Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 144 of 208
Found at i:47009878 original size:24 final size:24
Alignment explanation
Indices: 47009833--47009878 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
47009823 TTTTTCTTTA
* *
47009833 TATTATTAATTTTATTATATTAGT
1 TATTATTAATTATATTACATTAGT
47009857 TATTATTATATTATATT-CATTA
1 TATTATTA-ATTATATTACATTA
47009879 TACTTACATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTATTAATTATATTACATTAGT
Found at i:47009996 original size:12 final size:12
Alignment explanation
Indices: 47009979--47010008 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47009969 TTATTATTTT
47009979 ATATATATATAA
1 ATATATATATAA
*
47009991 ATATATATATAC
1 ATATATATATAA
47010003 ATATAT
1 ATATAT
47010009 GCGTATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAA
Found at i:47010255 original size:15 final size:15
Alignment explanation
Indices: 47010232--47010262 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47010222 ATTATGTTCT
47010232 TTTTATATATATATA
1 TTTTATATATATATA
*
47010247 TTTTGTATATATATA
1 TTTTATATATATATA
47010262 T
1 T
47010263 GCATTAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTATATATATATA
Found at i:47010255 original size:17 final size:16
Alignment explanation
Indices: 47010231--47010262 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
47010221 GATTATGTTC
47010231 TTTTTATATATATATA
1 TTTTTATATATATATA
47010247 TTTTGTATATATATAT
1 TTTT-TATATATATAT
47010263 GCATTAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTTATATATATATA
Found at i:47014014 original size:22 final size:22
Alignment explanation
Indices: 47013986--47014029 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
47013976 AAAATATGTG
47013986 AAAAAATGAAAAAA-TGAAAAAT
1 AAAAAATGAAAAAAGT-AAAAAT
*
47014008 AAAAAATGGAAAAAGTAAAAAT
1 AAAAAATGAAAAAAGTAAAAAT
47014030 GGAGAGGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (22 bp):
AAAAAATGAAAAAAGTAAAAAT
Found at i:47014020 original size:9 final size:8
Alignment explanation
Indices: 47013984--47014030 Score: 55
Period size: 7 Copynumber: 6.2 Consensus size: 8
47013974 GAAAAATATG
47013984 TGAAAAAA
1 TGAAAAAA
47013992 TGAAAAAA
1 TGAAAAAA
47014000 TG-AAAAA
1 TGAAAAAA
47014007 T-AAAAAA
1 TGAAAAAA
*
47014014 TGGAAAAA
1 TGAAAAAA
*
47014022 -GTAAAAA
1 TGAAAAAA
47014029 TG
1 TG
47014031 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
7 18 0.53
8 16 0.47
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (8 bp):
TGAAAAAA
Found at i:47014031 original size:15 final size:15
Alignment explanation
Indices: 47013987--47014032 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
47013977 AAATATGTGA
47013987 AAAAATGAAAAAAT-G
1 AAAAAT-AAAAAATGG
47014002 AAAAATAAAAAATGG
1 AAAAATAAAAAATGG
47014017 AAAAAGT-AAAAATGG
1 AAAAA-TAAAAAATGG
47014032 A
1 A
47014033 GAGGCTAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.24
15 21 0.72
16 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (15 bp):
AAAAATAAAAAATGG
Found at i:47015465 original size:50 final size:50
Alignment explanation
Indices: 47015401--47015962 Score: 319
Period size: 50 Copynumber: 11.3 Consensus size: 50
47015391 CAAATTAAAA
* *
47015401 AGATTGAAGCCACAACGGCAGATCTTACTTCCCTGGTGATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
* * *** * * * * ** **
47015451 AGATTGAAGTCACAACGGCGGTTCTGGTTTCCCCGAC-AGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGA-TGCAGTGGAGC
** * *
47015501 AGATTGAAGCCACAACGGTAGATCTTACGTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
* * * * *** * * * ** **
47015551 AGAATGAAGTCACAACAGTGGATCTGGTTTCCCTGAC-AGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGA-TGCAGTGGAGC
47015601 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGT-GAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
* * *** * * * * * * **
47015650 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAACGCAAT-TAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
*
47015699 AGATTAAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
* * *** * * * ** **
47015749 AGATTGAAGTCACAACAGCGGATCTGGTTTCCCCGAC-A-GCACAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATG--CAGTGGAGC
* *
47015799 ATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
* * *** * * * * ** **
47015849 AGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGAC-AGTTCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGA-TGCAGTGGAGC
** * *
47015899 AGATTGAAGCCACAACGGTAGATCTTACGTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
*
47015949 AGATTGAAGTCACA
1 AGATTGAAGCCACA
47015963 GCAGTAGATC
Statistics
Matches: 355, Mismatches: 146, Indels: 22
0.68 0.28 0.04
Matches are distributed among these distances:
48 1 0.00
49 73 0.21
50 279 0.79
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGATGCAGTGGAGC
Found at i:47015534 original size:100 final size:100
Alignment explanation
Indices: 47015342--47016086 Score: 1039
Period size: 100 Copynumber: 7.5 Consensus size: 100
47015332 TTCGTGTTGT
* * * * *
47015342 AGTGGAGAAGATTGAAGTCACAACGGCGGATCTGGTTTCTCCAATAGAGCAAATTAAAAAGATTG
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGC-AATTAAAAAGATTG
* *
47015407 AAGCCACAACGGCAGATCTTACTTCCCTGGTGATGC
65 AAGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
*
47015443 AGTGGAGCAGATTGAAGTCACAACGGCGGTTCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
** * *
47015508 AGCCACAACGGTAGATCTTACGTCCCTGGCGGTGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
* * * *
47015543 AGTGGAGCAGAATGAAGTCACAACAGTGGATCTGGTTTCCCTGACAGCGCAATTAAAAAGATTGA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
47015608 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
* * *
47015643 AGT-GAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAACGCAATT-AAAAGATTAA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
47015706 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
* * *
47015741 AGTGGAGCAGATTGAAGTCACAACAGCGGATCTGGTTTCCCCGACAGCACAATTAAAAATATTGA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
*
47015806 AGCCACAACGGCGGATCTTACTTCCCTGGCGGTGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
* **
47015841 AGTGGAGCAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGTTCAATTAAAAAGATTGA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
** * *
47015906 AGCCACAACGGTAGATCTTACGTCCCTGGCGGTGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
* * ** *
47015941 AGTGGAGCAGATTGAAGTCACAGCAGTAGATCTGGTTTCCCCGACAGCGCAATTAAAAATATTGA
1 AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
* * *
47016006 AGCCACAACGGCGGATCTTACCTCCTTAGC-AGTGC
66 AGCCACAACGGCGGATCTTACTTCCCTGGCGA-TGC
* * * * * *
47016041 AGTTGAACAGATTGAAG-CTACGATGGCGGATCTTGTTTCCTCGACA
1 AGTGGAGCAGATTGAAGTC-ACAACGGCGGATCTGGTTTCCCCGACA
47016087 TTGTAATTGG
Statistics
Matches: 577, Mismatches: 63, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
98 47 0.08
99 91 0.16
100 395 0.68
101 44 0.08
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (100 bp):
AGTGGAGCAGATTGAAGTCACAACGGCGGATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGA
AGCCACAACGGCGGATCTTACTTCCCTGGCGATGC
Found at i:47016055 original size:50 final size:49
Alignment explanation
Indices: 47015401--47016074 Score: 149
Period size: 50 Copynumber: 13.5 Consensus size: 49
47015391 CAAATTAAAA
* * ** * *
47015401 AGATTGAAGCCACAACGGCAGATCTTACTTCCCT-GGTGATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAG-TGCAGTTGAAC
* * * * * * * *
47015451 AGATTGAAGTCACAACGGCGGTTCTGGTTTCC-CCGA-CAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATC---TTACCTCCTAGCAGTGCAGTTGAAC
** * * * * *
47015501 AGATTGAAGCCACAACGGTAGATCTTACGTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAGTGCAGTTGAAC
* * * * ** * * * *
47015551 AGAATGAAGTCACAACAGTGGATCTGGTTTC-CCT-GACAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCT--TACCTCCTAG-CAGTGCAGTTGAAC
* * *
47015601 AGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGC-GATGCAG-TGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAG-TGCAGTTGAAC
* * * * ** * *
47015650 AGATTGAAGTCACAACGGCAGATCTGGTTTCC-CCGA-CAACGCAATT-AAA
1 AGATTGAAGCCACAACGGCGGATC---TTACCTCCTAGCAGTGCAGTTGAAC
* * * * *
47015699 AGATTAAAGCCACAACGGCGGATCTTACTTCCCTGGC-GATGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAG-TGCAGTTGAAC
* * * * ** * * *
47015749 AGATTGAAGTCACAACAGCGGATCTGGTTTCC-CCGA-CAGCACAATTAAAA
1 AGATTGAAGCCACAACGGCGGATC---TTACCTCCTAGCAGTGCAGTTGAAC
* * * * * *
47015799 ATATTGAAGCCACAACGGCGGATCTTACTTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAGTGCAGTTGAAC
* * * * * * * *
47015849 AGATTGAAGTCACAACGGCAGATCTGGTTTCC-CCGA-CAGTTCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATC---TTACCTCCTAGCAGTGCAGTTGAAC
** * * * * *
47015899 AGATTGAAGCCACAACGGTAGATCTTACGTCCCTGGCGGTGCAGTGGAGC
1 AGATTGAAGCCACAACGGCGGATCTTACCT-CCTAGCAGTGCAGTTGAAC
* * * ** * * * * * *
47015949 AGATTGAAGTCACAGCAGTAGATCTGGTTTCC-CCGA-CAGCGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATC---TTACCTCCTAGCAGTGCAGTTGAAC
*
47015999 ATATTGAAGCCACAACGGCGGATCTTACCTCCTTAGCAGTGCAGTTGAAC
1 AGATTGAAGCCACAACGGCGGATCTTACCTCC-TAGCAGTGCAGTTGAAC
* * *
47016049 AGATTGAAGCTACGATGGCGGATCTT
1 AGATTGAAGCCACAACGGCGGATCTT
47016075 GTTTCCTCGA
Statistics
Matches: 416, Mismatches: 165, Indels: 86
0.62 0.25 0.13
Matches are distributed among these distances:
46 3 0.01
47 13 0.03
48 5 0.01
49 64 0.15
50 304 0.73
51 11 0.03
52 4 0.01
53 12 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (49 bp):
AGATTGAAGCCACAACGGCGGATCTTACCTCCTAGCAGTGCAGTTGAAC
Found at i:47017614 original size:20 final size:21
Alignment explanation
Indices: 47017579--47017617 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
47017569 TTTTTTTATA
*
47017579 TTATTAATTTTATTATATTAG
1 TTATTAATTATATTATATTAG
47017600 TTATT-ATTATATTATATT
1 TTATTAATTATATTATATT
47017618 CATTATACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (21 bp):
TTATTAATTATATTATATTAG
Found at i:47017622 original size:24 final size:24
Alignment explanation
Indices: 47017577--47017622 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
47017567 AGTTTTTTTA
* *
47017577 TATTATTAATTTTATTATATTAGT
1 TATTATTAATTATATTACATTAGT
47017601 TATTATTATATTATATT-CATTA
1 TATTATTA-ATTATATTACATTA
47017623 TACTTACATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTATTAATTATATTACATTAGT
Found at i:47017623 original size:20 final size:19
Alignment explanation
Indices: 47017574--47017636 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
47017564 TTTAGTTTTT
*
47017574 TTATATTATTA--ATTTTA
1 TTATATTATTATTATTATA
47017591 TTATATTAGTTATTATTATA
1 TTATATTA-TTATTATTATA
*
47017611 TTATATTCATTA-TACTTACA
1 TTATATT-ATTATTA-TTATA
47017631 TTATAT
1 TTATAT
47017637 GCGCGTATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 8 0.21
18 3 0.08
19 2 0.05
20 25 0.64
21 1 0.03
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (19 bp):
TTATATTATTATTATTATA
Found at i:47017741 original size:12 final size:12
Alignment explanation
Indices: 47017724--47017753 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47017714 TTATTATTAT
47017724 ATATATATATAA
1 ATATATATATAA
*
47017736 ATATATATATAC
1 ATATATATATAA
47017748 ATATAT
1 ATATAT
47017754 GCGTATATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATATATATAA
Found at i:47017744 original size:20 final size:19
Alignment explanation
Indices: 47017691--47017752 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 19
47017681 TTTAAAATTC
*
47017691 ATATAAATTTTATATATACT
1 ATATAAATATTATATATA-T
* * *
47017711 TTATTATTATTATATATAT
1 ATATAAATATTATATATAT
*
47017730 ATATAAATA-TATATATAC
1 ATATAAATATTATATATAT
47017748 ATATA
1 ATATA
47017753 TGCGTATATA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 13 0.38
19 7 0.21
20 14 0.41
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATAAATATTATATATAT
Found at i:47020485 original size:18 final size:18
Alignment explanation
Indices: 47020464--47020518 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
47020454 AGTTTGGAAA
47020464 ATTAATACAGTTCACCAT
1 ATTAATACAGTTCACCAT
*
47020482 ATTAATACA-TATCACCAA
1 ATTAATACAGT-TCACCAT
*
47020500 ATTAACACAGTTCACCAT
1 ATTAATACAGTTCACCAT
47020518 A
1 A
47020519 ATTATATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 1 0.03
18 30 0.94
19 1 0.03
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.29
Consensus pattern (18 bp):
ATTAATACAGTTCACCAT
Found at i:47020550 original size:36 final size:36
Alignment explanation
Indices: 47020462--47020542 Score: 112
Period size: 36 Copynumber: 2.2 Consensus size: 36
47020452 ATAGTTTGGA
*
47020462 AAATTAATACAGTTCACCATATTAATACATATCACC
1 AAATTAACACAGTTCACCATATTAATACATATCACC
47020498 AAATTAACACAGTTCACCATAATTATATA-AT-TCACC
1 AAATTAACACAGTTCACCAT-ATTA-ATACATATCACC
*
47020534 AAGTTAACA
1 AAATTAACA
47020543 TGGTTCACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 32 0.78
37 6 0.15
38 3 0.07
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.30
Consensus pattern (36 bp):
AAATTAACACAGTTCACCATATTAATACATATCACC
Found at i:47024231 original size:13 final size:13
Alignment explanation
Indices: 47024213--47024239 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47024203 TTTCCAGAAA
47024213 TTATGAATTTATT
1 TTATGAATTTATT
47024226 TTATGAATTTATT
1 TTATGAATTTATT
47024239 T
1 T
47024240 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:47024418 original size:50 final size:50
Alignment explanation
Indices: 47024343--47024527 Score: 257
Period size: 50 Copynumber: 3.7 Consensus size: 50
47024333 AAAGAAGTCT
47024343 CATGTAAGACCATGTCTGGGACATGG-TGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGAT-TTGGCACCGAGATGAGAGGTCC
*
47024393 CATGTAAGATCATGTCTGGGACATGGATTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGATTTGGCACCGAGATGAGAGGTCC
* * * **
47024443 CCTGTAAGACCATGTCTGGGACATGGCA-TGGGCACCGATATGAGAAAATCC
1 CATGTAAGACCATGTCTGGGACATGG-ATTTGGCACCGAGATGAG-AGGTCC
* *
47024494 CACGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGATTTGGCA
47024528 TGTTATTATC
Statistics
Matches: 120, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
50 85 0.71
51 35 0.29
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGATTTGGCACCGAGATGAGAGGTCC
Found at i:47027801 original size:2 final size:2
Alignment explanation
Indices: 47027789--47027827 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
47027779 TGATAAATAG
* * *
47027789 GT GT GT AT GT GT GT AT GT GT GT AT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
47027828 CACGTACACT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.08, C:0.00, G:0.44, T:0.49
Consensus pattern (2 bp):
GT
Found at i:47027827 original size:8 final size:8
Alignment explanation
Indices: 47027789--47027826 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
47027779 TGATAAATAG
47027789 GTGTGTAT
1 GTGTGTAT
47027797 GTGTGTAT
1 GTGTGTAT
47027805 GTGTGTAT
1 GTGTGTAT
*
47027813 GTGTGTGT
1 GTGTGTAT
47027821 GTGTGT
1 GTGTGT
47027827 GCACGTACAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (8 bp):
GTGTGTAT
Found at i:47033801 original size:13 final size:13
Alignment explanation
Indices: 47033783--47033807 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47033773 TGATTTACTA
47033783 AATTAACCTTATT
1 AATTAACCTTATT
47033796 AATTAACCTTAT
1 AATTAACCTTAT
47033808 AATCACTCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTAACCTTATT
Found at i:47037341 original size:14 final size:14
Alignment explanation
Indices: 47037322--47037348 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47037312 ATTATTTGCC
47037322 TATAACCAAAACCT
1 TATAACCAAAACCT
47037336 TATAACCAAAACC
1 TATAACCAAAACC
47037349 CATAAACCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (14 bp):
TATAACCAAAACCT
Found at i:47041355 original size:26 final size:27
Alignment explanation
Indices: 47041316--47041368 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
47041306 TTTTCACTAT
*
47041316 TTCATAAAACATATTTTA-TTTAAAAA
1 TTCATAAAACATATTTTACATTAAAAA
47041342 TTCA-AAAACTATATTTTACATTAAAAA
1 TTCATAAAAC-ATATTTTACATTAAAAA
47041369 ATTATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 5 0.21
26 12 0.50
27 7 0.29
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (27 bp):
TTCATAAAACATATTTTACATTAAAAA
Found at i:47041611 original size:14 final size:14
Alignment explanation
Indices: 47041592--47041624 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
47041582 GCAGCTTGTG
47041592 TATTTCTTTTTAAA
1 TATTTCTTTTTAAA
*
47041606 TATTTCTTTTTTAA
1 TATTTCTTTTTAAA
47041620 TATTT
1 TATTT
47041625 TATTATAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTTCTTTTTAAA
Found at i:47042095 original size:4 final size:4
Alignment explanation
Indices: 47042088--47042114 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
47042078 AATATATATA
47042088 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
47042115 AATTTTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:47042340 original size:7 final size:7
Alignment explanation
Indices: 47042328--47042362 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
47042318 ATTTAATCCT
47042328 AATTCTA
1 AATTCTA
47042335 AATTCTA
1 AATTCTA
47042342 AATTCTA
1 AATTCTA
47042349 AATTCTA
1 AATTCTA
47042356 AATTCTA
1 AATTCTA
47042363 TCAATTTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (7 bp):
AATTCTA
Found at i:47042946 original size:28 final size:28
Alignment explanation
Indices: 47042915--47042970 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
47042905 CTAACTCTGG
47042915 ATTTAATTTTCAATTTCAAGGACTAACT
1 ATTTAATTTTCAATTTCAAGGACTAACT
47042943 ATTTAATTTTCAATTTCAAGGACTAACT
1 ATTTAATTTTCAATTTCAAGGACTAACT
47042971 TCGAGGACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (28 bp):
ATTTAATTTTCAATTTCAAGGACTAACT
Found at i:47044720 original size:24 final size:24
Alignment explanation
Indices: 47044693--47044742 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
47044683 TTATTTTCCG
47044693 TTCTCTTTTGCTTCTGCCCCTGTT
1 TTCTCTTTTGCTTCTGCCCCTGTT
47044717 TTCTCTTTTGCTTCTGCCCCTGTT
1 TTCTCTTTTGCTTCTGCCCCTGTT
47044741 TT
1 TT
47044743 TCTCCCTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.00, C:0.32, G:0.12, T:0.56
Consensus pattern (24 bp):
TTCTCTTTTGCTTCTGCCCCTGTT
Found at i:47048843 original size:63 final size:62
Alignment explanation
Indices: 47048744--47048871 Score: 202
Period size: 63 Copynumber: 2.0 Consensus size: 62
47048734 GTTGAACTTT
* * *
47048744 TTTATTGTTAATATTTTCTCTACCATGATTATCAAGGAGTGAAAATTATGGATTGGAGGCTAG
1 TTTATTGTTAATATTTTCTCTACCATGATTATCAAGGAGTGAAAACTATGCA-TAGAGGCTAG
* *
47048807 TTTATTGTTAGTCTTTTCTCTACCATGATTATCAAGGAGTGAAAACTATGCATAGAGGCTAG
1 TTTATTGTTAATATTTTCTCTACCATGATTATCAAGGAGTGAAAACTATGCATAGAGGCTAG
47048869 TTT
1 TTT
47048872 GTTGCTATCA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
62 12 0.20
63 48 0.80
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (62 bp):
TTTATTGTTAATATTTTCTCTACCATGATTATCAAGGAGTGAAAACTATGCATAGAGGCTAG
Found at i:47050023 original size:17 final size:17
Alignment explanation
Indices: 47050001--47050034 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
47049991 TTGGTAATGG
47050001 CTAAAGATTTGAACAAA
1 CTAAAGATTTGAACAAA
47050018 CTAAAGATTTGAACAAA
1 CTAAAGATTTGAACAAA
47050035 GAACATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CTAAAGATTTGAACAAA
Found at i:47071391 original size:50 final size:50
Alignment explanation
Indices: 47071331--47071547 Score: 253
Period size: 50 Copynumber: 4.3 Consensus size: 50
47071321 AGATCCTATG
* * * * *
47071331 TAAGACCATGTCTAGGAAATTGCGTTGCCACCAAGATGAGAGGTCTCCCA
1 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCCA
47071381 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG--TCCCA
1 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCCA
* *
47071429 TGTAAGACCCTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCA
1 --TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCCA
* * * * *
47071481 TAAGACCATGTCTGGGACATTGCATGGGCACCGATATGAGA--ACTCCCA
1 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCCA
*
47071529 TGTAAGACCATATCTGGGA
1 --TAAGACCATGTCTGGGA
47071548 TATGACATTC
Statistics
Matches: 146, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
48 10 0.07
50 132 0.90
52 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCTCCCA
Found at i:47071511 original size:100 final size:100
Alignment explanation
Indices: 47071328--47071547 Score: 314
Period size: 100 Copynumber: 2.2 Consensus size: 100
47071318 ATGAGATCCT
* * *
47071328 ATGTAAGACCATGTCTAGGAAATTGCGTTGCCACCAAGATGAGAGGTCTCCCATAAGACCATGTC
1 ATGTAAGACCATGTCTGGGAAATGGCGTTGCCACCAAGATGAGAGGTCCCCCATAAGACCATGTC
