Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 141 of 208
Found at i:45943103 original size:27 final size:27
Alignment explanation
Indices: 45943048--45943120 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
45943038 AATTAATCGA
*
45943048 TTAACCGATTTAACCGA-TTAACTGAT
1 TTAACCGATTTAACCGATTTAACTAAT
*
45943074 TTAACCGATTTAACTGATTTAACTAAT
1 TTAACCGATTTAACCGATTTAACTAAT
*
45943101 TTAATCGATTTAACCGATTT
1 TTAACCGATTTAACCGATTT
45943121 TCTATATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 16 0.38
27 26 0.62
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (27 bp):
TTAACCGATTTAACCGATTTAACTAAT
Found at i:45943850 original size:25 final size:25
Alignment explanation
Indices: 45943820--45943954 Score: 85
Period size: 25 Copynumber: 5.6 Consensus size: 25
45943810 TGGTAAATGG
45943820 TAATTGGGTTTGGGTAGACTTTAGT
1 TAATTGGGTTTGGGTAGACTTTAGT
* * *
45943845 TCATTGGG-TT-GGTA-A--AT-GG
1 TAATTGGGTTTGGGTAGACTTTAGT
45943864 TAATTGGGTTTGGGTAGACTTTAGT
1 TAATTGGGTTTGGGTAGACTTTAGT
* *
45943889 TTATTGGG-TT-GGT--ACTTGGTAAATGG
1 TAATTGGGTTTGGGTAGACTT--T--A-GT
45943915 TAATTGGGTTTGGGTAGACTTTAGT
1 TAATTGGGTTTGGGTAGACTTTAGT
* *
45943940 TTATTAGG-TTGGGTA
1 TAATTGGGTTTGGGTA
45943955 ATTGGGTTTA
Statistics
Matches: 83, Mismatches: 12, Indels: 31
0.66 0.10 0.25
Matches are distributed among these distances:
19 8 0.10
20 3 0.04
21 8 0.10
22 2 0.02
23 8 0.10
24 12 0.14
25 23 0.28
26 9 0.11
27 2 0.02
28 4 0.05
30 4 0.05
ACGTcount: A:0.20, C:0.04, G:0.33, T:0.43
Consensus pattern (25 bp):
TAATTGGGTTTGGGTAGACTTTAGT
Found at i:45943857 original size:44 final size:44
Alignment explanation
Indices: 45943790--45943951 Score: 234
Period size: 44 Copynumber: 3.5 Consensus size: 44
45943780 TCTTTAGTTT
*
45943790 TAGACTTTAGTTTATTGGATTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
*
45943834 TAGACTTTAGTTCATTGGGTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
45943878 TAGACTTTAGTTTATTGGGTTGGTACTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATT--G--GG---TTGGTAAATGGTAATTGGGTTTGGG
*
45943929 TAGACTTTAGTTTATTAGGTTGG
1 TAGACTTTAGTTTATTGGGTTGG
45943952 GTAATTGGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
44 61 0.57
46 1 0.01
47 2 0.02
48 2 0.02
51 41 0.38
ACGTcount: A:0.21, C:0.04, G:0.32, T:0.43
Consensus pattern (44 bp):
TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
Found at i:45943908 original size:51 final size:51
Alignment explanation
Indices: 45943853--45943951 Score: 189
Period size: 51 Copynumber: 1.9 Consensus size: 51
45943843 GTTCATTGGG
*
45943853 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
1 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTAGGTTGGTAC
45943904 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTAGGTTGG
1 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTAGGTTGG
45943952 GTAATTGGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (51 bp):
TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTAGGTTGGTAC
Found at i:45948786 original size:14 final size:14
Alignment explanation
Indices: 45948767--45948797 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
45948757 ATAATACCAA
45948767 CAAATACAACAAAG
1 CAAATACAACAAAG
45948781 CAAATACAACAAAG
1 CAAATACAACAAAG
45948795 CAA
1 CAA
45948798 GGCTTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.06, T:0.06
Consensus pattern (14 bp):
CAAATACAACAAAG
Found at i:45953241 original size:51 final size:51
Alignment explanation
Indices: 45953146--45953243 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
45953136 ATGTGTCAAT
* * * ***
45953146 TTGGTCTTGATTTAATAAATTTAGCCCACAACATTTATGTATTTTGTTAAC
1 TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGTTAAC
*
45953197 TTGGTCCTAATTTAACAAATTTAGCCCATAACATTTACCCATTTTGT
1 TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGT
45953244 CAACATTTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (51 bp):
TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGTTAAC
Found at i:45969673 original size:48 final size:48
Alignment explanation
Indices: 45969620--45969716 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
45969610 AACAATCACG
* *
45969620 AATTAAACACAAAATTAGAAACAATTTCTTATTTTCAGTAGGAAAGTA
1 AATTAAACACAAAACTAGAAACAATTTCTTACTTTCAGTAGGAAAGTA
45969668 AATTAAACACAAAACTAGAAACAATTTCTTACTTTCAGTAGGAAAGTA
1 AATTAAACACAAAACTAGAAACAATTTCTTACTTTCAGTAGGAAAGTA
45969716 A
1 A
45969717 TTCTCTTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.29
Consensus pattern (48 bp):
AATTAAACACAAAACTAGAAACAATTTCTTACTTTCAGTAGGAAAGTA
Found at i:45970158 original size:16 final size:16
Alignment explanation
Indices: 45970139--45970188 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
45970129 CAAAATAAAT
45970139 ATTTTTAATTAATTTA
1 ATTTTTAATTAATTTA
45970155 A--TTTAATTAA-TTA
1 ATTTTTAATTAATTTA
*
45970168 ATTTTATAATTAATTAA
1 ATTTT-TAATTAATTTA
45970185 ATTT
1 ATTT
45970189 CTCAACCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.14
14 9 0.31
15 2 0.07
16 8 0.28
17 6 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTAATTAATTTA
Found at i:45970166 original size:18 final size:16
Alignment explanation
Indices: 45970143--45970184 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
45970133 ATAAATATTT
*
45970143 TTAATTAATTTAATTTAA
1 TTAATTAATTT--TATAA
45970161 TTAATTAATTTTATAA
1 TTAATTAATTTTATAA
45970177 TTAATTAA
1 TTAATTAA
45970185 ATTTCTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.52
18 11 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAATTAATTTTATAA
Found at i:45970179 original size:12 final size:13
Alignment explanation
Indices: 45970142--45970187 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
45970132 AATAAATATT
45970142 TTTAATTAATTTAA
1 TTTAATTAA-TTAA
45970156 TTTAATTAATTAA
1 TTTAATTAATTAA
*
45970169 TTTTA-TAATTAA
1 TTTAATTAATTAA
*
45970181 TTAAATT
1 TTTAATT
45970188 TCTCAACCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 10 0.36
13 9 0.32
14 9 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:45973219 original size:57 final size:57
Alignment explanation
Indices: 45973150--45973272 Score: 167
Period size: 57 Copynumber: 2.1 Consensus size: 57
45973140 TCTTATTATT
*
45973150 TCCATTTCCATTTTCATTTTGAACAAAACCACATTCATTTCCAAATGATTTC-ATTTC
1 TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATG-TTTCAATTTC
* * * **
45973207 TCCATTTTCATTTTCATTTTGGAGAAAACCTTAATCATTTCCAAATGTTTCATATTTC
1 TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATGTTTCA-ATTTC
45973265 TCCATTTC
1 TCCATTTC
45973273 TCCATTTCTC
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
56 4 0.07
57 41 0.72
58 12 0.21
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.45
Consensus pattern (57 bp):
TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATGTTTCAATTTC
Found at i:45973273 original size:8 final size:8
Alignment explanation
Indices: 45973260--45973289 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
45973250 AATGTTTCAT
45973260 ATTTCTCC
1 ATTTCTCC
45973268 ATTTCTCC
1 ATTTCTCC
45973276 ATTTCTCC
1 ATTTCTCC
45973284 ATTTCT
1 ATTTCT
45973290 ATTCATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.33, G:0.00, T:0.53
Consensus pattern (8 bp):
ATTTCTCC
Found at i:45978866 original size:39 final size:40
Alignment explanation
Indices: 45978771--45978993 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
45978761 TTGAATGATG
*
45978771 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
45978809 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
45978850 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
45978889 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
45978928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
45978967 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
45978994 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:45978957 original size:79 final size:81
Alignment explanation
Indices: 45978771--45978993 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
45978761 TTGAATGATG
* * *
45978771 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
45978833 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
45978850 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
45978911 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
45978928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
45978992 TG
66 TG
45978994 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:45979015 original size:79 final size:79
Alignment explanation
Indices: 45978771--45979026 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
45978761 TTGAATGATG
* * * *
45978771 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
45978832 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
45978850 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
45978914 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
45978928 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
45978991 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
45979008 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45979027 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:45992326 original size:12 final size:12
Alignment explanation
Indices: 45992298--45992333 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
45992288 GCAAATGAAT
*
45992298 CATTTCTCATTTT
1 CATTTC-CATTTC
45992311 CATTTCCATTTC
1 CATTTCCATTTC
45992323 CATTTCCATTT
1 CATTTCCATTT
45992334 TGAGAAAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (12 bp):
CATTTCCATTTC
Found at i:45992332 original size:18 final size:19
Alignment explanation
Indices: 45992298--45992333 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45992288 GCAAATGAAT
*
45992298 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTCCATTTC
45992317 CATTTC-CATTTCCATTT
1 CATTTCTCATTTCCATTT
45992334 TGAGAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.56
Consensus pattern (19 bp):
CATTTCTCATTTCCATTTC
Found at i:45995203 original size:38 final size:38
Alignment explanation
Indices: 45995161--45995238 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
45995151 CAAGAGAAAG
