTGACGACCATCAA-CA
1 ATGAAAACGGATGGTGACGACCATCAAGCA
* * *
45128299 ATGAAAATGGATGGTTACGACCATCAAGTA
1 ATGAAAACGGATGGTGACGACCATCAAGCA
*
45128329 ATGAAAAGGGAT
1 ATGAAAACGGAT
45128341 AGCTTCGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 25 0.68
30 12 0.32
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.18
Consensus pattern (30 bp):
ATGAAAACGGATGGTGACGACCATCAAGCA
Found at i:45130372 original size:14 final size:14
Alignment explanation
Indices: 45130355--45130383 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45130345 TGTATGAAGC
45130355 AACACTGATTTAAA
1 AACACTGATTTAAA
45130369 AACACTGATTTAAA
1 AACACTGATTTAAA
45130383 A
1 A
45130384 GCAACACCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (14 bp):
AACACTGATTTAAA
Found at i:45139122 original size:19 final size:17
Alignment explanation
Indices: 45139098--45139144 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
45139088 TTTTAATTAA
45139098 ATAAATATTACTTTTATAT
1 ATAAATATTA-TTTTAT-T
*
45139117 ATAAATATGATTTTATT
1 ATAAATATTATTTTATT
*
45139134 TTAAATATTAT
1 ATAAATATTAT
45139145 AATTATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.40
18 6 0.24
19 9 0.36
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
ATAAATATTATTTTATT
Found at i:45139140 original size:17 final size:19
Alignment explanation
Indices: 45139098--45139141 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
45139088 TTTTAATTAA
*
45139098 ATAAATATTACTTTTATAT
1 ATAAATATGACTTTTATAT
45139117 ATAAATATGA-TTTTAT-T
1 ATAAATATGACTTTTATAT
*
45139134 TTAAATAT
1 ATAAATAT
45139142 TATAATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 6 0.26
19 9 0.39
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
ATAAATATGACTTTTATAT
Found at i:45141193 original size:24 final size:24
Alignment explanation
Indices: 45141166--45141215 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
45141156 ATTAGATCAT
*
45141166 ATATATT-TTTTAAAAATTATAAAA
1 ATATATTATTTGAAAAATT-TAAAA
*
45141190 ATATATTATTTGATAAATTTAAAA
1 ATATATTATTTGAAAAATTTAAAA
45141214 AT
1 AT
45141216 TCCAGCACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
ATATATTATTTGAAAAATTTAAAA
Found at i:45143541 original size:13 final size:13
Alignment explanation
Indices: 45143525--45143549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45143515 CATAAAACAG
45143525 AAAAAAATAAAAT
1 AAAAAAATAAAAT
45143538 AAAAAAATAAAA
1 AAAAAAATAAAA
45143550 AACGACGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:45144442 original size:44 final size:43
Alignment explanation
Indices: 45144389--45144644 Score: 141
Period size: 44 Copynumber: 6.0 Consensus size: 43
45144379 GATTACCAAA
* * *
45144389 TTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TTC
* * ** * *
45144433 TTCAGTCTGCCCCATTGTGACTTCAGGGGGATAAGACTTGTTT
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTC
* * ** *
45144476 TCTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGACCCG--A
1 T-TCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTC
* * * ** *
45144518 TGC-GATCTGCTCCATTACTGCTT-AGAGAGATAAGATCTATTGTT-
1 TTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TTGTTC
* * *
45144562 TT-AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTC
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG--TTC
* * **
45144605 TTCTGTCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGT
1 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
45144645 AATTTCCAAC
Statistics
Matches: 154, Mismatches: 44, Indels: 30
0.68 0.19 0.13
Matches are distributed among these distances:
40 15 0.10
41 15 0.10
42 4 0.03
43 30 0.19
44 90 0.58
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (43 bp):
TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTC
Found at i:45145101 original size:87 final size:87
Alignment explanation
Indices: 45144761--45145091 Score: 518
Period size: 87 Copynumber: 3.8 Consensus size: 87
45144751 TAGTGCTTAA
* * * *
45144761 GAAGGCAAGATATGATATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGATTTGTTTTTG
1 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
*
45144826 ATCTGCTTCACTGTTAACGTAG
66 ATCTGCTTCACTGTTAACGCAG
* *
45144848 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGTTTTGTTTTCG
1 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
* * *
45144913 GTCTGCTTCACTGTTGACGCAA
66 ATCTGCTTCACTGTTAACGCAG
* *
45144935 GAAGGCAAGATTTGTTATCTTTAACCAGTTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
1 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
*
45145000 ATCTGCTTCGCTGTTAACGCAG
66 ATCTGCTTCACTGTTAACGCAG
* * *
45145022 GAAGGCAAGATCTGTTATCTTTAACCACCTCTACTGCAACCGATGGAGGCAAGGCTTTGTTTTCG
1 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
45145087 ATCTG
66 ATCTG
45145092 TTGATCTGTT
Statistics
Matches: 222, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 222 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
ATCTGCTTCACTGTTAACGCAG
Found at i:45146413 original size:8 final size:8
Alignment explanation
Indices: 45146395--45146427 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
45146385 TTGATTTTGC
45146395 TTTTC-TT
1 TTTTCTTT
45146402 TTTTCTTT
1 TTTTCTTT
45146410 TTTTCTTT
1 TTTTCTTT
45146418 TTTTCTTT
1 TTTTCTTT
45146426 TT
1 TT
45146428 CTTTTGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.20
8 20 0.80
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTCTTT
Found at i:45146413 original size:15 final size:14
Alignment explanation
Indices: 45146395--45146432 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
45146385 TTGATTTTGC
*
45146395 TTTTCTTTTTTCTTT
1 TTTTCTTTTTT-TCT
45146410 TTTTCTTTTTTTCT
1 TTTTCTTTTTTTCT
45146424 TTTTCTTTT
1 TTTTCTTTT
45146433 GATTTTTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTCTTTTTTTCT
Found at i:45151634 original size:27 final size:27
Alignment explanation
Indices: 45151604--45151781 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
45151594 ATATTGAGTC
* *
45151604 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
45151631 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
45151658 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** * *
45151686 CGCACACTTAGTGCCGCATGGTCCATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45151713 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
45151740 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