* * **
47071393 TGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
66 TGGGACATGGCATGGGCACCGAGATGAGAACTCCC
* * * *
47071428 ATGTAAGACCCTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCATAAGACCATGTC
1 ATGTAAGACCATGTCTGGGAAATGGCGTTGCCACCAAGATGAGAGGTCCCCCATAAGACCATGTC
* *
47071493 TGGGACATTGCATGGGCACCGATATGAGAACTCCC
66 TGGGACATGGCATGGGCACCGAGATGAGAACTCCC
*
47071528 ATGTAAGACCATATCTGGGA
1 ATGTAAGACCATGTCTGGGA
47071548 TATGACATTC
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 105 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (100 bp):
ATGTAAGACCATGTCTGGGAAATGGCGTTGCCACCAAGATGAGAGGTCCCCCATAAGACCATGTC
TGGGACATGGCATGGGCACCGAGATGAGAACTCCC
Found at i:47079834 original size:40 final size:40
Alignment explanation
Indices: 47079798--47079918 Score: 197
Period size: 40 Copynumber: 3.0 Consensus size: 40
47079788 ATGTGCATTG
* * * *
47079798 AGGGGTACCCAAGTACAAATAAGGACACGTAGGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATC
*
47079838 AGGGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATC
47079878 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATC
1 AGGGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATC
47079918 A
1 A
47079919 TTCAATAATT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (40 bp):
AGGGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATC
Found at i:47079851 original size:80 final size:80
Alignment explanation
Indices: 47079750--47079918 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 80
47079740 AAGCACAAAT
* * * * * * * *
47079750 GTGCGATCAGGGGCATCGAAGTGCAGACAGGGGTACATATGTGCATTGAGGGGTACCCAAGTACA
1 GTGCAATCAGGGGCACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCCAAGTACA
*
47079815 AATAAGGACACGTAG
66 AATAAGGACACGTAA
* * *
47079830 GTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGAAGTACA
1 GTGCAATCAGGGGCACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCCAAGTACA
* *
47079895 AATAGGGGCACGTAA
66 AATAAGGACACGTAA
47079910 GTGCAATCA
1 GTGCAATCA
47079919 TTCAATAATT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.16
Consensus pattern (80 bp):
GTGCAATCAGGGGCACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCCAAGTACA
AATAAGGACACGTAA
Found at i:47079862 original size:20 final size:20
Alignment explanation
Indices: 47079837--47079902 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
47079827 TAGGTGCAAT
47079837 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * *
47079857 CAGGGGCA-CGTAAGTGCAAT
1 CAGGGGTACCG-AAGTACAAA
47079877 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
*
47079897 TAGGGG
1 CAGGGG
47079903 CACGTAAGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 33 0.89
21 2 0.05
ACGTcount: A:0.35, C:0.18, G:0.35, T:0.12
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:47079911 original size:20 final size:20
Alignment explanation
Indices: 47079808--47079911 Score: 72
Period size: 20 Copynumber: 5.2 Consensus size: 20
47079798 AGGGGTACCC
* *
47079808 AAGTACAAATAAGGACACGT
1 AAGTACAAATAGGGGCACGT
* * *
47079828 AGGTGC-AATCAGGGGTACCG-
1 AAGTACAAAT-AGGGGCA-CGT
*
47079848 AAGTACAAACAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
* *
47079868 AAGTGC-AATCAGGGGTACCG-
1 AAGTACAAAT-AGGGGCA-CGT
47079888 AAGTACAAATAGGGGCACGT
1 AAGTACAAATAGGGGCACGT
47079908 AAGT
1 AAGT
47079912 GCAATCATTC
Statistics
Matches: 62, Mismatches: 14, Indels: 16
0.67 0.15 0.17
Matches are distributed among these distances:
19 9 0.15
20 44 0.71
21 9 0.15
ACGTcount: A:0.38, C:0.17, G:0.31, T:0.14
Consensus pattern (20 bp):
AAGTACAAATAGGGGCACGT
Found at i:47090755 original size:50 final size:50
Alignment explanation
Indices: 47090628--47090872 Score: 217
Period size: 50 Copynumber: 4.9 Consensus size: 50
47090618 GATAATAACA
* * ** * * *
47090628 TGCCAAAGCCATGTCCTAGACATGGTCTTACCTGGGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * * ** **
47090677 TTCCAATGTCATATCCTAGATGTGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * *
47090727 TGCCTATGCCATGTCCTAGACATGGTCTTACA-GAGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATG-GGACCTCTCATATCGG
* * * *
47090777 TGCCAACGCCATGTCCTAGACATAGTCTTACATGGGACCTCTTATCTCAG
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
47090827 TGCCAACGCCATGTCCCAAACATGGTCTTAAATGGGACCTCTCATA
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATA
47090873 ATCTCAATGA
Statistics
Matches: 158, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 36 0.23
50 120 0.76
51 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (50 bp):
TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:47090908 original size:56 final size:50
Alignment explanation
Indices: 47090734--47090919 Score: 194
Period size: 50 Copynumber: 3.6 Consensus size: 50
47090724 CGGTGCCTAT
* * ***
47090734 GCCATGTCCTAGACATGGTCTTACA-GAGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATG-GGACCTCTTATCTCAATGCCAAC
* * *
47090784 GCCATGTCCTAGACATAGTCTTACATGGGACCTCTTATCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAATGCCAAC
* *
47090834 GCCATGTCCCAAACATGGTCTTAAATGGGACCTCTCATAATCTCAATGATCCAAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT--T-ATCTCAATG--CC-AAC
* *
47090890 GCCATATCCCAGATATGGTCTTACATGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
47090920 TCTCATTCCT
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
50 75 0.65
51 1 0.01
52 1 0.01
53 8 0.07
55 2 0.02
56 29 0.25
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAATGCCAAC
Found at i:47100572 original size:43 final size:43
Alignment explanation
Indices: 47100515--47100663 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 43
47100505 TTTATACTTT
* * *
47100515 GGTTTGTCTGATGATGCACTATGTGTGCCAGTATATTTGCTTC
1 GGTTTATCCGATGATGCACTATGTGTGCCAATATATTTGCTTC
* * * * * *
47100558 GGTTAATCCGATGATGTACAATGTATGCCAATATGTTTGCTAC
1 GGTTTATCCGATGATGCACTATGTGTGCCAATATATTTGCTTC
* * * * * * *
47100601 GGTTTGTCCAATTATACATTGTGTGTGCCAATATATTTGTTTC
1 GGTTTATCCGATGATGCACTATGTGTGCCAATATATTTGCTTC
*
47100644 GGTTTATCTGATGATGCACT
1 GGTTTATCCGATGATGCACT
47100664 GAGGTGCTAG
Statistics
Matches: 78, Mismatches: 28, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
43 78 1.00
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.41
Consensus pattern (43 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAATATATTTGCTTC
Found at i:47115046 original size:8 final size:8
Alignment explanation
Indices: 47115033--47115070 Score: 76
Period size: 8 Copynumber: 4.8 Consensus size: 8
47115023 TTAAATAATA
47115033 TTTATTAT
1 TTTATTAT
47115041 TTTATTAT
1 TTTATTAT
47115049 TTTATTAT
1 TTTATTAT
47115057 TTTATTAT
1 TTTATTAT
47115065 TTTATT
1 TTTATT
47115071 GTTTAGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTATTAT
Found at i:47124631 original size:34 final size:34
Alignment explanation
Indices: 47124593--47124665 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 34
47124583 CAGAAACTTA
47124593 ATAAGAATGACT-TTTGCTACTG-AGTTGAACTATT
1 ATAAGAAT-ACTATTTGCTACTGTA-TTGAACTATT
* * *
47124627 ATAAGCATATTATTTGCTACTGTATTGAACTGTT
1 ATAAGAATACTATTTGCTACTGTATTGAACTATT
47124661 ATAAG
1 ATAAG
47124666 CATATCGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 2 0.06
34 31 0.91
35 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (34 bp):
ATAAGAATACTATTTGCTACTGTATTGAACTATT
Found at i:47124666 original size:34 final size:34
Alignment explanation
Indices: 47124605--47124670 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 34
47124595 AAGAATGACT
47124605 TTTGCTACTGAGTTGAACTATTATAAGCATATTA
1 TTTGCTACTGAGTTGAACTATTATAAGCATATTA
*
47124639 TTTGCTACTGTA-TTGAACTGTTATAAGCATAT
1 TTTGCTACTG-AGTTGAACTATTATAAGCATAT
47124671 CGATTTTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (34 bp):
TTTGCTACTGAGTTGAACTATTATAAGCATATTA
Found at i:47124686 original size:34 final size:34
Alignment explanation
Indices: 47124617--47124702 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
47124607 TGCTACTGAG
* * *
47124617 TTGAACTATTATAAGCATATTATTTGCTACTGTA
1 TTGAACTGTTATAAGCATATGATTTGCTACCGTA
*
47124651 TTGAACTGTTATAAGCATATCGATTT-TTACCGTA
1 TTGAACTGTTATAAGCATAT-GATTTGCTACCGTA
** *
47124685 TTGTTCTGTTAAAAGCAT
1 TTGAACTGTTATAAGCAT
47124703 GATAAATACT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 40 0.91
35 4 0.09
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (34 bp):
TTGAACTGTTATAAGCATATGATTTGCTACCGTA
Found at i:47124947 original size:25 final size:25
Alignment explanation
Indices: 47124860--47124943 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 25
47124850 CAGGTAACAC
* *
47124860 GCCATAAAGACTTTTCATAAGATTA
1 GCCACAAAGACTTTTCACAAGATTA
* *
47124885 GCCACAAAGAC--TTCCCAAGTAATA
1 GCCACAAAGACTTTTCACAAG-ATTA
* * *
47124909 CGCTACATAGGCTTTTCACAAGATTA
1 -GCCACAAAGACTTTTCACAAGATTA
47124935 GCCACAAAG
1 GCCACAAAG
47124944 GCTTCCCAAG
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
23 6 0.14
24 3 0.07
25 25 0.57
26 3 0.07
27 7 0.16
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (25 bp):
GCCACAAAGACTTTTCACAAGATTA
Found at i:47126973 original size:12 final size:12
Alignment explanation
Indices: 47126963--47127010 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
47126953 TATACTATAT
*
47126963 GTTATAATATAAA
1 GTTATAATA-ATA
47126976 GTTAATAATAATA
1 GTT-ATAATAATA
*
47126989 GTAATAATAATA
1 GTTATAATAATA
47127001 GTTATAATAA
1 GTTATAATAA
47127011 AAGAAAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 18 0.58
13 7 0.23
14 6 0.19
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (12 bp):
GTTATAATAATA
Found at i:47131022 original size:26 final size:27
Alignment explanation
Indices: 47130992--47131044 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
47130982 TTTGTTTTTC
47130992 TATTTCTAA-AAATAAACATCTCAATA
1 TATTTCTAATAAATAAACATCTCAATA
* *
47131018 TATTTCTAATTAAATAATCTTCTCAAT
1 TATTTCTAA-TAAATAAACATCTCAAT
47131045 CCAATTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
28 14 0.61
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTTCTAATAAATAAACATCTCAATA
Found at i:47131284 original size:57 final size:57
Alignment explanation
Indices: 47131211--47131389 Score: 220
Period size: 57 Copynumber: 3.1 Consensus size: 57
47131201 GGTCATTTTT
* * * *
47131211 ATTTTTATTTTTATTTTAGAGAAAACCAAATTCATTTCCAAATGATTCATTTTTTCC