45995161 AGTATCATGTCCTTTGAATCTTTTATGATCAATACTTT
1 AGTATCATGTCCTTTGAATCTTTTATGATCAATACTTT
*
45995199 AGTATCATGTCCTTTGACTCTTTTATGATCAATACTTT
1 AGTATCATGTCCTTTGAATCTTTTATGATCAATACTTT
45995237 AG
1 AG
45995239 CTAATTCCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.46
Consensus pattern (38 bp):
AGTATCATGTCCTTTGAATCTTTTATGATCAATACTTT
Found at i:46000717 original size:20 final size:20
Alignment explanation
Indices: 46000682--46000730 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
46000672 GTCATGGTCT
*
46000682 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
46000701 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
46000721 TTGCTTACTT
1 TTGCTTACTT
46000731 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:46007438 original size:25 final size:24
Alignment explanation
Indices: 46007410--46007457 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
46007400 GTAATTAACG
*
46007410 GGAAGCTCATGAGAGCCATATATCA
1 GGAAGCTCAAGAGAGCCA-ATATCA
46007435 GGAAGCTCAAGAGAGCCAATATC
1 GGAAGCTCAAGAGAGCCAATATC
46007458 GGGATGCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (24 bp):
GGAAGCTCAAGAGAGCCAATATCA
Found at i:46013844 original size:74 final size:73
Alignment explanation
Indices: 46013668--46013852 Score: 219
Period size: 73 Copynumber: 2.5 Consensus size: 73
46013658 GACTTAGGTT
* * * *
46013668 ACACGACCAAGCTACACGCTCGTGTGCTAGGTCGTGTGAGCATACTGACTTGCAATAAATAGGTG
1 ACACGGCCAAGCTACACGCCCGTGTGCTAGGCCGTGTGAGCATACTGACTTGCAATAAATAGATG
*
46013733 CAGGGGTC
66 CAGGGGAC
* * * * ** *
46013741 ACACGGCCAAGCCACATGCCCGTTTGCTAGGCCGTGTGAGCATTCTGTTTTGCAATTTTAA-AGA
1 ACACGGCCAAGCTACACGCCCGTGTGCTAGGCCGTGTGAGCATACTGACTTGCAA--TAAATAGA
46013805 TGCAGGGGAC
64 TGCAGGGGAC
* *
46013815 ACACGGCCAAACTACACGCCCATGTGCTAGGCCGTGTG
1 ACACGGCCAAGCTACACGCCCGTGTGCTAGGCCGTGTG
46013853 TCACACATGG
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
73 46 0.49
74 44 0.47
75 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (73 bp):
ACACGGCCAAGCTACACGCCCGTGTGCTAGGCCGTGTGAGCATACTGACTTGCAATAAATAGATG
CAGGGGAC
Found at i:46014882 original size:25 final size:24
Alignment explanation
Indices: 46014831--46014882 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
46014821 CATACGAGCA
* * *
46014831 CATAAACGAGAAGCTCTTTTGAGC
1 CATAAACGAGAAGCTCATGTGAAC
*
46014855 CATATAACGGGAAGCTCATGTGAAC
1 CATA-AACGAGAAGCTCATGTGAAC
46014880 CAT
1 CAT
46014883 GTAATAGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (24 bp):
CATAAACGAGAAGCTCATGTGAAC
Found at i:46015151 original size:24 final size:24
Alignment explanation
Indices: 46015067--46015175 Score: 71
Period size: 24 Copynumber: 4.5 Consensus size: 24
46015057 ATCACAACCA
*
46015067 ATCGGGATGCTCAAAAGAGC-AATT
1 ATCGGGATGCTCAAGAGAGCTAA-T
* * * ** *
46015091 AACGAGAAGCTCGTGAGAGCCACAT
1 ATCGGGATGCTCAAGAGAGCTA-AT
* *
46015116 ATCAGGAAGCTCAAGAGAG-TGAAT
1 ATCGGGATGCTCAAGAGAGCT-AAT
*
46015140 ATCGGGATGCTCATGAGAGCTAAT
1 ATCGGGATGCTCAAGAGAGCTAAT
46015164 AAT-GGGATGCTC
1 -ATCGGGATGCTC
46015176 TTACGAGCTG
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
24 44 0.68
25 20 0.31
26 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (24 bp):
ATCGGGATGCTCAAGAGAGCTAAT
Found at i:46017500 original size:13 final size:13
Alignment explanation
Indices: 46017484--46017526 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
46017474 AGAAAGCAAT
46017484 TAAAATAAATAAA
1 TAAAATAAATAAA
46017497 T-AAATAAGATAAA
1 TAAAATAA-ATAAA
46017510 TAAAATAGAA-AAA
1 TAAAATA-AATAAA
46017523 TAAA
1 TAAA
46017527 TCAAATATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.22
13 14 0.52
14 6 0.22
15 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (13 bp):
TAAAATAAATAAA
Found at i:46017525 original size:17 final size:15
Alignment explanation
Indices: 46017485--46017533 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 15
46017475 GAAAGCAATT
46017485 AAAATAAATAAATAA
1 AAAATAAATAAATAA
46017500 ATAAGATAAATAAAATAGA
1 A-AA-ATAAAT-AAATA-A
46017519 AAAATAAATCAAATA
1 AAAATAAAT-AAATA
46017534 TTAGAACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 1 0.03
16 2 0.07
17 17 0.59
18 7 0.24
19 2 0.07
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (15 bp):
AAAATAAATAAATAA
Found at i:46017532 original size:5 final size:4
Alignment explanation
Indices: 46017486--46017533 Score: 53
Period size: 4 Copynumber: 11.2 Consensus size: 4
46017476 AAAGCAATTA
46017486 AAAT AAAT AAAT AAAT AAGAT AAAT AAAAT AGAA- AAAT AAAT CAAAT
1 AAAT AAAT AAAT AAAT AA-AT AAAT -AAAT A-AAT AAAT AAAT -AAAT
46017533 A
1 A
46017534 TTAGAACAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
3 2 0.05
4 23 0.59
5 14 0.36
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:46022929 original size:23 final size:23
Alignment explanation
Indices: 46022903--46022947 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
46022893 AGTGTTATTG
*
46022903 ATCAGTGGTAGCTTCGGCTACAC
1 ATCAGTGGTAACTTCGGCTACAC
46022926 ATCAGTGGTAACTTCGGCTACA
1 ATCAGTGGTAACTTCGGCTACA
46022948 TATCTGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (23 bp):
ATCAGTGGTAACTTCGGCTACAC
Found at i:46024729 original size:23 final size:23
Alignment explanation
Indices: 46024703--46024803 Score: 166
Period size: 23 Copynumber: 4.4 Consensus size: 23
46024693 GGTCGTATCA
46024703 ATATCAGTGGTAGCTTCGGCTAC
1 ATATCAGTGGTAGCTTCGGCTAC
46024726 ATATCAGTGGTAGCTTCGGCTAC
1 ATATCAGTGGTAGCTTCGGCTAC
* * *
46024749 ATTTCAATGGAAGCTTCGGCTAC
1 ATATCAGTGGTAGCTTCGGCTAC
*
46024772 ATTTCAGTGGTAGCTTCGGCTAC
1 ATATCAGTGGTAGCTTCGGCTAC
46024795 ATATCAGTG
1 ATATCAGTG
46024804 TGGCACTTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
ATATCAGTGGTAGCTTCGGCTAC
Found at i:46024975 original size:38 final size:37
Alignment explanation
Indices: 46024933--46025005 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
46024923 ATGTACGGAA
* *
46024933 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
46024971 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
46025006 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:46028749 original size:27 final size:27
Alignment explanation
Indices: 46028718--46028780 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
46028708 AAAGGTTTTT
46028718 AAATGATCGAAATA-CCCTCAAAGGGTA
1 AAATGATCGAAATACCCCT-AAAGGGTA
* * *
46028745 AAATGACCAAAATACCCCTAACGGGTA
1 AAATGATCGAAATACCCCTAAAGGGTA
*
46028772 AAATTATCG
1 AAATGATCG
46028781 TTTTACCCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATGATCGAAATACCCCTAAAGGGTA
Found at i:46030476 original size:21 final size:20
Alignment explanation
Indices: 46030435--46030490 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 20
46030425 TTTTATTACT
46030435 AGTGGTTTATCCAC--AATG
1 AGTGGTTTATCCACAAAATG
*
46030453 AGTGGTTCATCCACAAAGATG
1 AGTGGTTTATCCACAAA-ATG
46030474 AGTGGTTTTATCCACAA
1 AGTGG-TTTATCCACAA
46030491 CGTAGTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 13 0.41
20 1 0.03
21 8 0.25
22 10 0.31
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTGGTTTATCCACAAAATG
Found at i:46032664 original size:26 final size:27
Alignment explanation
Indices: 46032605--46032658 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
46032595 GGACATGTTG
* *
46032605 AATTCTAGCATGCATTCGGACACTTAAA
1 AATTC-AGCATACATTCGAACACTTAAA
46032633 AATTCAGCATACATTCGAACA-TTAAA
1 AATTCAGCATACATTCGAACACTTAAA
46032659 TTTTCACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (27 bp):
AATTCAGCATACATTCGAACACTTAAA
Found at i:46034776 original size:21 final size:21
Alignment explanation
Indices: 46034752--46034792 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46034742 ACTAGCCAAC
*
46034752 TTATTTGAAAATAATTAAATT
1 TTATTTGAAAATAAGTAAATT
*
46034773 TTATTTTAAAATAAGTAAAT
1 TTATTTGAAAATAAGTAAAT
46034793 GTTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
TTATTTGAAAATAAGTAAATT
Found at i:46039031 original size:27 final size:27
Alignment explanation
Indices: 46038984--46039048 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
46038974 AGTCTGTTGA
* ** *
46038984 GACAGTAAACATGGGGTAGTCCGCTGG
1 GACAGTAAACATGAGAAAGTCCACTGG
* *
46039011 GATAGTAAACATGAGAAAGTCCATTGG
1 GACAGTAAACATGAGAAAGTCCACTGG
46039038 GACAGTAAACA
1 GACAGTAAACA
46039049 CAAGGTAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.18
Consensus pattern (27 bp):
GACAGTAAACATGAGAAAGTCCACTGG
Found at i:46045581 original size:18 final size:18
Alignment explanation
Indices: 46045558--46045592 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
46045548 GAAACTCTAT
46045558 ATCCTTC-AGGGATTTTAA
1 ATCCTTCTA-GGATTTTAA
46045576 ATCCTTCTAGGATTTTA
1 ATCCTTCTAGGATTTTA
46045593 TATAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (18 bp):
ATCCTTCTAGGATTTTAA
Found at i:46047093 original size:28 final size:27
Alignment explanation
Indices: 46047050--46047382 Score: 369
Period size: 28 Copynumber: 11.9 Consensus size: 27
46047040 TAGTGATAGT
*
46047050 ACAGTGTGGGCTTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAA-A
* *
46047078 ACAGTATGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACA-AA
46047106 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAGCCCAATACA-AA
* * * *
46047134 TCAGTGTGGGCATTAACCCAATATGAAA
1 ACAGTGTGGGCCTTAGCCCAATA-CAAA
*
46047162 TCAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAA-A
* * *
46047190 ACAGTATGGGCCTTAGCCTAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACA-AA
46047218 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTTAGCCCAATACA-AA
* * * *
46047246 TCAGTGTGGGCATTAACCCAATATGAAA
1 ACAGTGTGGGCCTTAGCCCAATA-CAAA
**
46047274 TTAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAA-A
* *
46047302 ACAGTGTGGGACTTAGTCCAATACAAA
1 ACAGTGTGGGCCTTAGCCCAATACAAA
*
46047329 ATCAGTGTGGTCCTTAGCCCAATACAAA
1 A-CAGTGTGGGCCTTAGCCCAATACAAA
* *
46047357 ATCAGTGTGGTCCTTAGCCTAATACA
1 A-CAGTGTGGGCCTTAGCCCAATACA
46047383 GTAACAATGC
Statistics
Matches: 263, Mismatches: 35, Indels: 14
0.84 0.11 0.04
Matches are distributed among these distances:
27 6 0.02
28 255 0.97
29 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (27 bp):
ACAGTGTGGGCCTTAGCCCAATACAAA
