Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 145 of 208
Found at i:47297346 original size:14 final size:14
Alignment explanation
Indices: 47297327--47297353 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47297317 CATTTCTTGG
47297327 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
47297341 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
47297354 ATTGGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:47303827 original size:25 final size:25
Alignment explanation
Indices: 47303769--47303855 Score: 88
Period size: 25 Copynumber: 3.4 Consensus size: 25
47303759 ATTCATATTT
47303769 AGGAACGCTCATGTGAG-CATATAAAC
1 AGGAA-GCTCATGTGAGCCATAT-AAC
* * *
47303795 GGGTAGCTC-TTTCGAGCCATATAAC
1 AGGAAGCTCATGT-GAGCCATATAAC
*
47303820 AGGAAGCTCATGTGAGCCATGTAAC
1 AGGAAGCTCATGTGAGCCATATAAC
*
47303845 GGGAAGCTCAT
1 AGGAAGCTCAT
47303856 AAGAGTCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
24 2 0.04
25 38 0.76
26 10 0.20
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (25 bp):
AGGAAGCTCATGTGAGCCATATAAC
Found at i:47303959 original size:50 final size:49
Alignment explanation
Indices: 47303882--47304048 Score: 130
Period size: 50 Copynumber: 3.4 Consensus size: 49
47303872 AAGCTCATAC
* *
47303882 GAGCCAATATCGGGAAGCTCCAAAGAGCC-ATTAATCAGGAAGCTCCTGA
1 GAGCCAATAACGAGAAGCTCCAAAGAGCCAATT-ATCAGGAAGCTCCTGA
** * *
47303931 GAGCCAAATAACGAGAAGCTCCGGAGAGCCAATTATTAGGAAGCTCAT-A
1 GAGCC-AATAACGAGAAGCTCCAAAGAGCCAATTATCAGGAAGCTCCTGA
* * * *
47303980 CAAGCC-ATAACGGGAAGCT-CAATAGAGCC-ATATATC-GGTATGCTCATGA
1 -GAGCCAATAACGAGAAGCTCCAA-AGAGCCAAT-TATCAGG-AAGCTCCTGA
* *
47304029 GAGCTAATAACGAGATGCTC
1 GAGCCAATAACGAGAAGCTC
47304049 TTGCGAGCTG
Statistics
Matches: 93, Mismatches: 16, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
47 5 0.05
48 31 0.33
49 18 0.19
50 36 0.39
51 3 0.03
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (49 bp):
GAGCCAATAACGAGAAGCTCCAAAGAGCCAATTATCAGGAAGCTCCTGA
Found at i:47303973 original size:25 final size:25
Alignment explanation
Indices: 47303894--47303976 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
47303884 GCCAATATCG
* *
47303894 GGAAGCTCCAAAGAGCC-ATTAATCA
1 GGAAGCTCCAGAGAGCCAATT-ATAA
*
47303919 GGAAGCTCCTGAGAGCCAA--ATAA
1 GGAAGCTCCAGAGAGCCAATTATAA
* *
47303942 CGAGAAGCTCCGGAGAGCCAATTATTA
1 -G-GAAGCTCCAGAGAGCCAATTATAA
47303969 GGAAGCTC
1 GGAAGCTC
47303977 ATACAAGCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
23 3 0.06
24 1 0.02
25 39 0.81
26 2 0.04
27 3 0.06
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (25 bp):
GGAAGCTCCAGAGAGCCAATTATAA
Found at i:47303994 original size:98 final size:98
Alignment explanation
Indices: 47303872--47304048 Score: 236
Period size: 98 Copynumber: 1.8 Consensus size: 98
47303862 CATAAATGGA
* * *
47303872 AAGCTCATACGAGCCAATATCGGGAAGCTCCAA-AGAGCCAT-TAATCAGG-AAGCTCCTGAGAG
1 AAGCTCATACAAGCCAATAACGGGAAGCT-CAATAGAGCCATAT-ATC-GGTAAGCTCATGAGAG
47303934 CCAAATAACGAGAAGCTCCGGAGAGCCAATTATTAGG
63 -CAAATAACGAGAAGCTCCGGAGAGCCAATTATTAGG
* *
47303971 AAGCTCATACAAGCC-ATAACGGGAAGCTCAATAGAGCCATATATCGGTATGCTCATGAGAGCTA
1 AAGCTCATACAAGCCAATAACGGGAAGCTCAATAGAGCCATATATCGGTAAGCTCATGAGAGCAA
*
47304035 ATAACGAGATGCTC
66 ATAACGAGAAGCTC
47304049 TTGCGAGCTG
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
97 20 0.29
98 34 0.49
99 15 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (98 bp):
AAGCTCATACAAGCCAATAACGGGAAGCTCAATAGAGCCATATATCGGTAAGCTCATGAGAGCAA
ATAACGAGAAGCTCCGGAGAGCCAATTATTAGG
Found at i:47304009 original size:48 final size:49
Alignment explanation
Indices: 47303819--47304009 Score: 153
Period size: 48 Copynumber: 3.9 Consensus size: 49
47303809 AGCCATATAA
** * * *
47303819 CAGGAAGCTCATGTGAGCCATGTAACGGGAAGCTCATAAGAGTC-ATAAAT
1 CAGGAAGCTCATACGAGCCA-ATAACGGGAAGCTCA-AAGAGCCAATTAAT
*
47303869 --GGAAAGCTCATACGAGCCAATATCGGGAAGCTCCAAAGAGCC-ATTAAT
1 CAGG-AAGCTCATACGAGCCAATAACGGGAAGCT-CAAAGAGCCAATTAAT
* * **
47303917 CAGGAAGCTCCTGA-GAGCCAAATAACGAGAAGCTCCGGAGAGCCAATT-AT
1 CAGGAAGCTCAT-ACGAGCC-AATAACGGGAAGCT-CAAAGAGCCAATTAAT
* *
47303967 TAGGAAGCTCATACAAGCC-ATAACGGGAAGCTCAATAGAGCCA
1 CAGGAAGCTCATACGAGCCAATAACGGGAAGCTCAA-AGAGCCA
47304010 TATATCGGTA
Statistics
Matches: 115, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
47 1 0.01
48 43 0.37
49 29 0.25
50 39 0.34
51 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (49 bp):
CAGGAAGCTCATACGAGCCAATAACGGGAAGCTCAAAGAGCCAATTAAT
Found at i:47306703 original size:46 final size:46
Alignment explanation
Indices: 47306636--47306888 Score: 433
Period size: 46 Copynumber: 5.6 Consensus size: 46
47306626 TTTGAGTACT
47306636 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
47306682 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
47306728 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
47306773 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
47306819 TTTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
47306864 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
47306889 ATCATACGTA
Statistics
Matches: 198, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
43 12 0.06
44 5 0.03
45 62 0.31
46 119 0.60
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:47306792 original size:91 final size:91
Alignment explanation
Indices: 47306636--47306888 Score: 447
Period size: 91 Copynumber: 2.8 Consensus size: 91
47306626 TTTGAGTACT
*
47306636 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAAGTGACAAAGT
47306701 GATAAGTGGTAACTTTAGCTACACTTA
65 GATAAGTGGTAACTTTAGCTACACTTA
47306728 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
*
47306793 ATAAGTGGTAGCTTTAGCTACACTTA
66 ATAAGTGGTAACTTTAGCTACACTTA
* *
47306819 TTTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGAC-AAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
47306882 ATAAGTG
66 ATAAGTG
47306889 ATCATACGTA
Statistics
Matches: 157, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
89 12 0.08
90 5 0.03
91 108 0.69
92 32 0.20
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (91 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGGTAACTTTAGCTACACTTA
Found at i:47306839 original size:137 final size:134
Alignment explanation
Indices: 47306636--47306888 Score: 443
Period size: 137 Copynumber: 1.9 Consensus size: 134
47306626 TTTGAGTACT
47306636 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
47306701 GATAAGTGGTAACTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCT
66 GATAAGTGGTAAC-CTAGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTGGTAGCCTAGCT
47306766 ACACTTA
128 ACACTTA
*
47306773 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATTTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
*
47306838 GATAAGTGGTAGCCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTG
66 GATAAGTGGTAACCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTG
47306889 ATCATACGTA
Statistics
Matches: 112, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
134 12 0.11
135 5 0.04
136 19 0.17
137 76 0.68
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (134 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGGTAACCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTGGTAGCCTAGCTACA
CTTA
Found at i:47313619 original size:21 final size:22
Alignment explanation
Indices: 47313595--47313641 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
47313585 GCAATTAATT
* *
47313595 TTTTATGA-ATTTTTTTATTTA
1 TTTTATAAGATTTTTTAATTTA
*
47313616 TTTT-TAAGATTTTTTAATTTT
1 TTTTATAAGATTTTTTAATTTA
47313637 TTTTA
1 TTTTA
47313642 CAATTATTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (22 bp):
TTTTATAAGATTTTTTAATTTA
Found at i:47316129 original size:19 final size:17
Alignment explanation
Indices: 47316105--47316139 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
47316095 TTTTTCCCTC
47316105 TTCTTTCTAAAATAAAGGT
1 TTCTTT-TAAAA-AAAGGT
47316124 TTCTTTTAAAAAAAGG
1 TTCTTTTAAAAAAAGG
47316140 CTTGATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (17 bp):
TTCTTTTAAAAAAAGGT
Found at i:47316213 original size:21 final size:22
Alignment explanation
Indices: 47316166--47316213 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
47316156 ATTTTGAATT
47316166 TTTTTAAAAAGAGAAAATTTAG
1 TTTTTAAAAAGAGAAAATTTAG
* *
47316188 ATTTTAACAAATA-AAAATTT-G
1 TTTTTAA-AAAGAGAAAATTTAG
47316209 TTTTT
1 TTTTT
47316214 TTTAGTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (22 bp):
TTTTTAAAAAGAGAAAATTTAG
Found at i:47316411 original size:149 final size:146
Alignment explanation
Indices: 47316163--47316628 Score: 560
Period size: 149 Copynumber: 3.1 Consensus size: 146
47316153 AAAATTTTGA
* * * *
47316163 ATTTTTTTAAAAA-GAGAAAATTTAGATTTTAACAAATAAAAATTTGTTTTTTTTAGTTATCTTA
1 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTAA-AAATAAAAATATG-TTTTTTTAGTCATTTTA
* * * *
47316227 AATGAAAGTTTAAAAATTTAAAACAAAGTTCTGATTTTTTTCAAGTATTTCAAAGTAAAAGCTTT
64 AAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAA-TAAAAGCTTT
47316292 AATCTTTAAGAAAAATAAT
128 AATCTTTAAGAAAAATAAT
*
47316311 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGCTTTTTTTAGTCATTTTA
1 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTT-AAAAATAAAAATATG-TTTTTTTAGTCATTTTA
* *
47316376 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAAC
64 AAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGA---TTTTTTTCAACTATTTC-AAATAAAAGC
*
47316441 TTTAATCTTTAAGAAAAATAGTT
125 TTTAATCTTTAAGAAAAATA-AT
*
47316464 ATTTTTTTAAAAAAAAGGGAGAAAGTTTAAATTTTTAAAAAATAAAAATATGTTTTTTTAAGTCA
1 ATTTTTTT---AAAAA-GGAGAAAGTTTAGA-TTTT-AAAAATAAAAATATGTTTTTTT-AGTCA
* *
47316529 TTTTAAAGGAATGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT-AACTATTTCGAAAT-AAG
59 TTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTC-AAATAAAA
* * * *
47316592 GTTTTGATTTTTAAGAAAAGTAAT
123 GCTTTAATCTTTAAGAAAAATAAT
47316616 GATTTTTTCTAAA
1 -ATTTTTT-TAAA
47316629 GAAAACTTTG
Statistics
Matches: 278, Mismatches: 25, Indels: 27
0.84 0.08 0.08
Matches are distributed among these distances:
148 13 0.05
149 73 0.26
150 2 0.01
151 3 0.01
152 43 0.15
153 38 0.14
154 14 0.05
155 7 0.03
156 5 0.02
157 20 0.07
158 60 0.22
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (146 bp):
ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAA
GGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAATAAAAGCTTTAAT
CTTTAAGAAAAATAAT
Found at i:47316566 original size:158 final size:151
Alignment explanation
Indices: 47316163--47316574 Score: 562
Period size: 149 Copynumber: 2.7 Consensus size: 151
47316153 AAAATTTTGA
* * * * *
47316163 ATTTTTTTAAAAA-GAGAAAATTTAGATTTTAACAAATAAAAATTTGTTTTTTTTAGTTATCTTA
1 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTTAGTCATTTTA
* * * * * *
47316227 AATGAAAGTTTAAAAATTTAAAACAAAGTTCTGA---TTTTTTTCAAGTATTTCAAAGTAAAAGC
65 AAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAAC
47316289 TTTAATCTTTAAGAAAAATAAT
130 TTTAATCTTTAAGAAAAATAAT
* *
47316311 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTGCTTTTTTTAGTCATTTTA
1 ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATG-TTTTTTTAGTCATTTTA
*
47316376 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAAC
65 AAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAAC
*
47316441 TTTAATCTTTAAGAAAAATAGTT
130 TTTAATCTTTAAGAAAAATA-AT
*
47316464 ATTTTTTTAAAAAAAAGGGAGAAAGTTTAAATTTTTAAAAAATAAAAATATGTTTTTTTAAGTCA
1 ATTTTTTT---AAAAA-GGAGAAAGTTTAGA-TTTTAAAAAATAAAAATATGTTTTTTT-AGTCA
*
47316529 TTTTAAAGGAATGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT
60 TTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT
47316575 AACTATTTCG
Statistics
Matches: 233, Mismatches: 20, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
148 13 0.06
149 74 0.32
152 45 0.19
153 9 0.04
156 5 0.02
157 20 0.09
158 67 0.29
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (151 bp):
ATTTTTTTAAAAAGGAGAAAGTTTAGATTTTAAAAAATAAAAATATGTTTTTTTAGTCATTTTAA
AGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTCAACTATTTCAAAATAAAAACT
TTAATCTTTAAGAAAAATAAT
Found at i:47316576 original size:30 final size:31
Alignment explanation
Indices: 47316542--47316603 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
47316532 TAAAGGAATG
*
47316542 TTTAA-AATTTTAAAACAAAGTTTTGATTTT
1 TTTAACAATTTCAAAACAAAGTTTTGATTTT
* * * *
47316572 TTTAACTATTTCGAAATAAGGTTTTGATTTT
1 TTTAACAATTTCAAAACAAAGTTTTGATTTT
47316603 T
1 T
47316604 AAGAAAAGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.52
Consensus pattern (31 bp):
TTTAACAATTTCAAAACAAAGTTTTGATTTT
Found at i:47319275 original size:20 final size:21
Alignment explanation
Indices: 47319239--47319283 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
47319229 TTTAATTTCG
*
47319239 TATTTTTTTATTTGACTTTAT
1 TATTATTTTATTTGACTTTAT
*
47319260 TATTATTTTA-TTGACTTTGT
1 TATTATTTTATTTGACTTTAT
47319280 TATT
1 TATT
47319284 CTTGTGTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.20, C:0.04, G:0.07, T:0.69
Consensus pattern (21 bp):
TATTATTTTATTTGACTTTAT
Found at i:47338344 original size:42 final size:42
Alignment explanation
Indices: 47338285--47338585 Score: 381
Period size: 42 Copynumber: 7.2 Consensus size: 42
47338275 AAAGAAAACA
* *
47338285 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCTACTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
47338327 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCACTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
47338369 TTCATTGCATATAGAGACCCAGGTGTGGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * ** * *
47338411 TTCATTGCATGTAGAGGCCTATATATGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
47338453 TTCATTGCATTTAGAGTCCCA-G-GTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
47338493 TTCATTACATTTAGAGGCCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* ** * *
47338535 TTCATTGCATTTAAAGGCCGGGGTGTAGAGGTCCATTTAGTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
47338577 TTTATTGCA
1 TTCATTGCA
47338586 CTGTATATGA
Statistics
Matches: 225, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 34 0.15
41 1 0.00
42 190 0.84
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:47338568 original size:166 final size:169
Alignment explanation
Indices: 47338285--47338590 Score: 438
Period size: 166 Copynumber: 1.8 Consensus size: 169
47338275 AAAGAAAACA
* * *
47338285 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCTACTTACTTTTCATTGCATTTAGAGGCCTAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCACTTACTTTTCATTACATTTAGAGGCCCAGG
* *
47338350 TGTGGAGGTCCACTTACTTTTCATTGCATATAGAGACCCAGGTGTGGAGGTCCATTCACTTTTCA
66 TGTGGAGGTCCACTTACTTTTCATTGCATATAAAGACCCAGGTGTAGAGGTCCATTCACTTTTCA
47338415 TTGCA-TGTAGAGGCCTATATATGGAGGCCCATTTACTT
131 TTGCACTGTAGAGGCCTATATATGGAGGCCCATTTACTT
* **
47338453 TTCATTGCATTTAGAGTCCCA-G-GTGGAGGTCCGTTTACTTTTCATTACATTTAGAGGCCCAGG
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCACTTACTTTTCATTACATTTAGAGGCCCAGG
** * * ** * * *
47338516 TGTGGAGGTCCGTTTACTTTTCATTGCATTTAAAGGCCGGGGTGTAGAGGTCCATTTAGTTTTTA
66 TGTGGAGGTCCACTTACTTTTCATTGCATATAAAGACCCAGGTGTAGAGGTCCATTCACTTTTCA
47338581 TTGCACTGTA
131 TTGCACTGTA
47338591 TATGAAGGCA
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
166 95 0.79
167 5 0.04
168 20 0.17
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (169 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCACTTACTTTTCATTACATTTAGAGGCCCAGG
TGTGGAGGTCCACTTACTTTTCATTGCATATAAAGACCCAGGTGTAGAGGTCCATTCACTTTTCA
TTGCACTGTAGAGGCCTATATATGGAGGCCCATTTACTT
Found at i:47339716 original size:150 final size:150
Alignment explanation
Indices: 47339426--47339722 Score: 406
Period size: 150 Copynumber: 2.0 Consensus size: 150
47339416 TTTTTTTAAA
* *
47339426 AGAGAAAGTTTAGATTTTAACAAATAAAAATATGTTTTTTAGTCATTTTAAAGGAAAGTTTAAAA
1 AGAGAAAGTTTAGATTTTAACAAATAAAAATATGTTTTTTAGTCATTTCAAAGGAAAATTTAAAA
* *
47339491 TTTTAAAATAAAATTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAGTCTTTAAGAAAAA
66 TTTTAAAACAAAACTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAGTCTTTAAGAAAAA
* *
47339556 TAGTGTTTTTTTTTAAAAAG
131 TAATGTTTTTTTCTAAAAAG
47339576 AGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTTTAAGTCATTTCAAAGGAAAATTTA
1 AGAGAAAGTTTAGATTTT-AACAAATAAAAATATG-TTTTTT-AGTCATTTCAAAGGAAAATTTA
* * * * *
47339640 AAATTTTAAAACAAAGCTTTGATTTTTTT-AACTATTTCATAAT--AAGGTTTTGATTTTTAAGA
63 AAATTTTAAAACAAAACTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAG-TCTTTAAGA
*
47339702 AAATTAAT-TATTTTTTCTAAA
127 AAAATAATGT-TTTTTTCTAAA
47339723 GAAAACTTTG
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
149 8 0.06
150 55 0.42
151 21 0.16
152 46 0.35
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (150 bp):
AGAGAAAGTTTAGATTTTAACAAATAAAAATATGTTTTTTAGTCATTTCAAAGGAAAATTTAAAA
TTTTAAAACAAAACTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTTTAGTCTTTAAGAAAAA
TAATGTTTTTTTCTAAAAAG
Found at i:47342514 original size:32 final size:32
Alignment explanation
Indices: 47342478--47342541 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
47342468 AAACATATTC
*
47342478 AAAAAAGGAATTTGCAACCATGCAAACACAAG
1 AAAAAAGGAATTTGCAACCATACAAACACAAG
*
47342510 AAAAAGGGAATTTGCAACCATACAAACACAAG
1 AAAAAAGGAATTTGCAACCATACAAACACAAG
47342542 TTCATTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (32 bp):
AAAAAAGGAATTTGCAACCATACAAACACAAG
Found at i:47353840 original size:27 final size:27
Alignment explanation
Indices: 47353810--47353936 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
47353800 AAGGAACGCT
*
47353810 TTTGTGGCGCAATATAAAAAGAATGCC
1 TTTGTGGCGCAATATGAAAAGAATGCC
**
47353837 TTTGTGGCATAATATGAAAAGAATGCC
1 TTTGTGGCGCAATATGAAAAGAATGCC
* * * **
47353864 ATTGTGGCACAATATGAAAGGAACACC
1 TTTGTGGCGCAATATGAAAAGAATGCC
*
47353891 TTTGTGGTGCAATATGAAAAGAATGCC
1 TTTGTGGCGCAATATGAAAAGAATGCC
47353918 TTTGTGGCGCAATATGAAA
1 TTTGTGGCGCAATATGAAA
47353937 GGAACACCTA
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (27 bp):
TTTGTGGCGCAATATGAAAAGAATGCC
Found at i:47353960 original size:27 final size:27
Alignment explanation
Indices: 47353799--47353966 Score: 149
Period size: 27 Copynumber: 6.2 Consensus size: 27
47353789 ACACGTCAGA
* * *
47353799 AAAGGAACGCTTTTGTGGCGCAATATA
1 AAAGGAACACCTTTGTGGCGCAATATG
* ** **
47353826 AAAAGAATGCCTTTGTGGCATAATATG
1 AAAGGAACACCTTTGTGGCGCAATATG
* ** * *
47353853 AAAAGAATGCCATTGTGGCACAATATG
1 AAAGGAACACCTTTGTGGCGCAATATG
*
47353880 AAAGGAACACCTTTGTGGTGCAATATG
1 AAAGGAACACCTTTGTGGCGCAATATG
* **
47353907 AAAAGAATGCCTTTGTGGCGCAATATG
1 AAAGGAACACCTTTGTGGCGCAATATG
* *
47353934 AAAGGAACACCTATGTAGCG-AATTATG
1 AAAGGAACACCTTTGTGGCGCAA-TATG
47353961 AAAGGA
1 AAAGGA
47353967 TAGTCTTTGT
Statistics
Matches: 117, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 2 0.02
27 115 0.98
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (27 bp):
AAAGGAACACCTTTGTGGCGCAATATG
Found at i:47353975 original size:54 final size:54
Alignment explanation
Indices: 47353847--47353980 Score: 173
Period size: 54 Copynumber: 2.5 Consensus size: 54
47353837 TTTGTGGCAT
* * * *
47353847 AATATGAAAAGAATGCCATTGTGGCACAATATGAAAGGAACACCTTTGTGGTGC
1 AATATGAAAAGAATGCCTTTGTGGCACAATATGAAAGGAACACCTATGTAGCGC
*
47353901 AATATGAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACCTATGTAGCG-
1 AATATGAAAAGAATGCCTTTGTGGCACAATATGAAAGGAACACCTATGTAGCGC
* *
47353954 AATTATG-AAAGGATAGTCTTTGTGGCA
1 AA-TATGAAAAGAAT-GCCTTTGTGGCA
47353981 ATAAATTTTG
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 8 0.11
54 62 0.89
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (54 bp):
AATATGAAAAGAATGCCTTTGTGGCACAATATGAAAGGAACACCTATGTAGCGC
Found at i:47353978 original size:81 final size:81
Alignment explanation
Indices: 47353799--47353966 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
47353789 ACACGTCAGA
* * * **
47353799 AAAGGAACGCTTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCATAATATGAAAAGAATGCC
1 AAAGGAACACCTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACACC
*
47353864 ATTGTGGCACAATATG
66 ATTGTAGCACAATATG
* * * *
47353880 AAAGGAACACCTTTGTGGTGCAATATGAAAAGAATGCCTTTGTGGCGCAATATGAAAGGAACACC
1 AAAGGAACACCTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACACC
*
47353945 -TATGTAGCGA-ATTATG
66 AT-TGTAGC-ACAATATG
47353961 AAAGGA
1 AAAGGA
47353967 TAGTCTTTGT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 1 0.01
81 72 0.97
82 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (81 bp):
AAAGGAACACCTTTGTGGCGCAATATAAAAAGAATGCCTTTGTGGCACAATATGAAAAGAACACC
ATTGTAGCACAATATG
Found at i:47356754 original size:12 final size:12
Alignment explanation
Indices: 47356737--47356774 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
47356727 AATTGTAAAC
*
47356737 AATTAAAATTTT
1 AATTAAAATTAT
47356749 AATT-AAA-TAT
1 AATTAAAATTAT
47356759 AATTAAAATTAT
1 AATTAAAATTAT
47356771 AATT
1 AATT
47356775 CTAAATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 6 0.26
11 6 0.26
12 11 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AATTAAAATTAT
Found at i:47375013 original size:40 final size:40
Alignment explanation
Indices: 47374966--47375100 Score: 173
Period size: 40 Copynumber: 3.4 Consensus size: 40
47374956 GTGTTATACT
* * * *
47374966 TTCTGTTTGGCGCGTTTCGGTTGGATCAGCTCTTATAAAC
1 TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
*
47375006 TTCTGTTTGGTGTGTTTCGGTTAGATCAGCTCTTATGAGC
1 TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
* * *
47375046 TTTTGTCTGGTGTGCTTCGGTTGGA-CTAGCTCTTATGAGC
1 TTCTGTTTGGTGTGTTTCGGTTGGATC-AGCTCTTATGAGC
*
47375086 TTCTATTTGGTGTGT
1 TTCTGTTTGGTGTGT
47375101 CTGATAGATT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.12, C:0.16, G:0.27, T:0.44
Consensus pattern (40 bp):
TTCTGTTTGGTGTGTTTCGGTTGGATCAGCTCTTATGAGC
Found at i:47377477 original size:25 final size:25
Alignment explanation
Indices: 47377391--47377485 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 25
47377381 AGAGCCATTA
*
47377391 ATCGAGAAGCTCATAAGAGCCATAT