1 ATTTTCATTTTCATTTTGGAGAAAACCAAATTCATTTCCAAATGATTCATTTTCTCC
* * *
47131268 ATTTTCGTTTTCATTTTGGAGAAAA-CAATAATCATTTCCAAATGATTCCTTTTCTCC
1 ATTTTCATTTTCATTTTGGAGAAAACCAA-ATTCATTTCCAAATGATTCATTTTCTCC
* *
47131325 ATTTTCATTTTCATTTTGGAGAAAACCATAATT-ATTTTCAAATGTTTC-TCATTTCTCC
1 ATTTTCATTTTCATTTTGGAGAAAACCA-AATTCATTTCCAAATGATTCAT--TTTCTCC
47131383 ATTTTCA
1 ATTTTCA
47131390 ACATTTCTAT
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
56 4 0.04
57 83 0.78
58 18 0.17
59 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.47
Consensus pattern (57 bp):
ATTTTCATTTTCATTTTGGAGAAAACCAAATTCATTTCCAAATGATTCATTTTCTCC
Found at i:47139467 original size:7 final size:7
Alignment explanation
Indices: 47139455--47139483 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
47139445 AGATAAGGTT
47139455 GTTAGTG
1 GTTAGTG
47139462 GTTAGTG
1 GTTAGTG
47139469 GTTAGTG
1 GTTAGTG
47139476 GTTAGTG
1 GTTAGTG
47139483 G
1 G
47139484 GGGAGTGGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.45, T:0.41
Consensus pattern (7 bp):
GTTAGTG
Found at i:47139520 original size:5 final size:5
Alignment explanation
Indices: 47139504--47139549 Score: 83
Period size: 5 Copynumber: 9.0 Consensus size: 5
47139494 ATTATGTGTA
47139504 ATTTT AATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT -ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
47139550 CCCTTTCTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 35 0.88
6 5 0.12
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:47140638 original size:24 final size:25
Alignment explanation
Indices: 47140592--47140639 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
47140582 TAAGGGTAGG
*
47140592 AATCTGTATATCTGTATGTTCTGAA
1 AATCTGTATATCTGTATGATCTGAA
47140617 AATCTG-AT-TCTGATATGATCTGA
1 AATCTGTATATCTG-TATGATCTGA
47140640 CTCTGCTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (25 bp):
AATCTGTATATCTGTATGATCTGAA
Found at i:47141509 original size:28 final size:28
Alignment explanation
Indices: 47141478--47141533 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
47141468 ATATTAGAGT
47141478 TATGATCCCCAAATTACATACAAGCTAA
1 TATGATCCCCAAATTACATACAAGCTAA
47141506 TATGATCCCCAAATTACATACAAGCTAA
1 TATGATCCCCAAATTACATACAAGCTAA
47141534 CTTTCTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.25, G:0.07, T:0.25
Consensus pattern (28 bp):
TATGATCCCCAAATTACATACAAGCTAA
Found at i:47142959 original size:29 final size:31
Alignment explanation
Indices: 47142913--47142970 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
47142903 CTAAATTTTG
47142913 AAATTCCTAAAAATAGAA-A-TATAAGGATT
1 AAATTCCTAAAAATAGAAGAGTATAAGGATT
*
47142942 AAATTCC-AAAACTGAGAAGAGTATAAGGA
1 AAATTCCTAAAAAT-AGAAGAGTATAAGGA
47142971 CCTATGCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 5 0.20
29 11 0.44
30 1 0.04
31 8 0.32
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.22
Consensus pattern (31 bp):
AAATTCCTAAAAATAGAAGAGTATAAGGATT
Found at i:47148385 original size:24 final size:24
Alignment explanation
Indices: 47148353--47148402 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
47148343 CTATAAAGGC
47148353 TGATGTTAGATATACCACAATCTA
1 TGATGTTAGATATACCACAATCTA
47148377 TGATGTTAGATATACCACAATCTA
1 TGATGTTAGATATACCACAATCTA
47148401 TG
1 TG
47148403 TAGAGGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (24 bp):
TGATGTTAGATATACCACAATCTA
Found at i:47166284 original size:17 final size:17
Alignment explanation
Indices: 47166241--47166291 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
47166231 AACAAGGACA
*
47166241 AAAAT-GAAAAGAATAG
1 AAAATAGAAAAGAAAAG
*
47166257 AAGAACA-AAAAGAAAAG
1 AA-AATAGAAAAGAAAAG
47166274 AAAATAGAAAAGGAAAAG
1 AAAATAGAAAA-GAAAAG
47166292 CTAATGTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 5 0.18
17 17 0.61
18 6 0.21
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.06
Consensus pattern (17 bp):
AAAATAGAAAAGAAAAG
Found at i:47171193 original size:40 final size:40
Alignment explanation
Indices: 47171149--47171496 Score: 633
Period size: 40 Copynumber: 8.7 Consensus size: 40
47171139 GCAAACACAT
* *
47171149 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47171189 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47171229 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47171269 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47171309 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47171349 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47171389 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47171429 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47171469 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
47171497 TCCAATGCTC
Statistics
Matches: 300, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 300 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:47176007 original size:28 final size:28
Alignment explanation
Indices: 47175961--47176062 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
47175951 TGACTTTCGA
* *
47175961 CACTAAGTGTGTGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
47175989 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
47176017 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
47176045 CACTAAGTGTGCGAGTTT
1 CACTAAGTGTGCGAGTTT
47176063 GATTATTGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:47176076 original size:28 final size:28
Alignment explanation
Indices: 47175961--47176080 Score: 101
Period size: 28 Copynumber: 4.3 Consensus size: 28
47175951 TGACTTTCGA
* *
47175961 CACTAAGTGTGTGAATTTA--ATTGTAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
47175989 CACTAAGTGTGCGAGTTTA--ATTGTAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
*
47176017 CACTAAGTGTGCGAGTTTA--ATGGCAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
47176045 CACTAAGTGTGCGAGTTTGATTATTGAA-
1 CACTAAGTGTGCGAGTTT-ATTATTGAAG
47176073 CACTAAGT
1 CACTAAGT
47176081 CTACGAACTT
Statistics
Matches: 84, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
28 78 0.93
29 3 0.04
31 3 0.04
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTATTATTGAAG
Found at i:47176077 original size:56 final size:55
Alignment explanation
Indices: 47175960--47176080 Score: 161
Period size: 56 Copynumber: 2.2 Consensus size: 55
47175950 TTGACTTTCG
* * *
47175960 ACACTAAGTGTGTGAATTTAATTGTAAAGCACTAAGTGTGCGAGTTTAATTGTAA
1 ACACTAAGTGTGCGAATTTAATGGCAAAGCACTAAGTGTGCGAGTTTAATTGTAA
* * * *
47176015 AGCACTAAGTGTGCGAGTTTAATGGCAAAGCACTAAGTGTGCGAGTTTGATTATTGA
1 A-CACTAAGTGTGCGAATTTAATGGCAAAGCACTAAGTGTGCGAGTTTAATT-GTAA
47176072 ACACTAAGT
1 ACACTAAGT
47176081 CTACGAACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
55 1 0.02
56 53 0.93
57 3 0.05
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (55 bp):
ACACTAAGTGTGCGAATTTAATGGCAAAGCACTAAGTGTGCGAGTTTAATTGTAA
Found at i:47176809 original size:23 final size:23
Alignment explanation
Indices: 47176745--47177416 Score: 500
Period size: 23 Copynumber: 28.8 Consensus size: 23
47176735 AAAATTGGTT
* *
47176745 TATATATGCTGCCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
*
47176770 -ATAAATGCTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
* * *
47176792 TATACATGCTATCAAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
*
47176815 TATA-AGTGCTGTCCAA-ATTGCTA
1 TATACA-TGCTGTCCAATTTTG-TA
* *
47176838 CATATATGCTG-CCTAATTTTGGTGA
1 TATACATGCTGTCC-AATTTT-GT-A
*
47176863 -ATAAATGCTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
*
47176885 TATACATGCTGTCCAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
* * *
47176908 TATA-AGTGTTGTCCAAATTGGTA
1 TATACA-TGCTGTCCAATTTTGTA
* *
47176931 TATATATGCTGCCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
*
47176956 -ATAAATGCTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
*
47176978 TATACATGCTGTCCAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
* *
47177001 TATA-AGTGCTGTCCAAATTGGTA
1 TATACA-TGCTGTCCAATTTTGTA
* *
47177024 TATATATGCTGCCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
*
47177049 -ATAAATGCTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
* *
47177071 TATACATGCTGTCAAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
47177094 TATA-AGTGCTGTCCAA-TTTGCTA
1 TATACA-TGCTGTCCAATTTTG-TA
* *
47177117 CATATATGCTGTCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
* *
47177142 -ATAAATGCTATCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
** * *
47177164 TATACATGCCATCAAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
* *
47177187 TATA-AGTGCTGTCCAAATTGATATA
1 TATACA-TGCTGTCC-AATT-TTGTA
* *
47177212 TATATATGCTGCCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
* *
47177237 -ATAAATGTTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
* *
47177259 TATACATGCTGTCAAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
* *
47177282 TATA-AGTGCTGTCCAAATTGGTA
1 TATACA-TGCTGTCCAATTTTGTA
* *
47177305 TATATATGCTGCCCAATTTTGGTGA
1 TATACATGCTGTCCAATTTT-GT-A
*
47177330 -ATAAATGCTGTCCAATTTTGTA
1 TATACATGCTGTCCAATTTTGTA
* * *
47177352 TATACATGCTTTCAAATTTTGTG
1 TATACATGCTGTCCAATTTTGTA
* *
47177375 TATA-AGTGATGTCCAA-ATTGATA
1 TATACA-TGCTGTCCAATTTTG-TA
47177398 TATACATGCTG-CTCAATTT
1 TATACATGCTGTC-CAATTT
47177417 CTGATGTATA
Statistics
Matches: 520, Mismatches: 83, Indels: 89
0.75 0.12 0.13
Matches are distributed among these distances:
22 27 0.05
23 324 0.62
24 145 0.28
25 23 0.04
26 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.40
Consensus pattern (23 bp):
TATACATGCTGTCCAATTTTGTA
Found at i:47176856 original size:93 final size:93
Alignment explanation
Indices: 47176736--47177438 Score: 1147
Period size: 93 Copynumber: 7.5 Consensus size: 93
47176726 TAATGGTCTA
*
47176736 AAATTGGTTTATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
*
47176801 TATCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* * *
47176829 AAATTGCTACATATATGCTGCCTAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
* *
47176894 TGTCCAATTTTGTGTATAAGTGTTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
47176922 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
*
47176987 TGTCCAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
47177015 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
47177080 TGTCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* * * * *
