Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 146 of 208
Found at i:47601884 original size:43 final size:43
Alignment explanation
Indices: 47601750--47601885 Score: 123
Period size: 42 Copynumber: 3.2 Consensus size: 43
47601740 CGGGGCTCGA
* * * ** *
47601750 ATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGAG-GTCGG
1 ATGTGCGGGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCTG
* * * *
47601792 ATGTACCGGAGCCTCGAGCACCATCCGCACCTTGGTGCCTCTG
1 ATGTGCGGGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCTG
* * *
47601835 ATGTGCGGGAGCCTCGAGTACCATCGGCAACTTTG-GCCCCTG
1 ATGTGCGGGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCTG
*
47601877 TTGGTGCGG
1 AT-GTGCGG
47601886 AAGCGTTGGG
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 40 0.51
43 38 0.49
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCTG
Found at i:47602423 original size:43 final size:42
Alignment explanation
Indices: 47602326--47602494 Score: 223
Period size: 42 Copynumber: 4.0 Consensus size: 42
47602316 CAAGAGTCTC
*
47602326 CGGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCAT
1 CGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCAT
*
47602369 CGGCACTTTGGTGCTCGGATGTGCGGGAGCCTC-AGCCACCAT
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCAT
* * *
47602411 CGGCAACCTTGGTGCTCGGATGTGCGAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCAT
** * *
47602454 CGATACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
47602495 AAGCTAAAGT
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
41 2 0.02
42 63 0.57
43 44 0.40
44 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.19
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCAT
Found at i:47602474 original size:85 final size:85
Alignment explanation
Indices: 47602326--47602494 Score: 225
Period size: 85 Copynumber: 2.0 Consensus size: 85
47602316 CAAGAGTCTC
* * * * *
47602326 CGGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGCACTTTGGTGCTCGGATGT
1 CGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACCTTGGTGCTAGGATGT
*
47602391 GCGGGAGCCTC-AGCCACCAT
66 GCGGAAGCCTCGAG-CACCAT
* * *
47602411 CGGCAACCTTGGT-GCTCGGATGTGCGAGAGGCTCGAGCACCACCGATACCTTGGTGCTAGGATG
1 CGGC-ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACCTTGGTGCTAGGATG
47602475 TGCGGAAGCCTCGAGCACCA
65 TGCGGAAGCCTCGAGCACCA
47602495 AAGCTAAAGT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
85 63 0.86
86 10 0.14
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.19
Consensus pattern (85 bp):
CGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACCTTGGTGCTAGGATGT
GCGGAAGCCTCGAGCACCAT
Found at i:47602730 original size:24 final size:24
Alignment explanation
Indices: 47602703--47602776 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
47602693 CCGGTTAGGT
*
47602703 TCCCGGCGATGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
* *
47602727 TCCCGGTGGTGCTCCGGCGACCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
* *
47602751 T-CCGGCGGCGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
47602774 TCC
1 TCC
47602777 TGGCATATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 19 0.45
24 23 0.55
ACGTcount: A:0.09, C:0.42, G:0.31, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:47602763 original size:23 final size:23
Alignment explanation
Indices: 47602713--47602776 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
47602703 TCCCGGCGAT
* *
47602713 GCTCCGGCGATCCATCCCGGTGGT
1 GCTCCGGCGATCCAT-CCGGCGGC
*
47602737 GCTCCGGCGACCCATCCGGCGGC
1 GCTCCGGCGATCCATCCGGCGGC
*
47602760 GCTCCGGTGATCCATCC
1 GCTCCGGCGATCCATCC
47602777 TGGCATATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 21 0.60
24 14 0.40
ACGTcount: A:0.09, C:0.42, G:0.31, T:0.17
Consensus pattern (23 bp):
GCTCCGGCGATCCATCCGGCGGC
Found at i:47602958 original size:42 final size:42
Alignment explanation