1 ATCGAGAAGCTCATAAGAGCCAAAT
* * * * *
47377416 GTCGGGATGCTCCTAAGAGCTAAAT
1 ATCGAGAAGCTCATAAGAGCCAAAT
* * *
47377441 AATAG-GAAGCTCGTGAGAGCCAAAT
1 -ATCGAGAAGCTCATAAGAGCCAAAT
*
47377466 ATCGAGATGCTCATAAGAGC
1 ATCGAGAAGCTCATAAGAGC
47377486 TGTGGTGTGT
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
24 3 0.06
25 47 0.90
26 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (25 bp):
ATCGAGAAGCTCATAAGAGCCAAAT
Found at i:47385088 original size:50 final size:51
Alignment explanation
Indices: 47384993--47385088 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 51
47384983 AATTCATATT
* *
47384993 CAGGAATGCTCATGTGAACATATAAATGGGTACCTCTTTCAAGCCATATAA
1 CAGGAATGCTCATGTGAACATATAAATGGGAACCTCTTGCAAGCCATATAA
* * * *
47385044 CAGGAA-GCTCATGTGAGCCATGTAAA-GGGAAGCTCTTGCGAGCCA
1 CAGGAATGCTCATGTGA-ACATATAAATGGGAACCTCTTGCAAGCCA
47385089 ATTATCGAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 25 0.66
51 13 0.34
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (51 bp):
CAGGAATGCTCATGTGAACATATAAATGGGAACCTCTTGCAAGCCATATAA
Found at i:47385162 original size:24 final size:24
Alignment explanation
Indices: 47385070--47385162 Score: 64
Period size: 24 Copynumber: 3.8 Consensus size: 24
47385060 GCCATGTAAA
*
47385070 GGGAAGCTCTTGCGAGCC-AATTAT
1 GGGAAGCTCATGCGAGCCAAATT-T
* * **
47385094 CGAGAAGCTCATACGAGCCATAA-AC
1 -GGGAAGCTCATGCGAGCCA-AATTT
* * * *
47385119 GGGAAGATCAAGAGATCCAAATTT
1 GGGAAGCTCATGCGAGCCAAATTT
47385143 GGGAAGCTCATGCGAGCCAA
1 GGGAAGCTCATGCGAGCCAA
47385163 TATCAGAAAG
Statistics
Matches: 48, Mismatches: 17, Indels: 7
0.67 0.24 0.10
Matches are distributed among these distances:
23 2 0.04
24 29 0.60
25 15 0.31
27 2 0.04
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.17
Consensus pattern (24 bp):
GGGAAGCTCATGCGAGCCAAATTT
Found at i:47385258 original size:25 final size:25
Alignment explanation
Indices: 47385230--47385284 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
47385220 ATGCTTCTAC
47385230 GAGCTAAATAACGGGAAGCTCATAA
1 GAGCTAAATAACGGGAAGCTCATAA
* * *
47385255 GAGCCAAATATCGGGATGCTCATAA
1 GAGCTAAATAACGGGAAGCTCATAA
47385280 GAGCT
1 GAGCT
47385285 TTGATGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (25 bp):
GAGCTAAATAACGGGAAGCTCATAA
Found at i:47385486 original size:21 final size:21
Alignment explanation
Indices: 47385431--47385486 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 21
47385421 TTATACATGG
*
47385431 TAAATATACATTTCACAAACA
1 TAAATATACATTTTACAAACA
* * *
47385452 T-AATATTCAATTTA-AACATA
1 TAAATATACATTTTACAA-ACA
47385472 TAAATATACATTTTA
1 TAAATATACATTTTA
47385487 GTTACACGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.48
21 12 0.44
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (21 bp):
TAAATATACATTTTACAAACA
Found at i:47386182 original size:14 final size:15
Alignment explanation
Indices: 47386163--47386193 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47386153 TATTATTTAA
47386163 TTTA-TTTATCATCT
1 TTTATTTTATCATCT
47386177 TTTATTTTATCATCT
1 TTTATTTTATCATCT
47386192 TT
1 TT
47386194 CCAATTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTATTTTATCATCT
Found at i:47387014 original size:21 final size:21
Alignment explanation
Indices: 47386989--47387030 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
47386979 CAAGCTTACT
*
47386989 AAGCATTCATTGCTTATGTAG
1 AAGCATTCATTGCTTACGTAG
* *
47387010 AAGCATTTATTTCTTACGTAG
1 AAGCATTCATTGCTTACGTAG
47387031 TTATCTTTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (21 bp):
AAGCATTCATTGCTTACGTAG
Found at i:47387803 original size:6 final size:6
Alignment explanation
Indices: 47387788--47387818 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
47387778 TAGAGAGTTA
*
47387788 CACGGG CACGGT CACGGG CACGGG CACGGG C
1 CACGGG CACGGG CACGGG CACGGG CACGGG C
47387819 TAGACATGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.35, G:0.45, T:0.03
Consensus pattern (6 bp):
CACGGG
Found at i:47390073 original size:42 final size:42
Alignment explanation
Indices: 47390007--47390135 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
47389997 AGTTAAGCAG
* * * *
47390007 AAACCAATAAGGGTTGAACGGAAGCTCGTAAGAGCTTAACGA
1 AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
* * *
47390049 AAACCCATAAGGGTTAAATAGAAGCTTAGT-AGAGCTGAAC-A
1 AAACCCATAAGGGTTAAACAGAAGC-TCGTAAGAGCTAAACGA
* * * *
47390090 GAAACTCATATGAGTTAAACAGAAGCTCGTAAGAGCTAAATGA
1 -AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
47390133 AAA
1 AAA
47390136 GTAAACATGA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.06
42 62 0.89
43 4 0.06
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
AAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTAAACGA
Found at i:47390129 original size:21 final size:21
Alignment explanation
Indices: 47390027--47390129 Score: 57
Period size: 21 Copynumber: 4.9 Consensus size: 21
47390017 GGGTTGAACG
*
47390027 GAAGCTCGTAAGAGCTTAAC-
1 GAAGCTCGTAAGAGCTAAACA
* * * * * *
47390047 GAAAACCCATAAGGGTTAAATA
1 G-AAGCTCGTAAGAGCTAAACA
* *
47390069 GAAGCTTAGT-AGAGCTGAACA
1 GAAGC-TCGTAAGAGCTAAACA
* * * *
47390090 GAAACTCATATGAGTTAAACA
1 GAAGCTCGTAAGAGCTAAACA
47390111 GAAGCTCGTAAGAGCTAAA
1 GAAGCTCGTAAGAGCTAAA
47390130 TGAAAAGTAA
Statistics
Matches: 54, Mismatches: 25, Indels: 7
0.63 0.29 0.08
Matches are distributed among these distances:
20 3 0.06
21 49 0.91
22 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
GAAGCTCGTAAGAGCTAAACA
Found at i:47393143 original size:18 final size:18
Alignment explanation
Indices: 47393120--47393158 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47393110 ATTAAATAAA
*
47393120 ATAAAAATATGTA-ATTAT
1 ATAAAAAAAT-TATATTAT
47393138 ATAAAAAAATTATATTAT
1 ATAAAAAAATTATATTAT
47393156 ATA
1 ATA
47393159 CATATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAAAAAAATTATATTAT
Found at i:47393578 original size:93 final size:100
Alignment explanation
Indices: 47393411--47393612 Score: 267
Period size: 93 Copynumber: 2.1 Consensus size: 100
47393401 AGTTTAAAAT
* *
47393411 AAAATA-TATTTAACATAATGATAAATATAAAAAAATATATAATTTTATTATATAATTACATATT
1 AAAATATTATTTAACATAATGAT-AATATAAAAAAATATATAATTTTATTATATAACTACAAATT
47393475 TAGTAATTTATTTATAT-AATAAAA-A-ATTAATTA
65 TAGTAATTTATTTATATAAATAAAAGATATTAATTA
* *
47393508 AAAATATTTTTTAACATAATGAT-ATAT-ATAAAATATAT-A-TTTATTATATAACTACAAATTT
1 AAAATATTATTTAACATAATGATAATATAAAAAAATATATAATTTTATTATATAACTACAAATTT
* *
47393569 ATTATTTTATTTATATAAATAAAAGAGTTATTAATTA
66 AGTAATTTATTTATATAAATAAAAGA--TATTAATTA
47393606 AAAATAT
1 AAAATAT
47393613 GAATTAAAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
93 34 0.37
94 8 0.09
95 11 0.12
96 4 0.04
97 6 0.06
98 30 0.32
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (100 bp):
AAAATATTATTTAACATAATGATAATATAAAAAAATATATAATTTTATTATATAACTACAAATTT
AGTAATTTATTTATATAAATAAAAGATATTAATTA
Found at i:47393634 original size:93 final size:93
Alignment explanation
Indices: 47393431--47393638 Score: 214
Period size: 93 Copynumber: 2.2 Consensus size: 93
47393421 TAACATAATG
* * *
47393431 ATAAATATA-AAAAAATATATAATTTTATTATATAATTACATATTTAGTAATTTATTTATATAAT
1 ATAAAGATATAAAAAATATATAATTTTATTATATAACTACAAATTTAGTAATTTATTTATATAAT
***
47393495 AAAAAATTAATTAAAAATATTTTTTAAC
66 AAAAAATTAATTAAAAATATGAATTAAC
* * *
47393523 ATAATGATATATATAAAATATAT-A-TTTATTATATAACTACAAATTTATTATTTTATTTATATA
1 ATAAAGATATA-A-AAAATATATAATTTTATTATATAACTACAAATTTAGTAATTTATTTATAT-
47393586 AATAAAAGAGTTATTAATTAAAAATATGAATTAA-
63 AATAAAA-A---ATTAATTAAAAATATGAATTAAC
47393620 A-AAAG-T-TGAAAAAATATAT
1 ATAAAGATAT-AAAAAATATAT
47393639 TTATTAATTA
Statistics
Matches: 97, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
92 7 0.07
93 44 0.45
94 11 0.11
95 12 0.12
96 3 0.03
97 1 0.01
98 19 0.20
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.42
Consensus pattern (93 bp):
ATAAAGATATAAAAAATATATAATTTTATTATATAACTACAAATTTAGTAATTTATTTATATAAT
AAAAAATTAATTAAAAATATGAATTAAC
Found at i:47396332 original size:20 final size:19
Alignment explanation
Indices: 47396306--47396355 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
47396296 GGGACTAAAT
47396306 TGAAAAAATGTAAAATTTA
1 TGAAAAAATGTAAAATTTA
* * *
47396325 TGGAAAAATTCTAAATTTTA
1 T-GAAAAAATGTAAAATTTA
47396345 TGAAATAAATG
1 TGAAA-AAATG
47396356 GGTTGCTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.34
Consensus pattern (19 bp):
TGAAAAAATGTAAAATTTA
Found at i:47397146 original size:73 final size:72
Alignment explanation
Indices: 47396975--47397149 Score: 185
Period size: 73 Copynumber: 2.4 Consensus size: 72
47396965 TTTATAAGCG
*
47396975 TCCCGATATATGGCTCTTTGTAAGCTTCCTAATTAATAGCTCTTCGGAGCTTCCCAATATGGCTC
1 TCCCGATATATGGCTCTTTG--AGCTTCCTAATTAATAGCTCTTCGAAGCTTCCCAATATGGCTC
47397040 GCTTGAACT
64 GCTTGAACT
* ** * **
47397049 TCCCGATATATGGCTATCCGGAGCTTCCTAATTAATGGCTCTTCGAAG-TTACCCGTTATTGGCT
1 TCCCGATATATGGCTCT-TTGAGCTTCCTAATTAATAGCTCTTCGAAGCTT-CCCAATA-TGGCT
*
47397113 CG-TATGAGCT
63 CGCT-TGAACT
*
47397123 TCCTGAT-TATGGCTCTTATGAGCTTCC
1 TCCCGATATATGGCTCTT-TGAGCTTCC
47397150 CAATATACAG
Statistics
Matches: 84, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
72 2 0.02
73 47 0.56
74 34 0.40
75 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (72 bp):
TCCCGATATATGGCTCTTTGAGCTTCCTAATTAATAGCTCTTCGAAGCTTCCCAATATGGCTCGC
TTGAACT
Found at i:47400152 original size:12 final size:11
Alignment explanation
Indices: 47400118--47400153 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
47400108 ACTAGGTTTT
47400118 ATTTTTATATA
1 ATTTTTATATA
47400129 ATTTTTAT-TA
1 ATTTTTATATA
47400139 ATTTATTATATA
1 ATTT-TTATATA
47400151 ATT
1 ATT
47400154 CTTTTTACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.26
11 12 0.52
12 5 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTTTTATATA
Found at i:47403407 original size:109 final size:109
Alignment explanation
Indices: 47403216--47403423 Score: 355
Period size: 109 Copynumber: 1.9 Consensus size: 109
47403206 TGAGTTTAAA
* *
47403216 TTCAATAGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
47403281 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
* *
47403325 TTCAAAAGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
1 TTCAAAAGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
*
47403389 CCTCGAATTTCCAAACGCAAAATATTGCCTTATTT
65 CCTCGAATTTCCAAACGCAAAACATTGCCTTATTT
47403424 GGAAACATTT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
108 1 0.01
109 92 0.99
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
Found at i:47403965 original size:10 final size:10
Alignment explanation
Indices: 47403933--47403980 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
47403923 CTATCATAAA
47403933 ATATAAAAAGT
1 ATATAAAAA-T
*
47403944 ATGTATATAAAT
1 A--TATAAAAAT
47403956 ATATAAAAAT
1 ATATAAAAAT
*
47403966 ATAAAAAAAT
1 ATATAAAAAT
47403976 ATATA
1 ATATA
47403981 CTCCTATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 21 0.68
11 1 0.03
12 2 0.06
13 7 0.23
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:47405030 original size:20 final size:20
Alignment explanation
Indices: 47404994--47405033 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
47404984 TCCTATTGTT
47404994 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
47405014 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
47405034 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:47405914 original size:43 final size:43
Alignment explanation
Indices: 47405861--47406184 Score: 168
Period size: 44 Copynumber: 7.6 Consensus size: 43
47405851 CTTTAATCCA
*
47405861 CTCCACTGTAA-CTTCGGGGAGATAGGATAGTGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAGGATAGTGTCTTCGATCTG
* * * * * ** *
47405904 CTCCGCTGTAATCTCAGGGAGATAAGAT-CTCTTATTTTAATCCG
1 CTCCACTGTAATCTCAGGGAGATAGGATAGT-GT-CTTCGATCTG
47405948 CTCCACTGTAA-CTTCAGGGAGATAGGATAGTGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAGGATAGTGTCTTCGATCTG
* * * * *
47405991 CTCCGCTGTAATCTCAGGGAGATAAGAT-CTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATAGTG----TCTTCGATCTG
* * ** * * *
47406037 TTCCACTGTAATCTCAGGGAGATAAGA-CCTGACGT-GATCTT
1 CTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGATCTG
* * * * ** *
47406078 CTCTACTGTAA-CTTCAGAGAGATA--A-AAT-CCTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAGGATAGTGTCTTCGATCTG
* * * *
47406117 CTCCATTGTAATCTCAAGGAGATAGGATTACTATCCTT-GATCTG
1 CTCCACTGTAATCTCAGGGAGATAGGA-TAGTGT-CTTCGATCTG
*
47406161 CTCCGCTGTAATCTCAGGGAGATA
1 CTCCACTGTAATCTCAGGGAGATA
47406185 AGATCTCTGG
Statistics
Matches: 212, Mismatches: 49, Indels: 39
0.71 0.16 0.13
Matches are distributed among these distances:
38 2 0.01
39 23 0.11
40 2 0.01
41 24 0.11
42 5 0.02
43 57 0.27
44 58 0.27
45 4 0.02
46 37 0.17
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (43 bp):
CTCCACTGTAATCTCAGGGAGATAGGATAGTGTCTTCGATCTG
Found at i:47405957 original size:44 final size:44
Alignment explanation
Indices: 47405898--47406192 Score: 177
Period size: 44 Copynumber: 6.9 Consensus size: 44
47405888 TAGTGTCTTC
*
47405898 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTATTTT
1 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTT
* * * * * * *
47405942 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATAGT-GT-CTTC
1 GATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTCTTATTTT
* ***
47405985 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTT
1 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTTA-T-TTT
* * * **
47406031 GGTCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGA-CGT
1 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTT
* * * *
47406072 GATCTTCTCTACTGTAA-CTTCAGAGAGATAAAATC-C----TTT
1 GATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTCTTATTTT
* * * * * *
47406111 AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TAC-TATCCTT
1 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-CTTAT-TTT
*
47406155 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
1 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT
47406193 GGCTTTAGTT
Statistics
Matches: 184, Mismatches: 49, Indels: 35
0.69 0.18 0.13
Matches are distributed among these distances:
39 24 0.13
40 3 0.02
41 26 0.14
42 3 0.02
43 31 0.17
44 62 0.34
45 3 0.02
46 32 0.17
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTTATTTT
Found at i:47405969 original size:87 final size:83
Alignment explanation
Indices: 47405815--47406192 Score: 349
Period size: 87 Copynumber: 4.5 Consensus size: 83
47405805 AGACTTGATG
* * * * * *
47405815 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATC-CTTTAATCCACTCCACTGTAA-CTTCGG
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTTAATCCGCTCCACTGTAATC-TCAG
*
47405878 GGAGATAGGATAGTGTCTT
65 GGAGATAGGATACTGTCTT
47405897 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAA-CT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC----TTTAATCCGCTCCACTGTAATC-
*
47405961 TCAGGGAGATAGGATAGTGTCTT
61 TCAGGGAGATAGGATACTGTCTT
** * *
47405984 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAAT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC------TCTTTAATCCGCTCCACTGTAAT
* * * *
47406049 CTCAGGGAGATAAGA-CCTGACGT
60 CTCAGGGAGATAGGATACTGTCTT
* ** * * * *
47406072 -GATCTTCTCTACTGTAA-CTTCAGAGAGATAAAATC-CTTTAATCCGCTCCATTGTAATCTCAA
1 CGATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTCTTTAATCCGCTCCACTGTAATCTCAG
*
47406134 GGAGATAGGATTACTATCCTT
65 GGAGATAGGA-TACTGT-CTT
47406155 -GATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCT
47406193 GGCTTTAGTT
Statistics
Matches: 242, Mismatches: 36, Indels: 34
0.78 0.12 0.11
Matches are distributed among these distances:
80 30 0.12
82 34 0.14
83 31 0.13
84 3 0.01
86 1 0.00
87 107 0.44
88 4 0.02
89 29 0.12
90 1 0.00
93 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (83 bp):
CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTTTAATCCGCTCCACTGTAATCTCAGG
GAGATAGGATACTGTCTT
Found at i:47406482 original size:86 final size:86
Alignment explanation
Indices: 47406368--47406709 Score: 334
Period size: 88 Copynumber: 3.9 Consensus size: 86
47406358 AATCTGTAAC
* * * *
47406368 CTTTAACCAGCTCCAACGCAACCGATGGAGGCAAGGCTTTGTTTTTGATTTGCTTTGCTGTTAAT
1 CTTTAACCAGCTCCAACGCAACCGATGGACGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
47406433 GCAGGAAGGCAAGATTTGCTT
66 GCAGGAAGGCAAGATTTGCTT
* *
47406454 CTTTAACTAGCTCC-ACTGCAATCGATGGACGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAA
1 CTTTAACCAGCTCCAAC-GCAACCGATGGACGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAA
* *
47406518 TGTAGGAAGGCAAGATCTT-TTGT
65 TGCAGGAAGGCAAGAT-TTGCT-T
* * * * ** * *
47406541 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCA
1 CTTTAACCAGCTCCAACGCAACCGATGGACGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTA
* *
47406605 ATGTAGGAAGGCAAGATCTT-TTGT
64 ATGCAGGAAGGCAAGAT-TTGCT-T
* * * * ** * *
47406629 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCA
1 CTTTAACCAGCTCCAACGCAACCGATGGACGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTA
47406693 ATGCAGGAAGGCAAGAT
64 ATGCAGGAAGGCAAGAT
47406710 CTGTAACTTC
Statistics
Matches: 231, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
85 2 0.01
86 76 0.33
87 29 0.13
88 124 0.54
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.30
Consensus pattern (86 bp):
CTTTAACCAGCTCCAACGCAACCGATGGACGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
GCAGGAAGGCAAGATTTGCTT
Found at i:47406573 original size:44 final size:44
Alignment explanation
Indices: 47406525--47406663 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 44
47406515 TAATGTAGGA
47406525 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
* * * * * ** ** * * *
47406569 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGTAGG
1 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACCGAAAG
47406612 AAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
1 -AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
47406657 AGGCAAG
1 AGGCAAG
47406664 GTTTGTGTCT
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
43 16 0.24
44 35 0.52
45 16 0.24
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAAAG
Found at i:47406608 original size:88 final size:88
Alignment explanation
Indices: 47406484--47406711 Score: 415
Period size: 88 Copynumber: 2.6 Consensus size: 88
47406474 ATCGATGGAC
*
47406484 GCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGTAGGAAGGCAAGATCTTTTGTCTTCAA
1 GCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAA
47406547 CCAGCTCTATCACAACCGAAAGAG
65 CCAGCTCTATCACAACCGAAAGAG
47406571 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAAC
1 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAAC
47406636 CAGCTCTATCACAACCGAAAGAG
66 CAGCTCTATCACAACCGAAAGAG
*
47406659 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCT
1 GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCT
47406712 GTAACTTCAT
Statistics
Matches: 137, Mismatches: 2, Indels: 3
0.96 0.01 0.02
Matches are distributed among these distances:
86 5 0.04
87 7 0.05
88 125 0.91
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (88 bp):
GCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTTTTGTCTTCAAC
CAGCTCTATCACAACCGAAAGAG
Found at i:47406705 original size:44 final size:44
Alignment explanation
Indices: 47406569--47406707 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
47406559 CAACCGAAAG
*
47406569 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGA
* * * * * ** ** * *
47406613 AGGCAAGATCTTTTGTCTTCAACCAGC-TCTATCACAACCGAAAG-
1 AGGCAAGGT-TTGTGTCTTCGATCTGCTTCGCTGTCAA-TGAAGGA
*
47406657 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGA
47406701 AGGCAAG
1 AGGCAAG
47406708 ATCTGTAACT
Statistics
Matches: 67, Mismatches: 24, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
43 16 0.24
44 35 0.52
45 16 0.24
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGAAGGA
Found at i:47408881 original size:15 final size:16
Alignment explanation
Indices: 47408863--47408896 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
47408853 TTTTTTCCTA
47408863 TTTTGA-CTTTGATTT
1 TTTTGATCTTTGATTT
*
47408878 TTTTGATTTTTGATTT
1 TTTTGATCTTTGATTT
47408894 TTT
1 TTT
47408897 GAATTCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.12, C:0.03, G:0.12, T:0.74
Consensus pattern (16 bp):
TTTTGATCTTTGATTT
Found at i:47413136 original size:109 final size:109
Alignment explanation
Indices: 47412945--47413152 Score: 355
Period size: 109 Copynumber: 1.9 Consensus size: 109
47412935 TGAGTTTAAA
* *
47412945 TTCAATAGGATATTTGACAATTTGGTTAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
1 TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
47413010 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
66 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
* *
47413054 TTCAAAAGGATATTT-AGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
1 TTCAAAAGGATATTTGA-CAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTT
*
47413118 CCTCGAATTTCCAAACGCAAAATATTGCCTTATTT
65 CCTCGAATTTCCAAACGCAAAACATTGCCTTATTT
47413153 GGAAACATTT
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
108 1 0.01
109 92 0.99
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
TTCAAAAGGATATTTGACAATTTGGTCAAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTC
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT
Found at i:47414757 original size:20 final size:20
Alignment explanation
Indices: 47414721--47414760 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
47414711 TCCTATTGTT
47414721 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
47414741 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
47414761 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:47416483 original size:54 final size:55
Alignment explanation
Indices: 47416401--47416510 Score: 213
Period size: 54 Copynumber: 2.0 Consensus size: 55
47416391 TGACATATCA
47416401 ACAAAATTAATAAAGGTTAACTTTTCCTATGGAGAGTTAAAATAAT-TTTTTTCT