45151767 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45151782 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45151743 original size:82 final size:81
Alignment explanation
Indices: 45151630--45151780 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
45151620 TATAATCAAC
* *
45151630 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
45151695 AGTGCCGCATGGTCCAT
65 AGTGCCGCATGGTCCAT
* **
45151712 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
45151776 AGTGC
65 AGTGC
45151781 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCCAT
Found at i:45162841 original size:25 final size:25
Alignment explanation
Indices: 45162813--45162861 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
45162803 TATAGTCTAT
* * *
45162813 CTATAGTAGTCTCAGTATTTACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
45162838 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
45162862 TCAAAGACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:45168120 original size:14 final size:15
Alignment explanation
Indices: 45168109--45168151 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
45168099 CACTAAAAAT
45168109 TTATTTTAAAAATAA
1 TTATTTTAAAAATAA
**
45168124 AAATTTTAAAAA-AA
1 TTATTTTAAAAATAA
*
45168138 GTATTTTAAAAATA
1 TTATTTTAAAAATA
45168152 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TTATTTTAAAAATAA
Found at i:45170471 original size:26 final size:26
Alignment explanation
Indices: 45170442--45170512 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
45170432 TCTCATCTCT
* *
45170442 ATTTTTCCCTTAGCAAAATTTTGACA
1 ATTTTACCCTTAGTAAAATTTTGACA
*
45170468 ATTTTACCCTTGGTAAAATTTTGACA
1 ATTTTACCCTTAGTAAAATTTTGACA
* *
45170494 ATTTTGCCCCTAGTAAAAT
1 ATTTTACCCTTAGTAAAAT
45170513 CTCAAGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTTAGTAAAATTTTGACA
Found at i:45176524 original size:25 final size:26
Alignment explanation
Indices: 45176496--45176556 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
45176486 TTTCCCTAGA
45176496 AAAATTTTGAC-AATTTTACCC-AGGT
1 AAAATTTTGACGAA-TTTACCCTAGGT
* *
45176521 AAAATTTTGACGAATTTGCCCTTGGT
1 AAAATTTTGACGAATTTACCCTAGGT
45176547 AAAATTTTGA
1 AAAATTTTGA
45176557 GAAAATATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (26 bp):
AAAATTTTGACGAATTTACCCTAGGT
Found at i:45186970 original size:12 final size:14
Alignment explanation
Indices: 45186948--45186986 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
45186938 GAGAAAAACT
*
45186948 TAATAATAATATAAA
1 TAATAAT-ATATACA
*
45186963 TGATAATATATACA
1 TAATAATATATACA
45186977 TAATAATATA
1 TAATAATATA
45186987 CAAAAGTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATATATACA
Found at i:45187488 original size:31 final size:31
Alignment explanation
Indices: 45187427--45187488 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
45187417 TATATCAAAA
* * *
45187427 AATAAGAACTAATTAGATTTAAAATTAAAGT
1 AATAAAAACTAATTAGAATTAAAATCAAAGT
*
45187458 AATAAAAACTAAATTAGAATTGAAA-CAAAGT
1 AATAAAAACT-AATTAGAATTAAAATCAAAGT
45187489 TAAAAGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.58, C:0.05, G:0.10, T:0.27
Consensus pattern (31 bp):
AATAAAAACTAATTAGAATTAAAATCAAAGT
Found at i:45188645 original size:13 final size:13
Alignment explanation
Indices: 45188627--45188674 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
45188617 ACTGGACATT
45188627 TTATTTATATATA
1 TTATTTATATATA
* * *
45188640 TTATTTTTATTTT
1 TTATTTATATATA
45188653 TTA-TTATATATA
1 TTATTTATATATA
*
45188665 TTTTTTATAT
1 TTATTTATAT
45188675 TTTGGTTTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 8 0.30
13 19 0.70
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTATATATA
Found at i:45188653 original size:25 final size:25
Alignment explanation
Indices: 45188625--45188677 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
45188615 TTACTGGACA
45188625 TTTTATTTATATATATTATTTT-TATT
1 TTTTA-TTATATATATT-TTTTATATT
45188651 TTTTATTATATATATTTTTTATATT
1 TTTTATTATATATATTTTTTATATT
45188676 TT
1 TT
45188678 GGTTTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 4 0.15
25 17 0.65
26 5 0.19
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTTATTATATATATTTTTTATATT
Found at i:45188659 original size:16 final size:16
Alignment explanation
Indices: 45188638--45188677 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
45188628 TATTTATATA
45188638 TATTATTTTTATTTTT
1 TATTATTTTTATTTTT
* *
45188654 TATTATATATATTTTT
1 TATTATTTTTATTTTT
45188670 TA-TATTTT
1 TATTATTTT
45188678 GGTTTTAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTATTTTTATTTTT
Found at i:45188669 original size:23 final size:26
Alignment explanation
Indices: 45188624--45188677 Score: 78
Period size: 23 Copynumber: 2.2 Consensus size: 26
45188614 ATTACTGGAC
45188624 ATTTTATTTATATATATTATTTTTAT
1 ATTTTATTTATATATATTATTTTTAT
*
45188650 TTTTTA-TTATATATA-T-TTTTTAT
1 ATTTTATTTATATATATTATTTTTAT
45188673 ATTTT
1 ATTTT
45188678 GGTTTTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 11 0.42
24 1 0.04
25 9 0.35
26 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (26 bp):
ATTTTATTTATATATATTATTTTTAT
Found at i:45188901 original size:18 final size:18
Alignment explanation
Indices: 45188877--45188925 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
45188867 AGACTATTTG
45188877 CCTTTTTCTTTATTTTTA
1 CCTTTTTCTTTATTTTTA
*
45188895 GCTTTTTCTTTATTTTTA
1 CCTTTTTCTTTATTTTTA
45188913 CCTTTTTCTTTAT
1 CCTTTTTCTTTAT
45188926 ATATAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.10, C:0.16, G:0.02, T:0.71
Consensus pattern (18 bp):
CCTTTTTCTTTATTTTTA
Found at i:45190967 original size:50 final size:50
Alignment explanation
Indices: 45190892--45191123 Score: 311
Period size: 50 Copynumber: 4.6 Consensus size: 50
45190882 TGAAATAGAT
45190892 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
* *
45190942 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATTGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
* * * *
45190992 ATGAAAGGTCTCATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
*** * * * * *
45191042 ATGAGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCATCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
** *
45191092 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGA
45191124 TATGAAATTG
Statistics
Matches: 158, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 158 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAG
Found at i:45194025 original size:63 final size:63