Indices: 47602879--47603801 Score: 985
Period size: 42 Copynumber: 21.7 Consensus size: 42
47602869 CACATGGCAG
47602879 CATCGGCACCTTGGTGGCTCGGATGTGCGAGG-GCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCG-GGAGCCTCGAGCAC
* *
47602922 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
47602964 CATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47603006 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-C
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * **
47603047 GCATCGGCACCTTGGTGGCTCGGATGTACGGGATCCTCGAGCGG
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * * * *
47603091 CATCGGCACATTGGTGCTTGGATGTACGGGAGCCTCCACCAT
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
** * * ***
47603133 TGTCGGCACCTTGGTGGCTCGGATGTGCAGGAGGCTCGAGGTG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47603176 TATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-C
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * **
47603217 ACATCGGCACCTTGGTGGCTCGGATGTACGGAAGCCTCGAGCGG
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
47603261 CATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTCCACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47603303 CGTTGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47603346 CATCGGCACCTTAGTGCTTGGATGTGCGGGAGCC-CTGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGCAC
* * *
47603388 CATCGGCACCTTGGTGCTGGGATGTGCGAGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47603430 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47603472 CATCGACACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAC
* * * * * *
47603515 CATCTGCACCTTGGTGCTTGCACGTGGGGGAGCCTCGTGCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47603557 CATCGGTACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * * *
47603600 CATCAGCACCTTGGTGCTGGGATGTGTC-AGAGCCTCGACCAA
1 CATCGGCACCTTGGTGCTCGGATGTG-CGGGAGCCTCGAGCAC
* * * *
47603642 CATCGGCACCTTGGTGGCTCGGATGTGCGAGAGCCTCAACCAA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47603685 CATCGGCACATTGGGGGCTCGGATGTGCGGGAGCCTCG-GACAC
1 CATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CAC
* *
47603728 CATCGGAAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
1 CATCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
47603771 CATCGGCACCTTGGTGCCTGGGATGTACGGG
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGG
47603802 CTAAAGAAAA
Statistics
Matches: 743, Mismatches: 116, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
41 3 0.00
42 402 0.54
43 331 0.45
44 7 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
Found at i:47603107 original size:85 final size:85
Alignment explanation
Indices: 47602878--47603801 Score: 1012
Period size: 85 Copynumber: 10.9 Consensus size: 85
47602868 GCACATGGCA
* *
47602878 GCATCGGCACCTTGGTGGCTCGGATGTGCGAGG-GCCTCGAGCACCATCGGCACCTTGGTGCTTG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGG
* *
47602942 GATGTGCGGGAGCCTCGAGCA
65 GATGTGCGGGAGCCCCGAGCC
* * *
47602963 GCATCGGCACCTTAGT-GCTTGGATGTGCGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCTGGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
47603027 ATGTGCGGGAGCCCCGAGCC
66 ATGTGCGGGAGCCCCGAGCC
* * * * *
47603047 GCATCGGCACCTTGGTGGCTCGGATGTACGGGATCCTCGAGCGGCATCGGCACATTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
*
47603112 ATGTACGGGAGCCTCC-A-CC
66 ATGTGCGGGAGCC-CCGAGCC
*** * * ** *
47603131 ATTGTCGGCACCTTGGTGGCTCGGATGTGCAGGAGGCTCGAGGTGTATCGGCACCTTGGTGCTGG
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGG
47603196 GATGTGCGGGAGCCCCGAGCC
65 GATGTGCGGGAGCCCCGAGCC
* * * * *
47603217 ACATCGGCACCTTGGTGGCTCGGATGTACGGAAGCCTCGAGCGGCATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
*
47603282 ATGTGCGAGAGCCTCC-A-CC
66 ATGTGCGGGAGCC-CCGAGCC
* * * * * * *
47603301 ACCGTTGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTAGTGCTTG
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGG
*
47603366 GATGTGCGGGAGCCCTGA-CC
65 GATGTGCGGGAGCCCCGAGCC
* * *
47603386 ACCATCGGCACCTTGGT-GCTGGGATGTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGG
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGG
* *
47603450 GATGTGCGGGAGCCTCGAGCA
65 GATGTGCGGGAGCCCCGAGCC
* * * * * *
47603471 GCATCGACACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGC
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
* * * *
47603536 ACGTGGGGGAGCCTCGTGCAC
66 ATGTGCGGGAGCCCCGAGC-C
* * *
47603557 -CATCGGTACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTGGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
* *
47603621 ATGTGTC-AGAGCCTCGA-CC
66 ATGTG-CGGGAGCCCCGAGCC
* * * * * * * *
47603640 AACATCGGCACCTTGGTGGCTCGGATGTGCGAGAGCCTCAACCAACATCGGCACATTGGGGGCTC
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTG
*
47603705 GGATGTGCGGGAGCCTCG-GACAC
64 GGATGTGCGGGAGCCCCGAG-C-C
* * *
47603728 -CATCGGAAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTG
1 GCATCGG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTG
*
47603791 GGATGTACGGG
64 GGATGTGCGGG
47603802 CTAAAGAAAA
Statistics
Matches: 710, Mismatches: 107, Indels: 43
0.83 0.12 0.05
Matches are distributed among these distances:
83 3 0.00
84 153 0.22
85 467 0.66
86 77 0.11
87 9 0.01
88 1 0.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (85 bp):
GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
ATGTGCGGGAGCCCCGAGCC
Found at i:47603691 original size:424 final size:423
Alignment explanation
Indices: 47602879--47603801 Score: 1234
Period size: 424 Copynumber: 2.2 Consensus size: 423
47602869 CACATGGCAG
47602879 CATCGGCACCTTGGTGGCTCGGATGTGCGAGG-GCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 CATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
* * * * *
47602943 ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGGAGCA
65 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTAGTGCTGGGATGTGCGAGAGCCTCGAGCAGCA
* * *
47603008 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCGCATCGGCACCTTGGTGGCTCGGATG
130 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCGGATG
* * * *
47603073 TACGGGATCCTCGAGCGGCATCGGCACATTGGTGCTTGGATGTACGGGAGCCTCCACCATTGTCG
195 TACGGGAGCCTCGAGCAGCATCGGCACATTGGTGCTTGCACGTACGGGAGCCTCCACCA-T-TCG
* ** * *
47603138 GCACCTTGGTGGCTCGGATGTGCAGGAGGCTCGAGGTGTATCGGCACCTTGGTGCTGGGATGTGC
258 GCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTGGGATGTGC
* * * **
47603203 GGGAGCCCCGAGCCACATCGGCACCTTGGTGGCTCGGATGTACGGAAGCCTCGAGCGGCATCGGC
323 GAGAGCCCCGAGCCACATCGGCACCTTGGTGGCTCGGATGTACGGAAGCCTCAACCAACATCGGC
* * *
47603268 ACCTT-GGTGCTTGGATGTGCGAGAGCCTC-CACCAC
388 ACATTGGGGGCTCGGATGTGCGAGAGCCTCGCA-CAC
* * * *
47603303 CGTTGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTAGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
47603368 TGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCTGGGATGTGCGAGAGCCTCGAGCAGCA
66 TGTGCGGGAGCCTC-GACCACCATCGGCACCTTAGTGCTGGGATGTGCGAGAGCCTCGAGCAGCA
*
47603432 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCCTCGGATG
130 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCGGATG
** * * **
47603497 TGTGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCACGTGGGGGAGCCTCGTGCACCA-TC
195 TACGGGAGCCTCGAGCAGCATCGGCACATTGGTGCTTGCACGTACGGGAGCCTC---CACCATTC
* * *
47603561 GGTACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTGGGATGTG
257 GGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTGGGATGTG
* *
47603626 TC-AGAGCCTCGA-CCAACATCGGCACCTTGGTGGCTCGGATGTGC-GAGAGCCTCAACCAACAT
322 -CGAGAGCCCCGAGCC-ACATCGGCACCTTGGTGGCTCGGATGTACGGA-AGCCTCAACCAACAT
* *
47603688 CGGCACATTGGGGGCTCGGATGTGCGGGAGCCTCGGACAC
384 CGGCACATTGGGGGCTCGGATGTGCGAGAGCCTCGCACAC
* * *
47603728 CATCGGAAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTGG
1 CATCGG-CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTTG
*
47603792 GATGTACGGG
64 GATGTGCGGG
47603802 CTAAAGAAAA
Statistics
Matches: 435, Mismatches: 52, Indels: 22
0.85 0.10 0.04
Matches are distributed among these distances:
423 7 0.02
424 333 0.77
425 69 0.16
426 21 0.05
427 5 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.21
Consensus pattern (423 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGACCACCATCGGCACCTTAGTGCTGGGATGTGCGAGAGCCTCGAGCAGCAT
CGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCGGATGT
ACGGGAGCCTCGAGCAGCATCGGCACATTGGTGCTTGCACGTACGGGAGCCTCCACCATTCGGCA
CCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTGGGATGTGCGAG
AGCCCCGAGCCACATCGGCACCTTGGTGGCTCGGATGTACGGAAGCCTCAACCAACATCGGCACA
TTGGGGGCTCGGATGTGCGAGAGCCTCGCACAC
Found at i:47604500 original size:43 final size:41
Alignment explanation
Indices: 47604406--47604574 Score: 194
Period size: 42 Copynumber: 4.0 Consensus size: 41
47604396 CAAGAGTCTC
* * *
47604406 CGGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGTACACCAT
1 CGGCACCTTGGT-GCTAGGATGTGCGGGAGCCTCG-GCACCAT
*
47604449 CAGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGGCCACCAT
1 CGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGG-CACCAT
* * * *
47604491 CGGCAACCTTGGTGCTCGGATGTGCGAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTAGGATGTGCGGGAGCCTCG-GCACCAT
* *
47604534 CGACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCG-GCACCA
47604575 AAGCTAAAGT
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 62 0.57
43 46 0.42
44 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (41 bp):
CGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGGCACCAT
Found at i:47604574 original size:85 final size:85
Alignment explanation
Indices: 47604406--47604567 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 85
47604396 CAAGAGTCTC
* *
47604406 CGGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGTACACCATCAGCACCTTGGTGCTAGGATGT
1 CGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGTACACCACCAGCACCTTGGTGCTAGGATGT
*
47604471 GCGGGAGCCTCGGCCACCAT
66 GCGGAAGCCTCGGCCACCAT
* *
47604491 CGGCAACCTTGGT-GCTCGGATGTGCGAGAGGCTCG-AGCACCACC-GACACCTTGGTGCTAGGA
1 CGGC-ACCTTGGTGGCTCGGATATGCGAGAGCCTCGTA-CACCACCAG-CACCTTGGTGCTAGGA
47604553 TGTGCGGAAGCCTCG
63 TGTGCGGAAGCCTCG
47604568 AGCACCAAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
84 2 0.03
85 59 0.86
86 8 0.12
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.19
Consensus pattern (85 bp):
CGGCACCTTGGTGGCTCGGATATGCGAGAGCCTCGTACACCACCAGCACCTTGGTGCTAGGATGT
GCGGAAGCCTCGGCCACCAT
Found at i:47609954 original size:24 final size:24
Alignment explanation
Indices: 47609927--47610000 Score: 123
Period size: 24 Copynumber: 3.1 Consensus size: 24
47609917 TTAGGTTCCT
47609927 GGCGGTGCTCCGGCGATCCATCCC
1 GGCGGTGCTCCGGCGATCCATCCC
47609951 GGCGGTGCTCCGGCGATCCAT-CC
1 GGCGGTGCTCCGGCGATCCATCCC
**
47609974 GGCGACGCTCCGGCGATCCATCCC
1 GGCGGTGCTCCGGCGATCCATCCC
47609998 GGC
1 GGC
47610001 ATATAGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 21 0.45
24 26 0.55
ACGTcount: A:0.09, C:0.42, G:0.34, T:0.15
Consensus pattern (24 bp):
GGCGGTGCTCCGGCGATCCATCCC
Found at i:47609965 original size:11 final size:11
Alignment explanation
Indices: 47609927--47609990 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
47609917 TTAGGTTCCT
*
47609927 GGCGGTGCTCC
1 GGCGATGCTCC
*
47609938 GGCGATCCATCCC
1 GGCGATGC-T-CC
*
47609951 GGCGGTGCTCC
1 GGCGATGCTCC
*
47609962 GGCGATCCATCC
1 GGCGATGC-TCC
*
47609974 GGCGACGCTCC
1 GGCGATGCTCC
47609985 GGCGAT
1 GGCGAT
47609991 CCATCCCGGC
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
11 22 0.54
12 11 0.27
13 8 0.20
ACGTcount: A:0.09, C:0.39, G:0.36, T:0.16
Consensus pattern (11 bp):
GGCGATGCTCC
Found at i:47609983 original size:23 final size:23
Alignment explanation