Found at i:46047192 original size:112 final size:112
Alignment explanation
Indices: 46047051--46047366 Score: 535
Period size: 112 Copynumber: 2.8 Consensus size: 112
46047041 AGTGATAGTA
*
46047051 CAGTGTGGGCTTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAACAGTGTGGG
1 CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAACAGTGTGGG
46047116 CCTTAGCCCAATACAGAATCAGTGTGGGCATTAACCCAATATGAAAT
66 CCTTAGCCCAATACAGAATCAGTGTGGGCATTAACCCAATATGAAAT
*
46047163 CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCTAATACAGTAACAGTGTGGG
1 CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAACAGTGTGGG
46047228 CCTTAGCCCAATACAGAATCAGTGTGGGCATTAACCCAATATGAAAT
66 CCTTAGCCCAATACAGAATCAGTGTGGGCATTAACCCAATATGAAAT
* * * * *
46047275 TAGTGTGGGCCTTAGCCCAATACAATAACAGTGTGGGACTTAGTCCAATACA-AAATCAGTGTGG
1 CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAA-CAGTGTGG
* *
46047339 TCCTTAGCCCAATACAAAATCAGTGTGG
65 GCCTTAGCCCAATACAGAATCAGTGTGG
46047367 TCCTTAGCCT
Statistics
Matches: 193, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
111 2 0.01
112 191 0.99
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (112 bp):
CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAACAGTGTGGG
CCTTAGCCCAATACAGAATCAGTGTGGGCATTAACCCAATATGAAAT
Found at i:46047946 original size:9 final size:9
Alignment explanation
Indices: 46047932--46047981 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
46047922 TATTTTTCGA
*
46047932 TAATTCGGT
1 TAATTCGGG
*
46047941 TAATTCGGT
1 TAATTCGGG
46047950 TAATTCGGG
1 TAATTCGGG
46047959 TAATTCGGG
1 TAATTCGGG
46047968 TAATTCGGG
1 TAATTCGGG
46047977 TAATT
1 TAATT
46047982 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (9 bp):
TAATTCGGG
Found at i:46048159 original size:12 final size:12
Alignment explanation
Indices: 46048142--46048166 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46048132 AGTAATTTCG
46048142 GGTCGGTTAACC
1 GGTCGGTTAACC
46048154 GGTCGGTTAACC
1 GGTCGGTTAACC
46048166 G
1 G
46048167 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:46048477 original size:27 final size:26
Alignment explanation
Indices: 46048460--46048670 Score: 158
Period size: 27 Copynumber: 7.9 Consensus size: 26
46048450 TATAACAGTT
46048460 ATTTTATCCTATAGGGGTATTTCGGTC
1 ATTTTATCCTATAGGGGTATTTC-GTC
* *
46048487 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTATCCTATAGGGGTATTTCG-TC
*
46048514 ATTTTATCCTATA-GGGTATTTTGATC
1 ATTTTATCCTATAGGGGTATTTCG-TC
* *
46048540 ATTTTACCCTAT-GGGAGTATTTTGGTC
1 ATTTTATCCTATAGGG-GTA-TTTCGTC
* *
46048567 ATTTTACCCTAT-GAGGGTATTCCGATC
1 ATTTTATCCTATAG-GGGTATTTCG-TC
* * *
46048594 ATTTTACCCTATGGGGGTATTCCGGTC
1 ATTTTATCCTATAGGGGTATTTC-GTC
* * * * *
46048621 ATTCTACCCTATGGGGGTATTTTGGTT
1 ATTTTATCCTATAGGGGTA-TTTCGTC
* * *
46048648 ATTCTACCCTATAAGGGTATTTC
1 ATTTTATCCTATAGGGGTATTTC
46048671 AGTGCAGATA
Statistics
Matches: 159, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
26 32 0.20
27 117 0.74
28 10 0.06
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTTATCCTATAGGGGTATTTCGTC
Found at i:46048518 original size:54 final size:54
Alignment explanation
Indices: 46048460--46048670 Score: 246
Period size: 54 Copynumber: 3.9 Consensus size: 54
46048450 TATAACAGTT
* * *
46048460 ATTTTATCCTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC
* * * *
46048514 ATTTTATCCTATA-GGGTATTTTGATCATTTTACCCTATGGGAGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC
* *
46048567 ATTTTACCCTAT-GAGGGTATTCCGATCATTTTACCCTATGGGGGTATTCCGGTC
1 ATTTTACCCTATAG-GGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC
* * * * * * **
46048621 ATTCTACCCTATGGGGGTATTTTGGTTATTCTACCCTATAAGGGTATTTC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTC
46048671 AGTGCAGATA
Statistics
Matches: 134, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
53 46 0.34
54 87 0.65
55 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC
Found at i:46048544 original size:80 final size:80
Alignment explanation
Indices: 46048460--46048670 Score: 271
Period size: 80 Copynumber: 2.6 Consensus size: 80
46048450 TATAACAGTT
* * * *
46048460 ATTTTATCCTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTATCCTA
1 ATTTTACCCTAT-GGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTA
**
46048525 T-AGGGTATTTTGATC
65 TGAGGGTATTCCGATC
*
46048540 ATTTTACCCTATGGGAGTATTTTGGTCATTTTACCCTATGAGGGTATTCCGATCATTTTACCCTA
1 ATTTTACCCTATGGG-GTATTTTGGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTA
* *
46048605 TGGGGGTATTCCGGTC
65 TGAGGGTATTCCGATC
* * * *
46048621 ATTCTACCCTATGGGGGTATTTTGGTTATTCTACCCTATAAGGGTATTTC
1 ATTTTACCCTAT-GGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTC
46048671 AGTGCAGATA
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
79 3 0.03
80 57 0.50
81 51 0.45
82 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (80 bp):
ATTTTACCCTATGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTAT
GAGGGTATTCCGATC
Found at i:46053551 original size:9 final size:9
Alignment explanation
Indices: 46053533--46053586 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
46053523 TTTGGTTAAA
46053533 AATTAACCG
1 AATTAACCG
*
46053542 AATTACCCG
1 AATTAACCG
*
46053551 AATT-ACTTG
1 AATTAAC-CG
*
46053560 AATTAATCG
1 AATTAACCG
46053569 AATTAACCG
1 AATTAACCG
46053578 AATTGAACC
1 AATT-AACC
46053587 ACTACATAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
8 1 0.03
9 30 0.83
10 5 0.14
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:46055828 original size:89 final size:89
Alignment explanation
Indices: 46055718--46055896 Score: 331
Period size: 89 Copynumber: 2.0 Consensus size: 89
46055708 TTCAACTCCA
* * *
46055718 TTTCTAGGTAAAACTAGTTGTCCTTGACTAGTGTCAACAACATTAGTAGGATTTTTCTTATATGA
1 TTTCTAGGTAAAACTAGTTGTCCTTCACTAGTGTCAACAACATTACTAGGATTTTTCTTACATGA
46055783 ACCAATATGATATTTCAATAACCC
66 ACCAATATGATATTTCAATAACCC
46055807 TTTCTAGGTAAAACTAGTTGTCCTTCACTAGTGTCAACAACATTACTAGGATTTTTCTTACATGA
1 TTTCTAGGTAAAACTAGTTGTCCTTCACTAGTGTCAACAACATTACTAGGATTTTTCTTACATGA
46055872 ACCAATATGATATTTCAATAACCC
66 ACCAATATGATATTTCAATAACCC
46055896 T
1 T
46055897 GTACCATTTT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (89 bp):
TTTCTAGGTAAAACTAGTTGTCCTTCACTAGTGTCAACAACATTACTAGGATTTTTCTTACATGA
ACCAATATGATATTTCAATAACCC
Found at i:46056670 original size:113 final size:113
Alignment explanation
Indices: 46056462--46056725 Score: 365
Period size: 113 Copynumber: 2.4 Consensus size: 113
46056452 TTACTGTGAG
* * * * *
46056462 ACACTGAAGCAAC-ACTTTAATTTAATTTAGGACAGCAT-AATAATACACAATTTGAAACATTAA
1 ACACTAAAACAACAACTTTAATTCAATTTATGACAGCATGAATAATACACAATTTGAAACATAAA
*
46056525 ACAACAGCTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAT
66 ACAACAGCTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
* * *
46056573 ACACTAAAAC-ACAAACTTTAATTCAATTTATGATAGCATGAA-AATGCTCAATTTGAAACACTA
1 ACACTAAAACAAC-AACTTTAATTCAATTTATGACAGCATGAATAATACACAATTTGAAACA-TA
* *
46056636 AAACAACAGCTTGATTTAATTTAAGACAGTATGAAAATGCTCAATTTGAA
64 AAACAACAGCTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
* *
46056686 ACACTCAAACAACAGCTTTAATTCAATTTATGACAGCATG
1 ACACTAAAACAACAACTTTAATTCAATTTATGACAGCATG
46056726 CAAACAGTAA
Statistics
Matches: 134, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
110 2 0.01
111 8 0.06
112 38 0.28
113 84 0.63
114 2 0.01
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (113 bp):
ACACTAAAACAACAACTTTAATTCAATTTATGACAGCATGAATAATACACAATTTGAAACATAAA
ACAACAGCTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
Found at i:46056683 original size:56 final size:57
Alignment explanation
Indices: 46056462--46056725 Score: 324
Period size: 57 Copynumber: 4.7 Consensus size: 57
46056452 TTACTGTGAG
* * * * *
46056462 ACACTGAAGCAACA-CTTTAATTTAATTTAGGACAGCAT-AATAATACACAATTTGAA
1 ACACTAAAACAACAGCTTTAATTTAATTTAAGACAGCATGAA-AATGCTCAATTTGAA
* *
46056518 ACA-TTAAACAACAGC-TTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAT
1 ACACTAAAACAACAGCTTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
* * * *
46056573 ACACTAAAAC-ACAAACTTTAATTCAATTTATGATAGCATGAAAATGCTCAATTTGAA
1 ACACTAAAACAAC-AGCTTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
* *
46056630 ACACTAAAACAACAGC-TTGATTTAATTTAAGACAGTATGAAAATGCTCAATTTGAA
1 ACACTAAAACAACAGCTTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
* * *
46056686 ACACTCAAACAACAGCTTTAATTCAATTTATGACAGCATG
1 ACACTAAAACAACAGCTTTAATTTAATTTAAGACAGCATG
46056726 CAAACAGTAA
Statistics
Matches: 178, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
55 46 0.26
56 63 0.35
57 67 0.38
58 2 0.01
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (57 bp):
ACACTAAAACAACAGCTTTAATTTAATTTAAGACAGCATGAAAATGCTCAATTTGAA
Found at i:46059079 original size:2 final size:2
Alignment explanation
Indices: 46059072--46059104 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
46059062 TTTACGCAGT
46059072 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
46059105 TTCTGTGTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:46063493 original size:39 final size:39
Alignment explanation
Indices: 46063450--46063528 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
46063440 GACAAAAAAG
46063450 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
1 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
*
46063489 TAGTGGAGTGAAGTCAGGGCCTCAGGGGCACTCTTCAGT
1 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
46063528 T
1 T
46063529 CTTTTTAAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (39 bp):
TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
Found at i:46063812 original size:43 final size:43
Alignment explanation
Indices: 46063765--46063855 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
46063755 TGAAGAAATC
* *
46063765 TTATCAAAACTAAGTATTTAAAAATTAAAAATTGAAATAAAAA
1 TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAGAAAAA
* * *
46063808 TTATCAAAATTCACTATTTAAAAATTAAAAATTTAAAGAAAAA
1 TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAGAAAAA
46063851 TTATC
1 TTATC
46063856 TAATTTACAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (43 bp):
TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAGAAAAA
Found at i:46063841 original size:15 final size:15
Alignment explanation
Indices: 46063780--46063844 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
46063770 AAAACTAAGT
46063780 ATTTAAAAATTAAAA
1 ATTTAAAAATTAAAA
*
46063795 A-TT-GAAA-TAAAA
1 ATTTAAAAATTAAAA
* * **
46063807 ATTATCAAAATTCACT
1 ATT-TAAAAATTAAAA
46063823 ATTTAAAAATTAAAA
1 ATTTAAAAATTAAAA
46063838 ATTTAAA
1 ATTTAAA
46063845 GAAAAATTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
12 6 0.16
13 4 0.11
14 3 0.08
15 19 0.51
16 5 0.14
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (15 bp):
ATTTAAAAATTAAAA
Found at i:46064799 original size:11 final size:11
Alignment explanation
Indices: 46064783--46064815 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
46064773 GGCTGATTTA
46064783 ATTCTTCTAAG
1 ATTCTTCTAAG
46064794 ATTCTTCTAAG
1 ATTCTTCTAAG
46064805 ATTCTTCTAAG
1 ATTCTTCTAAG
46064816 CCATTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (11 bp):
ATTCTTCTAAG
Found at i:46065033 original size:6 final size:7
Alignment explanation
Indices: 46065011--46065042 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
46065001 TGCTTCGGGG
46065011 TTTATTTT
1 TTTA-TTT
46065019 TTTATTT
1 TTTATTT
46065026 TTTATTT
1 TTTATTT
46065033 TTTATTT
1 TTTATTT
46065040 TTT
1 TTT
46065043 GCAATGAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTATTT
Found at i:46072975 original size:24 final size:24
Alignment explanation
Indices: 46072934--46073044 Score: 141
Period size: 24 Copynumber: 4.6 Consensus size: 24
46072924 TTGATATAAT
* * *
46072934 AACCATTCCCTTGGTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
46072958 AACCTTTTCATTGTTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
46072982 AACCTTTCCATTGTTATCCTTTTT
1 AACCTTTCCATTGTTATCCTTTTC
* * *
46073006 ATCATTTCCATTATTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
46073030 AACCTTTTCATTGTT
1 AACCTTTCCATTGTT
46073045 TCGGGGATAC
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.18, C:0.26, G:0.05, T:0.51
Consensus pattern (24 bp):
AACCTTTCCATTGTTATCCTTTTC
Found at i:46077958 original size:27 final size:27
Alignment explanation
Indices: 46077896--46077964 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
46077886 CTTTTACATT
* * * *
46077896 CTGGTAAACTTCCCTGTGTTTACTATC
1 CTGGTGAACTACCCCGTGTCTACTATC
* **
46077923 TTGACGAACTACCCCGTGTCTACTATC
1 CTGGTGAACTACCCCGTGTCTACTATC
*
46077950 CTGGTGAACTGCCCC
1 CTGGTGAACTACCCC
46077965 ATGTTTATTA
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (27 bp):
CTGGTGAACTACCCCGTGTCTACTATC
Found at i:46082416 original size:27 final size:27
Alignment explanation
Indices: 46082378--46082443 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
46082368 TTTTACCCCA
* *
46082378 TGTTTAATGTCCTAGC-GGACATTCTTG
1 TGTTTACTGTCCTAGCGGGACA-CCTTG
*
46082405 TGTTTACTGTCCTAGCGGGCCACCTTG
1 TGTTTACTGTCCTAGCGGGACACCTTG
46082432 TGTTTACTGTCC
1 TGTTTACTGTCC
46082444 CAACAGACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.39
Consensus pattern (27 bp):
TGTTTACTGTCCTAGCGGGACACCTTG
Found at i:46083766 original size:17 final size:19
Alignment explanation
Indices: 46083730--46083766 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
46083720 AGCAGTCTTC
46083730 AGGAAAACTTGTCTTTCCT
1 AGGAAAACTTGTCTTTCCT
*
46083749 AGGATAACTT-TC-TTCCT
1 AGGAAAACTTGTCTTTCCT
46083766 A
1 A
46083767 ATTCAGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (19 bp):
AGGAAAACTTGTCTTTCCT
Found at i:46085881 original size:26 final size:26
Alignment explanation
Indices: 46085812--46085886 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
46085802 TTCTATCCCT
* *
46085812 ATTTTACCCCTAACAAAAAATTTGACA
1 ATTTTACCCCTAA-TAAAATTTTGACA
* * *
46085839 ATTTTACCCATAGTAAAATTTTGACG
1 ATTTTACCCCTAATAAAATTTTGACA
* *
46085865 ATTTTGCCCCTAATAAATTTTT
1 ATTTTACCCCTAATAAAATTTT
46085887 TAGGAAAAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 28 0.72
27 11 0.28
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.39
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACA
Found at i:46088784 original size:41 final size:41
Alignment explanation
Indices: 46088738--46088838 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 41
46088728 TTGGGCTCTG
* **
46088738 TGCCTAGCAGGCTTTATTCCAGTGAATTATAGCAAGCTTTA
1 TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAAGCTTTA
* * * * *
46088779 TGCCTAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTA
1 TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAAGCTTTA
*
46088820 TGCCTAGAAGGCTTTATGC
1 TGCCTAGCAGGCTTTATGC
46088839 TGGTGTATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAAGCTTTA
Found at i:46097140 original size:31 final size:31
Alignment explanation
Indices: 46097078--46097140 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
46097068 TACTTTTCTT
* *
46097078 AAAAATCAAAACTTTATTTTGAAATAGTTAA
1 AAAAATCAAAACTTCATTTTGAAAAAGTTAA
* *
46097109 AAAAATCCAAAACTTCGTTTT-AAAAATTTAA
1 AAAAAT-CAAAACTTCATTTTGAAAAAGTTAA
46097140 A
1 A
46097141 CTTTTCTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.33
Consensus pattern (31 bp):
AAAAATCAAAACTTCATTTTGAAAAAGTTAA
Found at i:46097330 original size:23 final size:21
Alignment explanation
Indices: 46097304--46097358 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
46097294 TTACAATGAG
*
46097304 TAAAAAAATATATTTTTATTTTT
1 TAAAAAAA-A-ATTTCTATTTTT
*
46097327 TAAAATTTAAAATTTCTATTTTT
1 TAAAA--AAAAATTTCTATTTTT
46097350 TAAAAAAAA
1 TAAAAAAAA
46097359 TCAAAACTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
21 3 0.11
23 21 0.78
24 1 0.04
25 2 0.07
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAAAAAAAATTTCTATTTTT
Found at i:46097355 original size:146 final size:146
Alignment explanation
Indices: 46097054--46097358 Score: 391
Period size: 146 Copynumber: 2.1 Consensus size: 146
46097044 TCAAAGTTTT
* * *
46097054 CTTTTAAAAAAAATTACTTTTCTTAAAAATCAAAACTTTATTTTGAAATAGTTAAAAAAATCCAA
1 CTTTTAAAAAAAACTACTTTTCTTAAAAATCAAAACTTTACTTTGAAATAGTTAAAAAAATCAAA
* *
46097119 AACTTCGTTTTAAAAATTTAAACTTTTCTCTAAAATGACTAAAAAAAACATATTTTTATTTTTCA
66 AACTTCATTTTAAAAATTTAAACTTTCCTCTAAAATGACTAAAAAAAACATATTTTTATTTTTCA
*
46097184 AAATCTAAACTTTCTC
131 AAATCTAAAATTTCTC
* * * * *
46097200 C-TTTAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTGAAAAAATCA
1 CTTTTAAAAAAA-ACTACTTTTCTTAAAAATCAAAAC-TTTACTTTGAAATAGTTAAAAAAATCA
* * * *
46097264 AAAACTT-ATTTTAAAAATTTAAACTTTCCTTTACAATGAGT-AAAAAAATATATTTTTATTTTT
64 AAAACTTCATTTTAAAAATTTAAACTTTCCTCTAAAATGACTAAAAAAAACATATTTTTATTTTT
* * *
46097327 TAAAATTTAAAATTTCTAT
129 CAAAATCTAAAATTTCT-C
*
46097346 TTTTTAAAAAAAA
1 CTTTTAAAAAAAA
46097359 TCAAAACTTT
Statistics
Matches: 136, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
145 45 0.33
146 50 0.37
147 41 0.30
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (146 bp):
CTTTTAAAAAAAACTACTTTTCTTAAAAATCAAAACTTTACTTTGAAATAGTTAAAAAAATCAAA
AACTTCATTTTAAAAATTTAAACTTTCCTCTAAAATGACTAAAAAAAACATATTTTTATTTTTCA
AAATCTAAAATTTCTC
Found at i:46099685 original size:37 final size:37
Alignment explanation
Indices: 46099635--46099713 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46099625 TTATTACGAA
* * *
46099635 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46099672 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46099709 GTCTT
1 GTCTT
46099714 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46099978 original size:49 final size:49
Alignment explanation
Indices: 46099832--46099980 Score: 212
Period size: 49 Copynumber: 3.1 Consensus size: 49
46099822 CCCTTTGGGA
* * * * *
46099832 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46099879 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46099928 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46099977 CTTA
1 CTTA
46099981 CTATCATTTC
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 8 0.09
48 1 0.01
49 80 0.90
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46110274 original size:90 final size:90
Alignment explanation
Indices: 46110121--46110296 Score: 334
Period size: 90 Copynumber: 2.0 Consensus size: 90
46110111 ATGACGACGA
*
46110121 GTTTAGGAAAATCCCTATTGTTGAAAACACCGTTACCTAAAAGAGATGCCTTTGTGGTTGAATAT
1 GTTTAGGAAAATCCCTATTGTTGAAAACACCATTACCTAAAAGAGATGCCTTTGTGGTTGAATAT
46110186 GTTATATGTGAGTCTTTGTGGCGTC
66 GTTATATGTGAGTCTTTGTGGCGTC
*
46110211 GTTTAGGAAAATCCCTATTGTTGAAAACACCATTACCTAAAAGTGATGCCTTTGTGGTTGAATAT
1 GTTTAGGAAAATCCCTATTGTTGAAAACACCATTACCTAAAAGAGATGCCTTTGTGGTTGAATAT
46110276 GTTATATGTGAGTCTTTGTGG
66 GTTATATGTGAGTCTTTGTGG
46110297 TTGAATATGT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (90 bp):
GTTTAGGAAAATCCCTATTGTTGAAAACACCATTACCTAAAAGAGATGCCTTTGTGGTTGAATAT
GTTATATGTGAGTCTTTGTGGCGTC
Found at i:46110302 original size:29 final size:29
Alignment explanation
Indices: 46110258--46110325 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
46110248 TAAAAGTGAT
*
46110258 GCCTTTGTGGTTGAATATGTTATATGTGA
1 GCCTTTGTGGTTGAATATGTTATATGTAA
*
46110287 GTCTTTGTGGTTGAATATGTTATATGTAA
1 GCCTTTGTGGTTGAATATGTTATATGTAA
46110316 GCCTTTGTGG
1 GCCTTTGTGG
46110326 CTATACTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.19, C:0.07, G:0.28, T:0.46
Consensus pattern (29 bp):
GCCTTTGTGGTTGAATATGTTATATGTAA
Found at i:46110404 original size:61 final size:60
Alignment explanation
Indices: 46110273--46110465 Score: 199
Period size: 61 Copynumber: 3.2 Consensus size: 60
46110263 TGTGGTTGAA
* * * * * * * *
46110273 TATGTTATATGTGAGTCTTTGTGGTTGAATATGTTATA-TGTAAGCCTTTGTGGCTATAC
1 TATGTTACATGTGAGCCTTAGTGGTGGAAAATGTTATATTGGAAGCCTTTGTGGCTGTTC
* * * * * *
46110332 TTTGTTACATGTGAGGCTTAGTGGTGGAACATATTATATTTGGAAGCCTTTTTGGTTGTTC
1 TATGTTACATGTGAGCCTTAGTGGTGGAAAATGTTATA-TTGGAAGCCTTTGTGGCTGTTC
* *
46110393 TATGTTACATGTGAGCCTTAGTGGTGGAAAATGTTATGTATGGAAGCCCTTGTGGCTGTTC
1 TATGTTACATGTGAGCCTTAGTGGTGGAAAATGTTATAT-TGGAAGCCTTTGTGGCTGTTC
* *
46110454 TCTATTACATGT
1 TATGTTACATGT
46110466 AAGTATTTGT
Statistics
Matches: 109, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
59 31 0.28
60 1 0.01
61 77 0.71
ACGTcount: A:0.21, C:0.11, G:0.25, T:0.42