1 ACAAAATTAATAAAGGTTAACTTTTCCTATGGAGAGTTAAAATAATCTTTTTTCT
47416455 ACAAAATTAATAAAGGTTAACTTTTCCTATGGAGAGTTAAAATAATCTTTTTTCT
1 ACAAAATTAATAAAGGTTAACTTTTCCTATGGAGAGTTAAAATAATCTTTTTTCT
47416510 A
1 A
47416511 AATTGGGAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 46 0.84
55 9 0.16
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (55 bp):
ACAAAATTAATAAAGGTTAACTTTTCCTATGGAGAGTTAAAATAATCTTTTTTCT
Found at i:47433712 original size:25 final size:24
Alignment explanation
Indices: 47433684--47433761 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
47433674 CTATTCCAAA
47433684 ATTAATATTATTTTAATAGTTTAAT
1 ATTAATATTATTTTAATA-TTTAAT
* *
47433709 ATTAA-ATTTAATTTAATACTT-AT
1 ATTAATA-TTATTTTAATATTTAAT
* *
47433732 ATTAATAGTATTTTAGTAATTTAAT
1 ATTAATATTATTTTAAT-ATTTAAT
47433757 ATTAA
1 ATTAA
47433762 AGTGATTATC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
23 14 0.33
24 7 0.16
25 22 0.51
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (24 bp):
ATTAATATTATTTTAATATTTAAT
Found at i:47433899 original size:62 final size:62
Alignment explanation
Indices: 47433701--47433900 Score: 147
Period size: 62 Copynumber: 3.1 Consensus size: 62
47433691 TTATTTTAAT
* *
47433701 AGTTTAATATTAAATTTAATTTAATACTTATATTAATAGTATTTTAGTAATTTAATATTAAAGTG
1 AGTTTAATATTAAATTTAATTTAATA-TTA-ATCAAT--TA---TATTAATTTAATATTAAAGTG
47433766 ATT-
59 ATTA
* * * * * * * * ** * *
47433769 A-TCTTAATATAAAATTTAATTTAATATTTATCTATAAGATAAACATT-CTATT-ATTTTAATA
1 AGT-TTAATATTAAATTTAATTTAATATTAATCAATTATATTAA-TTTAATATTAAAGTGATTA
*
47433830 AGATTTAATATTAAATTTAATGTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
1 AG-TTTAATATTAAATTTAATTTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
47433893 AGTTTAAT
1 AGTTTAAT
47433901 CATAGTTGAA
Statistics
Matches: 98, Mismatches: 27, Indels: 20
0.68 0.19 0.14
Matches are distributed among these distances:
60 4 0.04
61 10 0.10
62 45 0.46
63 8 0.08
64 1 0.01
66 4 0.04
67 3 0.03
68 23 0.23
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (62 bp):
AGTTTAATATTAAATTTAATTTAATATTAATCAATTATATTAATTTAATATTAAAGTGATTA
Found at i:47438582 original size:59 final size:59
Alignment explanation
Indices: 47438517--47438636 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
47438507 TCACTAACAA
47438517 AATGAAAATTACAACTACATGCAATGCATGAATAGTACAGCTAAAACTTAAAATAAACT
1 AATGAAAATTACAACTACATGCAATGCATGAATAGTACAGCTAAAACTTAAAATAAACT
47438576 AATGAAAATTACAACTACATGCAATGCATGAATAGTACAGCTAAAACTTAAAATAAACT
1 AATGAAAATTACAACTACATGCAATGCATGAATAGTACAGCTAAAACTTAAAATAAACT
47438635 AA
1 AA
47438637 CTCAATTTTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (59 bp):
AATGAAAATTACAACTACATGCAATGCATGAATAGTACAGCTAAAACTTAAAATAAACT
Found at i:47446559 original size:16 final size:17
Alignment explanation
Indices: 47446538--47446571 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
47446528 AAATATTATG
47446538 AAATAAA-AACAAACAA
1 AAATAAATAACAAACAA
*
47446554 AAATAAATATCAAACAA
1 AAATAAATAACAAACAA
47446571 A
1 A
47446572 CACCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAATAACAAACAA
Found at i:47447418 original size:12 final size:12
Alignment explanation
Indices: 47447401--47447425 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47447391 AGCCCAAGTG
47447401 TGAATATTTATA
1 TGAATATTTATA
47447413 TGAATATTTATA
1 TGAATATTTATA
47447425 T
1 T
47447426 TTTTCCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAATATTTATA
Found at i:47447783 original size:13 final size:13
Alignment explanation
Indices: 47447761--47447798 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
47447751 TACAATCACT
47447761 TGGCTATATGAAA
1 TGGCTATATGAAA
* *
47447774 TGGTTATATGATA
1 TGGCTATATGAAA
47447787 TGGCTATATGAA
1 TGGCTATATGAA
47447799 TCGATTATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (13 bp):
TGGCTATATGAAA
Found at i:47463565 original size:23 final size:23
Alignment explanation
Indices: 47463539--47463599 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
47463529 GGTTTTGGTT
47463539 TTGGTACGAATTGGAATTGGG-TA
1 TTGGTACGAATTGGAA-TGGGATA
* * * *
47463562 TTGGTATGAAATGGTATGGGATTT
1 TTGGTACGAATTGGAATGGGA-TA
47463586 TTGGTACGAATTGG
1 TTGGTACGAATTGG
47463600 CTCAAAAAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 4 0.13
23 13 0.43
24 13 0.43
ACGTcount: A:0.25, C:0.03, G:0.34, T:0.38
Consensus pattern (23 bp):
TTGGTACGAATTGGAATGGGATA
Found at i:47466541 original size:26 final size:25
Alignment explanation
Indices: 47466507--47466557 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
47466497 CAATTGTATA
**
47466507 GAAATAATATAAATAGTAAATAAAC
1 GAAATAATATAAATAAAAAATAAAC
47466532 GAAATTAATATAAATAAAAAATAAAC
1 GAAA-TAATATAAATAAAAAATAAAC
47466558 AATGACAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (25 bp):
GAAATAATATAAATAAAAAATAAAC
Found at i:47467106 original size:21 final size:18
Alignment explanation
Indices: 47467076--47467116 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 18
47467066 AAGATTCGTT
47467076 TAAAAAAATAAATATGTACA
1 TAAAAAAAT-AA-ATGTACA
47467096 TAAAAACAATAAATGTACA
1 TAAAAA-AATAAATGTACA
47467115 TA
1 TA
47467117 TATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 8 0.40
21 3 0.15
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.24
Consensus pattern (18 bp):
TAAAAAAATAAATGTACA
Found at i:47468689 original size:44 final size:43
Alignment explanation
Indices: 47468615--47468723 Score: 139
Period size: 44 Copynumber: 2.5 Consensus size: 43
47468605 CTGCTTTCTG
*
47468615 CAACTTCAGAGAGATAAGATCTATCTCTTTAATCCACTCCACTA
1 CAACTTCAGGGAGATAAGAT-TATCTCTTTAATCCACTCCACTA
* * * *
47468659 CAACTTCAGGGAGATAGGATTAT-TGGCTTTAATCTACTCCATTG
1 CAACTTCAGGGAGATAAGATTATCT--CTTTAATCCACTCCACTA
47468703 CAACTTCAGGGAGATAAGATT
1 CAACTTCAGGGAGATAAGATT
47468724 TGCCATCTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 3 0.05
44 53 0.93
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGATTATCTCTTTAATCCACTCCACTA
Found at i:47468754 original size:45 final size:44
Alignment explanation
Indices: 47468615--47468766 Score: 132
Period size: 44 Copynumber: 3.4 Consensus size: 44
47468605 CTGCTTTCTG
* * *
47468615 CAACTTCAGAGAGATAAGATCTA-T-CTCTTTAATCCACTCCACTA
1 CAACTTCAGGGAGATAAGAT-TATTGC-CTTTAATCTACCCCACTA
* * * * *
47468659 CAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCATTG
1 CAACTTCAGGGAGATAAGATTATTGCCTTTAATCTACCCCACTA
*
47468703 CAACTTCAGGGAGATAAGA-T-TTGCCATCTTCAATCTGCCCCACTA
1 CAACTTCAGGGAGATAAGATTATTGCC-T-TT-AATCTACCCCACTA
* *
47468748 CAACTTCTGGGGGATAAGA
1 CAACTTCAGGGAGATAAGA
47468767 CTTGTTTATT
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 54 0.61
45 27 0.30
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTATTGCCTTTAATCTACCCCACTA
Found at i:47469003 original size:99 final size:100
Alignment explanation
Indices: 47468819--47469124 Score: 404
Period size: 99 Copynumber: 3.1 Consensus size: 100
47468809 GACCTGATAT
* * * * * *
47468819 CTTCAATCTGTTTAATTGGAATGTCGGGG-AATAAGATTTGCCATGGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
* * * *
47468883 CTATACCACCAAGGAAGTAAGATTTACCATTGC-G
66 CTACACCGCCAGGGAAGTAAGATTCACCATTGCAG
*
47468917 ACTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGA-TCGCCTTCGTAGCTTCAATCTGTTCC
1 -CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCC
* *
47468981 ACTACACCGCCAGGGAATTAAGATTCACCGTTGCAG
65 ACTACACCGCCAGGGAAGTAAGATTCACCATTGCAG
* *
47469017 CTTCAATC-TTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATATGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
* * * *
47469081 CTACACTGCCAGGGGAGTAAGATTCGCCGTTGCAG
66 CTACACCGCCAGGGAAGTAAGATTCACCATTGCAG
47469116 CTTCAATCT
1 CTTCAATCT
47469125 GCTCCATTGT
Statistics
Matches: 184, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
98 28 0.15
99 149 0.81
100 7 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTGTTCCA
CTACACCGCCAGGGAAGTAAGATTCACCATTGCAG
Found at i:47469024 original size:50 final size:50
Alignment explanation
Indices: 47468944--47469130 Score: 164
Period size: 50 Copynumber: 3.8 Consensus size: 50
47468934 TGCAATGTTG
* * *
47468944 GGGAAACAAGA-TCGCC-TTCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAATAAGATTCGCCGTT-GCAGCTTCAATCTGTTCCACTACACTGCCA
* * ** * * * ***
47468993 GGGAATTAAGATTCACCGTTGCAGCTTCAATCT-TTTAATTGCAATGTTG
1 GGGAAATAAGATTCGCCGTTGCAGCTTCAATCTGTTCCACTACACTGCCA
* * * *
47469042 GGGAAACAAGATTCGCCGTCGTAGCTTCAATATGTTCCACTACACTGCCA
1 GGGAAATAAGATTCGCCGTTGCAGCTTCAATCTGTTCCACTACACTGCCA
* * *
47469092 GGGGAGTAAGATTCGCCGTTGCAGCTTCAATCTGCTCCA
1 GGGAAATAAGATTCGCCGTTGCAGCTTCAATCTGTTCCA
47469131 TTGTAATGCC
Statistics
Matches: 101, Mismatches: 34, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
49 43 0.43
50 56 0.55
51 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (50 bp):
GGGAAATAAGATTCGCCGTTGCAGCTTCAATCTGTTCCACTACACTGCCA
Found at i:47469436 original size:267 final size:266
Alignment explanation
Indices: 47468951--47469558 Score: 914
Period size: 267 Copynumber: 2.3 Consensus size: 266
47468941 TTGGGGAAAC
* * * *
47468951 AAGA-TCGCCTTCGTAGCTTCAATCTGTTCCACTACACCGCCAGGGAATTAAGATTCACCGTTGC
1 AAGATTCGCCTTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCGCCGTTGC
* *
47469015 AGCTTCAATCTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATATGTTCC
66 GGCTTCAATCTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATATATTCC
* * *
47469080 ACTACACTGCCAGGGGAGTAAGATTCGCCGTTGCAGCTTCAATCTGCTCCATTGTAATGCCAAAG
131 ACTACACCGCCAGGGGAGTAAGATTCGCCATTGCAGCTTCAATCTGCTCCACTGTAATGCCAAAG
* * * *
47469145 AGATAGGATTCGCTGCCTACAGCTTCAATTCGCTCTACTTCAGCTAATCCAAGCCTTAATGCCAG
196 AGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAG
47469210 GGAGAT
261 GGAGAT
* * * *
47469216 AAGATTCGCCTTCATGGCTTCAATCTGCTCCACTACACCGCCAGGGAAGTAGGATTCGTCGTTGC
1 AAGATTCGCCTTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCGCCGTTGC
* * * * *
47469281 GGCTTCAATCTTTTAAATTGCAATGTTGGGGAAACGAGATTCGCTGTTGTAGCTTTAATCTATTC
66 GGCTTCAATCTTTT-AATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATATATTC
*
47469346 CACTACACCGCCAGGGGAGTAAGATTCGCCATTGC-GACTTTAATCTGCTCCACTGTAATGCCAA
130 CACTACACCGCCAGGGGAGTAAGATTCGCCATTGCAG-CTTCAATCTGCTCCACTGTAATGCCAA
47469410 AGAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCC
194 AGAGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCC
47469475 AGGGAGAT
259 AGGGAGAT
* * * ** * *
47469483 AAGATTCGCCGTCGTGGCTTCAGTCTGCTCCACTATAATGCCGGGGAAATAAGATTCGCCGTTGT
1 AAGATTCGCCTTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCGCCGTTGC
47469548 GGCTTCAATCT
66 GGCTTCAATCT
47469559 CTTCCATTGC
Statistics
Matches: 307, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
265 4 0.01
266 67 0.22
267 236 0.77
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (266 bp):
AAGATTCGCCTTCGTGGCTTCAATCTGCTCCACTACACCGCCAGGGAAATAAGATTCGCCGTTGC
GGCTTCAATCTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATATATTCC
ACTACACCGCCAGGGGAGTAAGATTCGCCATTGCAGCTTCAATCTGCTCCACTGTAATGCCAAAG
AGATAGGATTCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAG
GGAGAT
Found at i:47481293 original size:26 final size:25
Alignment explanation
Indices: 47481259--47481309 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
47481249 AAATTGTATA
**
47481259 GAAATAATATAAATAGTAAATAAAC
1 GAAATAATATAAATAAAAAATAAAC
47481284 GAAATTAATATAAATAAAAAATAAAC
1 GAAA-TAATATAAATAAAAAATAAAC
47481310 AATGACAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (25 bp):
GAAATAATATAAATAAAAAATAAAC
Found at i:47481862 original size:21 final size:18
Alignment explanation
Indices: 47481832--47481870 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 18
47481822 GATTCGTTTT
47481832 AAAAAATAAATATGTACATA
1 AAAAAAT-AA-ATGTACATA
47481852 AAAACAATAAATGTACATA
1 AAAA-AATAAATGTACATA
47481871 TATATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 6 0.33
21 3 0.17
ACGTcount: A:0.64, C:0.08, G:0.05, T:0.23
Consensus pattern (18 bp):
AAAAAATAAATGTACATA
Found at i:47481895 original size:22 final size:20
Alignment explanation
Indices: 47481870--47481911 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 20
47481860 AAATGTACAT
47481870 ATATATAAATTAAAATAATTAC
1 ATATATAAA--AAAATAATTAC
47481892 --ATATAAAAAAATAATTAC
1 ATATATAAAAAAATAATTAC
47481910 AT
1 AT
47481912 TATTTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 6
0.75 0.00 0.25
Matches are distributed among these distances:
18 11 0.61
20 7 0.39
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATATAAAAAAATAATTAC
Found at i:47485084 original size:13 final size:14
Alignment explanation
Indices: 47485052--47485089 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
47485042 TCACTCGCTT
*
47485052 TTTCTTTTTCATCTC
1 TTTC-TTTTCATCGC
47485067 TTTCTTTTC-TCGC
1 TTTCTTTTCATCGC
47485080 TTTCTTTTCA
1 TTTCTTTTCA
47485090 CTTTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 5 0.24
15 4 0.19
ACGTcount: A:0.05, C:0.26, G:0.03, T:0.66
Consensus pattern (14 bp):
TTTCTTTTCATCGC
Found at i:47497029 original size:13 final size:13
Alignment explanation
Indices: 47497011--47497053 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
47497001 TATATATATG
47497011 TTATTTTATTTTT
1 TTATTTTATTTTT
*
47497024 TTATTTTTTTTTT
1 TTATTTTATTTTT
*
47497037 TTCTTTTCATTTATT
1 TTATTTT-ATTT-TT
47497052 TT
1 TT
47497054 TGCCTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 18 0.72
14 3 0.12
15 4 0.16
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:47497683 original size:13 final size:14
Alignment explanation
Indices: 47497655--47497695 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
47497645 TTAATATTGC
47497655 TATATATTATAATAT
1 TATATATTAT-ATAT
47497670 TATATATTAT-TAT
1 TATATATTATATAT
*
47497683 TATACA-TATATAT
1 TATATATTATATAT
47497696 ACACGTGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 3 0.12
13 11 0.46
15 10 0.42
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (14 bp):
TATATATTATATAT
Found at i:47502200 original size:21 final size:21
Alignment explanation
Indices: 47502149--47502201 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
47502139 ACCATTGTTT
* *
47502149 CTAATCTCACCGCTACAGTAT
1 CTAATCTCACCACTACAGTAA
* *
47502170 CCAATTTCACCACTACAGTAA
1 CTAATCTCACCACTACAGTAA
47502191 CTAATCTCACC
1 CTAATCTCACC
47502202 GCCACCGCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.36, G:0.06, T:0.26
Consensus pattern (21 bp):
CTAATCTCACCACTACAGTAA
Found at i:47507347 original size:108 final size:108
Alignment explanation
Indices: 47507151--47507357 Score: 344
Period size: 108 Copynumber: 1.9 Consensus size: 108
47507141 AAATGTTTCC
47507151 AAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
* *
47507216 CTCGTTCGACCAAATAGCTAAATATCCTTTTGAAACTTTTCAA
66 CTCGTTCAACCAAATAGCTAAATATCCTATTGAAACTTTTCAA
* *
47507259 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
* *
47507324 CTCGTTTAACCAAATTG-TCAAATATCCTATTGAA
66 CTCGTTCAACCAAATAGCT-AAATATCCTATTGAA
47507358 TTTAAACTCA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
107 1 0.01
108 91 0.99
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (108 bp):
AAATAAGGCAATATTTTGCGTTTGAAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
CTCGTTCAACCAAATAGCTAAATATCCTATTGAAACTTTTCAA
Found at i:47508752 original size:19 final size:20
Alignment explanation
Indices: 47508712--47508755 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
47508702 GTCTCTTTAG
* *
47508712 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
47508731 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
47508750 GCATTA
1 GCATTA
47508756 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:47512938 original size:73 final size:82
Alignment explanation
Indices: 47512833--47513112 Score: 321
Period size: 88 Copynumber: 3.5 Consensus size: 82
47512823 TGAAGTACAG
* *
47512833 ATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTTTC-GTTGTGAT
1 ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTTTCGGTTGTGAT
*
47512897 -GAGT-G-TGA-AAAAA
66 GGACTGGTTGACAAAAA
47512910 ATCTTGCTTTT-TGCA-TGA-AGCG-AGCAGATCGAAGACACAAACCTTG-CTCTTCGGTT-TGA
1 ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT-TTCGGTTGTGA
*
47512969 TGGACTGGTTGAGCAAAAG
65 TGGACTGGTTGA-CAAAAA
47512988 ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTGTG
1 ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTG-C-CTTTCGGTTGTG
* *
47513053 ATAGAGCTGGTTGAAGACAAAAG
64 ATGGA-CTGGTT---GACAAAAA
* * * *
47513076 ATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAA
1 ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAA
47513113 AACAAAGCTT
Statistics
Matches: 175, Mismatches: 9, Indels: 27
0.83 0.04 0.13
Matches are distributed among these distances:
72 2 0.01
73 31 0.18
74 10 0.06
75 4 0.02
76 7 0.04
77 9 0.05
78 15 0.09
79 4 0.02
80 3 0.02
81 4 0.02
82 24 0.14
84 7 0.04
85 8 0.05
86 6 0.03
88 39 0.22
89 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (82 bp):
ATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTTTCGGTTGTGAT
GGACTGGTTGACAAAAA
Found at i:47513172 original size:86 final size:79
Alignment explanation
Indices: 47513074--47513234 Score: 205
Period size: 86 Copynumber: 1.9 Consensus size: 79
47513064 TGAAGACAAA
* *
47513074 AGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCTTTGCATCCATCGATTGC
1 AGATCTTGCCTTCCTACA-TAACAGCAAAGCA-ATC--AAA-AAAGCCTTGCATCCATCG-TTGC
47513139 AGTGGAGCTAGTTAAAGAAGC
60 -GTGGAGCTAGTTAAAGAAGC
* * *
47513160 AGATCTTGCCTTCCTGCATAACAGCAAAGCAATCAAAAAAGCCTTGCCTCCATCGTTGCTTGGAG
1 AGATCTTGCCTTCCTACATAACAGCAAAGCAATCAAAAAAGCCTTGCATCCATCGTTGCGTGGAG
*
47513225 CTGGTTAAAG
66 CTAGTTAAAG
47513235 GTTACAGATT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
79 14 0.20
80 4 0.06
81 16 0.23
82 3 0.04
84 3 0.04
85 12 0.17
86 17 0.25
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (79 bp):
AGATCTTGCCTTCCTACATAACAGCAAAGCAATCAAAAAAGCCTTGCATCCATCGTTGCGTGGAG
CTAGTTAAAGAAGC
Found at i:47513688 original size:86 final size:83
Alignment explanation
Indices: 47513571--47513774 Score: 297
Period size: 86 Copynumber: 2.4 Consensus size: 83
47513561 CCAAAGAATT
*
47513571 AGATCTTATCTCCCTG-GATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAA-TTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTA
47513634 CAGTGGAGCGGATTAAAATAAG
66 CAGTGGAGCGGATT---A-AAG
47513656 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTA
*
47513721 CAGTGGAGTGGATTAAAG
66 CAGTGGAGCGGATTAAAG
* * * *
47513739 -GATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCG
47513775 CATCAAGTCT
Statistics
Matches: 111, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
82 32 0.29
83 3 0.03
84 1 0.01
85 16 0.14
86 43 0.39
87 16 0.14
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (83 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCCGAAGTTA
CAGTGGAGCGGATTAAAG
Found at i:47513709 original size:43 final size:43
Alignment explanation
Indices: 47513533--47513712 Score: 170
Period size: 43 Copynumber: 4.2 Consensus size: 43
47513523 CGTCAGGTCT
* * * * * *
47513533 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTAGATCT
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT--ATCC
47513577 TATCTCCCTG-GATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
* * * * * ** *
47513619 TATCTCCCTGA-ATTACAGTGGAGCGGAT-TAAAATAAGAGATCT
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA-CA-CTATCC
47513662 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
47513705 TATCTCCC
1 TATCTCCC
47513713 CGAAGTTACA
Statistics
Matches: 108, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.03
42 29 0.27
43 45 0.42
44 28 0.26
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCC
Found at i:47513722 original size:43 final size:43
Alignment explanation
Indices: 47513577--47513728 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 43
47513567 AATTAGATCT
*
47513577 TATCTCCCTGGA-TTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGACACTATCC
* * * * * ** *
47513619 TATCTCCCTGAA-TTACAGTGGAGCGGAT-TAAAATAAGAGATCT
1 TATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGA-CA-CTATCC
47513662 TATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACACTATCC
1 TATCTCCCTGAAG-TTACAGCGGAGCAGATCGAAGACACTATCC
* *
47513705 TATCTCCCCGAAGTTACAGTGGAG
1 TATCTCCCTGAAGTTACAGCGGAG
47513729 TGGATTAAAG
Statistics
Matches: 85, Mismatches: 19, Indels: 11
0.74 0.17 0.10
Matches are distributed among these distances:
41 3 0.04
42 27 0.32
43 35 0.41
44 17 0.20
45 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (43 bp):
TATCTCCCTGAAGTTACAGCGGAGCAGATCGAAGACACTATCC
Found at i:47514576 original size:20 final size:20
Alignment explanation
Indices: 47514551--47514590 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
47514541 CATGACGGAA
47514551 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
47514571 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
47514591 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:47516354 original size:109 final size:109
Alignment explanation
Indices: 47516157--47516364 Score: 355
Period size: 109 Copynumber: 1.9 Consensus size: 109
47516147 AAATGTTTCC
47516157 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
* *
47516222 CTCGTTCGACCAAATAGCTAAATATCCTTTTGAAAACTTTTCAA
66 CTCGTTCAACCAAATAGCTAAATATCCTATTGAAAACTTTTCAA
*
47516266 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
* *
47516331 CTCGTTTAACCAAATTG-TCAAATATCCTATTGAA
66 CTCGTTCAACCAAATAGCT-AAATATCCTATTGAA
47516365 TTTAAACTCA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
108 1 0.01
109 92 0.99
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (109 bp):
AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
CTCGTTCAACCAAATAGCTAAATATCCTATTGAAAACTTTTCAA
Found at i:47519454 original size:11 final size:11
Alignment explanation
Indices: 47519423--47519458 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
47519413 GAGTAAAAAG
47519423 AATTATATAATA
1 AATTATATAA-A
47519435 AATTA-ATAAA
1 AATTATATAAA