Indices: 47609933--47609996 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
47609923 TCCTGGCGGT
**
47609933 GCTCCGGCGATCCATCCCGGCGGT
1 GCTCCGGCGATCCAT-CCGGCGAC
47609957 GCTCCGGCGATCCATCCGGCGAC
1 GCTCCGGCGATCCATCCGGCGAC
47609980 GCTCCGGCGATCCATCC
1 GCTCCGGCGATCCATCC
47609997 CGGCATATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 23 0.61
24 15 0.39
ACGTcount: A:0.11, C:0.44, G:0.30, T:0.16
Consensus pattern (23 bp):
GCTCCGGCGATCCATCCGGCGAC
Found at i:47610185 original size:42 final size:42
Alignment explanation
Indices: 47610095--47610894 Score: 904
Period size: 42 Copynumber: 18.8 Consensus size: 42
47610085 GGAGCACATG
*
47610095 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGGGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
47610138 GCACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCGCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47610180 CCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47610223 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGTGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47610265 GGAGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47610307 GCCGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCGCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47610350 GCGGTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * **
47610392 CCACCGTCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47610435 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GA
* * * *
47610477 CCACCATCAGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
47610519 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47610561 GTAGAATCGACACCTTGGTGCCTCGGATGTGCGGAAGCCTTGA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * * * *
47610604 GCAGCATCTGCACCTTAGTGCTTGTATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47610646 GCACCATCGGCACCTTGTTGGCTCAGATATTCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47610689 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
47610731 CCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * *
47610774 CCAGCATCGGCACCTTGGGAGCTCAGATATGCGAGAGCCTCG-
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47610816 GACACCATCGGCAACCTTGGTGCGT-AGATGTGCAGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGC-TCGGATGTGCGGGAGCCTCGA
* * * *
47610860 ACACCTTCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGG
47610895 CTAAAGAAAA
Statistics
Matches: 642, Mismatches: 100, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.00
42 334 0.52
43 299 0.47
44 8 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:47610220 original size:85 final size:84
Alignment explanation
Indices: 47610095--47610894 Score: 915
Period size: 85 Copynumber: 9.4 Consensus size: 84
47610085 GGAGCACATG
*
47610095 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGGGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
47610160 TGGATGTACGGGAGCCGCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47610180 CCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
47610245 TGGATGTGCGGGTGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47610265 GGAGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCCCGAGC-CGCATCGGTACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GC
*
47610329 TCGGATGTGCGGGAGCCGCGA
64 TCGGATGTGCGGGAGCCTCGA
* * * * *
47610350 GCGGTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
**
47610415 CGGATGTATGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47610435 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCAGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGCT
*
47610499 GGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * ** *
47610519 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGTAGAATCGACACCTTGGTGCCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CT
* *
47610584 CGGATGTGCGGAAGCCTTGA
65 CGGATGTGCGGGAGCCTCGA
* * * * * * *