Consensus pattern (60 bp):
TATGTTACATGTGAGCCTTAGTGGTGGAAAATGTTATATTGGAAGCCTTTGTGGCTGTTC
Found at i:46116359 original size:14 final size:14
Alignment explanation
Indices: 46116340--46116369 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46116330 TTACCAACTT
*
46116340 AACATAAACTTCAA
1 AACATAAACATCAA
46116354 AACATAAACATCAA
1 AACATAAACATCAA
46116368 AA
1 AA
46116370 GCACAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17
Consensus pattern (14 bp):
AACATAAACATCAA
Found at i:46117877 original size:50 final size:50
Alignment explanation
Indices: 46117760--46118056 Score: 319
Period size: 50 Copynumber: 5.8 Consensus size: 50
46117750 GATAATAACA
* * ** * *
46117760 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
46117809 TGTCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** *
46117859 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
46117909 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
46117959 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC--GG
*
46118014 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
46118057 TTACCCAAAT
Statistics
Matches: 210, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.00
49 38 0.18
50 128 0.61
53 2 0.01
55 2 0.01
56 39 0.19
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:46119391 original size:20 final size:20
Alignment explanation
Indices: 46119357--46119538 Score: 97
Period size: 20 Copynumber: 9.1 Consensus size: 20
46119347 AGAGTATAAA
46119357 CAGGGGCAC-GTAAGTGCAAT
1 CAGGGGCACTG-AAGTGCAAT
** * *
46119377 CAGGGATACTGAAGTACAAA
1 CAGGGGCACTGAAGTGCAAT
* *
46119397 CAGTGGCACAT-ATGTGCAAT
1 CAGGGGCAC-TGAAGTGCAAT
* * *
46119417 CAGGGGCACCGAAGTACAAA
1 CAGGGGCACTGAAGTGCAAT
*
46119437 CAGGGGCAC-GTATGTGCAAT
1 CAGGGGCACTG-AAGTGCAAT
* * *
46119457 CAGGGGTACTGAAGTACAAA
1 CAGGGGCACTGAAGTGCAAT
* *
46119477 CAGAGGTA-TGTAAGTGCAAT
1 CAGGGGCACTG-AAGTGCAAT
* ** *
46119497 CAGGGGTACCAAAGTACTAAT
1 CAGGGGCACTGAAGTGC-AAT
46119518 -AGGGGCAC-GCAAGTGCAAT
1 CAGGGGCACTG-AAGTGCAAT
46119537 CA
1 CA
46119539 TACAATAATT
Statistics
Matches: 120, Mismatches: 32, Indels: 20
0.70 0.19 0.12
Matches are distributed among these distances:
19 6 0.05
20 108 0.90
21 6 0.05
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.16
Consensus pattern (20 bp):
CAGGGGCACTGAAGTGCAAT
Found at i:46119414 original size:40 final size:40
Alignment explanation
Indices: 46119349--46119538 Score: 227
Period size: 40 Copynumber: 4.8 Consensus size: 40
46119339 GAGTTACTAG
* * *
46119349 AGTATAAACAGGGGCACGTAAGTGCAATCAGGGATACTGA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
* * * *
46119389 AGTACAAACAGTGGCACATATGTGCAATCAGGGGCACCGA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
46119429 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
* * * * **
46119469 AGTACAAACAGAGGTATGTAAGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
* * * *
46119509 AGTACTAATAGGGGCACGCAAGTGCAATCA
1 AGTACAAACAGGGGCACGTATGTGCAATCA
46119539 TACAATAATT
Statistics
Matches: 127, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
Found at i:46119494 original size:80 final size:80
Alignment explanation
Indices: 46119349--46119538 Score: 263
Period size: 80 Copynumber: 2.4 Consensus size: 80
46119339 GAGTTACTAG
* * *
46119349 AGTATAAACAGGGGCACGTAAGTGCAATCAGGGATACTGAAGTACAAACAGTGGCACATATGTGC
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGATACTGAAGTACAAACAGAGGCACATAAGTGC
*
46119414 AATCAGGGGCACCGA
66 AATCAGGGGCACCAA
* * * **
46119429 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAGAGGTATGTAAGTGC
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGATACTGAAGTACAAACAGAGGCACATAAGTGC
*
46119494 AATCAGGGGTACCAA
66 AATCAGGGGCACCAA
* * *
46119509 AGTACTAATAGGGGCACGCAAGTGCAATCA
1 AGTACAAACAGGGGCACGTAAGTGCAATCA
46119539 TACAATAATT
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 96 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (80 bp):
AGTACAAACAGGGGCACGTAAGTGCAATCAGGGATACTGAAGTACAAACAGAGGCACATAAGTGC
AATCAGGGGCACCAA
Found at i:46121855 original size:24 final size:24
Alignment explanation
Indices: 46121828--46121875 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
46121818 CCAAGTGATA
*
46121828 GGGGCGTATCCCAGGCCGTGTGCT
1 GGGGCGTATCCCAAGCCGTGTGCT
*
46121852 GGGGCGTGTCCCAAGCCGTGTGCT
1 GGGGCGTATCCCAAGCCGTGTGCT
46121876 AGGCCGTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.29, G:0.42, T:0.21
Consensus pattern (24 bp):
GGGGCGTATCCCAAGCCGTGTGCT
Found at i:46121861 original size:96 final size:96
Alignment explanation
Indices: 46121656--46121851 Score: 239
Period size: 96 Copynumber: 2.0 Consensus size: 96
46121646 GTAGGTCGTA
* * * * * * * * *
46121656 TGCTAGGCTATGTAAAACGCTGACTTAATACCTATGGCCGTGTCTCAGACCATGTGTGTCACATA
1 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTGCGGCACACA
* *
46121721 GCCAAGTGACACTGGCATGTCCCAAGCCGTG
66 GCCAAGTGACACGGGCATATCCCAAGCCGTG
* *
46121752 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGTCGTGTCTCAGACCATGTGCGGCACACG
1 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTGCGGCACACA
* * * *
46121817 GCCAAGTGATAGGGGCGTATCCCAGGCCGTG
66 GCCAAGTGACACGGGCATATCCCAAGCCGTG
46121848 TGCT
1 TGCT
46121852 GGGGCGTGTC
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (96 bp):
TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTGCGGCACACA
GCCAAGTGACACGGGCATATCCCAAGCCGTG
Found at i:46121883 original size:24 final size:24
Alignment explanation
Indices: 46121836--46121884 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
46121826 TAGGGGCGTA
* * *
46121836 TCCCAGGCCGTGTGCTGGGGCGTG
1 TCCCAAGCCGTGTGCTAGGCCGTG
46121860 TCCCAAGCCGTGTGCTAGGCCGTG
1 TCCCAAGCCGTGTGCTAGGCCGTG
46121884 T
1 T
46121885 ACCATACTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.08, C:0.31, G:0.39, T:0.22
Consensus pattern (24 bp):
TCCCAAGCCGTGTGCTAGGCCGTG
Found at i:46121953 original size:120 final size:119
Alignment explanation
Indices: 46121738--46121964 Score: 330
Period size: 120 Copynumber: 1.9 Consensus size: 119
46121728 GACACTGGCA
* * *
46121738 TGTCCCAAGCCGTGTGCTAGGCTGTGTCATACACTGACTTAATACCCACGGTCGTGTCTCAGACC
1 TGTCCCAAGCCGTGTGCTAGGCCGTGTCATA-ACTGACTTAATACCCACGGCCATGTCTCAGACC
* * *
46121803 ATGTGCGGCACACGGCCAAGTGATAGGGGCGTATCCCAGGCCGTGTGCTGGGGCG
65 ATGTGCAGCACACGGCCAAGTGACACGGGCGTATCCCAGGCCGTGTGCTGGGGCG
* *
46121858 TGTCCCAAGCCGTGTGCTAGGCCGTGTACCAT-ACTGATTTAATACCCACTGCCATGTCTCAGAC
1 TGTCCCAAGCCGTGTGCTAGGCCGTGT--CATAACTGACTTAATACCCACGGCCATGTCTCAGAC
* *
46121922 CATGTGCAGTACACGGCCAAGTGACACGGGCGTGTCCCAGGCC
64 CATGTGCAGCACACGGCCAAGTGACACGGGCGTATCCCAGGCC
46121965 ATGTCCACCT
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
120 92 0.97
122 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.22
Consensus pattern (119 bp):
TGTCCCAAGCCGTGTGCTAGGCCGTGTCATAACTGACTTAATACCCACGGCCATGTCTCAGACCA
TGTGCAGCACACGGCCAAGTGACACGGGCGTATCCCAGGCCGTGTGCTGGGGCG
Found at i:46122913 original size:36 final size:37
Alignment explanation
Indices: 46122837--46122989 Score: 209
Period size: 37 Copynumber: 4.2 Consensus size: 37
46122827 ACAAAACAAT
* * * *
46122837 CCAAACGCTCGTAAGAGCTAATTCATCCGATAACACG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
* * * *
46122874 CCAAATGTTCATAAGAGCGAATCCA-CCAATAACATG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
*
46122910 CCAAATGCTCATAAGAGTTAATCCACCCGATAACACG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
*
46122947 CCAAATGCTCATAAGAGCTAATCCACCCGATAACATG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
46122984 CCAAAT
1 CCAAAT
46122990 CAAGGAGGAT
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
36 31 0.31
37 70 0.69
ACGTcount: A:0.39, C:0.29, G:0.14, T:0.19
Consensus pattern (37 bp):
CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
Found at i:46122943 original size:73 final size:73
Alignment explanation
Indices: 46122821--46122989 Score: 225
Period size: 73 Copynumber: 2.3 Consensus size: 73
46122811 GTACACAAGT
* * * * * *
46122821 AATCCAACAA-AACAAT-CCAAACGCTCGTAAGAGCTAATTCATCCGATAACACGCCAAATGTTC
1 AATCCACCAATAAC-ATGCCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTC
46122884 ATAAGAGCG
65 ATAAGAGCG
*
46122893 AATCCACCAATAACATGCCAAATGCTCATAAGAGTTAATCCACCCGATAACACGCCAAATGCTCA
1 AATCCACCAATAACATGCCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCA
*
46122958 TAAGAGCT
66 TAAGAGCG
*
46122966 AATCCACCCGATAACATGCCAAAT
1 AATCCA-CCAATAACATGCCAAAT
46122990 CAAGGAGGAT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 11 0.13
73 58 0.68
74 16 0.19
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.18
Consensus pattern (73 bp):
AATCCACCAATAACATGCCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCA
TAAGAGCG
Found at i:46125147 original size:4 final size:4
Alignment explanation
Indices: 46125138--46125163 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
46125128 GGAGATATTT
46125138 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
46125164 TTAGTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:46129812 original size:87 final size:87
Alignment explanation
Indices: 46129690--46130021 Score: 511
Period size: 87 Copynumber: 3.8 Consensus size: 87
46129680 GCTAGTACTT
* * * *
46129690 AGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGATGGTGGCAAGGCTTCATTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
46129755 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
*
46129777 ATGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
* * *
46129842 TGATCTGCTTTGCTGTTAACGT
66 CGATCTGCTTCGCTGTTAACGC
* * * * *
46129864 AGGAATGCAAGATCTACTATATTTAACTAGCTCCACTACAACGGATGGAGGCAAGGCTTCGTTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
*
46129929 CGATCTGCTTCACTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * *
46129951 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAATCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
46130016 CGATCT
66 CGATCT
46130022 TTACTGATCT
Statistics
Matches: 220, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 220 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (87 bp):
AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTT
CGATCTGCTTCGCTGTTAACGC
Found at i:46143666 original size:34 final size:34
Alignment explanation
Indices: 46143616--46143683 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
46143606 AATAATTTCG
46143616 TTACGGACTCTGTAATGTGAGAGAACAAGATGGT
1 TTACGGACTCTGTAATGTGAGAGAACAAGATGGT
* * * *
46143650 TTACTGACTCTTTAATGTGAGAGAATAAGCTGGT
1 TTACGGACTCTGTAATGTGAGAGAACAAGATGGT
46143684 CTTCAAATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (34 bp):
TTACGGACTCTGTAATGTGAGAGAACAAGATGGT
Found at i:46145291 original size:18 final size:18
Alignment explanation
Indices: 46145268--46145305 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
46145258 AGCATTTAAA
46145268 ACCTATTCCATGGAGAAG
1 ACCTATTCCATGGAGAAG
46145286 ACCTATTCCATGGAGAAG
1 ACCTATTCCATGGAGAAG
46145304 AC
1 AC
46145306 AAGAAGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (18 bp):
ACCTATTCCATGGAGAAG
Found at i:46153561 original size:27 final size:27
Alignment explanation
Indices: 46153523--46153700 Score: 275
Period size: 27 Copynumber: 6.6 Consensus size: 27
46153513 TAAATTGTAC
46153523 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46153550 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46153577 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46153604 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
46153631 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
46153659 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46153686 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46153701 GACTTAATAT
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
27 117 0.82
28 25 0.18
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:46161676 original size:27 final size:27
Alignment explanation
Indices: 46161590--46161762 Score: 248
Period size: 27 Copynumber: 6.6 Consensus size: 27
46161580 TAAATTGTAC
46161590 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
46161616 -GCACT-AGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
46161640 -GCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46161666 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
46161693 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
46161721 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46161748 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46161763 GACTTAATAT
Statistics
Matches: 136, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
24 24 0.18
25 13 0.10
26 11 0.08
27 63 0.46
28 25 0.18
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:46161731 original size:55 final size:52
Alignment explanation
Indices: 46161590--46161762 Score: 244
Period size: 55 Copynumber: 3.3 Consensus size: 52
46161580 TAAATTGTAC
46161590 AGCACTAAGTGTGCGATTGACTATGTGCACT-AGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGATTGACTATGTGCACTAAGTGTGCGAATTGACTATGT
46161640 -GCACTAAGTGTGCGAATTGACTATGTTGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCG-ATTGACTATG-TGCACTAAGTGTGCGAATTGACTATGT
* * *
46161693 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGA--TTGACTATGT-GCACTAAGTGTGCGAATTGACTATGT
*
46161748 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46161763 GACTTAATAT
Statistics
Matches: 111, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
49 14 0.13
50 10 0.09
51 6 0.05
52 8 0.07
53 12 0.11
54 15 0.14
55 46 0.41
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTGACTATGTGCACTAAGTGTGCGAATTGACTATGT
Found at i:46161736 original size:82 final size:76
Alignment explanation
Indices: 46161590--46161762 Score: 247
Period size: 82 Copynumber: 2.2 Consensus size: 76
46161580 TAAATTGTAC
46161590 AGCACTAAGTGTGCGATTGACTATGTGCACTAGTGTGCGATTGACTATGTGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGATTGACTATGTGCACTAGTGTGCGATTGACTATGTGCACTAAGTGTGCGA
*
46161655 ATTGACTATGT
66 ATTGACTATAT
* *
46161666 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCG-ATTGACTATGT-GCACT-AGTGTGCGA--TTGACTATGT-GCACTAAGT
*
46161731 GTGCGAGTTGACTATAT
60 GTGCGAATTGACTATAT
*
46161748 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46161763 GACTTAATAT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
76 14 0.16
77 11 0.13
78 5 0.06
79 9 0.11
81 9 0.11
82 37 0.44
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (76 bp):
AGCACTAAGTGTGCGATTGACTATGTGCACTAGTGTGCGATTGACTATGTGCACTAAGTGTGCGA
ATTGACTATAT
Found at i:46169667 original size:27 final size:27
Alignment explanation
Indices: 46169614--46169760 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
46169604 TTAATTGTAC
46169614 AGCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46169640 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46169667 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
46169694 AGCACTAAGTGTGCGAGTTTGATTA-GT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
46169721 AGCACTAAGTGTGCGAGTT-A-TATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46169746 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46169761 GACTAATATA
Statistics
Matches: 111, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
24 2 0.02
25 16 0.14
26 16 0.14
27 71 0.64
28 6 0.05
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:46177299 original size:27 final size:27
Alignment explanation
Indices: 46177268--46177437 Score: 187
Period size: 25 Copynumber: 6.6 Consensus size: 27
46177258 TAAATTGTAC
46177268 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46177295 TGCACTAAGTGTGCGA--TGACTATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46177319 ATGCACTAAGTGTGCGAATTG-C-ATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46177344 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46177372 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
46177399 AGCA-TAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46177424 AGCA-TGAGTGTGCG
1 AGCACTAAGTGTGCG
46177438 GACTAATATA
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
24 15 0.12
25 45 0.36
26 17 0.14
27 33 0.26
28 15 0.12
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46177323 original size:25 final size:25
Alignment explanation
Indices: 46177269--46177418 Score: 155
Period size: 27 Copynumber: 5.8 Consensus size: 25
46177259 AAATTGTACA
46177269 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGA-TTGACTATG-T
46177296 GCACTAAGTGTGCGA-TGACTATGAT
1 GCACTAAGTGTGCGATTGACTATG-T
*
46177321 GCACTAAGTGTGCGAATTG-C-ATGG
1 GCACTAAGTGTGCG-ATTGACTATGT
46177345 GCACTAAGTGTGCGAGTTTGACTATGT
1 GCACTAAGTGTGCGA--TTGACTATGT
* *
46177372 AGCACTAAGTGTGCGATTTGATTACGT
1 -GCACTAAGTGTGCGA-TTGACTATGT
46177399 AGCA-TAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGA-TTGA
46177419 TATATAGCAT
Statistics
Matches: 110, Mismatches: 6, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
23 1 0.01
24 14 0.13
25 29 0.26
26 18 0.16
27 33 0.30
28 15 0.14
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (25 bp):
GCACTAAGTGTGCGATTGACTATGT
Found at i:46177329 original size:52 final size:53
Alignment explanation
Indices: 46177268--46177437 Score: 185
Period size: 52 Copynumber: 3.3 Consensus size: 53
46177258 TAAATTGTAC
*
46177268 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-TGACTATG-
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTGACTATGT
* *
46177319 ATGCACTAAGTGTGCGAATTG-C-ATG-GGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA--TTGACTATGT
* * *
46177372 AGCACTAAGTGTGCGATTTGATTACGTAGCA-TAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGA-TTGACTATGT
*
46177424 AGCA-TGAGTGTGCG
1 AGCACTAAGTGTGCG
46177438 GACTAATATA
Statistics
Matches: 102, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
49 15 0.15
50 3 0.03
51 11 0.11
52 52 0.51
53 5 0.05
54 13 0.13
55 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTGACTATGT
Found at i:46177757 original size:22 final size:24
Alignment explanation
Indices: 46177732--46177782 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
46177722 TGTTAAATTG
46177732 TATTTCG-GTATGT-TGGTTAGGA
1 TATTTCGTGTATGTCTGGTTAGGA
* *
46177754 TATTTTTGTGTATGTCTTGTTAGGA
1 TA-TTTCGTGTATGTCTGGTTAGGA
46177779 TATT
1 TATT
46177783 GGTGAGAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
22 2 0.08
23 4 0.17
24 8 0.33
25 10 0.42
ACGTcount: A:0.18, C:0.04, G:0.25, T:0.53
Consensus pattern (24 bp):
TATTTCGTGTATGTCTGGTTAGGA
Found at i:46192705 original size:27 final size:28
Alignment explanation
Indices: 46192667--46192741 Score: 125
Period size: 27 Copynumber: 2.7 Consensus size: 28
46192657 NNNNNNNNNC
46192667 TATGTAGCACTAAGTGTGCGAGTTGA-T
1 TATGTAGCACTAAGTGTGCGAGTTGACT
46192694 TATGTAGCACTAAGTGTGCGAGTTGACT
1 TATGTAGCACTAAGTGTGCGAGTTGACT
* *
46192722 TATATAGCACTGAGTGTGCG
1 TATGTAGCACTAAGTGTGCG
46192742 GACTTAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
27 26 0.58
28 19 0.42
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
TATGTAGCACTAAGTGTGCGAGTTGACT
Found at i:46200178 original size:27 final size:27
Alignment explanation
Indices: 46200140--46200315 Score: 266
Period size: 27 Copynumber: 6.6 Consensus size: 27
46200130 TAAATTGTAC
46200140 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46200167 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46200194 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
46200221 -GCACTAAGTGTGCG-ATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
46200246 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
46200274 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
46200301 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46200316 GACTTAATAT
Statistics
Matches: 139, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
25 11 0.08
26 28 0.20
27 75 0.54
28 25 0.18
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:46200280 original size:80 final size:81
Alignment explanation
Indices: 46200140--46200315 Score: 266
Period size: 80 Copynumber: 2.2 Consensus size: 81
46200130 TAAATTGTAC
* *
46200140 AGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTG
*
46200205 TGCGAATTGACTATGT
66 TGCGAATTGACTATAT
* *
46200221 -GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGT
*
46200284 GTGCGAGTTGACTATAT
65 GTGCGAATTGACTATAT
*
46200301 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46200316 GACTTAATAT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 26 0.30
80 47 0.55
81 13 0.15
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTG
TGCGAATTGACTATAT
Found at i:46208229 original size:27 final size:27
Alignment explanation
Indices: 46208191--46208364 Score: 258
Period size: 27 Copynumber: 6.4 Consensus size: 27
46208181 GAGATTGGCG
* *
46208191 CTAAGTGTGCGAATTGATTATGTTGCA
1 CTAAGTGTGCGAATTGACTATGTAGCA
*
46208218 CTAAGTGTGCGAATTGACTATGTTGCA
1 CTAAGTGTGCGAATTGACTATGTAGCA
*
46208245 CTAAGTGTGCGAATTGACTATGTTGCA
1 CTAAGTGTGCGAATTGACTATGTAGCA
46208272 CTAAGTGTGCGAATTGACTATGTAGCA
1 CTAAGTGTGCGAATTGACTATGTAGCA
* *
46208299 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGA-ATTGACTATGTAGCA
* *
46208327 CTAAGTGTGCGAGTTGACTATATAGCA
1 CTAAGTGTGCGAATTGACTATGTAGCA
*
46208354 CTGAGTGTGCG
1 CTAAGTGTGCG
46208365 GACTTAATAT
Statistics
Matches: 138, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
27 113 0.82
28 25 0.18
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.33
Consensus pattern (27 bp):
CTAAGTGTGCGAATTGACTATGTAGCA
Found at i:46214652 original size:23 final size:24
Alignment explanation
Indices: 46214602--46214658 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
46214592 TGACGCTAAG
*
46214602 TGGTGTGTAGGGTTGGATGAGAGA
1 TGGTGTGTAGGGATGGATGAGAGA
46214626 TGGTGTGTAGGGAT-GATCG-GAGA
1 TGGTGTGTAGGGATGGAT-GAGAGA
46214649 TGGTGTGTAG
1 TGGTGTGTAG
46214659 TAGATAGGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.19, C:0.02, G:0.49, T:0.30
Consensus pattern (24 bp):
TGGTGTGTAGGGATGGATGAGAGA
Found at i:46216679 original size:26 final size:26
Alignment explanation
Indices: 46216648--46216715 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
46216638 CAATATTGCT
46216648 GCAAAGCTGCCAGTAATAATGACGCA
1 GCAAAGCTGCCAGTAATAATGACGCA
* *
46216674 GTAAAGCTGCCAGTAATAATGATGCA
1 GCAAAGCTGCCAGTAATAATGACGCA
46216700 GCAAAGCTGCCAGTAA
1 GCAAAGCTGCCAGTAA
46216716 CAGTAACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
GCAAAGCTGCCAGTAATAATGACGCA
Found at i:46216959 original size:27 final size:26
Alignment explanation
Indices: 46216925--46217063 Score: 88
Period size: 27 Copynumber: 5.2 Consensus size: 26
46216915 GTATAATGTT
46216925 ATTTTACCCTAAGGGGGTATTTCGGTC
1 ATTTTACCCTAA-GGGGTATTTCGGTC
* *
46216952 ATTTTACCTTTCAA-GGGTATTTTGGTC
1 ATTTTACC-CT-AAGGGGTATTTCGGTC
* ***
46216979 ATTTTACCC-ATCGAGGGTATTTTAATC
1 ATTTTACCCTA-AG-GGGTATTTCGGTC
* *
46217006 ATTTTACCC-ATCGAGGGTATTTCAGTC
1 ATTTTACCCTA-AG-GGGTATTTCGGTC
*
46217033 ATTTTATCCATCAA-GGGTATTTCGGTC
1 ATTTTA-CCCT-AAGGGGTATTTCGGTC
46217060 ATTT
1 ATTT
46217064 GCCCACGAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
24 1 0.01
27 86 0.92
28 3 0.03
29 2 0.02
30 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTAAGGGGTATTTCGGTC
Found at i:46216997 original size:54 final size:54
Alignment explanation
Indices: 46216939--46217063 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
46216929 TACCCTAAGG
** ** *
46216939 GGGTATTTCGGTCATTTTACCTTTCAAGGGTATTTTGGTCATTTTACCCATCGA
1 GGGTATTTCGGTCATTTTACCCATCAAGGGTATTTCAGTCATTTTACCCATCAA
*** * *
46216993 GGGTATTTTAATCATTTTACCCATCGAGGGTATTTCAGTCATTTTATCCATCAA
1 GGGTATTTCGGTCATTTTACCCATCAAGGGTATTTCAGTCATTTTACCCATCAA
46217047 GGGTATTTCGGTCATTT
1 GGGTATTTCGGTCATTT
46217064 GCCCACGAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (54 bp):
GGGTATTTCGGTCATTTTACCCATCAAGGGTATTTCAGTCATTTTACCCATCAA
Found at i:46223611 original size:28 final size:28
Alignment explanation
Indices: 46223580--46223688 Score: 150
Period size: 28 Copynumber: 4.0 Consensus size: 28
46223570 ATACAACAAC
*
46223580 AGTGTGGACCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
46223608 A--GTGGGCTTTAGCCCAATATAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
46223634 AGTGTGGGCCTTAGCCCGATATAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
*
46223662 AGTGTGGGCCATAGCCCAATACAGTAA
1 AGTGTGGGCCTTAGCCCAATACAGTAA
46223689 CAGTATAATG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
26 23 0.32
28 48 0.68
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:46223662 original size:54 final size:55
Alignment explanation
Indices: 46223580--46223688 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 55
46223570 ATACAACAAC
** *
46223580 AGTGTGGACCTTAGCCCAATACAGTAATA-GTGGGCTTTAGCCCAATATAGTAAT
1 AGTGTGGACCTTAGCCCAATACAGTAATAGGTGGGCCATAGCCCAATACAGTAAT
* * *
46223634 AGTGTGGGCCTTAGCCCGATATAGTAATAGTGTGGGCCATAGCCCAATACAGTAA
1 AGTGTGGACCTTAGCCCAATACAGTAATAG-GTGGGCCATAGCCCAATACAGTAA
46223689 CAGTATAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 26 0.55
56 21 0.45
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (55 bp):
AGTGTGGACCTTAGCCCAATACAGTAATAGGTGGGCCATAGCCCAATACAGTAAT
Found at i:46223854 original size:14 final size:14
Alignment explanation
Indices: 46223835--46223907 Score: 68
Period size: 14 Copynumber: 5.6 Consensus size: 14
46223825 ACAGCAAAGC
46223835 TGCAGTAACAGTAA
1 TGCAGTAACAGTAA
*
46223849 TGCAGTAA-AG--C
1 TGCAGTAACAGTAA
46223860 TGCAGTAACAGTAA
1 TGCAGTAACAGTAA
*
46223874 TGCAGTAA-AG--C
1 TGCAGTAACAGTAA
*
46223885 TGCCAGTAACAGTAT
1 TG-CAGTAACAGTAA
46223900 TGCAGTAA
1 TGCAGTAA
46223908 AGCTACTAGT
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
11 10 0.21
12 8 0.17
13 6 0.12
14 22 0.46
15 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.22
Consensus pattern (14 bp):
TGCAGTAACAGTAA
Found at i:46223925 original size:26 final size:25
Alignment explanation
Indices: 46223830--46223924 Score: 154
Period size: 25 Copynumber: 3.7 Consensus size: 25
46223820 ATGACACAGC
46223830 AAAGCTGCAGTAACAGTAATGCAGT
1 AAAGCTGCAGTAACAGTAATGCAGT
46223855 AAAGCTGCAGTAACAGTAATGCAGT
1 AAAGCTGCAGTAACAGTAATGCAGT
*
46223880 AAAGCTGCCAGTAACAGTATTGCAGT
1 AAAGCTG-CAGTAACAGTAATGCAGT
*
46223906 AAAGCTACTAGTAACAGTA
1 AAAGCTGC-AGTAACAGTA
46223925 TATGTGGCAA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
25 33 0.50
26 33 0.50
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (25 bp):
AAAGCTGCAGTAACAGTAATGCAGT
Found at i:46224133 original size:27 final size:26
Alignment explanation
Indices: 46224101--46224269 Score: 162
Period size: 27 Copynumber: 6.3 Consensus size: 26
46224091 GGTATACCAG
46224101 TCATTTTACCTTAT-GAGGGTATTTCA
1 TCATTTTACC-TATCGAGGGTATTTCA
*
46224127 CTAATTTTACCCT-TCGAGGGTATTTCGA
1 -TCATTTTA-CCTATCGAGGGTATTTC-A
* * *
46224155 TCATTTTACCCATCGAGAGCATTTCAA
1 TCATTTTACCTATCGAGGGTATTTC-A
* *
46224182 TCATTTTACCCATCGAGGGTATTTCGG
1 TCATTTTACCTATCGAGGGTATTTC-A
** *
46224209 TCATTTTACCCGTTGAGGGTATTTCGA
1 TCATTTTACCTATCGAGGGTATTTC-A
*
46224236 TCATTTTACGTATCGAGGGTATTTCA
1 TCATTTTACCTATCGAGGGTATTTCA
46224262 GTCATTTT
1 -TCATTTT
46224270 CCCACGAATC
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
26 4 0.03
27 113 0.94
28 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41
Consensus pattern (26 bp):
TCATTTTACCTATCGAGGGTATTTCA
Found at i:46224215 original size:81 final size:80
Alignment explanation
Indices: 46224101--46224273 Score: 224
Period size: 81 Copynumber: 2.1 Consensus size: 80
46224091 GGTATACCAG
*
46224101 TCATTTTACCTTATGAGGGTATTTCACTAATTTTACCC-TTCGAGGGTATTTCGATCATTTTACC
1 TCATTTTACC-CATGAGGGTATTTCACTAATTTTACCCGTT-GAGGGTATTTCGATCATTTTACC
46224165 CATCGAGAGCATTTCAA
64 CATCGAGAGCATTTCAA
** * **
46224182 TCATTTTACCCATCGAGGGTATTTCGGTCATTTTACCCGTTGAGGGTATTTCGATCATTTTACGT
1 TCATTTTACCCAT-GAGGGTATTTCACTAATTTTACCCGTTGAGGGTATTTCGATCATTTTACCC
* * *
46224247 ATCGAGGGTATTTCAG
65 ATCGAGAGCATTTCAA
46224263 TCATTTT-CCCA
1 TCATTTTACCCA
46224274 CGAATCACAA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
80 6 0.07
81 73 0.90
82 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (80 bp):
TCATTTTACCCATGAGGGTATTTCACTAATTTTACCCGTTGAGGGTATTTCGATCATTTTACCCA
TCGAGAGCATTTCAA
Found at i:46224233 original size:54 final size:54
Alignment explanation
Indices: 46224100--46224273 Score: 208
Period size: 54 Copynumber: 3.2 Consensus size: 54
46224090 GGGTATACCA
* * * *
46224100 GTCATTTTA-CCTTATGAGGGTATTTCACTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCAT-TGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTCG
* * * *
46224154 ATCATTTTACCCATCGAGAGCATTTCAATCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATTGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTCG
* * ** *
46224208 GTCATTTTACCCGTTGAGGGTATTTCGATCATTTTACGTATCGAGGGTATTTCA
1 GTCATTTTACCCATTGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTCG
46224262 GTCATTTT-CCCA
1 GTCATTTTACCCA
46224274 CGAATCACAA
Statistics
Matches: 101, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 3 0.03
54 95 0.94
55 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCATTGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTCG
Found at i:46225652 original size:9 final size:9
Alignment explanation
Indices: 46225635--46225671 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
46225625 TGAGTTTTCG
46225635 AATTCGAAT
1 AATTCGAAT
*
46225644 AACTCGAAT
1 AATTCGAAT
*
46225653 AATTCAAAT
1 AATTCGAAT
46225662 AATTCGAAT
1 AATTCGAAT
46225671 A
1 A
46225672 TTAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:46242414 original size:26 final size:26
Alignment explanation
Indices: 46242294--46242416 Score: 84
Period size: 26 Copynumber: 5.0 Consensus size: 26
46242284 TTAAAAGTTA
* *
46242294 TTTGTGAACTTCCTGAT-TATGGCTC
1 TTTGTGAGCTTCCTGTTATATGGCTC
* *
46242319 -TTATGAGCTTCCTGTTATATAGC-C
1 TTTGTGAGCTTCCTGTTATATGGCTC
** * *
46242343 -CAGATAAGCTTCCCG--ATA-GGCTC
1 TTTG-TGAGCTTCCTGTTATATGGCTC
46242366 TTTGTGAGCTT-CTAGATTA-ATGGCTC
1 TTTGTGAGCTTCCT-G-TTATATGGCTC
46242392 TTTGTGAGCTTCCTGTTATATGGCT
1 TTTGTGAGCTTCCTGTTATATGGCT
46242417 TGAGAGAGGT
Statistics
Matches: 73, Mismatches: 14, Indels: 21
0.68 0.13 0.19
Matches are distributed among these distances:
22 3 0.04
23 11 0.15
24 15 0.21
25 18 0.25
26 24 0.33
27 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
TTTGTGAGCTTCCTGTTATATGGCTC
Found at i:46246502 original size:26 final size:25