Alignment explanation
Indices: 45193907--45194143 Score: 203
Period size: 63 Copynumber: 3.8 Consensus size: 63
45193897 CGTGTGCTAA
* * * **
45193907 GCCATGTAACTCACTGTTTGTGATTTAAAGTCACAC-GGACTAGGAACACATACGTGTCTTTAG
1 GCCATGTAACTCACTGTTTGTGATTTAAAGTCACACGGGCCAAGG-ACACAGACGTGTCTCCAG
* * ** *
45193970 GCCATGTAACACAGTGTTTGTGATTTAAAGTCACACGGGCCAAGGACATGGACGTGTGTCCAG
1 GCCATGTAACTCACTGTTTGTGATTTAAAGTCACACGGGCCAAGGACACAGACGTGTCTCCAG
* * * * * * *
45194033 GCCGTGTAACTCACTGTTTATG-CTTAAGAGTCACACGAGCCAGGGACACCAG-CTTGTGTCCAG
1 GCCATGTAACTCACTGTTTGTGATTTAA-AGTCACACGGGCCAAGGACA-CAGACGTGTCTCCAG
* * * ** *
45194096 GTCGA-GTAACTCACTATTTGTGATATAGGGTCACAGGGGCCAAGGACA
1 G-CCATGTAACTCACTGTTTGTGATTTAAAGTCACACGGGCCAAGGACA
45194144 TGGCCGTGTG
Statistics
Matches: 138, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
62 4 0.03
63 124 0.90
64 10 0.07
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (63 bp):
GCCATGTAACTCACTGTTTGTGATTTAAAGTCACACGGGCCAAGGACACAGACGTGTCTCCAG
Found at i:45203762 original size:23 final size:23
Alignment explanation
Indices: 45203732--45203784 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
45203722 GTCGAGCATC
45203732 CCAGCACAATCAAGCTTCCCCTA
1 CCAGCACAATCAAGCTTCCCCTA
*
45203755 CCAGCACAATCAAGCTTCTCCTA
1 CCAGCACAATCAAGCTTCCCCTA
45203778 CCA-CACA
1 CCAGCACA
45203785 TCTCCCGCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.14
23 25 0.86
ACGTcount: A:0.32, C:0.43, G:0.08, T:0.17
Consensus pattern (23 bp):
CCAGCACAATCAAGCTTCCCCTA
Found at i:45207093 original size:22 final size:22
Alignment explanation
Indices: 45207068--45207140 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
45207058 AGTTCTAAAG
* * *
45207068 TATGAGAACTTATATGTTGATA
1 TATGTGAACATATATGTTAATA
*
45207090 TATGTGACCATATATGTTAATA
1 TATGTGAACATATATGTTAATA
* * *
45207112 TATGTGAACCTAAATGTTTATA
1 TATGTGAACATATATGTTAATA
45207134 TATGTGA
1 TATGTGA
45207141 TTCTATATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
TATGTGAACATATATGTTAATA
Found at i:45207150 original size:22 final size:21
Alignment explanation
Indices: 45207078--45207152 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 21
45207068 TATGAGAACT
*
45207078 TATATGTTGATATATGTGACC
1 TATATGTTAATATATGTGACC
45207099 ATATATGTTAATATATGTGAACC
1 -TATATGTTAATATATGTG-ACC
* * *
45207122 TAAATGTTTATATATGTGATTC
1 TATATGTTAATATATGTGA-CC
45207144 TATATGTTA
1 TATATGTTA
45207153 TACCATGCGA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 41 0.91
23 3 0.07
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (21 bp):
TATATGTTAATATATGTGACC
Found at i:45207448 original size:25 final size:26
Alignment explanation
Indices: 45207420--45207470 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45207410 CCCCTAGGTG
45207420 TGCG-AACACTAGGTATGCGAACCCC
1 TGCGAAACACTAGGTATGCGAACCCC
* *
45207445 TGCGCAAACACTCGGTATGTGAACCC
1 TGCG-AAACACTAGGTATGCGAACCC
45207471 TAGGTGTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.18
27 18 0.82
ACGTcount: A:0.27, C:0.31, G:0.24, T:0.18
Consensus pattern (26 bp):
TGCGAAACACTAGGTATGCGAACCCC
Found at i:45207523 original size:14 final size:14
Alignment explanation
Indices: 45207504--45207536 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
45207494 TGAACCCTAC
45207504 ATGTGCAAACCCCT
1 ATGTGCAAACCCCT
45207518 ATGTGCAAACCCCT
1 ATGTGCAAACCCCT
45207532 ATGTG
1 ATGTG
45207537 TGAACCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (14 bp):
ATGTGCAAACCCCT
Found at i:45208149 original size:23 final size:24
Alignment explanation
Indices: 45208104--45208162 Score: 84
Period size: 23 Copynumber: 2.5 Consensus size: 24
45208094 ATTTTCCGTG
*
45208104 AACATGTTCAATTATATGTTCATA
1 AACATGTTCGATTATATGTTCATA
* *
45208128 AACATGTTCGTTTA-ATGTTCATG
1 AACATGTTCGATTATATGTTCATA
45208151 AACATGTTCGAT
1 AACATGTTCGAT
45208163 CAAGTTAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (24 bp):
AACATGTTCGATTATATGTTCATA
Found at i:45208913 original size:2 final size:2
Alignment explanation
Indices: 45208908--45208950 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
45208898 TTTGTGTGCA
45208908 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
45208950 T
1 T
45208951 TTAGTGTTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:45214748 original size:17 final size:18
Alignment explanation
Indices: 45214717--45214750 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45214707 GGTAGGAAAT
*
45214717 TTTATAAAATGTGCATCA
1 TTTATAAAATATGCATCA
45214735 TTTA-AAAATATGCATC
1 TTTATAAAATATGCATC
45214751 GACATGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (18 bp):
TTTATAAAATATGCATCA
Found at i:45214820 original size:14 final size:14
Alignment explanation
Indices: 45214800--45214836 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
45214790 TTATTGTGAT
45214800 GATTGATATGACGA
1 GATTGATATGACGA
* *
45214814 TATTGATATGATGA
1 GATTGATATGACGA
45214828 GATTGATAT
1 GATTGATAT
45214837 CTTGATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (14 bp):
GATTGATATGACGA
Found at i:45215458 original size:27 final size:27
Alignment explanation
Indices: 45215427--45215484 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
45215417 GACATTTTTA
45215427 GTGGGTTTAGTGGGTTAAACCGGAGGC
1 GTGGGTTTAGTGGGTTAAACCGGAGGC
* *
45215454 GTGGGTTTAGTTGGTTACACCGGAGGC
1 GTGGGTTTAGTGGGTTAAACCGGAGGC
45215481 GTGG
1 GTGG
45215485 CCTCTGAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.12, G:0.45, T:0.28
Consensus pattern (27 bp):
GTGGGTTTAGTGGGTTAAACCGGAGGC
Found at i:45230122 original size:134 final size:135
Alignment explanation
Indices: 45229891--45230136 Score: 329
Period size: 134 Copynumber: 1.8 Consensus size: 135
45229881 CGATACCAAG
* * **
45229891 GAAATTCTATCGATACCAAATATAAGGTATCGATATCGTATCGATACTTGATAAATCCTTTGGAA
1 GAAATTCTATCGATACCAAATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAAA
** *
45229956 GTCAGAATACCAATTTCGTACCGATACTGAAAAAAT-TATTGATAAAAGTATATCATTATTGATA
66 AACAGAATACCAATTTCGTACCGATACTG-AAAAATGTATCGATAAAAGTATATCATTATTGATA
45230020 CTTGAA
130 CTTGAA
* *
45230026 GAAATT-TATTGATACTC-AATAAAAGGTATCGATATTGTATCGATACTTGATAAATACTTTCAA
1 GAAATTCTATCGATAC-CAAATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAA
* * *
45230089 AAACATAATATC-ATTCTGGTACCGATACTGAAAAATGTATCGATAAAA
65 AAACAGAATACCAATT-TCGTACCGATACTGAAAAATGTATCGATAAAA
45230137 TTTTGAATCT
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
133 9 0.09
134 80 0.83