47519445 AATTATATAAA
1 AATTATATAAA
47519456 AAT
1 AAT
47519459 AAAACCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.26
11 12 0.52
12 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTATATAAA
Found at i:47520582 original size:10 final size:10
Alignment explanation
Indices: 47520568--47520605 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
47520558 TGCTCCTTCT
47520568 TTTTTATTGAA
1 TTTTTA-TGAA
47520579 TTTTTATGAA
1 TTTTTATGAA
47520589 TTTTTTAT-AA
1 -TTTTTATGAA
47520599 TTTTTAT
1 TTTTTAT
47520606 TTTAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.27
10 6 0.23
11 13 0.50
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (10 bp):
TTTTTATGAA
Found at i:47522491 original size:73 final size:72
Alignment explanation
Indices: 47522414--47522584 Score: 177
Period size: 73 Copynumber: 2.3 Consensus size: 72
47522404 CTGTATATTG
*
47522414 GGAAGCTCATAAGAGCCATA-ATCAGGAAGCTCATA-CGAGCCAATAACGGGTAA-CTTCGAAGA
1 GGAAGCTCA-AAGAGCCATATATCAGGAAGCTCA-AGCGAGCC-ATAACGGG-AAGCTCCGAAGA
47522476 GCCATTAATTA
62 GCCATTAATTA
** * * * ** *
47522487 GGAAGCTCCGGATAGCCATATATCGGGAAGTTCAAGCGAGCCATATTGGGAAGCTCCGAAGAGCT
1 GGAAGCT-CAAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACGGGAAGCTCCGAAGAGCC
47522552 ATTAATTA
65 ATTAATTA
47522560 GGAAGCTTACAAAGAGCCATATATC
1 GGAAGC-T-CAAAGAGCCATATATC
47522585 GGGACGCTTA
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
72 2 0.03
73 46 0.57
74 32 0.40
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (72 bp):
GGAAGCTCAAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACGGGAAGCTCCGAAGAGCCA
TTAATTA
Found at i:47523246 original size:20 final size:20
Alignment explanation
Indices: 47523200--47523248 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
47523190 AATAGCAACC
47523200 CATTTATTT-CATAAAATTTA
1 CATTT-TTTCCATAAAATTTA
* * *
47523220 GAATTTTTCCATAAATTTTA
1 CATTTTTTCCATAAAATTTA
47523240 CATTTTTTC
1 CATTTTTTC
47523249 AATTTAGTCC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (20 bp):
CATTTTTTCCATAAAATTTA
Found at i:47531412 original size:6 final size:6
Alignment explanation
Indices: 47531401--47531431 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
47531391 GCCATGTCTA
*
47531401 GCCCGT GCCCGT GCCCGT GACCGT GCCCGT G
1 GCCCGT GCCCGT GCCCGT GCCCGT GCCCGT G
47531432 TACTCTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.45, G:0.35, T:0.16
Consensus pattern (6 bp):
GCCCGT
Found at i:47533903 original size:24 final size:25
Alignment explanation
Indices: 47533850--47533936 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
47533840 CAGATATCAA
47533850 AGCTCTTATGAGCATCCCGATATTT
1 AGCTCTTATGAGCATCCCGATATTT
* * *
47533875 GGCTCTTATGAGC-TTCCGTTATTT
1 AGCTCTTATGAGCATCCCGATATTT
* * * **
47533899 AGCTCGTA-GAAGCATCTCGACATAC
1 AGCTCTTATG-AGCATCCCGATATTT
47533924 AGCTCTTATGAGC
1 AGCTCTTATGAGC
47533937 TTCTCGATTA
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
23 1 0.02
24 18 0.38
25 27 0.57
26 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
AGCTCTTATGAGCATCCCGATATTT
Found at i:47533998 original size:24 final size:24
Alignment explanation
Indices: 47533971--47534063 Score: 64
Period size: 24 Copynumber: 3.8 Consensus size: 24
47533961 CTTTCTGATA
47533971 TTGGCTCGCATGAGCTTCCCAAAT
1 TTGGCTCGCATGAGCTTCCCAAAT
* * * * **
47533995 TTGGATCTCTTGATCTTCCC-GTT
1 TTGGCTCGCATGAGCTTCCCAAAT
* *
47534018 TATGGCTCGTATGAGCTTCTCGATAA-
1 T-TGGCTCGCATGAGCTTC-CCA-AAT
*
47534044 TTGGCTCGCAAGAGCTTCCC
1 TTGGCTCGCATGAGCTTCCC
47534064 TTTACATGGC
Statistics
Matches: 48, Mismatches: 17, Indels: 8
0.66 0.23 0.11
Matches are distributed among these distances:
23 2 0.04
24 29 0.60
25 16 0.33
26 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.22, T:0.34
Consensus pattern (24 bp):
TTGGCTCGCATGAGCTTCCCAAAT
Found at i:47534099 original size:50 final size:51
Alignment explanation
Indices: 47534045--47534140 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 51
47534035 TCTCGATAAT
* *
47534045 TGGCTCGCAAGAGCTTCCC-TTTACATGGCTCACATGAGC-TTCCTGTTATA
1 TGGCTCGAAAGAGCTACCCATTTACAT-GCTCACATGAGCATTCCTGTTATA
* * * *
47534095 TGGCTTGAAAGAGGTACCCATTTATATGTTCACATGAGCATTCCTG
1 TGGCTCGAAAGAGCTACCCATTTACATGCTCACATGAGCATTCCTG
47534141 AATATGAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 26 0.68
51 12 0.32
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (51 bp):
TGGCTCGAAAGAGCTACCCATTTACATGCTCACATGAGCATTCCTGTTATA
Found at i:47543912 original size:39 final size:38
Alignment explanation
Indices: 47543856--47543975 Score: 127
Period size: 39 Copynumber: 3.1 Consensus size: 38
47543846 AATCTATCAG
47543856 ACACACCAA-ATAGAAGCTCATAAGAGCT-AGTCCAACGAA
1 ACACACCAACA-A-AAGCTCATAAGAGCTGA-TCCAACGAA
* *
47543895 GCACACCAGACAAAAGCTCATAAGAGCTGATCTAACCGAA
1 ACACACCA-ACAAAAGCTCATAAGAGCTGATCCAA-CGAA
* * *
47543935 ACACACCAACAGAAGTTTATAAGAGCTGATCCAACCGAA
1 ACACACCAACAAAAGCTCATAAGAGCTGATCCAA-CGAA
47543974 AC
1 AC
47543976 GCGCCAAACA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
39 55 0.79
40 14 0.20
41 1 0.01
ACGTcount: A:0.44, C:0.27, G:0.16, T:0.13
Consensus pattern (38 bp):
ACACACCAACAAAAGCTCATAAGAGCTGATCCAACGAA
Found at i:47562328 original size:85 final size:83
Alignment explanation
Indices: 47561900--47569088 Score: 4541
Period size: 85 Copynumber: 85.3 Consensus size: 83
47561890 CGGGAGCCGA
* * * * * * * * *
47561900 GAGCCACGAGCACCATCGCCACCTCGGTTACTCGGATGTG-GGGAGCCTTGCGTAGTATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47561964 CTTGGTGCTTGGATGTGCAG
65 CTTGGTGC-TGGATGTGCGG
* * *
47561984 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT-CGAGGAGCCTCGAGTC-GCATCAGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCA
* *
47562047 CCTTGGTGGCTCAGATGTGTGG
64 CCTTGGT-GCT-GGATGTGCGG
* ** * * *
47562069 GA-ACTCGAGCAGCATTTGTACCTTGGTGCTCGGATGTG-TGGAGCCTCGGGCAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * **
47562132 TTGATGGTGGGATGTATGG
66 TTGGTGCT-GGATGTGCGG
* * * * *
47562151 GAGCCTCGAGCAGCATCGTCACCTTGGGGCTCGGATGTGCAGAACCCTCGAGCAGCATC-GCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47562215 TTGGTCCTGGGACGTGCGG
66 TTGGTGCT-GGATGTGCGG
* * * * * * *
47562234 GAGCCTCGAGCAACATCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47562299 CTTGGTGCAGGAATGTGTGG
65 CTTGGTGCTGG-ATGTGCGG
** ** * * * * * ** *
47562319 GAGCCTCGAGC-GTTTTTGCACCTTGGTGGATC-GATGCGCGGGAGTCGCGAGCACCATCGATAA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47562382 CTTGGTGCTGGGATGTGTGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * *
47562402 GAGCCTTGAGCACCAT-GGCACCTTGGTTGCTCGGATGTGGGGGAG-CTCGCGCAGTATCGACAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47562465 CTTGGTACTTGGATGTGCGG
65 CTTGGTGC-TGGATGTGCGG
* * * *
47562485 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT-TGCGGGAGCCT-GGGCAGTATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47562548 CTTGGTGCTGGGCTGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * * * *
47562568 GAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCGGGACCCTCGAGCAACATCGGGACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47562633 TTGGTGGCTCGGATGTACGG
66 TTGGT-GCT-GGATGTGCGG
* * * *
47562653 GAGCCTC-AGCA-CATTGGCACCTT-GTGCTGGGATGTGCGGCAGCCTCGAGTAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47562715 TTGGTGCTTGGATGCGCGG
66 TTGGTGC-TGGATGTGCGG
* * * * * * *
47562734 GAGCCTCGAGCTGCATCGG-ACCTTGGAGGCTCAGATGTGCGGGAGACTCGAGTAGCA-CTTGTA
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCA
*
47562797 CCTTGGTGTTCGGATGTGCGG
64 CCTTGGTGCT-GGATGTGCGG
* * * *
47562818 GAGCCTCGAGCACCATCGGTAGCTTGGTGGCT-AGATGTGC-GGAGCCTCG-G--GCATCGGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA-
* * **
47562878 CGATGTCGGCGACCTTGG-TG-GCTCA
64 C-CT-T-GGTG--C-TGGATGTGC-GG
* * * * * * * *
47562903 GATG--T-GCAGGAGCCTCGAGCAGCATCGGTAC-C--TTGGTGCTGGGATG--TGCG-GGAGCC
1 GA-GCCTCG-AGCAGCATCG-GCA-CCTTGGTGCTCGGAT-GTGC-GGGA-GCCT-CGAGCAGCA
** * ** * * *
47562959 TCGAGCAGGATCGGCACCT--TTATGCTG
58 TCG-GCA-CCTTGG-TGCTGGATGTGCGG
*** * ** * * ** * * * *
47562986 GAATGTGCG-GGAGCCCCGAGCAGCATCGGCACCTTGG-TGCT-C-AGATG--T-GTAGGA-CTT
1 GAGCCT-CGAGCAGCATCG-GCA-CCTTGG-TGCTCGGATG-TGCGGGA-GCCTCG-AGCAGCAT
* ** *
47563043 CAGGC-CGTATCGGCACCTTGG-TG-GCTCG
59 C-GGCACCT-T-GG-TGC-TGGATGTGC-GG
* * ** * * * ** **
47563071 GATG-CGCG-GGAGC-T-GAG-AGCC-ACGAGCAC-CA--T-CGCCA-CCTC-AGTTGC-TCGG-
1 GA-GCCTCGAGCAGCATCG-GCA-CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGC
47563122 A--TGTGG-G--GGA-GCTTGC-G
63 ACCT-TGGTGCTGGATG--TGCGG
* ** * * ** * *
47563139 TAGTATCG-GCA-CCTTGG-TGC-TGGATG-TGCAGGA-GCCT-CGAGCA-CCATCG-GCA-CCT
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCT-C-GGATG--TGCG-GGAGCC-TCGAGCAGCAT
* ** * * * * **
47563194 TGG-TGCTGGGATG-TCGAGGAGCCTC
59 CGGCACCTTGG-TGCTGGATGTG-CGG
* * * * ** *
47563219 GAG--TCGCATCAGCA-C-----CTTGGTGGCTCAGATGTGTGGGAGACTCGAGCAGCATTTGTA
1 GAGCCTCG-AGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
47563276 CCTTGGTACTCCGATGTG-TG
64 CCTTGGTGCT-GGATGTGCGG
* * * * * * *
47563296 GAGCCTCGGGCAGCATCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47563361 CTTGGTGCAGGAATGTGTGG
65 CTTGGTGCTGG-ATGTGCGG
* ** ** * * * * * ** *
47563381 GAGCCTCGAGCCGTTTTTGCACCTTGGTGGATCGGATGCGCGGGAGTCGCGAGCACCATCGATAA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47563446 CTTGGTGCTGGATGTGTGG
65 CTTGGTGCTGGATGTGCGG
* * * * * *
47563465 GAGCCTTGAACACCATCGGCACCTTGGTTGCTCGGATGTGGGGGAGCCTCGCGCAGTATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47563530 CTTGGTACTTGGATGTGCGG
65 CTTGGTGC-TGGATGTGCGG
* * * * * *
47563550 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTTG-GCAGTATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47563614 CTTGGTGCTGGGCTGTGC-G
65 CTTGGTGCT-GGATGTGCGG
* * *
47563633 GAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCAGGA--CTCGAGCAGCATCGG-ACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47563695 TTGGTGGCTCGGATGTACGG
66 TTGGT-GCT-GGATGTGCGG
* * * * *
47563715 GAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGGATGTGCGGCAGCATCGAGCCGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47563780 TTGGTGCTGCGAGGTGCGG
66 TTGGTGCTG-GATGTGCGG
* *** * * * *
47563799 GAGCCTCGAGCCGCAT-GGCACCTTGGTGGCTCGGATACACGGAAGCCTCGAGCACCATAGGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* * *
47563863 CTTGGTACTGGAT-CGCAG
65 CTTGGTGCTGGATGTGCGG
* * * * *
47563881 GAGCCTCGAGCACCATCGGAACTTTGTTGCAT-GGATGTGC-GGAGTCTCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47563944 CTTGATACTTGGATGTGCGG
65 CTTGGTGC-TGGATGTGCGG
* * * * * * *
47563964 GAGCCGCTAGCACCATCGGCACCTTGGCGTCTCGGATGTGCGGCAGCTTCGACCA-CTATCGGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGCA
*
47564028 CCTTGGTGCTGGGATGTGCGA
64 CCTTGGTGCT-GGATGTGCGG
* * * *
47564049 GAGCCTCAAGCCA-CATTGGCACCTTGGTGGCTCGGACGTGCGGGAGCCTCGAGCACCATCGGCA
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
*
47564113 CCTTGGTGCTGGGATGTGGGG
64 CCTTGGTGCT-GGATGTGCGG
* * * * * * * * * * ** *
47564134 GAGGCTCGAGCCGCATCGACACCTTAGTGGCTCAGATTTGTGAGAGACTCGAGCAGTATTTGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47564199 CTTGGTGTTCGGATGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * *
47564219 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGTACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47564284 TTGGTGGCTCGGATGTGCAG
66 TTGGT-GCT-GGATGTGCGG
* *
47564304 GAGCCTCGAGCAGCATCAGG-ACCTTGATGGCAT-GAATGTGCGGGAGCCTCGAGCAGCATCGGC
1 GAGCCTCGAGCAGCATC-GGCACCTTGGT-GC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGGC
* *
47564367 ACCTTGATACTTGGATGTGCGG
63 ACCTTGGTGC-TGGATGTGCGG
* * * * * * *
47564389 GAGCCGCTAGCACCATCAGCACCTTGGCTGCTCAGATGTGCGGCAGCCTCGAGCACCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47564454 CTTGGTGTTGGGATGTACGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * *
47564474 GAGCCTCAAGCCGCATCGTCACCTTGGTGGCTCGGACGTGCGGGAGCCGCGAGCACCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47564539 CTTGGTGCTGGGATGTGGGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * ** *
47564559 GAGGCTCG-GCCGCATCGGCACGTTGGTGGCTCAGATGTGCGGGAGACTCGAGCAGCATTTGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47564623 CTTGGTACTCGGATGTAC-G
65 CTTGGTGCT-GGATGTGCGG
* * *
47564642 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGTACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47564707 TTGGTTGCTCAGATGTG-GG
66 TTGG-TGCT-GGATGTGCGG
* ** * * *
47564726 GAGCCTCGCGCAGTGTCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
47564791 TTGGTGGCTCGGATGTGCGG
66 TTGGT-GCT-GGATGTGCGG
* * * * * * *
47564811 GAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGGGAGACTCGAGCAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47564876 TTGGTGCTCGGAGGTGCGG
66 TTGGTGCT-GGATGTGCGG
* * * *
47564895 GACCCTCGAGCAACATCAGG-ACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCAAT-GGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGC
*
47564958 ACCTTGATGCTGGGATGTGCGG
63 ACCTTGGTGCT-GGATGTGCGG
* * * * * * * *
47564980 CAGCTTCGAGTAGCATCGGCGCCTTAGTG-TTGGATGCGCGGGAGCCTCGAGCTGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47565044 TTGGAGGCTCAGATGTGCGG
66 TTGG-TGCT-GGATGTGCGG
* * * * * * * *
47565064 GAGACTCGAGTAGCA-CTTGTACCTTGGTGTTCGGATGTGCGGGAGCCTCGAGCACCATCGGTAG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47565128 CTTGGTGGCTCAGATGTGC-G
65 CTTGGT-GCT-GGATGTGCGG
* * *
47565148 GAGCCTCG-GCAGCATCGGCACATTGGTGCT-GAGATGTACGGGA-CACTCGAGCAGCATGGGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCG-GATGTGCGGGAGC-CTCGAGCAGCATCGGCA
* * * *
47565210 CCTTGTTGGGTCAGATGTGCAG
64 CCTTGGT-GCT-GGATGTGCGG
* * * * *
47565232 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTCAGATGT--GGGAGCTTC-AGGCCGTATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GCAGCATCGGCAC
* *
47565294 CTTGGTGGCTCGAATGCGCGGGAGCCG
65 CTTGGT-GCT-GGATGTGC----G--G
* * * * * * * *
47565321 AGAGCCTCGAGCACCATCGCCACCTCGGTTGCTCAGATGTGGGGGAGCCT-TACGTAGTATCGGC
1 -GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGA-GCAGCATCGGC
*
47565385 ACCTTGGTGCTTGGATGTGCAG
63 ACCTTGGTGC-TGGATGTGCGG
* * *
47565407 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT-CGAGGAGCCTCGAGTC-GCATCAGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCA
* *
47565470 CCTTGGTGGCTCAGATGTGTGG
64 CCTTGGT-GCT-GGATGTGCGG
* * ** * * * *
47565492 GA-ACTCGAACAGCATTTGTACCTTGGTGCTCAGATGTG-TGGAGCCTCGGGCAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * **
47565555 TTGATGGTGGGATGTATGG
66 TTGGTGCT-GGATGTGCGG
** * *
47565574 GAGCCTCGAGCAGCATCATCACCTTGGTGGCTCGGATGTGCAGGACCCTCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47565639 CTTGGTCCTGGGACGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * * *
47565659 GAGCCTCGAGCAACATCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* * *
47565724 CTTGGTACAGGAATGTGTGG
65 CTTGGTGCTGG-ATGTGCGG
* * **** * * * * * * * ** *
47565744 GAGCCTCGA-CCG-TTTTTTACCTTGGTGGATCAGATGCGCGGAAGTCGCGAGCACCATCGATAA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47565807 CTTGGTGCTGGGATGTGTGG
65 CTTGGTGCT-GGATGTGCGG
* * * * *
47565827 GAGCCTTGAGCACCATCGGCACCTTGGTTGCTCGGATGTGGGGGAGCCTCGCGCAGTATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47565892 CTTGGTACTTGGATGTGCGG
65 CTTGGTGC-TGGATGTGCGG
* * * * *
47565912 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGGGCAGTATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47565977 CTTGGTGCTGGGCTGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * * *
47565997 GAGACTCGAGCAGTATCGGCACCTTGGTGCTCAGAGGTGCGGGACCCTCGAGCAACATCGGGACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47566062 TTGGTGGCTCGGATGTACGG
66 TTGGT-GCT-GGATGTGCGG
* * * *
47566082 GAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGGATGTGCGGCAGCCTCGAGTAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47566147 TTAGTGCTTGGATGCGCGG
66 TTGGTGC-TGGATGTGCGG
* * * * * ** * *
47566166 GAGCCTCGAGCTGCATCGGCACCTTGGAGGCTCAGATATGCGGGAGACTCGAGTTGCA-CTTGTA
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCA
* * *
47566230 CCTTGGTGTTCGGATATGCGA
64 CCTTGGTGCT-GGATGTGCGG
* * * * * * *
47566251 GAGCCTCGAGCACCATCGGTAGCTTGGTGGCTCAGATGGGC-GGAGCCTCGGGTAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47566315 CTTGGTACTGAGATGTACGG
65 CTTGGTGCTG-GATGTGCGG
* * * *
47566335 GACCCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATCGGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47566400 CTTGGTGCTGGGATCTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * * *
47566420 GAGCCTCGAGCAGGATCGGCACCTTGATGGCTTGAATGTGCGGGAGCC-CGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47566484 CTTGGTGCTCAGATGTGTGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * *
47566504 GAGCTTC-AGGCCGTATCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCGAGAGCCTCAAGCACC
1 GAGCCTCGA-GCAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G-GAGCCTCGAGCAGC
* * *
47566568 ATCGCCACCTCGGTTGCTCGGATGTGGGG
57 ATCGGCACCTTGG-TGCT-GGATGTGCGG
* * * * * * * *
47566597 GAGCCTTGCGTAGTATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGTACCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47566662 TTGGTGCTGGGATAT-CGAG
66 TTGGTGCT-GGATGTGCG-G
* * * * * * ** *
47566681 GAGCCTCGA-CTCGTATCAGCACCTTGGTGGCTCAGATGTGTGGGAGACTCGAGCAGCATTTGTA
1 GAGCCTCGAGC-AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
*
47566745 CCTTGGTGCTCGGATGTG-TG
64 CCTTGGTGCT-GGATGTGCGG
* * * * ** *
47566765 GAGCCTCGGGCAGCATCGGCACCTTGATGGTGGGATGTATGGGAGCCTCGAGCAGCATCGTCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47566830 TTGGTGGCTCGAATGTGCAG
66 TTGGT-GCT-GGATGTGCGG
* * * * * * *
47566850 GACCCTCGAGCAGCATCGGCACCTTGGTCCTAGGACGTGCGGGAGCCTCGTGCAACATCGGTACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * *
47566915 TTGATGGCTTGAATGTGCGA
66 TTGGT-GC-TGGATGTGCGG
* * * * * ** **
47566935 GAGCCCCGAGCAGCATCGGCACCTTGGTAC-AGGAATGTGTGGGAGCCTCGAGCCGTTTTTGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47566999 CTTGGTGGATCGGATGCGCGG
65 CTTGGT-GCT-GGATGTGCGG
* * * ** * * * * *
47567020 G-GTCGCGAGCACCATCGATAACTTGGTGCTGGGATGTGTGGGAGCCTTGAGCACCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47567084 TTGGTTGCTCGGATGTGAGA
66 TTGG-TGCT-GGATGTGCGG
* * * * * *
47567104 GAGCCTCGCGCAGTATCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATTGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
47567169 TTGGTGGCTCGGATGTGCGG
66 TTGGT-GCT-GGATGTGCGG
* * * * * * * *
47567189 GAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGGAAGACTCGAGCAGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47567254 TTGGTGCTCGGAGGTGCAG
66 TTGGTGCT-GGATGTGCGG
* * * * *
47567273 GACCCTCGAGCAACATCGGGACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATTGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47567338 CTTGGTACTAGGATGTACGG
65 CTTGGTGCT-GGATGTGCGG
* * * * *
47567358 CAGCATCGAGCAGCATCGGCACCTTGGTGCTAGGAGGTGCGGGAGCCTCGAGCCGCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
***
47567423 TTGGTGGCTTGGATACACGG
66 TTGGT-GC-TGGATGTGCGG
* * * * * * * * * *
47567443 AAGCTTCGAGCACCGTAGGCAGCTTGGTACTGGGATCTGCAGGAGCCTCGAGCA-CAATCGGCAA
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGC-A
* * *
47567507 CTTTGTTGCATGGATGTACGG
64 CCTTGGTGC-TGGATGTGCGG
* * * * * * * *
47567528 GAGTCTCGAGCAGCATCGGTACCTTGATACTTGGATGTGCGGGAGCCGCTAGCACCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47567593 TTGGCGGCTCGGATGTGCGG
66 TTGG-TGCT-GGATGTGCGG
* * * *
47567613 CAGCCTCGAGCA-CTATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCCA-CATTGGCA
1 GAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGCA
* *
47567676 CATTGGTGGCTCGGACGTGCGG
64 CCTTGGT-GCT-GGATGTGCGG
* * * * *
47567698 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGGGATG-CTCGAGCCGCATCGACAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGA-GCCTCGAGCAGCATCGGCAC
* * * *
47567762 CTTAGTGGCTCAGATTTGCGA
65 CTTGGT-GCT-GGATGTGCGG
* * ** * * *
47567783 GAGACTCGAGCAGTATTTGTACCTTGGTGTTCGGATGTGCGGGAGCCTCGAGCACCAT-GGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
47567847 TTGGTGCTGGGATGTGCGG
66 TTGGTGCT-GGATGTGCGG
* *
47567866 GAGCCTCGAGCAGCATCGGTACCTTGGTTGCTCGGATGTGCAGGAGCCTCGAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
47567931 CTTGGTGCTGGGATGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* * *
47567951 GAGCCTCGAGCAGCATCGGGACCTTGATGGCAT-GAATGTGCGGGAGCCTCGAGCAGCATCGGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
* * *
47568015 CCTTGATACTTAGATGTGCGG
64 CCTTGGTGC-TGGATGTGCGG
* * * * * * * * * *
47568036 GAGTCGCTAGCACCATCAGCACCTTGGCGACTCAGATGTGCGGCAGCCTCGAGCACCATCGGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
*
47568101 CTTGGTGCTGGGATGTACGG
65 CTTGGTGCT-GGATGTGCGG
* * * * * * *
47568121 GAGCCTCAAGCCGAATCGACACCTCGGTGGCTCGGACGTGCGGGAGCCGCGAGC-GCCATCGGCA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG-CATCGGCA
*
47568185 CCTTGGTGCTAGGATGTGGGG
64 CCTTGGTGCT-GGATGTGCGG
* * * * * ** *
47568206 GAGGCTCGAGCCGCATCGGCACGTTGGTGGCTCAGATGTGCGGGAGACTCGAGCAGCATTTGTAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
* *
47568271 CTTGGTACTCGGATGTAC-G
65 CTTGGTGCT-GGATGTGCGG
* * * * * * * **
47568290 GAGCCTCGAGCAGCATCGGTACCTTGGTACTGGGATGTACGGGAGCCTCAAGCCGTATCGATACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47568355 TTGGTGGCTCGGACGTGCGG
66 TTGGT-GCT-GGATGTGCGG
* * * * * * * *
47568375 GAGCCGCGAGCACCATCGGCACCTTGGTGCTGGGATGTG-GGTGAGGCTCAAGCCGCATTGACAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG-GAGCCTCGAGCAGCATCGGCAC
* * *
47568439 GTTGCTGGCTTAGATGTGCGG
65 CTTGGT-GC-TGGATGTGCGG
* * * *
47568460 GAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCCGCATCAGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
47568525 CTTGGTGCTGGGATGTGCGG
65 CTTGGTGCT-GGATGTGCGG
* ** * * * * *
47568545 GAGCCTCGAGCATCATCGGGGCCTTGATGGCTTGAATGTGCGGGAGCCCCTAGCAGCATCGGCAC
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAC
**
47568610 CTTGGTGCTCGGATGTGTAG
65 CTTGGTGCT-GGATGTGCGG
* * * * *
47568630 GAGCTTCGAGCCA-TATCGGCACCTTGGTGGCTCCGATGCGCAGGAGTCGAGAGCCTCGAGCACC
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G-GAGCCTCGAGCAGC
* * * *
47568694 ATCGCCACCTCGGTTGCTCGGATATGGGG
57 ATCGGCACCTTGG-TGCT-GGATGTGCGG
* * * * * * * * *
47568723 GAGCCTTGCGTAGTATTGGCACCTTGGTGATTGGATGTGCAGGAGCCTCGAGCACCATCGGCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47568788 TTGCTGCTGG-GGTGTCGGG
66 TTGGTGCTGGATGTG-C-GG
* * * * ** *
47568807 GAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGGGAGACTCGAGCAGCATTTGTA
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCA
*
47568871 CCTTGGTGCTCGGATGTGC-A
64 CCTTGGTGCT-GGATGTGCGG
* * * ** * * *
47568891 GAGCCTCGAGCAGCATCGGCACCTTGATGGTGGGATGTATGGGAGCCTTGAGCAGCACCGTCACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
*
47568956 TTGGTGGCTCGGATGTGCAG
66 TTGGT-GCT-GGATGTGCGG
* * * * * * * * *
47568976 GACCCTCAAGCATCATCGGCACCTTGGTCCTGGGACGTGCGGGAGCCTCAAGCAGTATCGGTACC
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
47569041 TTGATGGCTTGAATGTGCGG
66 TTGGT-GC-TGGATGTGCGG
*
47569061 GAGCCCCGAGCAGCATCGGCACCTTGGT
1 GAGCCTCGAGCAGCATCGGCACCTTGGT
47569089 AATAGAATTG
Statistics
Matches: 5569, Mismatches: 1227, Indels: 617
0.75 0.17 0.08
Matches are distributed among these distances:
67 7 0.00
68 10 0.00
69 1 0.00
70 3 0.00
72 2 0.00
73 5 0.00
74 5 0.00
75 14 0.00
76 17 0.00
77 19 0.00
78 16 0.00
79 14 0.00
80 22 0.00
81 66 0.01
82 175 0.03
83 799 0.14
84 1433 0.26
85 2611 0.47
86 126 0.02
87 9 0.00
88 8 0.00
89 6 0.00
90 24 0.00
91 17 0.00
92 66 0.01
93 94 0.02
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.22
Consensus pattern (83 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
TTGGTGCTGGATGTGCGG
Found at i:47562957 original size:42 final size:42
Alignment explanation
Indices: 47561900--47569088 Score: 5185
Period size: 42 Copynumber: 169.7 Consensus size: 42
47561890 CGGGAGCCGA
* * * * *
47561900 GAGCCACGAGCACCATCGCCACCTCGGTTACTCGGATGTG-GG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * * *
47561942 GAGCCTTGCGTAGTATCGGCACCTTGGTGCTTGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47561984 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT-CGAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-G
* * *
47562026 GAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * *
47562069 GA-ACTCGAGCAGCATTTGTACCTTGGTGCTCGGATGTG-TG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * **
47562109 GAGCCTCGGGCAGCATCGGCACCTTGATGGTGGGATGTATGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47562151 GAGCCTCGAGCAGCATCGTCACCTTGGGGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * *
47562193 AACCCTCGAGCAGCATC-GCACCTTGGTCCTGGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47562234 GAGCCTCGAGCAACATCGGTACCTTGATGGCTTGAATGTGCGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47562277 GAGCCCCGAGCAGCATCGGCACCTTGGTGC-AGGAATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGG
** ** * *
47562319 GAGCCTCGAGC-GTTTTTGCACCTTGGTGGATC-GATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * ** * * *
47562360 GAGTCGCGAGCACCATCGATAACTTGGTGCTGGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47562402 GAGCCTTGAGCACCAT-GGCACCTTGGTTGCTCGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * *
47562444 GAG-CTCGCGCAGTATCGACACCTTGGTACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
*
47562485 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGAT-TGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * *
47562527 GAGCCT-GGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47562568 GAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47562610 GACCCTCGAGCAACATCGGGACCTTGGTGGCTCGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47562653 GAGCCTC-AGCA-CATTGGCACCTT-GTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47562692 CAGCCTCGAGTAGCATCGGCACCTTGGTGCTTGGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47562734 GAGCCTCGAGCTGCATCGG-ACCTTGGAGGCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * *
47562776 GAGACTCGAGTAGCA-CTTGTACCTTGGTGTTCGGATGTGCGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGCGG
* * * *
47562818 GAGCCTCGAGCACCATCGGTAGCTTGGTGGCT-AGATGTGC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * **
47562859 GAGCCTCG-G--GCATCGGCAGCGATGTCGGCGACCTTGG-TG-GCTCA
1 GAGCCTCGAGCAGCATCGGCA-C-CT-T-GGTG--CTCGGATGTGC-GG
* * * * * *
47562903 GATG--T-GCAGGAGCCTCGAGCAGCATCGGTAC-C--TTGGTGCTGG
1 GA-GCCTCG-AGCAGCATCG-GCA-CCTTGGTGCTCGGAT-GTGC-GG
* * *** * * *** * *
47562945 GATG--TGCG-GGAGCCTCGAGCAGGATCG-GCACCTTTATGCTG
1 GA-GCCT-CGAGCAGCATCG-GCACCTTGGTGCTCGGATGTGCGG
*** * ** * * ** * *
47562986 GAATGTGCG-GGAGCCCCGAGCAGCATCGGCACCTTGG-TGCT-C-A
1 GAGCCT-CGAGCAGCATCG-GCA-CCTTGG-TGCTCGGATG-TGCGG
* * * ** * *
47563029 GATG--T-GTAGGA-CTTCAGGC-CGTATCGGCACCTTGG-TG-GCTCG
1 GA-GCCTCG-AGCAGCATC-GGCACCT-T-GG-TGCTCGGATGTGC-GG
** * *
47563071 GATGCGCGGGAGCTGAGAGCCA-CGAGCACCATCGCCACCTCAGTTGCTCGGATGTGGGG
1 GA-GC-CTCGAGC----AG-CATCG-GCACC-T-------T--GGTGCTCGGATGTGCGG
* * * * *
47563130 GAG-CTTGCGTAGTATCGGCACCTTGGTGCT-GGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47563170 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT-CGAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-G
* * *
47563212 GAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * * * *
47563255 GAGACTCGAGCAGCATTTGTACCTTGGTACTCCGATGTG-TG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47563296 GAGCCTCGGGCAGCATCGGTACCTTGATGGCTTGAATGTGCGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47563339 GAGCCCCGAGCAGCATCGGCACCTTGGTGC-AGGAATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGG
* ** ** * *
47563381 GAGCCTCGAGCCGTTTTTGCACCTTGGTGGATCGGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * ** * *
47563424 GAGTCGCGAGCACCATCGATAACTTGGTGCT-GGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47563465 GAGCCTTGAACACCATCGGCACCTTGGTTGCTCGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * *
47563508 GAGCCTCGCGCAGTATCGGCACCTTGGTACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47563550 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCAGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * *
47563593 GAGCCTTG-GCAGTATTGGCACCTTGGTGCTGGGCTGTGC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47563633 GAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
*
47563675 GA--CTCGAGCAGCATCGG-ACCTTGGTGGCTCGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47563715 GAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47563757 CAGCATCGAGCCGCATCGGCACCTTGGTGCT-GCGAGGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCG-GATGTGCGG
* ***
47563799 GAGCCTCGAGCCGCAT-GGCACCTTGGTGGCTCGGATACACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * * *
47563841 AAGCCTCGAGCACCATAGGCAGCTTGGTACT-GGAT-CGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47563881 GAGCCTCGAGCACCATCGGAACTTTGTTGCAT-GGATGTGC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGCGG
* * * *
47563922 GAGTCTCGAGCAGCATCGGCACCTTGATACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47563964 GAGCCGCTAGCACCATCGGCACCTTGGCGTCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGG
* * * * *
47564007 CAGCTTCGACCA-CTATCGGCACCTTGGTGCTGGGATGTGCGA
1 GAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47564049 GAGCCTCAAGCCA-CATTGGCACCTTGGTGGCTCGGACGTGCGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47564092 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * * * *
47564134 GAGGCTCGAGCCGCATCGACACCTTAGTGGCTCAGATTTGTGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * ** * *
47564177 GAGACTCGAGCAGTATTTGTACCTTGGTGTTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47564219 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47564261 GAGCCTCGAGCAGCATCGGTACCTTGGTGGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47564304 GAGCCTCGAGCAGCATCAGG-ACCTTGATGGCAT-GAATGTGCGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGT-GC-TCGGATGTGCGG
* * *
47564347 GAGCCTCGAGCAGCATCGGCACCTTGATACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * *
47564389 GAGCCGCTAGCACCATCAGCACCTTGGCTGCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * *
47564432 CAGCCTCGAGCACCATCGGCACCTTGGTGTTGGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47564474 GAGCCTCAAGCCGCATCGTCACCTTGGTGGCTCGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47564517 GAGCCGCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47564559 GAGGCTCG-GCCGCATCGGCACGTTGGTGGCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * * *
47564601 GAGACTCGAGCAGCATTTGTACCTTGGTACTCGGATGTAC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47564642 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47564684 GAGCCTCGAGCAGCATCGGTACCTTGGTTGCTCAGATGTG-GG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* ** * *
47564726 GAGCCTCGCGCAGTGTCGGCACCTTGGTACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
*
47564768 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * *
47564811 GAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47564853 GAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47564895 GACCCTCGAGCAACATCAGG-ACCTTGGTGGCTCGGATGTACGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGT-GCTCGGATGTGCGG
* * *
47564938 GAGCCTCGAGCAGCAAT-GGGACCTTGATGCTGGGATGTGCGG
1 GAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * * *
47564980 CAGCTTCGAGTAGCATCGGCGCCTTAGTG-TTGGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47565021 GAGCCTCGAGCTGCATCGGCACCTTGGAGGCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * *
47565064 GAGACTCGAGTAGCA-CTTGTACCTTGGTGTTCGGATGTGCGG
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGCGG
* * * *
47565106 GAGCCTCGAGCACCATCGGTAGCTTGGTGGCTCAGATGTGC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47565148 GAGCCTCG-GCAGCATCGGCACATTGGTGCT-GAGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCG-GATGTGCGG
* * * * *
47565189 GA-CACTCGAGCAGCATGGGCACCTTGTTGGGTCAGATGTGCAG
1 GAGC-CTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47565232 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTCAGATGT--GG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * *
47565272 GAGCTTC-AGGCCGTATCGGCACCTTGGTGGCTCGAATGCGCGGGAGCCG
1 GAGCCTCGA-GCAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G
* * * * *
47565321 AGAGCCTCGAGCACCATCGCCACCTCGGTTGCTCAGATGTGGGG
1 -GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * *
47565365 GAGCCT-TACGTAGTATCGGCACCTTGGTGCTTGGATGTGCAG
1 GAGCCTCGA-GCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47565407 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGT-CGAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-G
* * *
47565449 GAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * ** * * *
47565492 GA-ACTCGAACAGCATTTGTACCTTGGTGCTCAGATGTG-TG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * **
47565532 GAGCCTCGGGCAGCATCGGCACCTTGATGGTGGGATGTATGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
** *
47565574 GAGCCTCGAGCAGCATCATCACCTTGGTGGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47565617 GACCCTCGAGCAGCATCGGCACCTTGGTCCTGGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47565659 GAGCCTCGAGCAACATCGGTACCTTGATGGCTTGAATGTGCGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47565702 GAGCCCCGAGCAGCATCGGCACCTTGGTAC-AGGAATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGG
* * **** * * *
47565744 GAGCCTCGA-CCG-TTTTTTACCTTGGTGGATCAGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * ** * * *
47565785 AAGTCGCGAGCACCATCGATAACTTGGTGCTGGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47565827 GAGCCTTGAGCACCATCGGCACCTTGGTTGCTCGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * *
47565870 GAGCCTCGCGCAGTATCGGCACCTTGGTACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
*
47565912 GAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * *
47565955 GAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47565997 GAGACTCGAGCAGTATCGGCACCTTGGTGCTCAGAGGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47566039 GACCCTCGAGCAACATCGGGACCTTGGTGGCTCGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47566082 GAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * *
47566124 CAGCCTCGAGTAGCATCGGCACCTTAGTGCTTGGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47566166 GAGCCTCGAGCTGCATCGGCACCTTGGAGGCTCAGATATGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* ** * * * * *
47566209 GAGACTCGAGTTGCA-CTTGTACCTTGGTGTTCGGATATGCGA
1 GAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGCGG
* * * * *
47566251 GAGCCTCGAGCACCATCGGTAGCTTGGTGGCTCAGATGGGC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47566293 GAGCCTCGGGTAGCATCGGCACCTTGGTACT-GAGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCG-GATGTGCGG
* * *
47566335 GACCCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47566378 GAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATCTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47566420 GAGCCTCGAGCAGGATCGGCACCTTGATGGCTTGAATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47566463 GAGCC-CGAGCAGCATCGGCACCTTGGTGCTCAGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47566504 GAGCTTC-AGGCCGTATCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCG
1 GAGCCTCGA-GCAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G
* * * * *
47566553 AGAGCCTCAAGCACCATCGCCACCTCGGTTGCTCGGATGTGGGG
1 -GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * * *
47566597 GAGCCTTGCGTAGTATCGGCACCTTGGTGCTTGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47566639 GAGCCTCGAGTACCATCGGCACCTTGGTGCTGGGATAT-CGAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-G
* * * * *
47566681 GAGCCTCGA-CTCGTATCAGCACCTTGGTGGCTCAGATGTGTGG
1 GAGCCTCGAGC-AGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * *
47566724 GAGACTCGAGCAGCATTTGTACCTTGGTGCTCGGATGTG-TG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * **
47566765 GAGCCTCGGGCAGCATCGGCACCTTGATGGTGGGATGTATGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47566807 GAGCCTCGAGCAGCATCGTCACCTTGGTGGCTCGAATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47566850 GACCCTCGAGCAGCATCGGCACCTTGGTCCTAGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * * *
47566892 GAGCCTCGTGCAACATCGGTACCTTGATGGCTTGAATGTGCGA
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47566935 GAGCCCCGAGCAGCATCGGCACCTTGGTAC-AGGAATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGG
* ** ** * *
47566977 GAGCCTCGAGCCGTTTTTGCACCTTGGTGGATCGGATGCGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * ** * * *
47567020 G-GTCGCGAGCACCATCGATAACTTGGTGCTGGGATGTGTGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567061 GAGCCTTGAGCACCATCGGCACCTTGGTTGCTCGGATGTGAGA
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * *
47567104 GAGCCTCGCGCAGTATCGGCACCTTGGTACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47567146 GAGCCTCGAGCACCATTGGCACCTTGGTGGCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * *
47567189 GAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGGCTGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567231 AAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567273 GACCCTCGAGCAACATCGGGACCTTGGTGGCTCGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * *
47567316 GAGCCTCGAGCAGCATTGGCACCTTGGTACTAGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567358 CAGCATCGAGCAGCATCGGCACCTTGGTGCTAGGAGGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * ***
47567400 GAGCCTCGAGCCGCATCGGCACCTTGGTGGCTTGGATACACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * * * * * *
47567443 AAGCTTCGAGCACCGTAGGCAGCTTGGTACTGGGATCTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47567485 GAGCCTCGAGCA-CAATCGGCAACTTTGTTGCAT-GGATGTACGG
1 GAGCCTCGAGCAGC-ATCGGC-ACCTTGGTGC-TCGGATGTGCGG
* * * * *
47567528 GAGTCTCGAGCAGCATCGGTACCTTGATACTTGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567570 GAGCCGCTAGCACCATCGGCACCTTGGCGGCTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* *
47567613 CAGCCTCGAGCA-CTATCGGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47567655 GAGCCTCAAGCCA-CATTGGCACATTGGTGGCTCGGACGTGCGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47567698 GAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47567740 GATG-CTCGAGCCGCATCGACACCTTAGTGGCTCAGATTTGCGA
1 GA-GCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * ** * *
47567783 GAGACTCGAGCAGTATTTGTACCTTGGTGTTCGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47567825 GAGCCTCGAGCACCAT-GGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* *
47567866 GAGCCTCGAGCAGCATCGGTACCTTGGTTGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
*
47567909 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * *
47567951 GAGCCTCGAGCAGCATCGGGACCTTGATGGCAT-GAATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GC-TCGGATGTGCGG
* * **
47567994 GAGCCTCGAGCAGCATCGGCACCTTGATACTTAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * * *
47568036 GAGTCGCTAGCACCATCAGCACCTTGGCGACTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGG
* * * * *
47568079 CAGCCTCGAGCACCATCGGTACCTTGGTGCTGGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47568121 GAGCCTCAAGCCGAATCGACACCTCGGTGGCTCGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47568164 GAGCCGCGAGC-GCCATCGGCACCTTGGTGCTAGGATGTGGGG
1 GAGCCTCGAGCAG-CATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47568206 GAGGCTCGAGCCGCATCGGCACGTTGGTGGCTCAGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * * *
47568249 GAGACTCGAGCAGCATTTGTACCTTGGTACTCGGATGTAC-G
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47568290 GAGCCTCGAGCAGCATCGGTACCTTGGTACTGGGATGTACGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * ** *
47568332 GAGCCTCAAGCCGTATCGATACCTTGGTGGCTCGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47568375 GAGCCGCGAGCACCATCGGCACCTTGGTGCTGGGATGTG-GG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * * * **
47568416 TGAGGCTCAAGCCGCATTGACACGTTGCTGGCTTAGATGTGCGG
1 -GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* *
47568460 GAGCCTCGAGCAGCATCAGCACCTTGGTGGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * *
47568503 GAGCCTCGAGCCGCATCAGCACCTTGGTGCTGGGATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* ** * * *
47568545 GAGCCTCGAGCATCATCGGGGCCTTGATGGCTTGAATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * **
47568588 GAGCCCCTAGCAGCATCGGCACCTTGGTGCTCGGATGTGTAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47568630 GAGCTTCGAGCCA-TATCGGCACCTTGGTGGCTCCGATGCGCAGGAGTCG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G
* * * * *
47568679 AGAGCCTCGAGCACCATCGCCACCTCGGTTGCTCGGATATGGGG
1 -GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGG
* * * * * * * *
47568723 GAGCCTTGCGTAGTATTGGCACCTTGGTGATTGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47568765 GAGCCTCGAGCACCATCGGCACCTTGCTGCTGGGGTGT-CGGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGC-GG
* * *
47568807 GAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGG
1 GAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* ** * *
47568850 GAGACTCGAGCAGCATTTGTACCTTGGTGCTCGGATGTGC-A
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * **
47568891 GAGCCTCGAGCAGCATCGGCACCTTGATGGTGGGATGTATGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * *
47568933 GAGCCTTGAGCAGCACCGTCACCTTGGTGGCTCGGATGTGCAG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
* * * * * *
47568976 GACCCTCAAGCATCATCGGCACCTTGGTCCTGGGACGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
* * * * * *
47569018 GAGCCTCAAGCAGTATCGGTACCTTGATGGCTTGAATGTGCGG
1 GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGG
*
47569061 GAGCCCCGAGCAGCATCGGCACCTTGGT
1 GAGCCTCGAGCAGCATCGGCACCTTGGT
47569089 AATAGAATTG
Statistics
Matches: 5555, Mismatches: 1319, Indels: 545
0.75 0.18 0.07
Matches are distributed among these distances:
38 7 0.00
39 29 0.01
40 138 0.02
41 752 0.14
42 2670 0.48
43 1775 0.32
44 32 0.01
45 5 0.00
46 11 0.00
47 7 0.00
49 7 0.00
50 88 0.02
51 13 0.00
52 5 0.00
56 3 0.00
58 6 0.00
59 6 0.00
60 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.22
Consensus pattern (42 bp):
GAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGG
Found at i:47563613 original size:127 final size:126
Alignment explanation
Indices: 47561801--47569088 Score: 5825
Period size: 127 Copynumber: 57.3 Consensus size: 126
47561791 NNNNNNNNGA
* * * * * * *
47561801 ATGTGCGGGAGCCCCGAGCAGCATCGGCACCTTGGTGCTCAGATGTG-TGAAGCTTC-AGGCCGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GCAGC
* * * * *
47561864 ATCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCGAGAGCCACGAGCACCATCGCCACCTCGGTT
65 ATCGGCACCTTGGT-GCTCGGATGTGC----G--G-GAGCCTCGAGCAGCATCGGCACCTTGG-T
*
47561929 ACTCGG
121 GCTCGG
* * * * * * *
47561935 ATGTG-GGGAGCCTTGCGTAGTATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
47561999 TCGGCACCTTGGTGCTGGGATGT-CGAGGAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAG
66 TCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGG
* * ** * * *
47562061 ATGTGTGGGA-ACTCGAGCAGCATTTGTACCTTGGTGCTCGGATGTG-TGGAGCCTCGGGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * ** * *
47562124 TCGGCACCTTGATGGTGGGATGTATGGGAGCCTCGAGCAGCATCGTCACCTTGGGGCTCGG
66 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * *
47562185 ATGTGCAGAACCCTCGAGCAGCATC-GCACCTTGGTCCTGGGACGTGCGGGAGCCTCGAGCAACA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47562249 TCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGCATCGGCACCTTGGTGC-AGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* ** ** * * * * *
47562310 AATGTGTGGGAGCCTCGAGC-GTTTTTGCACCTTGGTGGATC-GATGCGCGGGAGTCGCGAGCAC
1 -ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