Alignment explanation
Indices: 46246472--46246626 Score: 79
Period size: 26 Copynumber: 6.2 Consensus size: 25
46246462 TATTCGAAGC
46246472 TCCTGATTAAAGGCTCTTCATGAGCT
1 TCCTGATTAAAGGCTCTT-ATGAGCT
* * * * *
46246498 TCCTGATTAAAAGTTATTTGTGAACT
1 TCCTGATTAAAGGCT-CTTATGAGCT
*
46246524 TCCTGATT-ATGGCTCTTATGAGCT
1 TCCTGATTAAAGGCTCTTATGAGCT
* * ** *
46246548 TCTTG-TTATATA-GCCCGGATAAGCT
1 TCCTGATTA-A-AGGCTCTTATGAGCT
*
46246573 TCCTGA-T--AGGCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTC-TTATGAGCT
* * *
46246596 TCCCGATTAATGGCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTC-TTATGAGCT
46246622 TCCTG
1 TCCTG
46246627 TTATATGGCT
Statistics
Matches: 93, Mismatches: 26, Indels: 20
0.67 0.19 0.14
Matches are distributed among these distances:
21 1 0.01
22 3 0.03
23 12 0.13
24 12 0.13
25 18 0.19
26 45 0.48
27 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (25 bp):
TCCTGATTAAAGGCTCTTATGAGCT
Found at i:46246634 original size:26 final size:26
Alignment explanation
Indices: 46246514--46246636 Score: 91
Period size: 26 Copynumber: 5.0 Consensus size: 26
46246504 TTAAAAGTTA
* *
46246514 TTTGTGAACTTCCTGAT-TATGGCTC
1 TTTGTGAGCTTCCTGTTATATGGCTC
* * *
46246539 -TTATGAGCTTCTTGTTATATAGC-C
1 TTTGTGAGCTTCCTGTTATATGGCTC
** *
46246563 -CGGATAAGCTTCCTG--ATA-GGCTC
1 TTTG-TGAGCTTCCTGTTATATGGCTC
*
46246586 TTTGTGAGCTTCCCGATTA-ATGGCTC
1 TTTGTGAGCTTCCTG-TTATATGGCTC
46246612 TTTGTGAGCTTCCTGTTATATGGCT
1 TTTGTGAGCTTCCTGTTATATGGCT
46246637 TGGGAGAGGT
Statistics
Matches: 73, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
22 2 0.03
23 13 0.18
24 14 0.19
25 18 0.25
26 26 0.36
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (26 bp):
TTTGTGAGCTTCCTGTTATATGGCTC
Found at i:46248508 original size:28 final size:28
Alignment explanation
Indices: 46248476--46248529 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
46248466 CTCTATTGTC
*
46248476 CATTCTATATTTCTTTTAGTTTTATATT
1 CATTCTATATTTCTTTTAATTTTATATT
46248504 CATTCTATATTTCTTTTAATTTTATA
1 CATTCTATATTTCTTTTAATTTTATA
46248530 ACATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (28 bp):
CATTCTATATTTCTTTTAATTTTATATT
Found at i:46256164 original size:27 final size:27
Alignment explanation
Indices: 46256126--46256425 Score: 184
Period size: 27 Copynumber: 11.1 Consensus size: 27
46256116 AATATTTGTT
* *
46256126 AAATGACTAAATAACCCCCGAAAGGTA
1 AAATGACCAAATAACCCCCGAAGGGTA
* * *
46256153 AAGTGACCAAATAACCCCTGTAGGGTA
1 AAATGACCAAATAACCCCCGAAGGGTA
* * *
46256180 AAATGACCGAATTACCCCTGAAGGGTA
1 AAATGACCAAATAACCCCCGAAGGGTA
* *
46256207 AAATGACCGAATTACCCCCGAAGGGTA
1 AAATGACCAAATAACCCCCGAAGGGTA
* * * ** *
46256234 AAATGATCGAATTACCCTGGATGGGTA
1 AAATGACCAAATAACCCCCGAAGGGTA
* * *
46256261 AAATGATCGAAAT-ACCCCCGATGGTTA
1 AAATGA-CCAAATAACCCCCGAAGGGTA
* * *
46256288 AAATTACTAAA-ATA--CCCTAATGGGTA
1 AAATGACCAAATA-ACCCCCGAA-GGGTA
* * *
46256314 AAATGATCGAAAT-ACCCTCGATGGGTA
1 AAATGA-CCAAATAACCCCCGAAGGGTA
* * *
46256341 AAATGACTAAA-ATACCCTCGATGGGTA
1 AAATGACCAAATA-ACCCCCGAAGGGTA
* *
46256368 AAATTACCGAAAT-ACCCCCGATGGGTA
1 AAATGACC-AAATAACCCCCGAAGGGTA
* * *
46256395 AAATGATCGAAAT-ACCCTCGAGGGGTA
1 AAATGA-CCAAATAACCCCCGAAGGGTA
46256422 AAAT
1 AAAT
46256426 TATCGACATA
Statistics
Matches: 222, Mismatches: 38, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
25 4 0.02
26 18 0.08
27 190 0.86
28 10 0.05
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
AAATGACCAAATAACCCCCGAAGGGTA
Found at i:46256430 original size:27 final size:27
Alignment explanation
Indices: 46256175--46256521 Score: 312
Period size: 27 Copynumber: 12.9 Consensus size: 27
46256165 AACCCCTGTA
* * *
46256175 GGGTAAAATGACCGAATTACCC-CTGAA
1 GGGTAAAATGATCGAAATACCCTC-GAT
* * * *
46256202 GGGTAAAATGACCGAATTACCCCCGAA
1 GGGTAAAATGATCGAAATACCCTCGAT
* *
46256229 GGGTAAAATGATCGAATTACCCTGGAT
1 GGGTAAAATGATCGAAATACCCTCGAT
*
46256256 GGGTAAAATGATCGAAATACCCCCGAT
1 GGGTAAAATGATCGAAATACCCTCGAT
* * * *
46256283 GGTTAAAATTA-CTAAAATACCCT-AAT
1 GGGTAAAATGATC-GAAATACCCTCGAT
46256309 GGGTAAAATGATCGAAATACCCTCGAT
1 GGGTAAAATGATCGAAATACCCTCGAT
*
46256336 GGGTAAAATGA-CTAAAATACCCTCGAT
1 GGGTAAAATGATC-GAAATACCCTCGAT
* * *
46256363 GGGTAAAATTACCGAAATACCCCCGAT
1 GGGTAAAATGATCGAAATACCCTCGAT
*
46256390 GGGTAAAATGATCGAAATACCCTCGAG
1 GGGTAAAATGATCGAAATACCCTCGAT
* * *
46256417 GGGTAAAATTATCGACATACCCTCAAT
1 GGGTAAAATGATCGAAATACCCTCGAT
* * * *
46256444 AGGTAAAATGA-CTGTAATGCCCTTG-T
1 GGGTAAAATGATC-GAAATACCCTCGAT
* * *
46256470 AAGGTAAAATGATCGTAATACCC-CCAT
1 -GGGTAAAATGATCGAAATACCCTCGAT
*
46256497 AGGGTTAAATGATCGAAATATCCCT
1 -GGGTAAAATGATCGAAATA-CCCT
46256522 GTAAGGTAAA
Statistics
Matches: 267, Mismatches: 41, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
26 24 0.09
27 237 0.89
28 6 0.02
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
GGGTAAAATGATCGAAATACCCTCGAT
Found at i:46256557 original size:81 final size:81
Alignment explanation
Indices: 46256228--46256558 Score: 248
Period size: 81 Copynumber: 4.1 Consensus size: 81
46256218 TTACCCCCGA
* ** * * *
46256228 AGGGTAAAATGATCGAATTACCCTGGATGGGTAAAATGATCGAAATACCCCCGAT-GGTTAAAAT
1 AGGGTAAAATGATCGAAATACCCTCCAAGGGTAAAATGATCGAAATACCCTCAATAGG-TAAAAT
* ** *
46256292 TACTAAAAT-ACCCTA-
65 GACTGTAATGCCCCTAT
* * * * *
46256307 ATGGGTAAAATGATCGAAATACCCTCGATGGGTAAAATGA-CTAAAATACCCTCGATGGGTAAAA
1 A-GGGTAAAATGATCGAAATACCCTCCAAGGGTAAAATGATC-GAAATACCCTCAATAGGTAAAA
* * * * *
46256371 TTACCGAAATACCCCCGAT
64 TGACTGTAAT-GCCCCTAT
* * * *
46256390 -GGGTAAAATGATCGAAATACCCTCGAGGGGTAAAATTATCGACATACCCTCAATAGGTAAAATG
1 AGGGTAAAATGATCGAAATACCCTCCAAGGGTAAAATGATCGAAATACCCTCAATAGGTAAAATG
* *
46256454 ACTGTAATGCCCTTGT
66 ACTGTAATGCCCCTAT
* * * **
46256470 AAGGTAAAATGATCGTAATACCC-CCATAGGGTTAAATGATCGAAATATCCCTGTA-AGGTAAAA
1 AGGGTAAAATGATCGAAATACCCTCCA-AGGGTAAAATGATCGAAATA-CCCTCAATAGGTAAAA
46256533 TGA-TAAG-AATGCCCCTAT
64 TGACT--GTAATGCCCCTAT
46256551 AGGGTAAA
1 AGGGTAAA
46256559 TGACTATTTT
Statistics
Matches: 207, Mismatches: 33, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
79 2 0.01
80 68 0.33
81 126 0.61
82 11 0.05
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (81 bp):
AGGGTAAAATGATCGAAATACCCTCCAAGGGTAAAATGATCGAAATACCCTCAATAGGTAAAATG
ACTGTAATGCCCCTAT
Found at i:46256611 original size:24 final size:24
Alignment explanation
Indices: 46256579--46256644 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
46256569 GCCCCTCGAG
*
46256579 TGTAAATGATTGATTTGTCCGTGA
1 TGTAAATGACTGATTTGTCCGTGA
* *
46256603 TGTAAATGACTGATTTTTCTGTGA
1 TGTAAATGACTGATTTGTCCGTGA
46256627 TTGGT--ATGACTGATTTGT
1 -T-GTAAATGACTGATTTGT
46256645 TTGTGATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 33 0.92
25 1 0.03
26 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.24, T:0.45
Consensus pattern (24 bp):
TGTAAATGACTGATTTGTCCGTGA
Found at i:46256649 original size:24 final size:24
Alignment explanation
Indices: 46256608--46256665 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
46256598 CGTGATGTAA
46256608 ATGACTGATTTTTCTGTGATTGGT
1 ATGACTGATTTTTCTGTGATTGGT
*
46256632 ATGACTGATTTGTT-TGTGATTTGT
1 ATGACTGATTT-TTCTGTGATTGGT
46256656 ATGACTGATT
1 ATGACTGATT
46256666 CTCACCATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 30 0.94
25 2 0.06
ACGTcount: A:0.19, C:0.07, G:0.24, T:0.50
Consensus pattern (24 bp):
ATGACTGATTTTTCTGTGATTGGT
Found at i:46256769 original size:27 final size:26
Alignment explanation
Indices: 46256729--46256779 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
46256719 ATGGAGGAAG
46256729 CACTGTACTGGTGGCTCT-GCCACAAT
1 CACTGTACTGGTGGCT-TGGCCACAAT
*
46256755 CACTGTTATTGGTGGCTTGGCCACA
1 CACTG-TACTGGTGGCTTGGCCACA
46256780 TATACTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.18, C:0.27, G:0.25, T:0.29
Consensus pattern (26 bp):
CACTGTACTGGTGGCTTGGCCACAAT
Found at i:46256878 original size:32 final size:32
Alignment explanation
Indices: 46256837--46256975 Score: 181
Period size: 32 Copynumber: 4.4 Consensus size: 32
46256827 ACTGCAATGC
*
46256837 TACTGATGGCTTTGTACCGATCATATTACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
**
46256869 TACTGATGGCTTTGTGCCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
* * * * *
46256901 TACTAATGGCTCTATGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
*
46256933 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACTGT
*
46256964 TACTTATGGCTT
1 TACTGATGGCTT
46256976 GTAGCCATTC
Statistics
Matches: 91, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 11 0.12
32 80 0.88
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACTGT
Found at i:46258212 original size:23 final size:23
Alignment explanation
Indices: 46258180--46258224 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
46258170 ACCTTATGCA
46258180 TAAGGATTTATACAGTTTCTTCC
1 TAAGGATTTATACAGTTTCTTCC
*
46258203 TAAGGCTTTATACAGTTTCTTC
1 TAAGGATTTATACAGTTTCTTC
46258225 AAAAATCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.13, T:0.44
Consensus pattern (23 bp):
TAAGGATTTATACAGTTTCTTCC
Found at i:46262262 original size:74 final size:74
Alignment explanation
Indices: 46262141--46262291 Score: 275
Period size: 74 Copynumber: 2.0 Consensus size: 74
46262131 GAGGTATTGG
* * *
46262141 TTTGTTGGTTAAGTGTTAGTGAAATGTTCCTTGAAACCTAAATTCAAATCCCTTCTCTTGCATCA
1 TTTGTTGGTTAAATGTTAGTGAAATGTTCCTTGAAACCTAAATTCAAATCCATTCTCTCGCATCA
46262206 TTTTTATTA
66 TTTTTATTA
46262215 TTTGTTGGTTAAATGTTAGTGAAATGTTCCTTGAAACCTAAATTCAAATCCATTCTCTCGCATCA
1 TTTGTTGGTTAAATGTTAGTGAAATGTTCCTTGAAACCTAAATTCAAATCCATTCTCTCGCATCA
46262280 TTTTTATTA
66 TTTTTATTA
46262289 TTT
1 TTT
46262292 TACAAAATTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (74 bp):
TTTGTTGGTTAAATGTTAGTGAAATGTTCCTTGAAACCTAAATTCAAATCCATTCTCTCGCATCA
TTTTTATTA
Found at i:46263260 original size:16 final size:16
Alignment explanation
Indices: 46263239--46263270 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46263229 TGATTGAAAG
*
46263239 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
46263255 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
46263271 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Done.