135 7 0.07
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (135 bp):
GAAATTCTATCGATACCAAATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAAA
AACAGAATACCAATTTCGTACCGATACTGAAAAATGTATCGATAAAAGTATATCATTATTGATAC
TTGAA
Found at i:45230183 original size:134 final size:133
Alignment explanation
Indices: 45229909--45230175 Score: 281
Period size: 134 Copynumber: 2.0 Consensus size: 133
45229899 ATCGATACCA
* * ** **
45229909 AATATAAGGTATCGATATCGTATCGATACTTGATAAATCCTTTGGAAGTCAGAATACCAATTTCG
1 AATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAAAAACAGAATACCAATTTCG
* ** * * * *
45229974 TACCGATACTGAAAAAATTATTGATAAAAGTATATCATTATTGATACTTGAAGAAATTTATTGAT
66 TACCGATACTGAAAAAATTATCGATAAAAGTATATCA-TATCAATACTTCAAAAAATCTATTAAT
45230039 ACTC
130 ACTC
* * * *
45230043 AATAAAAGGTATCGATATTGTATCGATACTTGATAAATACTTTCAAAAACATAATATC-ATTCTG
1 AATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAAAAACAGAATACCAATT-TC
* *
45230107 GTACCGATACTG-AAAAATGTATCGATAAAATTTTGAATC-TATCAATAC-TCAACAAAATCTAT
65 GTACCGATACTGAAAAAAT-TATCGATAAAAGTAT--ATCATATCAATACTTCAA-AAAATCTAT
45230169 TAATACT
126 TAATACT
45230176 TGATAAAAAG
Statistics
Matches: 109, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
133 12 0.11
134 94 0.86
136 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (133 bp):
AATAAAAGGTATCGATATCGTATCGATACTTGATAAATACTTTCAAAAACAGAATACCAATTTCG
TACCGATACTGAAAAAATTATCGATAAAAGTATATCATATCAATACTTCAAAAAATCTATTAATA
CTC
Found at i:45231493 original size:24 final size:25
Alignment explanation
Indices: 45231466--45231512 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
45231456 AAAACTCTTC
* *
45231466 TAAAAGAAAACTTAAA-AAAATTCT
1 TAAAAAAAAACTCAAAGAAAATTCT
45231490 TAAAAAAAAACTCAAAGAAAATT
1 TAAAAAAAAACTCAAAGAAAATT
45231513 TTATTAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.66, C:0.09, G:0.04, T:0.21
Consensus pattern (25 bp):
TAAAAAAAAACTCAAAGAAAATTCT
Found at i:45235073 original size:20 final size:20
Alignment explanation
Indices: 45235029--45235075 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
45235019 TTTACCCATA
45235029 TAATTTTTTTATTTCTTCTT
1 TAATTTTTTTATTTCTTCTT
45235049 T-ATTTTTTTCATATT-TT-TT
1 TAATTTTTTT-AT-TTCTTCTT
45235068 TAATTTTT
1 TAATTTTT
45235076 CCACTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 11 0.46
20 11 0.46
21 2 0.08
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (20 bp):
TAATTTTTTTATTTCTTCTT
Found at i:45235503 original size:26 final size:26
Alignment explanation
Indices: 45235470--45235522 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
45235460 AAACTCTTCT
*
45235470 AAAAGAAAACTCAATAGAA-ATTCTTA
1 AAAAGAAAACTCAA-AGAATACTCTTA
45235496 AAAAGAAAACTCAAAGAATACTCTTA
1 AAAAGAAAACTCAAAGAATACTCTTA
45235522 A
1 A
45235523 GTAGATCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21
Consensus pattern (26 bp):
AAAAGAAAACTCAAAGAATACTCTTA
Found at i:45236817 original size:68 final size:65
Alignment explanation
Indices: 45236655--45236806 Score: 162
Period size: 66 Copynumber: 2.3 Consensus size: 65
45236645 TCGAAAGAAG
* * * * * *
45236655 TTACAGGTGTAACACCACAGCTCGGCTATGGCAACAATGGAGTCCTTCAGGACATTTAACATAGG
1 TTACATGTGTAAGACCATATCTCGGCTATGGCAACAATGGAGT-CTTCAAGACATTAAACATAGG
*
45236720 G
65 A
* * *
45236721 TTACATGTGTAAGTCTATATCTCAGCTATGGCAACATATGGAGT-TTGCTAAGACATTAAACATG
1 TTACATGTGTAAGACCATATCTCGGCTATGGCAACA-ATGGAGTCTT-C-AAGACATTAAACAT-
45236785 AGGA
62 AGGA
45236789 TTACATGTGTAAGACCAT
1 TTACATGTGTAAGACCAT
45236807 TGTTTGGCTA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
65 2 0.03
66 30 0.43
67 19 0.27
68 19 0.27
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (65 bp):
TTACATGTGTAAGACCATATCTCGGCTATGGCAACAATGGAGTCTTCAAGACATTAAACATAGGA
Found at i:45241232 original size:12 final size:12
Alignment explanation
Indices: 45241217--45241242 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45241207 GAATTGTATA
45241217 ATGGATTGCATG
1 ATGGATTGCATG
45241229 ATGGATTGCATG
1 ATGGATTGCATG
45241241 AT
1 AT
45241243 TTTTCAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.35
Consensus pattern (12 bp):
ATGGATTGCATG
Found at i:45241317 original size:6 final size:6
Alignment explanation
Indices: 45241306--45241333 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
45241296 ATTCAAATCA
45241306 TATATG TATATG TATATG TATATG TATA
1 TATATG TATATG TATATG TATATG TATA
45241334 AACTCACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:45257045 original size:22 final size:22
Alignment explanation
Indices: 45257003--45257045 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
45256993 TGAGATTTTA
*
45257003 ATTAAATTTATTTATATTTAAG
1 ATTAAATTTATTTATAATTAAG
*
45257025 ATTAATTTTAATTT-TAATTAA
1 ATTAAATTT-ATTTATAATTAA
45257046 ATAATGCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTAAATTTATTTATAATTAAG
Found at i:45257346 original size:24 final size:25
Alignment explanation
Indices: 45257304--45257350 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
45257294 AATAAATGAA
45257304 ATTATATTATTTAAATAAATTTTCT
1 ATTATATTATTTAAATAAATTTTCT
* *
45257329 ATTA-ATTTTTTAATTAAATTTT
1 ATTATATTATTTAAATAAATTTT
45257351 TTATAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTATATTATTTAAATAAATTTTCT
Found at i:45257348 original size:13 final size:13
Alignment explanation
Indices: 45257303--45257353 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
45257293 AAATAAATGA
* *
45257303 AATTATATTATTT
1 AATTAAATTTTTT
* *
45257316 AAATAAATTTTCT
1 AATTAAATTTTTT
45257329 -ATT-AATTTTTT
1 AATTAAATTTTTT
45257340 AATTAAATTTTTT
1 AATTAAATTTTTT
45257353 A
1 A
45257354 TAAAAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
11 7 0.23
12 5 0.17
13 18 0.60
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
AATTAAATTTTTT
Found at i:45259744 original size:21 final size:21
Alignment explanation
Indices: 45259697--45259744 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
45259687 ATTGTTTTGT
* * *
45259697 TGTTTTTCCATGTTTTGCTAC
1 TGTTTTCCCATGTTTTCCCAC
* *
45259718 TATTTTCCCATTTTTTCCCAC
1 TGTTTTCCCATGTTTTCCCAC
45259739 TGTTTT
1 TGTTTT
45259745 GCTACCATAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.08, T:0.58
Consensus pattern (21 bp):
TGTTTTCCCATGTTTTCCCAC
Found at i:45262982 original size:46 final size:46
Alignment explanation
Indices: 45262911--45263553 Score: 789
Period size: 46 Copynumber: 13.6 Consensus size: 46
45262901 TTTGAGTACT
*