47177108 AATTTGCTACATATATGCTGTCCAATTTTGGTGAATAAATGCTATCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
**
47177173 CATCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* *
47177201 AAATTGATATATATATATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACAT
1 AAATTG--GTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACAT
47177266 GCTGTCAAATTTTGTGTATAAGTGCTGTCC
64 GCTGTCAAATTTTGTGTATAAGTGCTGTCC
47177296 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
* *
47177361 TTTCAAATTTTGTGTATAAGTGATGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* * * * *
47177389 AAATTGATATATACATGCTGCTCAATTTCTGATGTATAAGA-GCTGTCCAA
1 AAATTGGTATATATATGCTGCCCAATTT-TGGTGAATAA-ATGCTGTCCAA
47177439 ACAGGGTAGA
Statistics
Matches: 570, Mismatches: 36, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
93 466 0.82
94 17 0.03
95 87 0.15
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (93 bp):
AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
TGTCAAATTTTGTGTATAAGTGCTGTCC
Found at i:47177537 original size:281 final size:280
Alignment explanation
Indices: 47176736--47177449 Score: 846
Period size: 281 Copynumber: 2.5 Consensus size: 280
47176726 TAATGGTCTA
*
47176736 AAATTGGTTTATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
* * * * *
47176801 TATCAAATTTTGTGTATAAGTGCTGTCCAAATTGCTACATATATGCTG-CCTAATTTTGGTGAAT
66 TGTCAAATTTTGTGTATAAGTGATGTCCAAATTGATACATACATGCTGTCC-AATTTTGATGAAT
* **** * ** * * *** *
47176865 AAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTGTATAAGTGTTGTCCAAATTG--
130 AAATGCTATCCAACAGGGTAGATACATGCCATCAAATTATGTGTATAAGTGAAATCCAAAATGAT
* * * * * * *
47176928 GTATATATATGCTGCCCAATTTTGGTGAATAAATGCT-GTCCAATTTTGTATATACATGCTGTCC
195 ATATATATATGCTGACAAATGTT-GTGAATAAATG-TACTCAAATTTTGTATATACATGCTGTCA
47176992 AATTTTGTGTATAAGTGCTGTCC
258 AATTTTGTGTATAAGTGCTGTCC
47177015 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
* * * * *
47177080 TGTCAAATTTTGTGTATAAGTGCTGTCCAATTTGCTACATATATGCTGTCCAATTTTGGTGAATA
66 TGTCAAATTTTGTGTATAAGTGATGTCCAAATTGATACATACATGCTGTCCAATTTTGATGAATA
**** * * *** *
47177145 AATGCTATCCAATTTTGTATATACATGCCATCAAATTTTGTGTATAAGTGCTGTCCAAATTGATA
131 AATGCTATCCAACAGGGTAGATACATGCCATCAAATTATGTGTATAAGTGAAATCCAAAATGATA
* * * ** *
47177210 TATATATATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACATGCTGTCAAA
196 TATATATATGCTGACAAATGTT-GTGAATAAATGTACTCAAATTTTGTATATACATGCTGTCAAA
47177275 TTTTGTGTATAAGTGCTGTCC
260 TTTTGTGTATAAGTGCTGTCC
47177296 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
* * *
47177361 TTTCAAATTTTGTGTATAAGTGATGTCCAAATTGATATATACATGCTG-CTCAATTTCTGATGTA
66 TGTCAAATTTTGTGTATAAGTGATGTCCAAATTGATACATACATGCTGTC-CAATTT-TGATGAA
*
47177425 TAAGA-GCTGTCCAAACAGGGTAGAT
129 TAA-ATGCTATCC-AACAGGGTAGAT
47177450 TACCTATGTT
Statistics
Matches: 403, Mismatches: 24, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
279 181 0.45
280 4 0.01
281 196 0.49
282 14 0.03
283 8 0.02
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (280 bp):
AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
TGTCAAATTTTGTGTATAAGTGATGTCCAAATTGATACATACATGCTGTCCAATTTTGATGAATA
AATGCTATCCAACAGGGTAGATACATGCCATCAAATTATGTGTATAAGTGAAATCCAAAATGATA
TATATATATGCTGACAAATGTTGTGAATAAATGTACTCAAATTTTGTATATACATGCTGTCAAAT
TTTGTGTATAAGTGCTGTCC
Found at i:47180189 original size:3 final size:3
Alignment explanation
Indices: 47180129--47180170 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
47180119 TAATCTAGTC
47180129 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
47180171 CATTATCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:47180580 original size:18 final size:18
Alignment explanation
Indices: 47180559--47180593 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47180549 TACACCTATA
*
47180559 TATATATGTACACATTTT
1 TATATATATACACATTTT
*
47180577 TATATATATACATATTT
1 TATATATATACACATTT
47180594 CTTTCTTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
TATATATATACACATTTT
Found at i:47180680 original size:24 final size:24
Alignment explanation
Indices: 47180623--47180682 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
47180613 AAAATATACT
*
47180623 TTATATATA-ATTTGTAATTTATG
1 TTATATACATATTTGTAATTTATG
* *
47180646 TATACACACATATTT-TAATTTATAG
1 T-TATATACATATTTGTAATTTAT-G
47180671 TTATATACATAT
1 TTATATACATAT
47180683 ATATCTCTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 22 0.76
25 6 0.21
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (24 bp):
TTATATACATATTTGTAATTTATG
Found at i:47197868 original size:19 final size:20
Alignment explanation
Indices: 47197841--47197880 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
47197831 ATTGTAAAGA
*
47197841 AATATTAAAATATTAAAATT
1 AATATTAAAATATAAAAATT
*
47197861 AATA-TAAACTATAAAAATT
1 AATATTAAAATATAAAAATT
47197880 A
1 A
47197881 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
AATATTAAAATATAAAAATT
Found at i:47198304 original size:9 final size:9
Alignment explanation
Indices: 47198292--47198443 Score: 55
Period size: 10 Copynumber: 16.0 Consensus size: 9
47198282 TTTATGACTT
47198292 TTTTTATAA
1 TTTTTATAA
*
47198301 TTTTCATAA
1 TTTTTATAA
*
47198310 GTTTATATCAA
1 -TTTTTAT-AA
*
47198321 -TTTTATTCA
1 TTTTTA-TAA
47198330 TTTTTATAGAA
1 TTTTTAT--AA
* *
47198341 TTTTAATACG
1 TTTTTATA-A
47198351 TTTTTATAAA
1 TTTTTAT-AA
*
47198361 ATTTTA-AA
1 TTTTTATAA
47198369 TATTTTGA-ATA
1 T-TTTT-ATA-A
47198380 TGTTTTATTAA
1 T-TTTTA-TAA
*
47198391 -TTTTAT-T
1 TTTTTATAA
47198398 TTTTTATAA
1 TTTTTATAA
47198407 TTTTTTATAA
1 -TTTTTATAA
* *
47198417 TTTATTAGAT
1 TTT-TTATAA
47198427 TTTTTAT-A
1 TTTTTATAA
47198435 TTTTTATAA
1 TTTTTATAA
47198444 AATTATGTCT
Statistics
Matches: 106, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
8 16 0.15
9 31 0.29
10 41 0.39
11 17 0.16
12 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:47201444 original size:127 final size:127
Alignment explanation
Indices: 47201218--47201479 Score: 461
Period size: 127 Copynumber: 2.1 Consensus size: 127
47201208 TTGTGTATGG
* *
47201218 CATGACTTTACTAGCAACAGTGGAATTCATAGCTCAATTAGACCATGCGTATGTAACTCACGTGT
1 CATGACTTTACTAGAAACAGTGGAATTCATAGCTCAATTAGACCATGCGTATGTAACTCACGTGC
* *
47201283 TTTGAAATAAGTGGAGGCTTATGCTTTAAAGATGATCAAGCCAATAGTCGGTACGTTGGGTA
66 TTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAGCCAATAGTCGGTACGCTGGGTA
*
47201345 CATGACTTTACTAGAAACAGTGGAATTCATAGCTCAATTAGACCATGCGTATGTAACTCATGTGC
1 CATGACTTTACTAGAAACAGTGGAATTCATAGCTCAATTAGACCATGCGTATGTAACTCACGTGC
**
47201410 TTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAGCTGATAGTCGGTACGCTGGGTA
66 TTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAGCCAATAGTCGGTACGCTGGGTA
47201472 CATGACTT
1 CATGACTT
47201480 GTGTATGGTG
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (127 bp):
CATGACTTTACTAGAAACAGTGGAATTCATAGCTCAATTAGACCATGCGTATGTAACTCACGTGC
TTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAGCCAATAGTCGGTACGCTGGGTA
Found at i:47202595 original size:20 final size:19
Alignment explanation
Indices: 47202570--47202662 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 19
47202560 ATTCCAAAAA
47202570 TAATATTATTTTAATAGATT
1 TAATATTATTTTAATA-ATT
**
47202590 TAATATTAAATT-A-AATT
1 TAATATTATTTTAATAATT
*
47202607 TAATACTTATATTAATAGTATT
1 TAATA-TTATTTTAATA--ATT
*
47202629 T--TATTAATTTAAT-ATT
1 TAATATTATTTTAATAATT
47202645 TAAGTTATTATTTTAATA
1 TAA--TATTATTTTAATA
47202663 TTAAATTTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
16 4 0.07
17 8 0.14
18 7 0.12
19 10 0.18
20 24 0.42
22 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATATTATTTTAATAATT
Found at i:47202729 original size:62 final size:59
Alignment explanation
Indices: 47202656--47202772 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
47202646 AAGTTATTAT
* * *
47202656 TTTAATATTAAATTTAATTTAATGTCTATCTTGTAGATAAATATTCTATTAATTTAATAAGA
1 TTTAATATTAAATTTAATCTAATATCTATC-T-T-GATAAATATTATATTAATTTAATAAGA
*
47202718 TTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
1 TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAAT
47202773 GTTAAAGTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.43
60 1 0.02
61 1 0.02
62 27 0.53
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
TTTAATATTAAATTTAATCTAATATCTATCTTGATAAATATTATATTAATTTAATAAGA
Found at i:47202929 original size:25 final size:25
Alignment explanation
Indices: 47202886--47202933 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
47202876 TTGTAAAGAA
*
47202886 AAAATTCTCTGAAGATATTATTTTTG
1 AAAATTCTCTAAAGATATT-TTTTTG
47202912 AAAATT-TCTAAAGATATTTTTT
1 AAAATTCTCTAAAGATATTTTTT
47202934 ATTTACAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 11 0.52
26 6 0.29
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (25 bp):
AAAATTCTCTAAAGATATTTTTTTG
Found at i:47203502 original size:27 final size:28
Alignment explanation
Indices: 47203451--47203532 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 28
47203441 TCACGTTCTG
* * *
47203451 GCGGACTTACCTCATGTTTATTGTCTCA
1 GCGGACTTACCTCATGTTCACTGTCCCA
*
47203479 GCGGACTTACC-CATGTTCACTGTCCCG
1 GCGGACTTACCTCATGTTCACTGTCCCA
* * *
47203506 GAGGACTTACCT-GTGTTTACTGTCCCA
1 GCGGACTTACCTCATGTTCACTGTCCCA
47203533 ACGAACTGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
27 34 0.76
28 11 0.24
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (28 bp):
GCGGACTTACCTCATGTTCACTGTCCCA
Found at i:47207993 original size:33 final size:33
Alignment explanation
Indices: 47207949--47208032 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
47207939 GCAGACTGCC
* *
47207949 TGTTCTATGTTTATTGTCCCACCGAACTTTCTT
1 TGTTCTATGTTTATTGTCCCAACGAACTATCTT
* * * *
47207982 TGTTCTGTGTTTACTATCCCAACGGACTATCTT
1 TGTTCTATGTTTATTGTCCCAACGAACTATCTT
*
47208015 TGTTCTATGTTAATTGTC
1 TGTTCTATGTTTATTGTC
47208033 ACAGTGGGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48
Consensus pattern (33 bp):
TGTTCTATGTTTATTGTCCCAACGAACTATCTT
Found at i:47208194 original size:58 final size:58
Alignment explanation
Indices: 47208099--47208244 Score: 157
Period size: 58 Copynumber: 2.5 Consensus size: 58
47208089 ATACCTGGCT
* * ** * ** *
47208099 ACCATAGCGTCTTTCATCTATGGTCTTACACCGTATACCTTATACTTTGTACTATACA
1 ACCATGGCGTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACA
* * *
47208157 ACCATGGCGTCTTTCATCCATGGTCTTATGCCATATACCTTTTACCATGTACCATGCT