** * * * * *
47562373 CATCGATAACTTGGTGCTGGGATGTGTGGGAGCCTTGAGCACCAT-GGCACCTTGGTTGCTCGG
64 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGG
* * * * * * *
47562436 ATGTGGGGGAG-CTCGCGCAGTATCGACACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47562500 TCGGCACCTTGGTGGCTCGGAT-TGCGGGAGCCT-GGGCAGTATTGGCACCTTGGTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * *
47562560 CTGTGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCGGGACCCTCGAGCAACA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47562625 TCGGGACCTTGGTGGCTCGGATGTACGGGAGCCTC-AGCA-CATTGGCACCTT-GTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * *
47562684 ATGTGCGGCAGCCTCGAGTAGCATCGGCACCTTGGTGCTTGGATGCGCGGGAGCCTCGAGCTGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47562749 TCGG-ACCTTGGAGGCTCAGATGTGCGGGAGACTCGAGTAGCA-CTTGTACCTTGGTGTTCGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGG
* * * *
47562810 ATGTGCGGGAGCCTCGAGCACCATCGGTAGCTTGGTGGCT-AGATGTGC-GGAGCCTCGGGCATC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTC--G-A--
* * *
47562873 GGCAGCGATGTCGGCGACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGCATCGGTACCTTG
60 -GCAGC-A--TCGGC-ACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTG
*
47562938 GTGCTGGG
119 GTGCTCGG
* ** *
47562946 ATGTGCGGGAGCCTCGAGCAGGATCGGCACCTTTATGCT-GGAATGTGCGGGAGCCCCGAGCAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGC
* ** * * *
47563010 ATCGGCACCTTGGTGCTCAGATGTGTAGGA-CTTC-AGGCCGTATCGGCACCTTGGTGGCTCGG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GCAGCATCGGCACCTTGGT-GCTCGG
* * * * * * * *
47563072 ATGCGCGGGAGCTGAGAGCCACGAGCACCATCGCCACCTCAGTTGCTCGGATGTGGGGGAG-CTT
1 ATGTGC----G--G-GAGCCTCGAGCAGCATCGGCACCT-TGGTGCTCGGATGTGCGGGAGCCTC
* * * * *
47563136 GCGTAGTATCGGCACCTTGGTGCT-GGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGGTGC
58 GAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC
*
47563200 TGGG
123 TCGG
* * * *
47563204 ATGT-CGAGGAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGGGAGACTCGAGCA
1 ATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
** * * * * * * * * *
47563267 GCATTTGTACCTTGGTACTCCGATGTG-TGGAGCCTCGGGCAGCATCGGTACCTTGATGGCTTGA
63 GCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47563331 ATGTGCGAGAGCCCCGAGCAGCATCGGCACCTTGGTGC-AGGAATGTGTGGGAGCCTCGAGCCGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGC
* ** * * * * * ** *
47563395 TTTTGCACCTTGGTGGATCGGATGCGCGGGAGTCGCGAGCACCATCGATAACTTGGTGCT-GG
65 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * *
47563457 ATGTGTGGGAGCCTTGAACACCATCGGCACCTTGGTTGCTCGGATGTGGGGGAGCCTCGCGCAGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * *
47563522 ATCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCAG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * * *
47563585 ATGTGCAGGAGCCTTG-GCAGTATTGGCACCTTGGTGCTGGGCTGTGC-GGAGACTCGAGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* *
47563648 TCGGCACCTTGGTGCTCGGAGGTGCAGGA--CTCGAGCAGCATCGG-ACCTTGGTGGCTCGG
66 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47563707 ATGTACGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGGATGTGCGGCAGCATCGAGCCGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* *
47563772 TCGGCACCTTGGTGCT-GCGAGGTGCGGGAGCCTCGAGCCGCAT-GGCACCTTGGTGGCTCGG
66 TCGGCACCTTGGTGCTCG-GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
*** * * * * * * * *
47563833 ATACACGGAAGCCTCGAGCACCATAGGCAGCTTGGTACT-GGAT-CGCAGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47563896 TCGGAACTTTGTTGCAT-GGATGTGC-GGAGTCTCGAGCAGCATCGGCACCTTGATACTTGG
66 TCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * *
47563956 ATGTGCGGGAGCCGCTAGCACCATCGGCACCTTGGCGTCTCGGATGTGCGGCAGCTTCGACCA-C
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGC
* * * *
47564020 TATCGGCACCTTGGTGCTGGGATGTGCGAGAGCCTCAAGCCA-CATTGGCACCTTGGTGGCTCGG
65 -ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47564084 ACGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGGGGGAGGCTCGAGCCGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * * * ** * *
47564149 TCGACACCTTAGTGGCTCAGATTTGTGAGAGACTCGAGCAGTATTTGTACCTTGGTGTTCGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* *
47564211 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47564276 TCGGTACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCAGG-ACCTTGATGGCAT-GA
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGT-GC-TCGG
* * * * * *
47564339 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGATACTTGGATGTGCGGGAGCCGCTAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * *
47564404 TCAGCACCTTGGCTGCTCAGATGTGCGGCAGCCTCGAGCACCATCGGCACCTTGGTGTTGGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * *
47564466 ATGTACGGGAGCCTCAAGCCGCATCGTCACCTTGGTGGCTCGGACGTGCGGGAGCCGCGAGCACC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * *
47564531 ATCGGCACCTTGGTGCTGGGATGTGGGGGAGGCTCG-GCCGCATCGGCACGTTGGTGGCTCAG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* ** * * *
47564593 ATGTGCGGGAGACTCGAGCAGCATTTGTACCTTGGTACTCGGATGTAC-GGAGCCTCGAGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47564657 TCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTTGCTCAG
66 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGG
* ** * * *
47564719 ATGTG-GGGAGCCTCGCGCAGTGTCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * *
47564783 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * *
47564845 CTGTGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTCGGAGGTGCGGGACCCTCGAGCAACA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47564910 TCAGG-ACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCAAT-GGGACCTTGATGCTGGG
66 TC-GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGG
* * * * * * * *
47564972 ATGTGCGGCAGCTTCGAGTAGCATCGGCGCCTTAGTG-TTGGATGCGCGGGAGCCTCGAGCTGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47565036 TCGGCACCTTGGAGGCTCAGATGTGCGGGAGACTCGAGTAGCA-CTTGTACCTTGGTGTTCGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGG
* * * *
47565098 ATGTGCGGGAGCCTCGAGCACCATCGGTAGCTTGGTGGCTCAGATGTGC-GGAGCCTCG-GCAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * *
47565161 ATCGGCACATTGGTGCT-GAGATGTACGGGA-CACTCGAGCAGCATGGGCACCTTGTTGGGTCAG
65 ATCGGCACCTTGGTGCTCG-GATGTGCGGGAGC-CTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47565224 ATGTGCAGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTCAGATGT--GGGAGCTTC-AGGCCGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GCAGC
* * * * *
47565286 ATCGGCACCTTGGTGGCTCGAATGCGCGGGAGCCGAGAGCCTCGAGCACCATCGCCACCTCGGTT
65 ATCGGCACCTTGGT-GCTCGGATGTGC----G--G-GAGCCTCGAGCAGCATCGGCACCTTGG-T
*
47565351 GCTCAG
121 GCTCGG
* * * * * * *
47565357 ATGTGGGGGAGCCT-TACGTAGTATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGAGCACC
1 ATGTGCGGGAGCCTCGA-GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * *
47565421 ATCGGCACCTTGGTGCTGGGATGT-CGAGGAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAG
65 ATCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGG
* * * ** * * * *
47565484 ATGTGTGGGA-ACTCGAACAGCATTTGTACCTTGGTGCTCAGATGTG-TGGAGCCTCGGGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * ** **
47565547 TCGGCACCTTGATGGTGGGATGTATGGGAGCCTCGAGCAGCATCATCACCTTGGTGGCTCGG
66 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47565609 ATGTGCAGGACCCTCGAGCAGCATCGGCACCTTGGTCCTGGGACGTGCGGGAGCCTCGAGCAACA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * * *
47565674 TCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGCATCGGCACCTTGGTAC-AGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * **** * * * * * * *
47565735 AATGTGTGGGAGCCTCGA-CCG-TTTTTTACCTTGGTGGATCAGATGCGCGGAAGTCGCGAGCAC
1 -ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
** * * * * *
47565798 CATCGATAACTTGGTGCTGGGATGTGTGGGAGCCTTGAGCACCATCGGCACCTTGGTTGCTCGG
64 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGG
* * * * * *
47565862 ATGTGGGGGAGCCTCGCGCAGTATCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * *
47565927 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGGGCAGTATTGGCACCTTGGTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * *
47565989 CTGTGCGGGAGACTCGAGCAGTATCGGCACCTTGGTGCTCAGAGGTGCGGGACCCTCGAGCAACA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47566054 TCGGGACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * *
47566116 ATGTGCGGCAGCCTCGAGTAGCATCGGCACCTTAGTGCTTGGATGCGCGGGAGCCTCGAGCTGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * ** * * *
47566181 TCGGCACCTTGGAGGCTCAGATATGCGGGAGACTCGAGTTGCA-CTTGTACCTTGGTGTTCGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGG
* * * * * * * * *
47566243 ATATGCGAGAGCCTCGAGCACCATCGGTAGCTTGGTGGCTCAGATGGGC-GGAGCCTCGGGTAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * *
47566307 ATCGGCACCTTGGTACT-GAGATGTACGGGACCCTCGAGCAGCATCGGCACCTTGGTGGCTCAG
65 ATCGGCACCTTGGTGCTCG-GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * *
47566370 ATGTGCAGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTGGGATCTGCGGGAGCCTCGAGCAGGA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * *
47566435 TCGGCACCTTGATGGCTTGAATGTGCGGGAGCC-CGAGCAGCATCGGCACCTTGGTGCTCAG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * *
47566496 ATGTGTGGGAGCTTC-AGGCCGTATCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCGAGAGCCT
1 ATGTGCGGGAGCCTCGA-GCAGCATCGGCACCTTGGT-GCTCGGATGTGC----G--G-GAGCCT
* * * * * * * * *
47566560 CAAGCACCATCGCCACCTCGGTTGCTCGGATGTGGGGGAGCCTTGCGTAGTATCGGCACCTTGGT
57 CGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT
*
47566625 GCTTGG
121 GCTCGG
* * * * * *
47566631 ATGTGCAGGAGCCTCGAGTACCATCGGCACCTTGGTGCTGGGATAT-CGAGGAGCCTCGA-CTCG
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCG-GGAGCCTCGAGC-AG
* * * * * ** *
47566694 TATCAGCACCTTGGTGGCTCAGATGTGTGGGAGACTCGAGCAGCATTTGTACCTTGGTGCTCGG
64 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * **
47566758 ATGTG-TGGAGCCTCGGGCAGCATCGGCACCTTGATGGTGGGATGTATGGGAGCCTCGAGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * *
47566822 TCGTCACCTTGGTGGCTCGAATGTGCAGGACCCTCGAGCAGCATCGGCACCTTGGTCCTAGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * * * *
47566884 ACGTGCGGGAGCCTCGTGCAACATCGGTACCTTGATGGCTTGAATGTGCGAGAGCCCCGAGCAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * ** ** *
47566949 ATCGGCACCTTGGTAC-AGGAATGTGTGGGAGCCTCGAGCCGTTTTTGCACCTTGGTGGATCGG
65 ATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * ** * * * * *
47567012 ATGCGCGGG-GTCGCGAGCACCATCGATAACTTGGTGCTGGGATGTGTGGGAGCCTTGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * *
47567076 TCGGCACCTTGGTTGCTCGGATGTGAGAGAGCCTCGCGCAGTATCGGCACCTTGGTACTTGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * *
47567138 ATGTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGGGCAGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * *
47567203 ATTGGCACCTTGGTGCTGGGCTGTGCGGAAGACTCGAGCAGCATCGGCACCTTGGTGCTCGG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * *
47567265 AGGTGCAGGACCCTCGAGCAACATCGGGACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * * *
47567330 ATTGGCACCTTGGTACTAGGATGTACGGCAGCATCGAGCAGCATCGGCACCTTGGTGCTAGG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * *** * * *
47567392 AGGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTTGGATACACGGAAGCTTCGAGCACC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * * * * *
47567457 GTAGGCAGCTTGGTACTGGGATCTGCAGGAGCCTCGAGCA-CAATCGGCAACTTTGTTGCAT-GG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGC-ACCTTGGTGC-TCGG
* * * * * * * * *
47567520 ATGTACGGGAGTCTCGAGCAGCATCGGTACCTTGATACTTGGATGTGCGGGAGCCGCTAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
47567585 TCGGCACCTTGGCGGCTCGGATGTGCGGCAGCCTCGAGCA-CTATCGGCACCTTGGTGCTGGG
66 TCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTCGG
* * * * *
47567647 ATGTGCGGGAGCCTCAAGCCA-CATTGGCACATTGGTGGCTCGGACGTGCGGGAGCCTCGAGCAC
1 ATGTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * * *
47567711 CATCGGCACCTTGGTGCTGGGATGTGGGGGATG-CTCGAGCCGCATCGACACCTTAGTGGCTCAG
64 CATCGGCACCTTGGTGCTCGGATGTGCGGGA-GCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * ** * * *
47567775 ATTTGCGAGAGACTCGAGCAGTATTTGTACCTTGGTGTTCGGATGTGCGGGAGCCTCGAGCACCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* *
47567840 T-GGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTTGCTCGG
66 TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGG
* *
47567901 ATGTGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * **
47567966 TCGGGACCTTGATGGCAT-GAATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGATACTTAG
66 TCGGCACCTTGGT-GC-TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * * * *
47568028 ATGTGCGGGAGTCGCTAGCACCATCAGCACCTTGGCGACTCAGATGTGCGGCAGCCTCGAGCACC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * * * *
47568093 ATCGGTACCTTGGTGCTGGGATGTACGGGAGCCTCAAGCCGAATCGACACCTCGGTGGCTCGG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
* * * * * *
47568156 ACGTGCGGGAGCCGCGAGC-GCCATCGGCACCTTGGTGCTAGGATGTGGGGGAGGCTCGAGCCGC
1 ATGTGCGGGAGCCTCGAGCAG-CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * ** * *
47568220 ATCGGCACGTTGGTGGCTCAGATGTGCGGGAGACTCGAGCAGCATTTGTACCTTGGTACTCGG
65 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * * *
47568283 ATGTAC-GGAGCCTCGAGCAGCATCGGTACCTTGGTACTGGGATGTACGGGAGCCTCAAGCCGTA
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
** * * * *
47568347 TCGATACCTTGGTGGCTCGGACGTGCGGGAGCCGCGAGCACCATCGGCACCTTGGTGCTGGG
66 TCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * * * * * * **
47568409 ATGTG-GGTGAGGCTCAAGCCGCATTGACACGTTGCTGGCTTAGATGTGCGGGAGCCTCGAGCAG
1 ATGTGCGG-GAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAG
* * * * *
47568473 CATCAGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCCGCATCAGCACCTTGGTGCTGGG
64 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* ** * * * * *
47568537 ATGTGCGGGAGCCTCGAGCATCATCGGGGCCTTGATGGCTTGAATGTGCGGGAGCCCCTAGCAGC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
** * * *
47568602 ATCGGCACCTTGGTGCTCGGATGTGTAGGAGCTTCGAGCCA-TATCGGCACCTTGGTGGCTCCG
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGG
* * * * * * *
47568665 ATGCGCAGGAGTCGAGAGCCTCGAGCACCATCGCCACCTCGGTTGCTCGGATATGGGGGAGCCTT
1 ATGTGC----G--G-GAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTC
* * * * * * * * *
47568730 GCGTAGTATTGGCACCTTGGTGATTGGATGTGCAGGAGCCTCGAGCACCATCGGCACCTTGCTGC
58 GAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC
*
47568795 TGGG
123 TCGG
* * * * *
47568799 GTGT-CGGGGAGCCTCGAGTC-GCATCAGCACCTTGGTGGCTCAGATGTGTGGGAGACTCGAGCA
1 ATGTGC-GGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
** * * * * *
47568862 GCATTTGTACCTTGGTGCTCGGATGTGC-AGAGCCTCGAGCAGCATCGGCACCTTGATGGTGGG
63 GCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
** * * * * * * *
47568925 ATGTATGGGAGCCTTGAGCAGCACCGTCACCTTGGTGGCTCGGATGTGCAGGACCCTCAAGCATC
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGC
* * * * * * * * *
47568990 ATCGGCACCTTGGTCCTGGGACGTGCGGGAGCCTCAAGCAGTATCGGTACCTTGATGGCTTGA
65 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGG
*
47569053 ATGTGCGGGAGCCCCGAGCAGCATCGGCACCTTGGT
1 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT
47569089 AATAGAATTG
Statistics
Matches: 5703, Mismatches: 1228, Indels: 452
0.77 0.17 0.06
Matches are distributed among these distances:
122 27 0.00
123 115 0.02
124 231 0.04
125 659 0.12
126 1352 0.24
127 1829 0.32
128 905 0.16
129 9 0.00
130 4 0.00
131 11 0.00
132 24 0.00
133 168 0.03
134 109 0.02
135 166 0.03
136 86 0.02
137 8 0.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (126 bp):
ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCA
TCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
Found at i:47570104 original size:42 final size:42
Alignment explanation
Indices: 47570041--47570163 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 42
47570031 GGCTCCTACT
* * * * *
47570041 TGTGGGGGAGCCTCGTGCACCATCGG-TATCTTTGTGCTCGGA
1 TGTGTGGGAGCCTC-AGCACCATCGGCAACCTTGGTGCTCGGA
*
47570083 TGTGTGGGAGCCTCAGCCACCATCGGCAACCTTGGTGCTTGGA
1 TGTGTGGGAGCCTCAG-CACCATCGGCAACCTTGGTGCTCGGA
* *
47570126 TGTGTGGGGGCCTCGAGCACCATCGAC-ACCTTGGTGCT
1 TGTGTGGGAGCCTC-AGCACCATCGGCAACCTTGGTGCT
47570164 AGGGTTTGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 33 0.47
43 34 0.49
44 2 0.03
ACGTcount: A:0.14, C:0.27, G:0.34, T:0.25
Consensus pattern (42 bp):
TGTGTGGGAGCCTCAGCACCATCGGCAACCTTGGTGCTCGGA
Found at i:47570139 original size:43 final size:42
Alignment explanation
Indices: 47570041--47570189 Score: 147
Period size: 42 Copynumber: 3.5 Consensus size: 42
47570031 GGCTCCTACT
* * ** * *
47570041 TGTGGGGGAGCCTCGTGCACCATCGGTATCTTTGTGCTCGGA
1 TGTGTGGGAGCCTCGAGCACCATCGACACCTTGGTGCTCGGA
* *
47570083 TGTGTGGGAGCCTC-AGCCACCATCGGCAACCTTGGTGCTTGGA
1 TGTGTGGGAGCCTCGAG-CACCATCGAC-ACCTTGGTGCTCGGA
* * *
47570126 TGTGTGGGGGCCTCGAGCACCATCGACACCTTGGTGCTAGGG
1 TGTGTGGGAGCCTCGAGCACCATCGACACCTTGGTGCTCGGA
* * *
47570168 TTTGCGGAAGCCTCGAGCACCA
1 TGTGTGGGAGCCTCGAGCACCA
47570190 AAGCTAAAGT
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 53 0.59
43 34 0.38
44 2 0.02
ACGTcount: A:0.15, C:0.27, G:0.34, T:0.23
Consensus pattern (42 bp):
TGTGTGGGAGCCTCGAGCACCATCGACACCTTGGTGCTCGGA
Found at i:47570464 original size:23 final size:24
Alignment explanation
Indices: 47570401--47570474 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
47570391 GTTAGGTTCG
47570401 CGGTGGTGCTCCGGCGATCCATCC
1 CGGTGGTGCTCCGGCGATCCATCC
* *
47570425 CGGTAGTGCTCCAGCGATCCA-CC
1 CGGTGGTGCTCCGGCGATCCATCC
* *
47570448 CGGTGGCGCTTCGGCGATCCATCC
1 CGGTGGTGCTCCGGCGATCCATCC
47570472 CGG
1 CGG
47570475 CATATAGAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
23 19 0.44
24 24 0.56
ACGTcount: A:0.11, C:0.38, G:0.32, T:0.19
Consensus pattern (24 bp):
CGGTGGTGCTCCGGCGATCCATCC
Found at i:47570621 original size:43 final size:43
Alignment explanation
Indices: 47570570--47573116 Score: 2788
Period size: 43 Copynumber: 59.8 Consensus size: 43
47570560 GGAGCACATG
* * *
47570570 GCAGCATCGGCACCTTGGTAGCTCGGATGTGCGGGGGCCTTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47570613 GCACCATCGGCACCTTGGT-GCTTGGATGTGCGAGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * ** * *
47570655 CCACCATCGGCACCTTGTTGGCTCCAATGTGCAGGAGCCTCAA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47570698 GCAGCATTGGCACCTTGGTGG-TTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47570740 GCAGAACCGGCACCTTGGTGGCTCGGATGTGCAGGATCTTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47570783 GGAGCATCAGCACCTTAGT-GCTGGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47570825 GCCGCATCGGCACCTTCGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47570868 GCGGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47570910 CCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47570953 GCAGCATCGGCAACTTGGT-GCTTGGATATGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GA
* * * * *
47570995 CCACCATCGGCACCTTTGT-GCTGGGATGGGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** * * *
47571037 GCAGCATCGATACCATGGTGGCTCGAATGTGCGGGGGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571080 GCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47571122 GCACCATCGACACCTTGGTGGCTCGAATGTGCAGGAGCCTCAA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * ** *
47571165 GCAGTATCGGTACCTTGGTGGCTTTGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** * * ** *
47571208 GCAAAACCGGTACCTTGGTGGCTCGGATGTGCGAAAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571251 GCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47571294 GCGGCATCGGCGCCTTGGT-GCTTGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47571336 CCACCGTCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571379 GCAGCATTGGAACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
47571422 GCAGAACCGACACCTTGTTGGCTCGGATGTGCAGGATCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47571465 GGAGCATCAGCACCTTGGT-GCTAGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** *
47571507 GCCTCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47571550 GCGGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571592 TCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571635 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCAGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GA
* * * *
47571677 CCACCATCGGCACCTTTGT-GCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** *
47571719 GCAGCATCGATACCTTGGTGGCTCGAATGTGCGGG-GCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47571761 GCACCATCGGCACCTTGGT-GCTTGGCTGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571803 GCACCATCGGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47571846 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
47571889 GCA-AAACTGGTACCTTGGTGGCTTGGATGTCCGAGGATCCTCGA
1 GCAGCATC-GGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGA
* * * ** *
47571933 GGAGCATCGGCACCTTGGT-GCTGGGATGTACGAAAGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
*
47571975 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47572018 GCGGCATCGGCACCTTGGT-ACTTGGATGTGCTGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
47572060 CCACCATCGGTACCTTTGTGGCTCCGATGTGCGGGAGCCTCTA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572103 GCAGCATTGGAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
47572145 GCAGAACCGACACCTTGGTGGCTCGGATGTGCAGGATCCTTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47572188 GGAGCATCAGCACCTTGGT-GCTGGGATGTGCGGGCGCCCCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47572230 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572273 GCGGCATCAGCACCTTGGTGG-TTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572315 CCACCATCGGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572358 GCAACATCGGCACCTTGGT-GCTTGGATATGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GA
* * * * *