45262911 TCTGATCAAGTGACAAAGTGATAAGTAATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
* * *
45262957 TCTAATCAAGTAACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
45263003 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
*
45263049 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
*
45263095 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
* **
45263141 TCTGATCAAGTGACAAAGTGTTAAGTGGCAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
** *
45263187 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
45263233 TCTGATC-AGTGACAAGTAGAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTA
* * **
45263284 TCTGATCAAGTG-GAAAGTGATGAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
*
45263329 TCTGATC-AGTGACAAGTGGAAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTA
* * **
45263380 TCTGATCAAGTG-GAAAGTGATGAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
*
45263425 TCTGATC-AGTGACAAGTGGAAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTA
*
45263476 TCTGATC-AGTGACAAGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGAC-----A-AAGTGATAAGTGATAGCTTTAGCTACACTTA
* *
45263527 TCTAATC-AGGGA-AAAGTGATAAGTGAT
1 TCTGATCAAGTGACAAAGTGATAAGTGAT
45263554 CATACGCAAG
Statistics
Matches: 537, Mismatches: 37, Indels: 48
0.86 0.06 0.08
Matches are distributed among these distances:
44 22 0.04
45 80 0.15
46 267 0.50
50 3 0.01
51 157 0.29
52 8 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
Found at i:45268504 original size:40 final size:40
Alignment explanation
Indices: 45268446--45268732 Score: 398
Period size: 40 Copynumber: 7.2 Consensus size: 40
45268436 ATTTGAATGA
* *
45268446 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
45268486 TATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
45268526 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
45268566 TATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
45268606 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * *
45268646 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * *
45268686 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
45268726 TATCCGG
1 TATCCGG
45268733 CTAAATTCCG
Statistics
Matches: 228, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 223 0.98
41 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:45271163 original size:146 final size:147
Alignment explanation
Indices: 45270847--45271153 Score: 451
Period size: 146 Copynumber: 2.1 Consensus size: 147
45270837 AAATTTTGAT
* *
45270847 TTTTTTAAAAAAAAGAG-AGTTTAGATTTTTAAAATAAAAATATATTTTTTAGTTATATTAAAGG
1 TTTTTTAAAAAAAAGAGAATTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCATATTAAAGG
* * *
45270911 AAAATTTTAAATTTTTAAAACAAAATTCTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATT
66 AAAATTTTAAATTTTTAAAACAAAATTCTGATCTTGTACAACTATTTCAAAATAAAGCTTTGATT
45270976 TTTAAGAAAAATAGTGA
131 TTTAAGAAAAATAGTGA
* *
45270993 TTTTTTAAAAAAAAGAGAAATTTTAGATTTTTAAAAT-AAAA-ATA-TTTTTAGTCATTTTTAAG
1 TTTTTTAAAAAAAAGAG-AATTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCATATTAAAG
* * *
45271055 GAAAATTTTAAATTTTTTAAAACAAAGTTTTGATCTTGTACAACTATTTCGAAATAAAGCTTTGA
65 GAAAATTTTAAA-TTTTTAAAACAAAATTCTGATCTTGTACAACTATTTCAAAATAAAGCTTTGA
* *
45271120 TTTTTAAGAAAAGTAGTGG
129 TTTTTAAGAAAAATAGTGA
45271139 TTTTTTAAAGAAAAA
1 TTTTTTAAA-AAAAA
45271154 TTTGATTTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
145 27 0.19
146 92 0.63
147 9 0.06
148 17 0.12
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (147 bp):
TTTTTTAAAAAAAAGAGAATTTTAGATTTTTAAAATAAAAATATATTTTTTAGTCATATTAAAGG
AAAATTTTAAATTTTTAAAACAAAATTCTGATCTTGTACAACTATTTCAAAATAAAGCTTTGATT
TTTAAGAAAAATAGTGA
Found at i:45271773 original size:124 final size:125
Alignment explanation
Indices: 45271535--45271911 Score: 542
Period size: 125 Copynumber: 3.0 Consensus size: 125
45271525 TTAGGGTTTT
*
45271535 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTTTACC
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACC
* * * *
45271600 AGGATGCTTTATGAGAAGAATTTGTTAAATTGTGCCCACGTGGATGCGCTTTTGCTACAG
66 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * * *
45271660 TAGGTCCT-GAAAAAATTATTTCGAGTTGACGTTTTTGAGCAAATAGTATAAAAACGCTTCAAGC
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACC
* * *
45271724 AGGATGCTATT-TGAGAAGAATTTCTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAG
66 AGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * *
45271784 TTGATCTTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTACAAAATCGCTTCTACC
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACC
** *
45271849 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCATCCACGTGGACACGCTTTTGCTACAG
66 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
45271909 TAG
1 TAG
45271912 CATGTTTGGG
Statistics
Matches: 218, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
124 106 0.49
125 112 0.51
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (125 bp):
TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACC
AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
Found at i:45274140 original size:121 final size:121
Alignment explanation
Indices: 45273926--45274169 Score: 443
Period size: 121 Copynumber: 2.0 Consensus size: 121
45273916 TACAGGCAAT
* *
45273926 ATCCATCTAAGAGCGGATGACGACAAGTGACCAACATGGGTATTTAGTCTATATCTGTGTTATTT
1 ATCCATCTAAGAGCGAACGACGACAAGTGACCAACATGGGTATTTAGTCTATATCTGTGTTATTT
*
45273991 CGTTTGTCAATTTGAATTAGTTTTATTGGTAGAAGTGGTATAAATTATTTGCTATG
66 CGTTTGTCAATTTGAATTAGTTTTATTGGTAGAAGTGGTATAAATTATTCGCTATG
* *
45274047 ATCCATCTAAGAGTGAACGATGACAAGTGACCAACATGGGTATTTAGTCTATATCTGTGTTATTT
1 ATCCATCTAAGAGCGAACGACGACAAGTGACCAACATGGGTATTTAGTCTATATCTGTGTTATTT
45274112 CGTTTGTCAATTTGAATTAGTTTTATTGGTAGAAGTGGTATAAATTATTCGCTATG
66 CGTTTGTCAATTTGAATTAGTTTTATTGGTAGAAGTGGTATAAATTATTCGCTATG
45274168 AT
1 AT
45274170 ATTATATTGG
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
121 118 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (121 bp):
ATCCATCTAAGAGCGAACGACGACAAGTGACCAACATGGGTATTTAGTCTATATCTGTGTTATTT
CGTTTGTCAATTTGAATTAGTTTTATTGGTAGAAGTGGTATAAATTATTCGCTATG
Found at i:45289517 original size:45 final size:45
Alignment explanation
Indices: 45289468--45289636 Score: 214
Period size: 45 Copynumber: 3.6 Consensus size: 45
45289458 AATTAATCTC
45289468 ATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCT
1 ATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCT
** * * *
45289513 ATTTTATTACATCAAATAA-ACTTCTATTTTATTACATCAAATAAACTTCT
1 ATTTTATTACATCAAATAATA--TC-A--AAATAAC-TCAAAAAAATTTCT
*
45289563 ATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTAT
1 ATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCT
*
45289608 ATTTTATTACATAAAATAATATCAAAATA
1 ATTTTATTACATCAAATAATATCAAAATA
45289637 TTCAAAATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
44 1 0.01
45 58 0.55
46 6 0.06
47 1 0.01
48 1 0.01
49 6 0.06
50 31 0.30
51 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.38
Consensus pattern (45 bp):
ATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCT
Found at i:45289527 original size:25 final size:25
Alignment explanation
Indices: 45289499--45289581 Score: 148
Period size: 25 Copynumber: 3.3 Consensus size: 25
45289489 TCAAAATAAC
* *
45289499 TCAAAAAAATTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
45289524 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
45289549 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAACTTCTATTTTATTACA
45289574 TCAAATAA
1 TCAAATAA
45289582 TATCAAAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.42
Consensus pattern (25 bp):
TCAAATAAACTTCTATTTTATTACA
Found at i:45290093 original size:18 final size:18
Alignment explanation
Indices: 45290055--45290094 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
45290045 GACTCGGAAA
* *
45290055 AGGATACATATAAGGGTT
1 AGGATACATATAAGAGCT
45290073 AGGATACATATAAGAGCT
1 AGGATACATATAAGAGCT
45290091 AGGA
1 AGGA
45290095 AACGCACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.07, G:0.28, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGAGCT
Found at i:45292013 original size:11 final size:11
Alignment explanation
Indices: 45291999--45292071 Score: 73
Period size: 11 Copynumber: 6.5 Consensus size: 11
45291989 TTAAATATGG
45291999 ATTTGAGAGAA
1 ATTTGAGAGAA
45292010 ATTTG-GAAGAA
1 ATTTGAG-AGAA
45292021 ATTTGAGAGCAA
1 ATTTGAGAG-AA
45292033 A-TTGAGAGGAA
1 ATTTGAGA-GAA
45292044 ATTT-AGAGCAA
1 ATTTGAGAG-AA
45292055 A-TTGAGAGGAA
1 ATTTGAGA-GAA
45292066 ATTTGA
1 ATTTGA
45292072 AAGAGAATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
10 4 0.08
11 37 0.70
12 12 0.23
ACGTcount: A:0.44, C:0.03, G:0.27, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:45292024 original size:22 final size:23
Alignment explanation
Indices: 45291999--45292071 Score: 107
Period size: 22 Copynumber: 3.3 Consensus size: 23
45291989 TTAAATATGG
*
45291999 ATTTGAGAG-AAATTTG-GAAGAA
1 ATTTGAGAGCAAA-TTGAGAGGAA
45292021 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAGAGGAA
45292044 ATTT-AGAGCAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAGAGGAA
45292066 ATTTGA
1 ATTTGA
45292072 AAGAGAATTA
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
22 34 0.72
23 13 0.28
ACGTcount: A:0.44, C:0.03, G:0.27, T:0.26
Consensus pattern (23 bp):
ATTTGAGAGCAAATTGAGAGGAA
Found at i:45292060 original size:33 final size:33
Alignment explanation
Indices: 45292001--45292068 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
45291991 AAATATGGAT
*
45292001 TTGAGAGAAATTTGGAAGAAATTTGAGAGCAAA
1 TTGAGAGAAATTTAGAAGAAATTTGAGAGCAAA
*
45292034 TTGAGAGGAAATTTAG-AGCAAA-TTGAGAGGAAA
1 TTGAGA-GAAATTTAGAAG-AAATTTGAGAGCAAA
45292067 TT
1 TT
45292069 TGAAAGAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.44, C:0.03, G:0.28, T:0.25
Consensus pattern (33 bp):
TTGAGAGAAATTTAGAAGAAATTTGAGAGCAAA
Found at i:45295338 original size:9 final size:9
Alignment explanation
Indices: 45295324--45295395 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
45295314 TTTGGTTAAA
45295324 AATTACCCG
1 AATTACCCG
45295333 AATTACCCG
1 AATTACCCG
*
45295342 -ATTAACCG
1 AATTACCCG
* *
45295350 AATCAACCG
1 AATTACCCG
*
45295359 AATTAACCG
1 AATTACCCG
*
45295368 AATTACCCACA
1 AATTA-CC-CG
45295379 AATTACCCG
1 AATTACCCG
45295388 AATTACCC
1 AATTACCC
45295396 AAAAATTACC
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
8 7 0.13
9 38 0.70
10 3 0.06
11 6 0.11
ACGTcount: A:0.39, C:0.32, G:0.08, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:45295365 original size:18 final size:18
Alignment explanation
Indices: 45295324--45295370 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
45295314 TTTGGTTAAA
* * *
45295324 AATTACCCGAATTACCCG
1 AATTAACCGAATCAACCG
45295342 -ATTAACCGAATCAACCG
1 AATTAACCGAATCAACCG
45295359 AATTAACCGAAT
1 AATTAACCGAAT
45295371 TACCCACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.40, C:0.28, G:0.11, T:0.21
Consensus pattern (18 bp):
AATTAACCGAATCAACCG
Found at i:45295388 original size:20 final size:20
Alignment explanation
Indices: 45295359--45295406 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
45295349 GAATCAACCG
* *
45295359 AATTAACCGAATTACCCACA
1 AATTACCCGAATTACCCAAA
45295379 AATTACCCGAATTACCCAAA
1 AATTACCCGAATTACCCAAA
45295399 AATTACCC
1 AATTACCC
45295407 AAAAAATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.44, C:0.31, G:0.04, T:0.21
Consensus pattern (20 bp):
AATTACCCGAATTACCCAAA
Found at i:45295414 original size:12 final size:11
Alignment explanation
Indices: 45295368--45295411 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
45295358 GAATTAACCG
*
45295368 AATTACCCACA
1 AATTACCCAAA
*
45295379 AATTACCC--G
1 AATTACCCAAA
45295388 AATTACCCAAA
1 AATTACCCAAA
45295399 AATTACCCAAA
1 AATTACCCAAA
45295410 AA
1 AA
45295412 ATTTGGTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.28
11 21 0.72
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.18
Consensus pattern (11 bp):
AATTACCCAAA
Found at i:45302014 original size:19 final size:20
Alignment explanation
Indices: 45301986--45302037 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
45301976 AAAAAATATA
*
45301986 AAAAAATCAAAATAATTT-T
1 AAAAATTCAAAATAATTTAT
* *
45302005 TAAAATTC-AAATCATTTAT
1 AAAAATTCAAAATAATTTAT
45302024 AAAAATTCCAAAAT
1 AAAAATT-CAAAAT
45302038 TTATATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.31
19 13 0.50
20 1 0.04
21 4 0.15
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTAT
Found at i:45312337 original size:14 final size:13
Alignment explanation
Indices: 45312297--45312347 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
45312287 TTAAGTATAT
*
45312297 TATTATTTTATTA
1 TATTATTATATTA
* *
45312310 TATT-GTAAATTA
1 TATTATTATATTA
45312322 TATTAATTATATTA
1 TATT-ATTATATTA
45312336 TATTATTATATT
1 TATTATTATATT