47610604 GCAGCATCTGCACCTTAGTGCTTGTATGTGGGGGAGCCTCGTGCACCATCGGCACCTTGTTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
* * *
47610669 CAGATATTCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * *
47610689 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTTGACCAGCATCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
47610754 CGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * * *
47610774 CCAGCATCGGCACCTTGGGAGCTCAGATATGCGAGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
* *
47610838 CGT-AGATGTGCAGGAGCCTCGA
63 C-TCGGATGTGCGGGAGCCTCGA
* * * *
47610860 ACACCTTCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGG
47610895 CTAAAGAAAA
Statistics
Matches: 606, Mismatches: 97, Indels: 23
0.83 0.13 0.03
Matches are distributed among these distances:
84 109 0.18
85 416 0.69
86 72 0.12
87 9 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (84 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGA
Found at i:47610465 original size:212 final size:211
Alignment explanation
Indices: 47610098--47610894 Score: 992
Period size: 212 Copynumber: 3.7 Consensus size: 211
47610088 GCACATGGCA
* * *
47610098 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGGGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* * *
47610163 ATGTACGGGAGCCGCGACCACCATCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGTGGGAGCCTCGAGCACC
* * *
47610228 ATCGGCACCTTGGTGCTTGGATGTGCGGGTGCCTCGAGGAGCATCGGCACCTTGGTGCTAGGATG
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATG
*
47610293 TGCGGGAGCCCCGAGCC
195 TGCGGGAGCCTCGAGCC
* * * * *
47610310 GCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCGCGAGCGGTATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
* *
47610375 ATGTGCGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCGGATGTATGGGAGCCTCGAGCACC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGTGGGAGCCTCGAGCACC
* * *
47610440 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCAGCACCTTGGTGCTGGGAT
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCAGCATCGGCACCTTGGTGCTGGGAT
*
47610504 GTGCGGGAGCCTCGAGCA
194 GTGCGGGAGCCTCGAGCC
* * * *
47610522 GCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGTAGAATCGACACCTTGGTGCCTCG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCG
* * * * * * * * * *
47610586 GATGTGCGGAAGCCTTGAGCAGCATCTGCACCTTAGTGCTTGTATGTGGGGGAGCCTCGTGCACC
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGTGGGAGCCTCGAGCACC
* ** * *
47610651 ATCGGCACCTTGTTGGCTCAGATATTCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGAT
130 ATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGAT
*
47610716 GTGCGGGAGCCTTGA-CC
194 GTGCGGGAGCCTCGAGCC
* *
47610733 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGGAGCTC
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTC
* * * * ** *
47610798 AGATATGCGAGAGCCTCGGA-CACCATCGGCAACCTTGGTGCGT-AGATGTGCAGGAGCCTCGAA
64 GGATGTGCGGGAGCCTC-GACCACCATCGGC-ACCTTGGTGC-TCGGATGTGTGGGAGCCTCGAG
* *
47610861 CACCTTCGGCACCTTGGTGCCTGGGATGTGCGGG
126 CACCATCGGCACCTTGGTG-CTTGGATGTGCGGG
47610895 CTAAAGAAAA
Statistics
Matches: 499, Mismatches: 75, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
211 75 0.15
212 310 0.62
213 59 0.12
214 54 0.11
215 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (211 bp):
GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGTGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGT
GCGGGAGCCTCGAGCC
Found at i:47617646 original size:42 final size:41
Alignment explanation
Indices: 47617599--47617750 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 41
47617589 GGTGGCTTGA
*
47617599 ATGTGCCGGAGCCTCGAGCACCATCCGCACCTAAACGGTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGA-GGTCGG
*
47617641 ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGAGGTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGCACCTA-GAGGTCGG