1 ACCATGGCGTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACA
** * *
47208215 ACCATGATGTCTTTCATCCACGATCTTATG
1 ACCATGGCGTCTTTCATCCATGGTCTTATG
47208245 TTACCTACCT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 73 1.00
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.37
Consensus pattern (58 bp):
ACCATGGCGTCTTTCATCCATGGTCTTATGCCATATACCTTATACCATGTACCATACA
Found at i:47213418 original size:25 final size:25
Alignment explanation
Indices: 47213382--47213431 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
47213372 TCATTCATAT
47213382 CTATGTCACTAAATGTATTTAAATA
1 CTATGTCACTAAATGTATTTAAATA
*
47213407 CTATGTCCCTAAATGTATTTAAATA
1 CTATGTCACTAAATGTATTTAAATA
47213432 TGTAGTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (25 bp):
CTATGTCACTAAATGTATTTAAATA
Found at i:47221622 original size:16 final size:16
Alignment explanation
Indices: 47221601--47221632 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47221591 TAACTTATTT
47221601 CATTTCTAGTCAAAAC
1 CATTTCTAGTCAAAAC
*
47221617 CATTTCTAGTCCAAAC
1 CATTTCTAGTCAAAAC
47221633 TTTATAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.06, T:0.31
Consensus pattern (16 bp):
CATTTCTAGTCAAAAC
Found at i:47225441 original size:51 final size:51
Alignment explanation
Indices: 47225356--47225541 Score: 216
Period size: 51 Copynumber: 3.6 Consensus size: 51
47225346 GCTATCCGGT
*
47225356 ACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATA-CCATCCAGC
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAA-AGCCATCCAGC
* * * * *
47225407 ACACGTAGGAGCCTGCACATAGTACTACACATGTGACCAAAGCTATCCAGT
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAAGCCATCCAGC
* * *
47225458 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCATAA-CTATCTTA-T
1 ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCA-AAGCCATC-CAGC
* * *
47225509 ACTCATAGTAGCCTACACATAGTACTACACATG
1 ACACATAGTAGCCTGCACTTAGTACTACACATG
47225542 AGTTCTCATG
Statistics
Matches: 119, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
50 1 0.01
51 115 0.97
52 3 0.03
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (51 bp):
ACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAAGCCATCCAGC
Found at i:47225522 original size:102 final size:102
Alignment explanation
Indices: 47225346--47225541 Score: 279
Period size: 102 Copynumber: 1.9 Consensus size: 102
47225336 TATGATCAAT
*
47225346 GCTATCCGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATCCAGCACAC
1 GCTATCCAGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATCCAGCACAC
* *
47225411 GTAGGAGCCTGCACATAGTACTACACATGTGACCAAA
66 ATAGGAGCCTACACATAGTACTACACATGTGACCAAA
* * * *
47225448 GCTATCCAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-ATAACTATCTTA-TAC
1 GCTATCCAGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAAT-ACCATC-CAGCAC
* *
47225511 TCATAGTAGCCTACACATAGTACTACACATG
64 ACATAGGAGCCTACACATAGTACTACACATG
47225542 AGTTCTCATG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
101 2 0.02
102 80 0.96
103 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (102 bp):
GCTATCCAGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCAATACCATCCAGCACAC
ATAGGAGCCTACACATAGTACTACACATGTGACCAAA
Found at i:47227745 original size:24 final size:24
Alignment explanation
Indices: 47227692--47227737 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
47227682 TCTTTCTATA
* *
47227692 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAGCATTTATTAGAATAAT
47227716 ATATTTAGCATTTATTAGAATA
1 ATATTTAGCATTTATTAGAATA
47227738 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATTAGAATAAT
Found at i:47229744 original size:50 final size:50
Alignment explanation
Indices: 47229620--47229860 Score: 241
Period size: 50 Copynumber: 4.8 Consensus size: 50
47229610 GAATATAACA
* * * * ** * * * *
47229620 TGCCAAAGCTATGTCCTAGACATAGTCTTACATGGGATGTTTCTTGTA-C
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * * * ** *
47229669 TGCCAATGCGATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * ** * *
47229719 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCGCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
*
47229769 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
*
47229819 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
47229861 TTACTCAAAT
Statistics
Matches: 159, Mismatches: 32, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
49 36 0.23
50 123 0.77
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:47231984 original size:24 final size:24
Alignment explanation
Indices: 47231956--47232007 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
47231946 TTTCTAGAAG
* *
47231956 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
47231980 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
47232004 ATTT
1 ATTT
47232008 GACCTACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:47239014 original size:18 final size:19
Alignment explanation
Indices: 47238979--47239016 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47238969 AACTTTTATA
47238979 TAAAAATTTTCTATTAATT
1 TAAAAATTTTCTATTAATT
* *
47238998 TAAAATTTTTTTA-TAATT
1 TAAAAATTTTCTATTAATT
47239016 T
1 T
47239017 TAGGGTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TAAAAATTTTCTATTAATT
Found at i:47240351 original size:15 final size:16
Alignment explanation
Indices: 47240333--47240366 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
47240323 CTCCTTTTTT
*
47240333 TTTTC-TTCTTTTTCC
1 TTTTCTTTCTTTCTCC
47240348 TTTTCTTTCTTTCTCC
1 TTTTCTTTCTTTCTCC
47240364 TTT
1 TTT
47240367 CCTCCTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCTTTCTTTCTCC
Found at i:47240367 original size:21 final size:20
Alignment explanation
Indices: 47240305--47240369 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 20
47240295 TTTTACCCTT
47240305 TTTTATTTCTTTC-CCATTCTCC
1 TTTT-TTTCTTTCTCC-TT-TCC
*
47240327 TTTTTTT-TTTCTTCTTTTTCC
1 TTTTTTTCTTTC-TC-CTTTCC
47240348 TTTTCTTTCTTTCTCCTTTCC
1 TTTT-TTTCTTTCTCCTTTCC
47240369 T
1 T
47240370 CCTACAAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
22 12 0.33
23 4 0.11
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTTTCTTTCTCCTTTCC
Found at i:47240969 original size:24 final size:25
Alignment explanation
Indices: 47240927--47240980 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
47240917 ATATTTACAA
* * *
47240927 TTTTTTAAATTAGATAAATATGTCG
1 TTTTTTAAATTAGACAAATAGGCCG
*
47240952 TTTTTT-AATTAGCCAAATAGGCCG
1 TTTTTTAAATTAGACAAATAGGCCG
47240976 TTTTT
1 TTTTT
47240981 GGAGAGAGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.48
Consensus pattern (25 bp):
TTTTTTAAATTAGACAAATAGGCCG
Found at i:47243542 original size:41 final size:41
Alignment explanation
Indices: 47243380--47243530 Score: 223
Period size: 41 Copynumber: 3.7 Consensus size: 41
47243370 TTAATTAAAA
* * ** *
47243380 CAGATTCAACGGCACATAGCCTGCTAGACTTATAGCCTGATT
1 CAGA-TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
47243422 CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
47243463 CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
1 CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
*
47243504 CAGATCACCGGCA-TTAAGCCTGCTAGG
1 CAGATCACCGGCACGT-AGCCTGCTAGG
47243531 CGCTTAGCCT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
40 1 0.01
41 97 0.95
42 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAGATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATT
Found at i:47244165 original size:2 final size:2
Alignment explanation
Indices: 47244158--47244212 Score: 51
Period size: 2 Copynumber: 28.0 Consensus size: 2
47244148 TTCGATAACT
* * *
47244158 TA TA TA TA TA TA TA TA TG TA TA TA TA T- TC TA GCA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
47244199 TA TA CA TA TA TA TA
1 TA TA TA TA TA TA TA
47244213 CATGCTTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
1 2 0.05
2 40 0.93
3 1 0.02
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:47246674 original size:40 final size:40
Alignment explanation
Indices: 47246598--47246677 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
47246588 ATATCAGGAA
** * *
47246598 TTAGTCATAAATCTATCATATCATTTATTATGTGAGCCCT
1 TTAGTCATAAATCTATCATATCATCCAATATATGAGCCCT
*
47246638 TTAGTCATAAATCTATCATATCGTCCAATATATGAGCCCT
1 TTAGTCATAAATCTATCATATCATCCAATATATGAGCCCT
47246678 CGAGGCCCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (40 bp):
TTAGTCATAAATCTATCATATCATCCAATATATGAGCCCT
Found at i:47248020 original size:24 final size:26
Alignment explanation
Indices: 47247991--47248053 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 26
47247981 GGGAAACTCA
47247991 CAAAGAGCCT-A-TAACAGGTAGCTC
1 CAAAGAGCCTAATTAACAGGTAGCTC
* *
47248015 CAAAGA--CTAATTAACGGGTAGCTT
1 CAAAGAGCCTAATTAACAGGTAGCTC
47248039 CAAAGAG-C-AATTAAC
1 CAAAGAGCCTAATTAAC
47248054 GAATAGCTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 2 0.06
23 1 0.03
24 30 0.88
25 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (26 bp):
CAAAGAGCCTAATTAACAGGTAGCTC
Found at i:47248054 original size:24 final size:24
Alignment explanation
Indices: 47248002--47248084 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
47247992 AAAGAGCCTA
* *
47248002 TAACAGGTAGCTCCAAAGA-CTAAT
1 TAACGGGTAGCTTCAAAGAGC-AAT
47248026 TAACGGGTAGCTTCAAAGAGCAAT
1 TAACGGGTAGCTTCAAAGAGCAAT
** *
47248050 TAACGAATAGC-TCTGAAGAGCAAT
1 TAACGGGTAGCTTC-AAAGAGCAAT
47248074 TAACGGGTAGC
1 TAACGGGTAGC
47248085 ACTTGATAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.04
24 47 0.94
25 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (24 bp):
TAACGGGTAGCTTCAAAGAGCAAT
Found at i:47248181 original size:26 final size:26
Alignment explanation
Indices: 47248127--47248187 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
47248117 AGCACTAACA
* *
47248127 GGAATCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCTATAATCG
*
47248153 GGAAGCTCACGAAGAGCCATATAAT-G
1 GGAAGCTCACAAAGAGCC-TATAATCG
*
47248179 GGACGCTCA
1 GGAAGCTCA
47248188 TAAGAGCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAATCG
Found at i:47255887 original size:707 final size:709
Alignment explanation
Indices: 47254507--47255906 Score: 1913
Period size: 707 Copynumber: 2.0 Consensus size: 709
47254497 TATGGGTGAC
*
47254507 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTCTGTTTGTTAAGACATTGTTTTTTA