45312348 TCAAATAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 9 0.29
13 12 0.39
14 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:45312614 original size:20 final size:19
Alignment explanation
Indices: 45312561--45312614 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
45312551 CAAAACAGAG
*
45312561 AAGGAAAGAAG-GAAAGGA
1 AAGGAAAGAAGAAAAAGGA
* *
45312579 AAGAAAAAGAAAAAAAAGGA
1 AAG-GAAAGAAGAAAAAGGA
45312599 AAGGAAAGGAAGAAAA
1 AAGGAAA-GAAGAAAA
45312615 TTTGGGATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 3 0.11
19 9 0.32
20 16 0.57
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAGAAAAAGGA
Found at i:45314290 original size:3 final size:3
Alignment explanation
Indices: 45314282--45314308 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
45314272 GAATTAAAAG
45314282 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
45314309 GTTGTTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:45323308 original size:44 final size:44
Alignment explanation
Indices: 45323245--45323375 Score: 210
Period size: 44 Copynumber: 3.0 Consensus size: 44
45323235 CGGTGAAACT
45323245 TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
1 TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* *
45323289 TAAGTCCTATCTCCTTGGTCAGTAGTGGAATAGGTTGAAGATTG
1 TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* *
45323333 CAAGTCCTATCTCCCT-GTGCAGCAGAGGAATAGGTTGAAGATT
1 TAAGTCCTATCTCCCTGGT-CAGCAGTGGAATAGGTTGAAGATT
45323376 ACAGATCTTA
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 2 0.03
44 78 0.98
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (44 bp):
TAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
Found at i:45323400 original size:88 final size:85
Alignment explanation
Indices: 45323246--45323591 Score: 250
Period size: 88 Copynumber: 4.0 Consensus size: 85
45323236 GGTGAAACTT
* **
45323246 AAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCCTATC-TCCTTGGT
1 AAGTCCTATCTCCCTGG-CAGCAG-GGAATAGGTTGAAGA-T-TACAGATCTTATCTTCCTAAG-
* * ** **
45323308 CAGTAGTGGAATAGGTTGAAGATTGC
61 CAGTAGTGGAACAGATCAAAGA-CCC
45323334 AAGTCCTATCTCCCTGTGCAGCAGAGGAATAGGTTGAAGATTACAGATCTTATCTTCCTAAGCAG
1 AAGTCCTATCTCCCTG-GCAGCAG-GGAATAGGTTGAAGATTACAGATCTTATCTTCCTAAGCAG
*
45323399 TAGTGGAGCAGATCAAAGACCC
64 TAGTGGAACAGATCAAAGACCC
* * * * *
45323421 CAG-CCTTGTCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCA
1 AAGTCC-TATCTCCCT-GGCAGCAGGGAA-TAGGTTGAAGATTACAGATCTTATCTTCCTAAGCA
* * *
45323485 GTAGTGGAGCAGATCGAAGTCCC
63 GTAGTGGAACAGATCAAAGACCC
* * * * ** * * * * * *
45323508 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATCTTATATCCCTAAGTA
1 AAG-TCCTATCTCCCT-GGCAGCAG-GGAATAGGTTGAAGATTACAGATCTTATCTTCCTAAGCA
* *
45323573 GTAGTGGCACAGATTAAAG
63 GTAGTGGAACAGATCAAAG
45323592 CCAATAATCC
Statistics
Matches: 215, Mismatches: 33, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
86 7 0.03
87 79 0.37
88 120 0.56
89 9 0.04
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (85 bp):
AAGTCCTATCTCCCTGGCAGCAGGGAATAGGTTGAAGATTACAGATCTTATCTTCCTAAGCAGTA
GTGGAACAGATCAAAGACCC
Found at i:45323463 original size:87 final size:88
Alignment explanation
Indices: 45323340--45323579 Score: 313
Period size: 87 Copynumber: 2.7 Consensus size: 88
45323330 TTGCAAGTCC
** * *
45323340 TATCTCCCTGTGCAGCAGAGGAA-TAGGTTGAAGATTACAGATCTTATCTTCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGCAG-TGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTG
45323404 GAGCAGATCAAAGACCCCAG-CCT
65 GAGCAGATCAAAGACCCCAGACCT
*
45323427 TGTCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
* * *
45323492 AGCAGATCGAAGTCCCCAGATCT
66 AGCAGATCAAAGACCCCAGACCT
* * * * * * * *
45323515 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAGATCTTATATCCCTAAGTAGTAGTGG
1 TATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
45323580 CACAGATTAA
Statistics
Matches: 134, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
86 3 0.02
87 73 0.54
88 58 0.43
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (88 bp):
TATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCAAAGACCCCAGACCT
Found at i:45323586 original size:44 final size:44
Alignment explanation
Indices: 45323369--45323579 Score: 246
Period size: 44 Copynumber: 4.8 Consensus size: 44
45323359 GGAATAGGTT
* *
45323369 GAAGATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * * * * * * * * *
45323413 AAAGACCCCAG-CCTTGTCTCCCTAAGCAGCAGTGAAGTAGGTT
1 GAAGATCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
45323456 GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGATCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
45323500 GAAG-TCCCCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 GAAGAT-CACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * *
45323544 GAAGATGACAGATCTTATATCCCTAAGTAGTAGTGG
1 GAAGATCACAGATCTTATCTCCCTAAGCAGTAGTGG
45323580 CACAGATTAA
Statistics
Matches: 135, Mismatches: 29, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
43 32 0.24
44 102 0.76
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (44 bp):
GAAGATCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
Found at i:45323705 original size:85 final size:85
Alignment explanation
Indices: 45323610--45323885 Score: 304
Period size: 85 Copynumber: 3.2 Consensus size: 85
45323600 CCTATTTCCT
*
45323610 TGAGGTTACAGCGGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAAT
1 TGAGGTTACAGTGGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAAT
*
45323675 CGCATCAAGTCTTATCTCCA
66 CGCATCAAGTCTTATCTCCC
* * * * * * * * * * * * *
45323695 TGAGGTTACAGTGGAGCAGACT-GAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGTGGGGCAGA
1 TGAGGTTACAGTGGAGCGGATTAAAATAA-CAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAA
* *
45323759 -CCCAAAATGACAAATCTTATCTCCC
65 TCGC---AT--CAAGTCTTATCTCCC
* *
45323784 TGAAGTTGCAGTGGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAAT
1 TGAGGTTACAGTGGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAAT
45323849 CGCATCAAGTCTTATCTCCC
66 CGCATCAAGTCTTATCTCCC
*
45323869 TGAGGTTATAGTGGAGC
1 TGAGGTTACAGTGGAGC
45323886 AGACTGAATA
Statistics
Matches: 146, Mismatches: 37, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
84 7 0.05
85 72 0.49
87 4 0.03
89 56 0.38
90 7 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (85 bp):
TGAGGTTACAGTGGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAAT
CGCATCAAGTCTTATCTCCC