47572400 CCACCATCGGCACCTTTGT-GCTGGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47572442 GCAGCATCAGCACCTTTGT-GCTGGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47572484 GCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572527 GCAGTATTGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** * * * *
47572570 GCAAAACCGGTACCTTGGTGGCTCAGG-TGTGCGAGGATCATCGA
1 GCAGCATCGGCACCTTGGTGGCTC-GGATGTGCG-GGAGCCTCGA
* * * *
47572614 GGAGCATCGGCACCTTGGTGGCTCGGATGTGCAGAACCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572657 CCAGCATCGGCGCCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572699 CCACCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
47572742 GCACCATCGGTACCTTGGT-GCTTGGTTGTGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GA
* * *
47572784 CCACCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** * *
47572826 GCAGCATCGGCACCTCAGT-GCTGGGATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
** *
47572868 GCAGCATCAACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572911 GCAGCATCTGCACCTTGGT-GCTGGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572953 CCAGCATCGGCACATTGGTGGCTCGGATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47572996 CCAGCATCGGCACCTTGGGGGCTCTGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47573038 GAAACCGTTGGCAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * **
47573082 GCACCATCGGCACCTTGGTGCCAGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGG
47573117 CTAAAGAAAA
Statistics
Matches: 2088, Mismatches: 377, Indels: 78
0.82 0.15 0.03
Matches are distributed among these distances:
41 16 0.01
42 921 0.44
43 1086 0.52
44 63 0.03
45 2 0.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:47570685 original size:85 final size:85
Alignment explanation
Indices: 47570570--47573116 Score: 2744
Period size: 85 Copynumber: 29.9 Consensus size: 85
47570560 GGAGCACATG
* * * *
47570570 GCAGCATCGGCACCTTGGTAGCTCGGATGTGCGGGGGCCTTGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47570635 TGGATGTGCGAGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * ** * * * *
47570655 CCACCATCGGCACCTTGTTGGCTCCAATGTGCAGGAGCCTCAAGCAGCATTGGCACCTTGGTGGT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
47570720 TGGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * * * * *
47570740 GCAGAACCGGCACCTTGGTGGCTCGGATGTGCAGGATCTTCGAGGAGCATCAGCACCTTAGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47570805 GGGATGTGCGGGAGCCCCGA
66 CGGATGTGCGGGAGCCTCGA
* * *
47570825 GCCGCATCGGCACCTTCGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
47570890 TGGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * *
47570910 CCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCAACTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47570975 TGGATATGCGGGAGCC-CTGA
66 CGGATGTGCGGGAGCCTC-GA
* * * * * ** *
47570995 CCACCATCGGCACCTTTGT-GCTGGGATGGGCGGGAGCCTCGAGCAGCATCGATACCATGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* *
47571059 TCGAATGTGCGGGGGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * *
47571080 GCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* * *
47571144 TCGAATGTGCAGGAGCCTCAA
65 TCGGATGTGCGGGAGCCTCGA
* * ** * ** * *
47571165 GCAGTATCGGTACCTTGGTGGCTTTGATGTGTGGGAGCCTCGAGCAAAACCGGTACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
** *
47571230 TCGGATGTGCGAAAGCCCCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * *
47571251 GCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCGCCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47571316 TGGATGTGTGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * * *
47571336 CCACCGTCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAGCATTGGAACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
47571401 TCGGATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * * * *
47571422 GCAGAACCGACACCTTGTTGGCTCGGATGTGCAGGATCCTCGAGGAGCATCAGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47571487 AGGATGTGCGGGAGCCCCGA
66 CGGATGTGCGGGAGCCTCGA
** * *
47571507 GCCTCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47571572 TGGATGTGCGGGAGCCTTGA
66 CGGATGTGCGGGAGCCTCGA
* *
47571592 TCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47571657 TGGATGTGCAGGAGCC-CTGA
66 CGGATGTGCGGGAGCCTC-GA
* * * * **
47571677 CCACCATCGGCACCTTTGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATCGATACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
*
47571741 TCGAATGTGCGGG-GCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * *
47571761 GCACCATCGGCACCTTGGT-GCTTGGCTGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
*
47571825 TCGGATGTGCAGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
47571846 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCA-AAACTGGTACCTTGGTGG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGT-G
* * *
47571910 CTTGGATGTCCGAGGATCCTCGA
64 CTCGGATGTGCG-GGAGCCTCGA
* * * ** * *
47571933 GGAGCATCGGCACCTTGGT-GCTGGGATGTACGAAAGCCCCGAGCCGCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
47571997 TCGGATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * * * *
47572018 GCGGCATCGGCACCTTGGT-ACTTGGATGTGCTGGAGCCTCGACCACCATCGGTACCTTTGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* *
47572082 TCCGATGTGCGGGAGCCTCTA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * *
47572103 GCAGCATTGGAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* * *
47572167 TCGGATGTGCAGGATCCTTGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * *
47572188 GGAGCATCAGCACCTTGGT-GCTGGGATGTGCGGGCGCCCCGAGCCGCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
*
47572252 TCGGATGTGCGGGAGCCTCAA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
47572273 GCGGCATCAGCACCTTGGTGG-TTGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
*
47572337 TCGAATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * *
47572358 GCAACATCGGCACCTTGGT-GCTTGGATATGCGGGAGCC-CTGACCACCATCGGCACCTTTGTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GAGCAGCATCGGCACCTTGGTGC
* *
47572421 TGGGATGTGTGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
47572442 GCAGCATCAGCACCTTTGT-GCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
*
47572506 TCGGATGTGCGGGAGCCTCAA
65 TCGGATGTGCGGGAGCCTCGA
* * * ** * *
47572527 GCAGTATTGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAACCGGTACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GC
* *
47572592 TCAGG-TGTGCGAGGATCATCGA
65 TC-GGATGTGCG-GGAGCCTCGA
* * * * * *
47572614 GGAGCATCGGCACCTTGGTGGCTCGGATGTGCAGAACCCTCGACCAGCATCGGCGCCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
*
47572679 TGGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * *
47572699 CCACCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47572764 TGGTTGTGCGGGAGCC-CTGA
66 CGGATGTGCGGGAGCCTC-GA
* * * **
47572784 CCACCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTCAGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47572848 GGGATGTGCAGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
** * *
47572868 GCAGCATCAACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* *
47572933 GGGATGTGTGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * * * *
47572953 CCAGCATCGGCACATTGGTGGCTCGGATGTGCAGGAGCCTCGACCAGCATCGGCACCTTGGGGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGC
*
47573018 TCTGATGTGCGGGAGCCTCG-
65 TCGGATGTGCGGGAGCCTCGA
* * * * * *
47573038 GAAACCGTTGGCAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG
1 G-CAGCATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG
47573102 C-CAGGGATGTGCGGG
64 CTC--GGATGTGCGGG
47573117 CTAAAGAAAA
Statistics
Matches: 2069, Mismatches: 363, Indels: 59
0.83 0.15 0.02
Matches are distributed among these distances:
84 294 0.14
85 1295 0.63
86 388 0.19
87 92 0.04
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
CGGATGTGCGGGAGCCTCGA
Found at i:47571903 original size:681 final size:681
Alignment explanation
Indices: 47570572--47573101 Score: 3283
Period size: 681 Copynumber: 3.7 Consensus size: 681
47570562 AGCACATGGC
* ** * *
47570572 AGCATCGGCACCTTGGTAGCTCGGATGTGCGGGGGCCTTGAGCACCATCGGCACCTTGGTGCTTG
1 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
* * * * * *
47570637 GATGTGCGAGAGCCTCGACCACCATCGGCACCTTGTTGGCTCCAATGTGCAGGAGCCTCAAGCAG
66 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAC
* * * *
47570702 CATTGGCACCTTGGTGG-TTGGATGTGCGGGAGCCTCGAGCAGAACCGGCACCTTGGTGGCTCGG
131 CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGT-GCTCGG
* * * * *
47570766 ATGTGCAGGATCTTCGAGGAGCATCAGCACCTTAGTGCTGGGATGTGCGGGAGCCCCGAGCCGCA
195 ATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGCAGCA
* *
47570831 TCGGCACCTTCGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATG
260 TCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATG
*
47570896 TGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATC
325 TGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATC
* * * *
47570961 GGCAACTTGGTGCTTGGATATGCGGGAGCCCTGACCACCATCGGCACCTTTGTGCTGGGATGGGC
390 GGCACCTTGGTGCTTGGATGTGCGGGAGCCCTGACCACCATCGGCACCTTGGTGCTGGGATGTGC
* * *
47571026 GGGAGCCTCGAGCAGCATCGATACCATGGTGGCTCGAATGTGCGGGGGCCTCGAGCACCATCGGC
455 GGGAGCCTCGAGCACCATCGACACCTTGGTGGCTCGAATGTGC-GGGGCCTCGAGCACCATCGGC
* *
47571091 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGGCTCGAATGTGCAG
519 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCAG
** *
47571156 GAGCCTCAAGCAGTATCGGTACCTTGGTGGCTTTGATGTGTGGGAGCCTCGAGCAAAACCGGTAC
584 GAGCCTCAAGCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAACCGGTAC
* * * *
47571221 CTTGGTGGCTCGGATGTGCGA-AAGCCCCGAGC
649 CTTGGTGGCTCGGATGTGCGAGGATCCTCGAGG
* * * * *
47571253 CGCATCGACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCGCCTTGGTGCTTG
1 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
* * *
47571318 GATGTGTGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAG
66 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAC
* * *
47571383 CATTGGAACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGTTGGCTCGG
131 CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGT-GCTCGG
* * * * * **
47571448 ATGTGCAGGATCCTCGAGGAGCATCAGCACCTTGGTGCTAGGATGTGCGGGAGCCCCGAGCCTCA
195 ATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGCAGCA
* *
47571513 TCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATG
260 TCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATG
* * *
47571578 TGCGGGAGCCTTGATCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATC
325 TGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATC
* *
47571643 GGCACCTTGGTGCTTGGATGTGCAGGAGCCCTGACCACCATCGGCACCTTTGTGCTGGGATGTGC
390 GGCACCTTGGTGCTTGGATGTGCGGGAGCCCTGACCACCATCGGCACCTTGGTGCTGGGATGTGC
* *
47571708 GGGAGCCTCGAGCAGCATCGATACCTTGGTGGCTCGAATGTGCGGGGCCTCGAGCACCATCGGCA
455 GGGAGCCTCGAGCACCATCGACACCTTGGTGGCTCGAATGTGCGGGGCCTCGAGCACCATCGGCA
*
47571773 CCTTGGTGCTTGGCTGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCAGG
520 CCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCAGG
* *
47571838 AGCCTCGAGCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAACTGGTACC
585 AGCCTCAAGCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAACCGGTACC
* *
47571903 TTGGTGGCTTGGATGTCCGAGGATCCTCGAGG
650 TTGGTGGCTCGGATGTGCGAGGATCCTCGAGG
* * * * * *
47571935 AGCATCGGCACCTTGGT-GCTGGGATGTACGAAAGCCCCGAGCCGCATCGGCACCTTGGTGGCTC
1 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCAGCATCGGCACCTTGGT-GCTT
* ** * ** * *
47571999 GGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGT-ACTTGGATGTGCTGGAGCCTCGACCA
65 GGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCA
* * * *** *
47572063 CCATCGGTACCTTTGTGGCTCCGATGTGCGGGAGCCTCTAGCAGCATTGGA-ACCTTGGTGCTTG
130 CCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG-AACCGACACCTTGGTGCTCG
* * * * * * ** *
47572127 GATGTGCGGGAGCCTCGAGCAG-AACCGACACCTTGGTGGCTCGGATGTGCAGGATCCTTGAGGA
194 GATGTGCAGGAGCCTCGAGCAGCATCAG-CACCTTAGT-GCTGGGATGTGCAGGAGCCCCGAGCA
* * * * *
47572191 GCATCAGCACCTTGGT-GCTGGGATGTGCGGGCGCCCCGAGCCGCATCGGCACCTTGGTGGCTCG
257 GCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGT-GCTTG
* * ** * * *
47572255 GATGTGCGGGAGCCTCAAGCGGCATCAGCACCTTGGTGG-TTGGATGTGCGGGAGCCTCGACCAC
321 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAG
* * * * *
47572319 CATCGGCACCTTGGTGGCTCGAATGTGCGGGAG-CCTCGAGCAACATCGGCACCTTGGTGCTTGG
386 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCCT-GACCACCATCGGCACCTTGGTGCTGGG
* * * * * * * *
47572383 ATATGCGGGAGCC-CTGACCACCATCGGCACCTTTGT-GCTGGGATGTGTGGGAGCCTCGAGCAG
449 ATGTGCGGGAGCCTC-GAGCACCATCGACACCTTGGTGGCTCGAATGTGCGGG-GCCTCGAGCAC
* * * *
47572446 CATCAGCACCTTTGTGCTGGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGA
512 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGA
* *
47572511 TGTGCGGGAGCCTCAAGCAGTATTGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAA
577 TGTGCAGGAGCCTCAAGCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAA
*
47572576 CCGGTACCTTGGTGGCTCAGG-TGTGCGAGGATCATCGAGG
642 CCGGTACCTTGGTGGCTC-GGATGTGCGAGGATCCTCGAGG
* * * *
47572616 AGCATCGGCACCTTGGTGGCTCGGATGTGCAGAACCCTCGACCAGCATCGGCGCCTTGGTGCTTG
1 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
* *
47572681 GATGTGCGGGAGCCTCGACCACCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
66 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAC
* * * ** * * *
47572746 CATCGGTACCTTGGT-GCTTGGTTGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCTGGG
131 CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GAGCAGAACCGACACCTTGGTGCTCGG
* * * *
47572809 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTCAGTGCTGGGATGTGCAGGAGCCTCGAGCAGCA
195 ATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGCAGCA
* * * * *
47572874 TCAACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTGGGATG
260 TCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATG
* * * *
47572939 TGTGGGAGCCTCGACCAGCATCGGCACATTGGTGGCTCGGATGTGCAGGAGCCTCGACCAGCATC
325 TGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATC
* * * * * *
47573004 GGCACCTTGGGGGCTCT-GATGTGCGGGAGCCTCGGA-AACCGTTGGCAACCTTGGTGCTTGGAT
390 GGCACCTT-GGTGCT-TGGATGTGCGGGAGCC-CTGACCACCATCGGC-ACCTTGGTGCTGGGAT
*
47573067 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG
451 GTGCGGGAGCCTCGAGCACCATCGACACCTTGGTG
47573102 CCAGGGATGT
Statistics
Matches: 1622, Mismatches: 201, Indels: 50
0.87 0.11 0.03
Matches are distributed among these distances:
679 3 0.00
680 200 0.12
681 897 0.55
682 520 0.32
683 2 0.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (681 bp):
AGCATCGGCACCTTGGTGGCTCGGATGTGCGGAAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCCGATGTGCGGGAGCCTCGAGCAC
CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGAACCGACACCTTGGTGCTCGGA
TGTGCAGGAGCCTCGAGCAGCATCAGCACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGCAGCAT
CAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGGATGT
GCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCG
GCACCTTGGTGCTTGGATGTGCGGGAGCCCTGACCACCATCGGCACCTTGGTGCTGGGATGTGCG
GGAGCCTCGAGCACCATCGACACCTTGGTGGCTCGAATGTGCGGGGCCTCGAGCACCATCGGCAC
CTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCAGGA
GCCTCAAGCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAAACCGGTACCT
TGGTGGCTCGGATGTGCGAGGATCCTCGAGG
Found at i:47573951 original size:42 final size:42
Alignment explanation
Indices: 47573869--47574879 Score: 1134
Period size: 42 Copynumber: 23.8 Consensus size: 42
47573859 GGAGCACATG
* *
47573869 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGGGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47573912 GCACCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47573954 CCACCATCGGTACCTTGGTCGCTCAGATGTGCGAGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47573997 GCAGCATCGGCACCTTAGTGCTTGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47574039 GGAGCATCGGCACCTTGGTGCTGGGAT-TGCGGGAGGCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
47574080 GCCA-CATCGGAACCTTGGTTGCTCGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGA
** *
47574123 GTGGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574165 CCACCATCGGCACCTTGGTGGCTCAGATGTGCGAGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47574208 GCAGCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574250 GGAGCATCGGCACCTTGGTGCTGGGATATGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47574292 GCCGCATCGGAACCTTGGTGGCTCGGATGTACGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * ** *
47574335 GCGGCATCAGCACATTGGTGCTTTGATGTGCCGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574377 CCACCGTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47574420 GCACCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GA
* * *
47574462 CCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574504 GTAGCATCGGCACCTTGGTGCTGGGATATGCGGGAGCTTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* ** *
47574546 GCAGCATCGACACCTTGGTGCCTCAAATGTCCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * *
47574589 GCAGCATCTGCACCTTGGTGCTTGCATGTGGGGGAGCCTC-A
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47574630 TGCACCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGA
1 -GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
*
47574674 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47574716 CCAGCATCGGCTCCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47574759 CCAGCATCGACACCTTGGGGGCTCGGATGTGCGGGAGCCTC-A
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574801 GACACCATTGGCAACCCTT-GTGCTTGAATGTGCGGGAGCCTCGA
1 G-CAGCATCGGC-A-CCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
47574845 GTACCATCGGTACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGG
47574880 CTAAAGAAAA
Statistics
Matches: 816, Mismatches: 130, Indels: 44
0.82 0.13 0.04
Matches are distributed among these distances:
41 31 0.04
42 418 0.51
43 357 0.44
44 6 0.01
45 4 0.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:47573994 original size:85 final size:84
Alignment explanation
Indices: 47573870--47574879 Score: 1134
Period size: 85 Copynumber: 11.9 Consensus size: 84
47573860 GAGCACATGG
* * * *
47573870 CAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGGGCCTCGAGCACCATTGGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
47573935 GGATGTGCGGGAGCCTCGAC
65 GGATGTGCGGGAGCCTCGAC
* * * * *
47573955 CACCATCGGTACCTTGGTCGCTCAGATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
* *
47574020 GGATGTGTGGGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAC
* * * *
47574040 GAGCATCGGCACCTTGGTGCTGGGAT-TGCGGGAGGCTCGAGCCA-CATCGGAACCTTGGTTGCT
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGG-TGCT
* *
47574103 CGGATGTGCGGGAGCCTCGAG
64 TGGATGTGCGGGAGCCTCGAC
** * * * *
47574124 TGGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTC
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTT
* * *
47574189 AGATGTGCGAGAGCCTCGAG
65 GGATGTGCGGGAGCCTCGAC
* * * *
47574209 CAGCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCTGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
* *
47574274 GATATGCGGGAGCCCCGAGC
66 GATGTGCGGGAGCCTCGA-C
* * * * *
47574294 C-GCATCGGAACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCGGCATCAGCACATTGGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
* *
47574358 TGATGTGCCGGAGCCTCGAC
65 GGATGTGCGGGAGCCTCGAC
* * * * *
47574378 CACCGTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGAGCACCATCGGCACCTTAGTGCTT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
47574443 GGATGTGCGGGAGCC-CTGAC
65 GGATGTGCGGGAGCCTC-GAC
* * * *
47574463 CACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGTAGCATCGGCACCTTGGTGCTGG
1 CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
* * *
47574528 GATATGCGGGAGCTTCGAG
66 GATGTGCGGGAGCCTCGAC
* ** * *
47574547 CAGCATCGACACCTTGGTGCCTCAAATGTCCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTT
1 CAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
* * *
47574612 GCATGTGGGGGAGCCTC-ATG
65 GGATGTGCGGGAGCCTCGA-C
* * *
47574632 CACCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
47574697 GGATGTGCGGGAGCCTCGAC
65 GGATGTGCGGGAGCCTCGAC
* * * *
47574717 CAGCATCGGCTCCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGACACCTTGGGGGCT
1 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCT
*
47574782 CGGATGTGCGGGAGCCTCAGA-
64 TGGATGTGCGGGAGCCTC-GAC
* * * * * * *
47574803 CACCATTGGCAACCCTT-GTGCTTGAATGTGCGGGAGCCTCGAGTACCATCGGTACCTTGGTGCC
1 CAGCATCGGC-A-CCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-C
*
47574867 TGGGATGTGCGGG
63 TTGGATGTGCGGG
47574880 CTAAAGAAAA
Statistics
Matches: 787, Mismatches: 119, Indels: 37
0.83 0.13 0.04
Matches are distributed among these distances:
83 25 0.03
84 165 0.21
85 512 0.65
86 77 0.10
87 4 0.01
88 4 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (84 bp):
CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTG
GATGTGCGGGAGCCTCGAC
Found at i:47574450 original size:254 final size:255
Alignment explanation
Indices: 47573873--47574879 Score: 1167
Period size: 254 Copynumber: 4.0 Consensus size: 255
47573863 CACATGGCAG
* * *
47573873 CATCGGCACCTTGGTGGCTCAGATGTGCGGGGGCCTCGAGCACCATTGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* * *
47573938 TGTGCGGGAGCCTCGACCACCATCGGTACCTTGGTCGCTCAGATGTGCGAGAGCCTCGAGCAGCA
66 TGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTCGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47574003 TCGGCACCTTAGTGCTTGGATGTGTGGGAGCCTCGAGGAGCATCGGCACCTTGGT-GCTGGGAT-
131 TCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTCGGATG
* * * * ** ***
47574066 TGCGGGAGGCTCGAGCCA-CATCGGAACCTTGGTTGCTCGGATGTGCGGGAGCCTCGAGTGG
196 TACGGGAGCCTCGAG-CAGCATCAGCACCTTGG-TGCTTTGATGTGCGGGAGCCTCGAGCAC
* * **
47574127 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCAG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGG
* * * * * *