1 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTCTATTTGTTAAGACATTGTTTTTTA
* * *
47254572 TGAAACCTTGTGAAAATTCATGCTTTGGATATTAAATATTATTTGTTCTTTAATAAAGTTACTAT
66 TGAAACCTAGTGAAAATTCATGCTTTGGATATTAAATATTATATGATCTTTAATAAAGTTACTAT
* * * *
47254637 ACTTGAACTTATGCGCCATAGGATTTAAATATTATAATTACTCCAATAATGGTTTAATTCAAACA
131 ACTTGAACTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAACA
*
47254702 TTGAAGTTTTACAAAGCTATTGTCAGAACTGATTTTTTCAATTTAAGATGATTTCTAAGTAGTGA
196 TTGAAGTTTTACAAAGCTATTGCCAGAACTGA-TTTTTCAATTTAAGATGATTTCTAAGTAGTGA
* * * ** *
47254767 CACATTATACTCAAATTCTTTCTAAAGGATTGGGTTTGGCGTGTTACAGGAAACACGCCCTGATT
260 CACATCATACTCAAATTCTTTCTAAAGGATCGAGTTTGGCGTGTTACAGGAAACAAACCCTAATT
* *
47254832 TCTTCCAACACTCGACTTTATGTCTCTTTCCATACAATTCACCACTCGATATATCAACATCTCTA
325 TCTTCCAACACTCGACTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCTCTA
* * * * * * * * *
47254897 ACTGAGCCTCTCACACTACCTACAGACATTGTTGACTGTCGATCTCGGCCTCTCTCGGATCTAGA
390 ACTGAGCCTCTCACACAACCTAAAAACACTATCGACTATCGATATCGGCCTCTCTCAGATCTAGA
** ** * *
47254962 AAATCTCAGAGCTAATCTCCAATGCTCTGGAGACTCTCTTGCCCGTTTAGGCAACATATGAAAGC
455 AAATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCTCTAACCCATTTAGGCAACAAATGAAAGC
* *
47255027 TAGAAGTCTAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGCCCATCGCT
520 TAAAAGTCTAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACCATCGCT
* * * *
47255092 TGCTTGACCATCTTTACCCGTTCAAAGAGGTCAGTGAACTATTTTATTCTATGTAAAACCAACTG
585 TACTCGACCATCTTTACCCATTCAAAGAGGTCAGTAAACTATTTTATTCTATGTAAAACCAACTG
** **
47255157 AACTATGAGCTCATCGTGCAAACCCTGAAGAAATCATTTACAAAACTTCTATTTGTACAT
650 AACTATGAGCTCATCACGCAAACCCCAAAGAAATCATTTACAAAACTTCTATTTGTACAT
* *
47255217 ATCTAAGTGTA-TTTTTAGAAGAATTTGTACAAAGAACTTCTATTTGTTAAGACTTTG-TTTTTA
1 ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTCTATTTGTTAAGACATTGTTTTTTA
* *
47255280 TGAAACCTGAGTGAAAATTCATGTTTTGGATATTAAATATTATATGATGTTTAATAAAGTTACTA
66 TGAAACCT-AGTGAAAATTCATGCTTTGGATATTAAATATTATATGATCTTTAATAAAGTTACTA
* * *
47255345 TACTT-AAGTTTATACACCATAAGATTTTACCATTATAATTACTCCAATAATGGTTTAATTCAAA
130 TACTTGAA-CTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAA
* *
47255409 CATTGAAGTTTTACAAAGTTATTGCCAGAACTGA-TTTTGAATTTAAGATGATTTCTAAGTAGTG
194 CATTGAAGTTTTACAAAGCTATTGCCAGAACTGATTTTTCAATTTAAGATGATTTCTAAGTAGTG
* **
47255473 ACACATCATGCTCGGATTCTTTCTAAAGGATCGAGTTTGGCGTGTTACA-GAAACAAA-CCTCAA
259 ACACATCATACTCAAATTCTTTCTAAAGGATCGAGTTTGGCGTGTTACAGGAAACAAACCCT-AA
* * * * *
47255536 TTTTCTTCTAACACTCGCCTTTATGTCTTTTTCCACACAATTCATAACTCGGTATATCAACATCT
323 -TTTCTTCCAACACTCGACTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCT
* * *
47255601 CTAACTTG-GCCTTTCACACAACCTAAAAACACTATCGACTATTGATATCGGCTCTCTCTTAGAT
387 CTAAC-TGAGCCTCTCACACAACCTAAAAACACTATCGACTATCGATATCGGC-CTCTCTCAGAT
* * * * ** *
47255665 CTGGTAGAT-TCGGAGCTGGTCTCCTATGCTCTCAAGACTCTCTAACCCATTTAGGCAACAAATG
450 CTAGAAAATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCTCTAACCCATTTAGGCAACAAATG
* * * **
47255729 AGAGCTAAAAGTGC-CGACTCATTTCTCAAATGCTCTAGAAGGTTCCGGTTTCTTGTCTAGGACC
515 AAAGCTAAAAGT-CTAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACC
* ** * *
47255793 ATCGCTTACTCGATCATCTTTGTCCATTCAGTA-AGGTCA-TCAAACTATTTTATTCTATGTGAA
579 ATCGCTTACTCGACCATCTTTACCCATTCA-AAGAGGTCAGT-AAACTATTTTATTCTATGTAAA
*
47255856 ACCAACTGAACTATGAGCTCGTCACGCAAACCCCAAAGAAATCATTTACAA
642 ACCAACTGAACTATGAGCTCATCACGCAAACCCCAAAGAAATCATTTACAA
47255907 CTTTCTTCTT
Statistics
Matches: 601, Mismatches: 80, Indels: 21
0.86 0.11 0.03
Matches are distributed among these distances:
705 3 0.00
706 8 0.01
707 364 0.61
708 35 0.06
709 180 0.30
710 11 0.02
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (709 bp):
ATCTAAGTGTACTTTTTAGAAAAATTTGTACAAAGAACTTCTATTTGTTAAGACATTGTTTTTTA
TGAAACCTAGTGAAAATTCATGCTTTGGATATTAAATATTATATGATCTTTAATAAAGTTACTAT
ACTTGAACTTATACACCATAAGATTTAAACATTATAATTACTCCAATAATGGTTTAATTCAAACA
TTGAAGTTTTACAAAGCTATTGCCAGAACTGATTTTTCAATTTAAGATGATTTCTAAGTAGTGAC
ACATCATACTCAAATTCTTTCTAAAGGATCGAGTTTGGCGTGTTACAGGAAACAAACCCTAATTT
CTTCCAACACTCGACTTTATGTCTCTTTCCACACAATTCACAACTCGATATATCAACATCTCTAA
CTGAGCCTCTCACACAACCTAAAAACACTATCGACTATCGATATCGGCCTCTCTCAGATCTAGAA
AATCTCAGAGCTAATCTCCAATGCTCTCAAGACTCTCTAACCCATTTAGGCAACAAATGAAAGCT
AAAAGTCTAGACTCATTTCTCAAATGCTCCAGAAGGTTCCAATTTCTTGTCTAGGACCATCGCTT
ACTCGACCATCTTTACCCATTCAAAGAGGTCAGTAAACTATTTTATTCTATGTAAAACCAACTGA
ACTATGAGCTCATCACGCAAACCCCAAAGAAATCATTTACAAAACTTCTATTTGTACAT
Found at i:47259282 original size:20 final size:19
Alignment explanation
Indices: 47259251--47259290 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
47259241 TAATTAGTTT
*
47259251 TAAATTAAACTTAATTTAA
1 TAAATTAAACTTAAATTAA
47259270 TAAATTAAAACTTAAATTAA
1 TAAATT-AAACTTAAATTAA
47259290 T
1 T
47259291 TAAGCTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATTAAACTTAAATTAA
Found at i:47260322 original size:26 final size:28
Alignment explanation
Indices: 47260270--47260323 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 28
47260260 TAAAAGCTAT
*
47260270 AAATATTATTAAATTTTAATTAAAAATTC
1 AAATATTA-TAAAATTTAATTAAAAATTC
*
47260299 AAATATTA-AAAATTT-ATTAGAAATT
1 AAATATTATAAAATTTAATTAAAAATT
47260324 AGAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.39
27 6 0.26
29 8 0.35
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (28 bp):
AAATATTATAAAATTTAATTAAAAATTC
Found at i:47260345 original size:9 final size:8
Alignment explanation
Indices: 47260327--47260414 Score: 56
Period size: 9 Copynumber: 10.6 Consensus size: 8
47260317 AGAAATTAGA
47260327 AAAAATAT
1 AAAAATAT
47260335 AAAAATCAT
1 AAAAAT-AT
47260344 AAAAATAT
1 AAAAATAT
*
47260352 --ATATA-
1 AAAAATAT
*
47260357 AAAAATTGT
1 AAAAA-TAT
*
47260366 AAAATTTTAT
1 AAAA--ATAT
*
47260376 AAAAATTGT
1 AAAAA-TAT
47260385 AAAAATAT
1 AAAAATAT
47260393 AAAAAATAT
1 -AAAAATAT
*
47260402 AGAAATAT
1 AAAAATAT
47260410 AAAAA
1 AAAAA
47260415 AATTATAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
6 4 0.07
7 2 0.03
8 22 0.36
9 27 0.44
10 6 0.10
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (8 bp):
AAAAATAT
Found at i:47260381 original size:19 final size:18
Alignment explanation
Indices: 47260319--47260425 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 18
47260309 AATTTATTAG
* *
47260319 AAATTAGAAAAAATATAA
1 AAATTATAAAATATATAA
*
47260337 AAATCATAAAAATATATATAAA
1 AAAT--TATAAA-ATATAT-AA
* *
47260359 AAATTGTAAAATTTTATAA
1 AAATTATAAAA-TATATAA
*
47260378 AAATTGTAAAA-ATATAA
1 AAATTATAAAATATATAA
* *
47260395 AAAATATAGAAATATAAAA
1 AAATTATA-AAATATATAA
47260414 AAATTATAAAAT
1 AAATTATAAAAT
47260426 TTTATAAAGT
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
17 11 0.15
18 11 0.15
19 26 0.36
20 13 0.18
21 5 0.07
22 6 0.08
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (18 bp):
AAATTATAAAATATATAA
Found at i:47260415 original size:17 final size:17
Alignment explanation
Indices: 47260326--47260415 Score: 64
Period size: 17 Copynumber: 5.4 Consensus size: 17
47260316 TAGAAATTAG
47260326 AAAAAATATAAAAATCAT
1 AAAAAATATAAAAAT-AT
47260344 -AAAAATAT----ATAT
1 AAAAAATATAAAAATAT
* *
47260356 AAAAAATTGTAAAATTTTAT
1 AAAAAA-TATAAAA--ATAT
* *
47260376 AAAAATTGTAAAAATAT
1 AAAAAATATAAAAATAT
*
47260393 AAAAAATATAGAAATAT
1 AAAAAATATAAAAATAT
47260410 AAAAAA
1 AAAAAA
47260416 ATTATAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
12 2 0.04
13 7 0.12
14 2 0.04
17 31 0.54
19 7 0.12
20 8 0.14
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAAAATATAAAAATAT
Found at i:47260463 original size:21 final size:21
Alignment explanation
Indices: 47260421--47260465 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
47260411 AAAAAATTAT
* *
47260421 AAAATTTTATAAAGTCGTAAG
1 AAAATTATATAAAATCGTAAG
47260442 AAAATTATATAAAAT-GTAAAG
1 AAAATTATATAAAATCGT-AAG
47260463 AAA
1 AAA
47260466 TATAAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAATTATATAAAATCGTAAG
Found at i:47260924 original size:90 final size:90
Alignment explanation
Indices: 47260757--47260955 Score: 233
Period size: 90 Copynumber: 2.2 Consensus size: 90
47260747 TTTTAATAAG
* * * * **
47260757 AGCAAGGGCTTAATTACTTTTTTGAAATATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAA
1 AGCAAGGGCTTAATT-GTTTTTTAAAAAAGTTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAA
* * * *
47260822 ATACCTAGTTGAGT-TAAGAAGAAAA
65 ATACCTAATTGAGTGCAAAAAAAAAA
47260847 AGCAAGGGCTTAATTGTTTTTTAAAAGAAGTTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAA
1 AGCAAGGGCTTAATTGTTTTTTAAAA-AAGTTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAA
* *
47260912 GT-GCTCAATTGAGTGCAAAAAAAAAA
65 ATACCT-AATTGAGTGCAAAAAAAAAA
*
47260938 AG-AGGGGCTTAATTGTTT
1 AGCAAGGGCTTAATTGTTT
47260956 CTTTTTTTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 11 0.12
90 72 0.77
91 10 0.11
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (90 bp):
AGCAAGGGCTTAATTGTTTTTTAAAAAAGTTTGAGGACCTTTTTGATGCATTTTGAAAGTTCAAA
TACCTAATTGAGTGCAAAAAAAAAA
Found at i:47265825 original size:45 final size:45
Alignment explanation
Indices: 47265761--47265852 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
47265751 TAGATACTCG
* *
47265761 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCA
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCA
* *
47265806 GTGGAATCAGCACATAGCAACCACTTTACTAATCAATGATGTTCA
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCA
47265851 GT
1 GT
47265853 TCACATAGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCA
Found at i:47265916 original size:51 final size:50
Alignment explanation
Indices: 47265858--47266044 Score: 187
Period size: 51 Copynumber: 3.7 Consensus size: 50
47265848 TCAGTTCACA
*
47265858 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATTCGATACACG
* * * * * ***
47265909 TAGTAGCCTGCACATGGTACTACATACGTGATCGAAACTATTCGATACGTA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATTCGATACACG
* * * * * * *
47265960 TAGTAGTCTGCACATAGTACAACAAATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATT-CGATACACG
*
47266010 TAGTAGCCTACACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
47266045 CACTTTCACT
Statistics
Matches: 104, Mismatches: 29, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
49 4 0.04
50 33 0.32
51 65 0.62
52 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGATACACG
Found at i:47266033 original size:101 final size:101
Alignment explanation
Indices: 47265857--47266040 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 101
47265847 TTCAGTTCAC
* * * *
47265857 ATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCGATACACGTAGTAGCCTGCAC
1 ATAGTAGCCTGCACATAGTACAACAAATGCGACCA-TACCATTCGATACACGTAGTAGCCTACAC
* *
47265922 ATGGTACTACATACGTGATCGAAACTATTCGATACGT
65 ATAGTACTACACACGTGATCGAAACTATTCGATACGT
* * *
47265959 ATAGTAGTCTGCACATAGTACAACAAATGCGACC-TATCATTCCGGTACACGTAGTAGCCTACAC
1 ATAGTAGCCTGCACATAGTACAACAAATGCGACCATACCATT-CGATACACGTAGTAGCCTACAC
47266023 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
47266041 CCATCACTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 6 0.08
101 36 0.50
102 30 0.42
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (101 bp):
ATAGTAGCCTGCACATAGTACAACAAATGCGACCATACCATTCGATACACGTAGTAGCCTACACA
TAGTACTACACACGTGATCGAAACTATTCGATACGT
Found at i:47267844 original size:37 final size:37
Alignment explanation
Indices: 47267802--47267876 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
47267792 TTTGTCCTCG
47267802 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
1 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
47267839 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
1 AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
47267876 A
1 A
47267877 CCGTAGCACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32
Consensus pattern (37 bp):
AATTTACCCAAAATGAGTTATTGACTACCCTTGGTCA
Found at i:47272695 original size:50 final size:50
Alignment explanation
Indices: 47272627--47272811 Score: 257
Period size: 50 Copynumber: 3.7 Consensus size: 50
47272617 TCATCCGATA
* *
47272627 CACGTAGTATCCTACACATAGTACTACACACGTGATCAAGCTTTTCAGTT
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAGCTTTTCAGTT
47272677 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAGCTTTTCAGTT
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAGCTTTTCAGTT
* * * * *
47272727 CACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTATC-TATC-GATA
1 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCA--AGCTTTTCAG-TT
*
47272778 CACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 CACGTAGTAGCCTGCACATAGTACTACACACGTG
47272812 TTCATAGGTA
Statistics
Matches: 123, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
50 85 0.69
51 36 0.29
52 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAGCTTTTCAGTT
Found at i:47274754 original size:25 final size:26
Alignment explanation
Indices: 47274722--47274783 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
47274712 GAGCTACCCG
47274722 ATATGGCTCACTT-GGA-CTTCCCGAT
1 ATATGGCTCA-TTCGGAGCTTCCCGAT
*
47274747 ATATGGCT-ATTCGGAGCTTCCCGTT
1 ATATGGCTCATTCGGAGCTTCCCGAT
47274772 A-ATGGCTC-TTCG
1 ATATGGCTCATTCG
47274784 AAGTTACCCG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
23 2 0.06
24 14 0.42
25 17 0.52
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.34
Consensus pattern (26 bp):
ATATGGCTCATTCGGAGCTTCCCGAT
Found at i:47274783 original size:24 final size:24
Alignment explanation
Indices: 47274640--47274796 Score: 90
Period size: 26 Copynumber: 6.3 Consensus size: 24
47274630 CTTATAAGCG
*
47274640 TCCCGTTATATGGTTCTTCGTGAGCT
1 TCCCGTTA-ATGGCTCTTCG-GAGCT
** * *
47274666 TCTCAATTAAAGGCTCTTTGTGAGCT
1 TC-CCGTTAATGGCTCTTCG-GAGCT
*
47274692 TCCCGATTAATAGCTC-TCTGGAGCT
1 TCCCG-TTAATGGCTCTTC-GGAGCT
* *
47274717 ACCCGAT-ATGGCTCACTT-GGA-CT
1 TCCCGTTAATGGCT--CTTCGGAGCT
* *
47274740 TCCCGATATATGGCTATTCGGAGCT
1 TCCCGTTA-ATGGCTCTTCGGAGCT
*
47274765 TCCCGTTAATGGCTCTTCGAAG-T
1 TCCCGTTAATGGCTCTTCGGAGCT
47274788 TACCCGTTA
1 T-CCCGTTA
47274797 TTAGCTTGCA
Statistics
Matches: 102, Mismatches: 18, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
23 17 0.17
24 26 0.25
25 27 0.26
26 28 0.27
27 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (24 bp):
TCCCGTTAATGGCTCTTCGGAGCT
Found at i:47274886 original size:25 final size:26
Alignment explanation
Indices: 47274830--47274902 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 26
47274820 TATGGCTCTT
* **
47274830 ATGAGCTTCCCGTTATA-AAGCTCGG
1 ATGAGCTTCCCGTTATATGAGCTCAC
*
47274855 ATAAGCTTCCCGTTATATGA-CTCAC
1 ATGAGCTTCCCGTTATATGAGCTCAC
*
47274880 ATGAGCTTCCCATTATATG-GCTC
1 ATGAGCTTCCCGTTATATGAGCTC
47274903 GAGAGAGTGC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 39 0.98
26 1 0.03
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
ATGAGCTTCCCGTTATATGAGCTCAC
Found at i:47276724 original size:2 final size:2
Alignment explanation
Indices: 47276717--47276759 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
47276707 AATAACAAAA
*
47276717 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
47276759 A
1 A
47276760 AAATGTAGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:47277429 original size:8 final size:8
Alignment explanation
Indices: 47277387--47277430 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
47277377 TTTTAAAAGA
47277387 AAATTATTT
1 AAATT-TTT
47277396 -AATTTTT
1 AAATTTTT
*
47277403 AACTTTTT
1 AAATTTTT
*
47277411 AATTTTTT
1 AAATTTTT
47277419 AAATTTTT
1 AAATTTTT
47277427 AAAT
1 AAAT
47277431 GAAAAGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 3 0.10
8 28 0.90
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
AAATTTTT
Found at i:47280433 original size:14 final size:14
Alignment explanation
Indices: 47280414--47280452 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
47280404 TTGTTTTACT
*
47280414 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
47280428 GAAAATGATTTCTG
1 GAAAATGACTTCCG
47280442 GAAAATGACTT
1 GAAAATGACTT
47280453 ACTTTTTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:47281338 original size:19 final size:19
Alignment explanation
Indices: 47281302--47281340 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47281292 TATTATTAAT
**
47281302 ATATTTATAATTGTAATAA
1 ATATTTATAATTAAAATAA
*
47281321 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
47281340 A
1 A
47281341 ATTGAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:47281393 original size:29 final size:30
Alignment explanation
Indices: 47281328--47281393 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
47281318 TAAATATTTA
47281328 TTATTAAAATAAAATTGAAATATTAAATAAT
1 TTATTAAAATAAAATT-AAATATTAAATAAT
*
47281359 TTATTAAAATAATAATT-TATATT-AATAAT
1 TTATTAAAATAA-AATTAAATATTAAATAAT
47281388 TTATTA
1 TTATTA
47281394 TATGATTAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 12 0.36
32 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAAAATTAAATATTAAATAAT
Found at i:47281394 original size:16 final size:16
Alignment explanation
Indices: 47281347--47281396 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
47281337 TAAAATTGAA
47281347 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
* *
47281364 AAAATAATAA--T-TT
1 ATATTAATAATTTATT
47281377 ATATTAATAATTTATT
1 ATATTAATAATTTATT
47281393 ATAT
1 ATAT
47281397 GATTAGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
15 1 0.04
16 11 0.42
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:47288518 original size:34 final size:34
Alignment explanation
Indices: 47288451--47288528 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
47288441 GTTGGTTGCG
* * *
47288451 TGTTGAGTAAATGATGCGTCATCCTATGGCTGAA
1 TGTTGTGTAAATGATGAGTCATCCTATGACTGAA
*
47288485 TGTTGTGTAAATGATGAGTTACTCC-ATGACTGAA
1 TGTTGTGTAAATGATGAGTCA-TCCTATGACTGAA
*
47288519 TATTGATGTA
1 TGTTG-TGTA
47288529 TCATGATGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 30 0.81
35 7 0.19
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (34 bp):
TGTTGTGTAAATGATGAGTCATCCTATGACTGAA
Found at i:47291381 original size:23 final size:22
Alignment explanation
Indices: 47291346--47291390 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
47291336 ATATAAAAAC
47291346 AAAAAAACAAAAAAATTTCAAAG
1 AAAAAAAC-AAAAAATTTCAAAG
* * *
47291369 AAAAAGACCAAAAATTTGAAAG
1 AAAAAAACAAAAAATTTCAAAG
47291391 GTGATTTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.13
Consensus pattern (22 bp):
AAAAAAACAAAAAATTTCAAAG
Found at i:47292118 original size:3 final size:3
Alignment explanation
Indices: 47292112--47292199 Score: 104
Period size: 3 Copynumber: 29.0 Consensus size: 3
47292102 TGCTACTACC
*
47292112 ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
47292158 ACT ACT ACT ACT ATT ATT ATT ATT ATT ATT AGT GTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
47292200 TATATTAGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
3 75 0.96
4 3 0.04
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:47292466 original size:16 final size:16
Alignment explanation
Indices: 47292442--47292483 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
47292432 TTCAACTTTA
47292442 ATATATTATTATGTAT
1 ATATATTATTATGTAT
* *
47292458 ATATGTTATTATTTAT
1 ATATATTATTATGTAT
47292474 AT-TATTATTA
1 ATATATTATTA
47292484 AATCTTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
ATATATTATTATGTAT
Found at i:47292478 original size:12 final size:13
Alignment explanation
Indices: 47292442--47292483 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
47292432 TTCAACTTTA
47292442 ATATATTATTATGT
1 ATATATTATTAT-T
47292456 ATATATGTTATTATT
1 ATATA--TTATTATT
47292471 -TATATTATTATT
1 ATATATTATTATT
47292483 A
1 A
47292484 AATCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 8 0.32
14 9 0.36
15 1 0.04
16 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:47295764 original size:10 final size:10
Alignment explanation
Indices: 47295749--47295783 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
47295739 CTCTAAGGTC
47295749 ATGAAATGTT
1 ATGAAATGTT
* *
47295759 ATGAAAGGTC
1 ATGAAATGTT
47295769 ATGAAATGTT
1 ATGAAATGTT
47295779 ATGAA
1 ATGAA
47295784 GTGGTTTGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.31
Consensus pattern (10 bp):
ATGAAATGTT
Found at i:47295768 original size:20 final size:20
Alignment explanation
Indices: 47295743--47295783 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
47295733 AAATACCTCT
47295743 AAGGTCATGAAATGTTATGA
1 AAGGTCATGAAATGTTATGA
47295763 AAGGTCATGAAATGTTATGA
1 AAGGTCATGAAATGTTATGA
47295783 A
1 A
47295784 GTGGTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (20 bp):
AAGGTCATGAAATGTTATGA
Done.