Found at i:45323809 original size:174 final size:173
Alignment explanation
Indices: 45323622--45323969 Score: 642
Period size: 174 Copynumber: 2.0 Consensus size: 173
45323612 AGGTTACAGC
45323622 GGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAATCGCATCAAGTCT
1 GGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAATCGCATCAAGTCT
45323687 TATCTCCATGAGGTTACAGTGGAGCAGACTGAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGTG
66 TATCTCCATGAGGTTACAGTGGAGCAGACTGAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGT-
45323752 GGGCAGACCCAAAATGACAAATCTTATCTCCCTGAAGTTGCAGT
130 GGGCAGACCCAAAATGACAAATCTTATCTCCCTGAAGTTGCAGT
45323796 GGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAATCGCATCAAGTCT
1 GGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAATCGCATCAAGTCT
* *
45323861 TATCTCCCTGAGGTTATAGTGGAGCAGACTGAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGTG
66 TATCTCCATGAGGTTACAGTGGAGCAGACTGAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGTG
* * *
45323926 GGCAGACCCAAAATGACGAATCTTATCTCCTTGAAGTTGTAGT
131 GGCAGACCCAAAATGACAAATCTTATCTCCCTGAAGTTGCAGT
45323969 G
1 G
45323970 AAGTAGATTT
Statistics
Matches: 169, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
173 42 0.25
174 127 0.75
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (173 bp):
GGAGCGGATTAAAATAACAGATCTTATCTCTCTGAAGTGGCAGTAGAGTAAATCGCATCAAGTCT
TATCTCCATGAGGTTACAGTGGAGCAGACTGAATAAGCAGGTTTTATCCCCCGGAAGTTGCAGTG
GGCAGACCCAAAATGACAAATCTTATCTCCCTGAAGTTGCAGT
Found at i:45323918 original size:85 final size:85
Alignment explanation
Indices: 45323655--45323924 Score: 292
Period size: 85 Copynumber: 3.1 Consensus size: 85
45323645 TTATCTCTCT
*
45323655 GAAGTGGCAGTAGAGTAAATCGCATCAAGTCTTATCTCCATGAGGTTACAGTGGAGCAGACTGAA
1 GAAGTGGCAGTAGAGTAAATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAA
45323720 TAAGCAGGTTTTATCCCCCG
66 TAAGCAGGTTTTATCCCCCG
* * * * * * * * * *
45323740 GAAGTTGCAGTGGGGCAGA-CCCAAAATGACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGA
1 GAAGTGGCAGTAGAGTAAATCGC---AT--CAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGA
* * * * * * *
45323804 TTAAAATAA-CAGATCTTATCTCTCT
61 CT-GAATAAGCAGGTTTTATCCCCCG
*
45323829 GAAGTGGCAGTAGAGTAAATCGCATCAAGTCTTATCTCCCTGAGGTTATAGTGGAGCAGACTGAA
1 GAAGTGGCAGTAGAGTAAATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAA
45323894 TAAGCAGGTTTTATCCCCCG
66 TAAGCAGGTTTTATCCCCCG
*
45323914 GAAGTTGCAGT
1 GAAGTGGCAGT
45323925 GGGCAGACCC
Statistics
Matches: 140, Mismatches: 37, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
84 7 0.05
85 66 0.47
87 4 0.03
89 56 0.40
90 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (85 bp):
GAAGTGGCAGTAGAGTAAATCGCATCAAGTCTTATCTCCCTGAGGTTACAGTGGAGCAGACTGAA
TAAGCAGGTTTTATCCCCCG
Found at i:45324037 original size:44 final size:44
Alignment explanation
Indices: 45323508--45324054 Score: 208
Period size: 44 Copynumber: 12.6 Consensus size: 44
45323498 TCGAAGTCCC
** * * * *
45323508 CAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAAATAA
* * * * **
45323552 CAGATCTTATATCCCT-AAGTAGTAGTGGCA-CAGATTAAAGCCAA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGG-AGCAGACTAAA-ATAA
* * * * * * * * *
45323596 TA-ATCCTATTTCCTTGAGGTTACAGCGGAGCGGATTAAAATAA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* * * * * *** *
45323639 CAGATCTTATCTCTCTGAAGTGGCAGTAGAGTA-AATCGCATCA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* * * *
45323682 -AG-TCTTATCTCCATGAGGTTACAGTGGAGCAGACT-GAATAA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* * * * * * *
45323723 GCAGGTTTTATCCCCCGGAAGTTGCAGTGGGGCAGACCCAAAATGA
1 -CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAAATAA
* * *
45323769 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* * * * * *** *
45323813 CAGATCTTATCTCTCTGAAGTGGCAGTAGAGTA-AATCGCATCA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* ** *
45323856 -AG-TCTTATCTCCCTGAGGTTATAGTGGAGCAGACT-GAATAA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* * * * * *
45323897 GCAGGTTTTATCCCCCGGAAGTTGCAGTGG-GCAGACCCAAAATGA
1 -CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAAATAA
* * * * * **
45323942 C-GAATCTTATCTCCTTGAAGTTGTAGTGAAGTAGATTTAAGCCT-A
1 CAG-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAA-AATAA
* * * *
45323987 TA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCA
1 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
* *
45324030 CAGATCTTAGCTCTCTGAAGTTGCA
1 CAGATCTTATCTCCCTGAAGTTGCA
45324055 AAGAGCAGAT
Statistics
Matches: 359, Mismatches: 121, Indels: 46
0.68 0.23 0.09
Matches are distributed among these distances:
41 52 0.14
42 9 0.03
43 42 0.12
44 210 0.58
45 41 0.11
46 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATAA
Found at i:45332686 original size:45 final size:45
Alignment explanation
Indices: 45332621--45332765 Score: 175
Period size: 45 Copynumber: 3.2 Consensus size: 45
45332611 TGATCGTTAA
*
45332621 GTATCTTTCAACTATAGTCTTACGCATTTCCGGTTTAGTGCCATG
1 GTATCTTTCAACTATAGTCTTACTCATTTCCGGTTTAGTGCCATG
* * ** *
45332666 GTATCTTTCAACTATGGTCTTATTCA-TTCTTGTTTAGTGCCATA
1 GTATCTTTCAACTATAGTCTTACTCATTTCCGGTTTAGTGCCATG
* * ** *
45332710 GTATCTTTCAACTATAGTCTTTCTCATTTCGGGTAAAATGCCATG
1 GTATCTTTCAACTATAGTCTTACTCATTTCCGGTTTAGTGCCATG
*
45332755 ATATCTTTCAA
1 GTATCTTTCAA
45332766 TCATGGTCTT
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 38 0.46
45 45 0.54
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (45 bp):
GTATCTTTCAACTATAGTCTTACTCATTTCCGGTTTAGTGCCATG
Found at i:45333168 original size:109 final size:109
Alignment explanation
Indices: 45332972--45333186 Score: 403
Period size: 109 Copynumber: 2.0 Consensus size: 109
45332962 GTTTCTTGAT
* *
45332972 CTAGGTAATACATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
1 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
*
45333037 ACCCTTATCAATATGAATTTACAAAATTACCTCTACATTTTTAC
66 ACCCTTATCAATATGAATTTACAAAATTACCTCCACATTTTTAC
45333081 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
1 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
45333146 ACCCTTATCAATATGAATTTACAAAATTACCTCCACATTTT
66 ACCCTTATCAATATGAATTTACAAAATTACCTCCACATTTT
45333187 AACCATTATG
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
109 103 1.00
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.35
Consensus pattern (109 bp):
CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
ACCCTTATCAATATGAATTTACAAAATTACCTCCACATTTTTAC
Done.