47574191 ATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTAGT-GCTTGGATGTGCGGGAGCCTCGAGGAGC
65 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTCGCTCGGATGTGCGGGAGCCTCGAGCAGC
* *
47574255 ATCGGCACCTTGGTGCTGGGATATGCGGGAGCCCCGAGCCGCATCGGAACCTTGGTGGCTCGGAT
130 ATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTCGGAT
* * * *
47574320 GTACGGGAGCCTCGAGCGGCATCAGCACATTGGTGCTTTGATGTGCCGGAGCCTCGACCAC
195 GTACGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTTTGATGTGCGGGAGCCTCGAGCAC
* * *
47574381 CGTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTGAGCACCATCGGCACCTTAGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* *
47574446 TGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGTAGC
66 TGTGCGGGAGCCTC-GACCACCATCGGCACCTTGGTCGCTCGGATGTGCGGGAGCCTCGAGCAGC
* * **
47574509 ATCGGCACCTTGGTGCTGGGATATGCGGGAGCTTCGAGCAGCATC-GACACCTTGGTGCCTCAAA
130 ATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCAGCATCGGA-ACCTTGGTGGCTCGGA
* * *
47574573 TGTCCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGC-TTGCATGTGGGGGAGCCTC-ATGCAC
194 TGTACGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTTTG-ATGTGCGGGAGCCTCGA-GCAC
* * *
47574635 CATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
* * * *
47574700 TGTGCGGGAGCCTCGACCAGCATCGGCTCCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCA
66 TGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTCGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * * *
47574765 TCGACACCTTGGGGGCTCGGATGTGCGGGAGCCTC-AGACACCATTGGCAACCCTT-GT-GCTTG
131 TCGGCACCTT-GGTGCTGGGATATGCGGGAGCCTCGAG-CAGCATCGG-AA-CCTTGGTGGCTCG
* * * * * * **
47574827 AATGTGCGGGAGCCTCGAGTACCATCGGTACCTTGGTGCCTGGGATGTGCGGG
192 GATGTACGGGAGCCTCGAGCAGCATCAGCACCTTGGTG-CTTTGATGTGCGGG
47574880 CTAAAGAAAA
Statistics
Matches: 642, Mismatches: 93, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
253 116 0.18
254 347 0.54
255 100 0.16
256 60 0.09
257 13 0.02
258 6 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (255 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTCGCTCGGATGTGCGGGAGCCTCGAGCAGCA
TCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTCGGATG
TACGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTTTGATGTGCGGGAGCCTCGAGCAC
Found at i:47580222 original size:42 final size:42
Alignment explanation
Indices: 47580159--47580320 Score: 225
Period size: 42 Copynumber: 3.8 Consensus size: 42
47580149 CCGGCACCCT
* * *
47580159 GGTGGCTCGAATGTGCGGGAGCCTCAAGCACCATCCGCACCTA
1 GGTGG-TCGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTA
* *
47580202 GGTGGTCAGATGTGCCGGAGCCTCGAGCACCATCCACACCTA
1 GGTGGTCGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTA
* *
47580244 GGAGGTCGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTT
1 GGTGGTCGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTA
* *
47580286 GGTGCCTCGGATGTGCGGGAGCCTCGAGCACCATC
1 GGTG-GTCGGATGTGCCGGAGCCTCGAGCACCATC
47580321 GGCAACTTTG
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 73 0.69
43 33 0.31
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.17
Consensus pattern (42 bp):
GGTGGTCGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTA
Found at i:47580884 original size:43 final size:42
Alignment explanation
Indices: 47580790--47580958 Score: 205
Period size: 42 Copynumber: 4.0 Consensus size: 42
47580780 CAAGAGTCTC
* *
47580790 CGGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAACACCAT
1 CGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCAT
**
47580833 TAGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-AGCCACCAT
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCAT
* * * *
47580875 CGGCAACCTTGGTGCTCGGCTGTGCGAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCAT
* * *
47580918 CGACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
47580959 AAGCTAAAGT
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 60 0.56
43 44 0.41
44 2 0.02
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCAT
Found at i:47586447 original size:24 final size:24
Alignment explanation
Indices: 47586415--47586490 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
47586405 TCGGTTAGGT
47586415 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
47586439 TCCCGGCGGTGCTCCAGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
47586463 T-CCGGCGGCGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
47586486 TCCCG
1 TCCCG
47586491 ACATATAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
23 21 0.44
24 27 0.56
ACGTcount: A:0.09, C:0.43, G:0.32, T:0.16
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:47586475 original size:23 final size:23
Alignment explanation
Indices: 47586417--47586488 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
47586407 GGTTAGGTTC
47586417 CCGGCGGTGCTCCGGCGATCCAT
1 CCGGCGGTGCTCCGGCGATCCAT
*
47586440 CCCGGCGGTGCTCCAGCGATCCAT
1 -CCGGCGGTGCTCCGGCGATCCAT
*
47586464 CCGGCGGCGCTCCGGCGATCCAT
1 CCGGCGGTGCTCCGGCGATCCAT
47586487 CC
1 CC
47586489 CGACATATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 23 0.51
24 22 0.49
ACGTcount: A:0.10, C:0.43, G:0.32, T:0.15
Consensus pattern (23 bp):
CCGGCGGTGCTCCGGCGATCCAT
Found at i:47586671 original size:42 final size:42
Alignment explanation
Indices: 47586591--47587343 Score: 829
Period size: 42 Copynumber: 17.7 Consensus size: 42
47586581 CATATGGCAG
* *
47586591 CATCGGCACCTTGGTGGCTCGGATGTACGGGGGCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
** *
47586634 CATCGGCACCTTGGTGCTTAGATGTGCGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47586676 CATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGACCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47586719 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47586761 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-C
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * ***
47586802 GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCGCGAGTGG
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47586846 TATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* **
47586888 CGTCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47586931 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGCAC
* *
47586973 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47587015 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGTAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47587057 CATC--CACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGTAG
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
47587098 CATCTGCACCTTGGTGCTTGCATGTG-GGGAGCCTCGTGCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
47587139 CATCGG-ACCTTGTTGGCTCGGATGTGCGGGGGGAGCCTTGACCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGC---GGGAGCCTCGAGCAC
* * *
47587184 CTTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
47587227 CATTGGCACCTTGGGGGCTCGGATATGCGAGAGCCTCG-GACAC
1 CATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CAC
* * *
47587270 CATCGGCAACCTTGATGCGT-AGATGTGCGGGAGCCTCGAACAC
1 CATCGGC-ACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCAC
*
47587313 CATCGGCACCTTGGTGCGTGGGATGTGCGGG
1 CATCGGCACCTTGGTGC-TCGGATGTGCGGG
47587344 CTAAAGAAAA
Statistics
Matches: 610, Mismatches: 78, Indels: 44
0.83 0.11 0.06
Matches are distributed among these distances:
40 17 0.03
41 56 0.09
42 267 0.44
43 226 0.37
44 8 0.01
45 16 0.03
46 20 0.03
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
Found at i:47586697 original size:85 final size:84
Alignment explanation
Indices: 47586587--47587343 Score: 855
Period size: 85 Copynumber: 8.9 Consensus size: 84
47586577 GGAGCATATG
* * *
47586587 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGGGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCT
**
47586652 TAGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47586672 CCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGACCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCT
*
47586737 TGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47586757 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCC-GCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-CCACCATCGGCACCTTGGT-GC
* *
47586821 TCGGATGTACGGGAGCCGCGA
64 TCGGATGTGCGGGAGCCTCGA
** * * *
47586842 GTGGTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCT
**
47586907 CGGATGTATGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* *
47586927 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GACCACCATCGGCACCTTGGTGCT
*
47586991 GGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* ** *
47587011 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGTAGCATC--CACCTTGGTGCCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTG-CT
47587074 CGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * * ** *
47587094 GTAGCATCTGCACCTTGGTGCTTGCATGTG-GGGAGCCTCGTGCACCATCGG-ACCTTGTTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCT
*
47587157 CGGATGTGCGGGGGGAGCCTTGA
65 CGGATGTGC---GGGAGCCTCGA
* * * * *
47587180 CCAGCTTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATTGGCACCTTGGGGGC
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTT-GGTGC
* *
47587245 TCGGATATGCGAGAGCCTCG-
64 TCGGATGTGCGGGAGCCTCGA
* * * *
47587265 GACACCATCGGCAACCTTGATGCGT-AGATGTGCGGGAGCCTCGAACACCATCGGCACCTTGGTG
1 G-CAGCATCGGC-ACCTTGGTGC-TCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTG
*
47587329 CGTGGGATGTGCGGG
63 C-TCGGATGTGCGGG
47587344 CTAAAGAAAA
Statistics
Matches: 576, Mismatches: 76, Indels: 39
0.83 0.11 0.06
Matches are distributed among these distances:
82 26 0.05
83 65 0.11
84 103 0.18
85 247 0.43
86 84 0.15
87 17 0.03
88 17 0.03
89 16 0.03
90 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (84 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGA
Found at i:47586957 original size:212 final size:211
Alignment explanation
Indices: 47586590--47587328 Score: 936
Period size: 212 Copynumber: 3.5 Consensus size: 211
47586580 GCATATGGCA
*
47586590 GCATCGGCACCTTGGTGGCTCGGATGTACGGGGGCCTCGAGCACCATCGGCACCTTGGTGCTTAG
1 GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAG
* *
47586655 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGACCAGC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGT-TGGGAGCCTCGAGCACC
**
47586720 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCTGGGATG
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGCTGGGATG
*
47586785 TGCGGGAGCCCCGAGCC
195 TGCGGGAGCCTCGAGCC
* **** *
47586802 GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCGCGAGTGGTATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAG
*
47586867 ATGTGCGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGCACC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGT-TGGGAGCCTCGAGCACC
*
47586932 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCTGGGAT
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GACCAGCATCGGCACCTTGGTGCTGGGAT
*
47586996 GTGCGGGAGCCTCGAGCA
194 GTGCGGGAGCCTCGAGCC
* * * * **
47587014 GCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGTAGCATC--CACCTTGGTGCCTCG
1 GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTTA
** * * * * * *
47587076 GATGTGCGGGAGCCTCGAGTAGCATCTGCACCTTGGT-GCTTGCATGTGGGGAGCCTCGTGCACC
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTTGGGAGCCTCGAGCACC
* * * * *
47587140 ATCGG-ACCTTGTTGGCTCGGATGTGCGGGGGGAGCCTTGACCAGCTTCGGCACCTTGGTGGCTC
130 ATCGGCACCTTGGT-GCTTGGATGTGC---GGGAGCCTCGACCAGCATCGGCACCTTGGT-GCTG
47587204 GGATGTGCGGGAGCCTCGA-CC
190 GGATGTGCGGGAGCCTCGAGCC
* * * * * * *
47587225 AGCATTGGCACCTTGGGGGCTCGGATATGCGAGAGCCTCG-GACACCATCGGCAACCTTGATGCG
1 -GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCT
*
47587289 TAGATGTGCGGGAGCCTCGAACACCATCGGCACCTTGGTG
63 TAGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTG
47587329 CGTGGGATGT
Statistics
Matches: 459, Mismatches: 53, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
207 7 0.02
208 31 0.07
209 18 0.04
210 35 0.08
211 54 0.12
212 247 0.54
213 24 0.05
215 35 0.08
216 8 0.02
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (211 bp):
GCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTTGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGCTGGGATGT
GCGGGAGCCTCGAGCC
Found at i:47594620 original size:42 final size:42
Alignment explanation
Indices: 47594530--47594653 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
47594520 AATGTTCGGA
* * * *
47594530 AGCCTCAAGCACCATCCGCACCTAGGCGGTCGGATGTGCCGG
1 AGCCTCGAGCCCCATCCGCACCTAGGAGGTCAGATGTGCCGG
*
47594572 AGCCTCGAGCCCCATCTGCACCTAGGAGGTCAGATGTGCCGG
1 AGCCTCGAGCCCCATCCGCACCTAGGAGGTCAGATGTGCCGG
* * * *
47594614 AGCCTCG-GCCACCATCGGCAACCTTGGTGCTCAGATGTGC
1 AGCCTCGAGCC-CCATCCGC-ACCTAGGAGGTCAGATGTGC
47594654 GAGAGGCTCG
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
41 3 0.04
42 51 0.72
43 17 0.24
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.17
Consensus pattern (42 bp):
AGCCTCGAGCCCCATCCGCACCTAGGAGGTCAGATGTGCCGG
Found at i:47594979 original size:23 final size:24
Alignment explanation
Indices: 47594924--47594999 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
47594914 GGTTAGGTTC
* *
47594924 CCGGCGGTGCTCCGGCGATCTATT
1 CCGGTGGTGCTCCGGCGATCCATT
*
47594948 CCGGTGGTGCTCCGGTGATCCATT
1 CCGGTGGTGCTCCGGCGATCCATT
* *
47594972 -CGGTGGTGCTCCTGCGATCCATC
1 CCGGTGGTGCTCCGGCGATCCATT
47594995 CCGGT
1 CCGGT
47595000 ATATAGAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 20 0.44
24 25 0.56
ACGTcount: A:0.08, C:0.33, G:0.33, T:0.26
Consensus pattern (24 bp):
CCGGTGGTGCTCCGGCGATCCATT
Found at i:47595174 original size:42 final size:41
Alignment explanation
Indices: 47595098--47595829 Score: 730
Period size: 42 Copynumber: 17.7 Consensus size: 41
47595088 CACATGGCAG
* *
47595098 CATCGGTACCTTGGTGGCTCGGATGTTCGGGAGCCTCGAGCA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
* * * *
47595140 CTATTGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGACCA
1 C-ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* * *
47595182 CCATCGACAGCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCA
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
* * * *
47595225 GTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGAGGA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* * *
47595267 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCG
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CA
* * *
47595310 CATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCGG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-A
* * *
47595353 CATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* *
47595394 CCGTCGAC-CCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCA
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
* * *
47595436 CCATCGGTACCTTGGTGCTTGGATGTGCGGGAG-CTCTGACCA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGCA
*
47595478 CCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-A
* *
47595521 CATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
* *
47595562 GCATCGACACCTTGGTGCCTCGGATGTACGGGAGCCTCGAGCA
1 -CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCA
* * *
47595605 GCATCTGCACCTT-GTGCT-TGCTGT--GGG-G-CTCG-GCA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
47595640 CATC-GCA-CTT-G-G-TC-GATGTGCGGGAGCCTCGAGCA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
47595675 GCATCGGCACCTT-GTGGCTCGGA--TGCGGGAGCCTCGA-CA
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCA
*
47595714 GCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCG-GACA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CA
* ** *
47595756 CCATCGGCAACTTGGCACTTGGATGTGCGGGAGCCTCGAGCA
1 -CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
*
47595798 CCATCGGCACCTTGGTGCTTGGGATGTGCGGG
1 -CATCGGCACCTTGGTGC-TCGGATGTGCGGG
47595830 CTAAAGAAAA
Statistics
Matches: 587, Mismatches: 69, Indels: 67
0.81 0.10 0.09
Matches are distributed among these distances:
30 5 0.01
31 1 0.00
32 7 0.01
33 4 0.01
34 8 0.01
35 6 0.01
36 8 0.01
37 4 0.01
38 7 0.01
39 22 0.04
40 20 0.03
41 28 0.05
42 328 0.56
43 139 0.24
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (41 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
Found at i:47595291 original size:127 final size:126
Alignment explanation
Indices: 47595094--47595829 Score: 834
Period size: 127 Copynumber: 5.9 Consensus size: 126
47595084 GGAGCACATG
* * * *
47595094 GCAGCATCGGTACCTTGGTGGCTCGGATGTTCGGGAGCCTCGAGCACTATTGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAC-ATCGGCACCTTGGTGCT
* * * * * *
47595159 TGGATGTACGGGAGCCTCGACCACCATCGACAGCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
64 GGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
47595222 GCAGTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGAGGAGCATCGGCACCTTGGTGCTG
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCA-CATCGGCACCTTGGTGCTG
* * *
47595287 GGATGTGCGGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCGA
65 GGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47595349 GCGGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCGTCGAC-CCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCA-CATCGGCACCTTGGT-GCT
* * *
47595413 CGGATGTGCGGGAGCCTCGAGCACCATCGGTACCTTGGT-GCTTGGATGTGCGGGAG-CTCTGA
64 GGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTC-GA
* * *
47595475 CCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTG
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGC-ACATCGGCACCTTGGTGCTG
* * * * *
47595540 GGATATGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCCTCGGATGTACGGGAGCCTCGA
65 GGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
47595602 GCAGCATCTGCACCTT-GTGCTT-GCTGT--GGG-G-CTCG-GCACATC-GCA-CTTGGT-C---
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACATCGGCACCTTGGTGCTGG
*
47595654 GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GTGGCTCGGA--TGCGGGAGCCTCGA
66 GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * **
47595712 -CAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACTTGGCACT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CA-CATCGGCACCTTGGTGCT
* *
47595775 TGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGGATGTGCGGG
64 GGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC-TCGGATGTGCGGG
47595830 CTAAAGAAAA
Statistics
Matches: 520, Mismatches: 61, Indels: 56
0.82 0.10 0.09
Matches are distributed among these distances:
109 14 0.03
110 17 0.03
111 4 0.01
112 9 0.02
113 35 0.07
114 1 0.00
115 5 0.01
116 3 0.01
117 10 0.02
118 6 0.01
119 10 0.02
120 3 0.01
121 4 0.01
122 1 0.00
123 38 0.07
124 6 0.01
125 7 0.01
126 115 0.22
127 210 0.40
128 22 0.04
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (126 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACATCGGCACCTTGGTGCTGG
GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:47595432 original size:84 final size:85
Alignment explanation
Indices: 47595094--47595829 Score: 790
Period size: 85 Copynumber: 8.9 Consensus size: 85
47595084 GGAGCACATG
* * * * *
47595094 GCAGCATCGGTACCTTGGTGGCTCGGATGTTCGGGAGCCTCGAGCACTATTGGCACCTTGGT-GC
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
* *
47595158 TTGGATGTACGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * ** **
47595179 CCACCATCGACAGCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGT-GC
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
* *
47595243 TTGGATGTGCGGGAGCCTGGA
65 TCGGATGTGCGGGAGCCTCGA
* * *
47595264 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGC
* *
47595328 TCAGATGTGCAGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * *
47595349 GCGGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCGTCGAC-CCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
47595413 CGGATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* * *
47595433 GCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAG-CTCTGACCACCATCGGCACCTTGGT-GC
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGGC
*
47595496 TGGGATGTGCGGGAGCCTCGA
65 TCGGATGTGCGGGAGCCTCGA
* * * * * *
47595517 GCAACATCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
*
47595582 CGGATGTACGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* *
47595602 GCAGCATCTGCACCTT-GTGCTT-GCTGT--GGG-G-CTCG-GCA-CATC-GCA-C-T--TGG-T
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
47595653 C-GATGTGCGGGAGCCTCGA
66 CGGATGTGCGGGAGCCTCGA
* *
47595672 GCAGCATCGGCACCTT-GTGGCTCGGA--TGCGGGAGCCTCGA-CAGCATCGGCACCTTGG-GGC
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
47595732 TCGGATGTGCGGGAGCCTCG-
65 TCGGATGTGCGGGAGCCTCGA
* * **
47595752 GACACCATCGGCAACTTGGCACTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
1 G-CAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC
*
47595816 TTGGGATGTGCGGG
65 -TCGGATGTGCGGG
47595830 CTAAAGAAAA
Statistics
Matches: 552, Mismatches: 70, Indels: 58
0.81 0.10 0.09
Matches are distributed among these distances:
70 35 0.06
71 5 0.01
72 6 0.01
73 1 0.00
74 7 0.01
75 5 0.01
76 5 0.01
77 5 0.01
78 4 0.01
79 6 0.01
80 4 0.01
81 38 0.07
82 1 0.00
83 20 0.04
84 203 0.37
85 206 0.37
86 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCT
CGGATGTGCGGGAGCCTCGA
Found at i:47601852 original size:43 final size:42
Alignment explanation
Indices: 47601744--47601859 Score: 151
Period size: 42 Copynumber: 2.7 Consensus size: 42
47601734 ATTCAGCGGG
*
47601744 GCTCGAATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGA
1 GCTCGGATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGA
* * * * *
47601786 GGTCGGATGTACCGGAGCCTCGAGCACCATCCGCACCTTGGT
1 GCTCGGATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGA
* *
47601828 GCCTCTGATGTGCGGGAGCCTCGAGTACCATC
1 G-CTCGGATGTGCGGGAGCCTCGAGCACCATC
47601860 GGCAACTTTG
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 37 0.60
43 25 0.40
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (42 bp):
GCTCGGATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGA
Done.