* * *
47617683 ATGTGCCAGAGCCTCGAGCACCATCCGCACCTTGATGCCTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGA-G-GTCGG
* * *
47617726 ATGCGCGGGAGGCTCGAGCACCATC
1 ATGTGCCGGAGCCTCGAGCACCATC
47617751 GGCAACTTTG
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.02
42 69 0.71
43 26 0.27
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (41 bp):
ATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGAGGTCGG
Found at i:47618303 original size:42 final size:42
Alignment explanation
Indices: 47618219--47618361 Score: 126
Period size: 43 Copynumber: 3.4 Consensus size: 42
47618209 CAAGAGTCTC
* * *
47618219 CGGCACCTTGGTGGCTCGGATATGCAGGAGCCTTGAGCACCAT
1 CGGCACCTTGGT-GCTCAGATATACAGGAGCCTCGAGCACCAT
* *
47618262 CGGCACCTTGGTGCTCAGATGTACGGGAGCCTCG-GCCACCAT
1 CGGCACCTTGGTGCTCAGATATACAGGAGCCTCGAG-CACCAT
* ** * * * * *
47618304 CAGCAACCTTGGTGCTTGGATGTGCAAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCAGATATACAGGAGCCTCGAGCACCAT
*
47618347 CGACACCTTGGTGCT
1 CGGCACCTTGGTGCT
47618362 AGGATGTGCG
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 37 0.45
43 43 0.52
44 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCAGATATACAGGAGCCTCGAGCACCAT
Found at i:47618345 original size:43 final size:43
Alignment explanation
Indices: 47618223--47618387 Score: 151
Period size: 42 Copynumber: 3.9 Consensus size: 43
47618213 AGTCTCCGGC
* * *
47618223 ACCTTGGTGGCTCGGATATGCAGGAGCCTTGAGCACCATCGGC-
1 ACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
* * *
47618266 ACCTTGGTGCTCAGATGTACGGGAGCCTCG-GCCACCATCAGCA
1 ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAG-CACCATCAGCA
* * * *
47618309 ACCTTGGTGCTTGGATGTGCAAGAGGCTCGAGCACCA-CCG-A
1 ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
* *
47618350 CACCTTGGTGCTAGGATGTGC-GGAAGCCTTGAGCACCA
1 -ACCTTGGTGCTCGGATGTGCAGG-AGCCTCGAGCACCA
47618388 AAGCTAAAGT
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 3 0.03
42 59 0.59
43 37 0.37
44 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (43 bp):
ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
Found at i:47630671 original size:42 final size:42
Alignment explanation
Indices: 47630624--47630775 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 42
47630614 GGTGGCTCGA
* * *
47630624 ATGTGCGGGAGCCTCGAGCACCATCCACACCTAGGCGGTCGG
1 ATGTGCAGGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGG
* *
47630666 ATGTGCTGGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGA
1 ATGTGCAGGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGG
* * * * * *
47630708 ATGTGCCGGAGCCTCAAGCACCATCTGCACCTTGGTGCTTCGG
1 ATGTGCAGGAGCCTCGAGCACCATCCGCACCTAGGAG-GTCGG
47630751 ATGTGCAGGAGCCTCGAGCACCATC
1 ATGTGCAGGAGCCTCGAGCACCATC
47630776 GGTAACTTTG
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 70 0.73
43 26 0.27
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (42 bp):
ATGTGCAGGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGG
Found at i:47630739 original size:84 final size:85
Alignment explanation
Indices: 47630620--47630775 Score: 233
Period size: 84 Copynumber: 1.8 Consensus size: 85
47630610 CCCTGGTGGC
* * *
47630620 TCGAATGTGCGGGAGCCTCGAGCACCATCCACACCTAGGCG-GTCGGATGTGCTGGAGCCTCGAG
1 TCGAATGTGCCGGAGCCTCAAGCACCATCCACACCTAGGCGCGTCGGATGTGCAGGAGCCTCGAG
47630684 CACCATCCGCACCTAGGAGG
66 CACCATCCGCACCTAGGAGG
** * * *
47630704 TCGAATGTGCCGGAGCCTCAAGCACCATCTGCACCTTGGTGCTTCGGATGTGCAGGAGCCTCGAG
1 TCGAATGTGCCGGAGCCTCAAGCACCATCCACACCTAGGCGCGTCGGATGTGCAGGAGCCTCGAG
47630769 CACCATC
66 CACCATC
47630776 GGTAACTTTG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 35 0.56
85 28 0.44
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (85 bp):
TCGAATGTGCCGGAGCCTCAAGCACCATCCACACCTAGGCGCGTCGGATGTGCAGGAGCCTCGAG
CACCATCCGCACCTAGGAGG
Found at i:47631338 original size:43 final size:42
Alignment explanation
Indices: 47631244--47631386 Score: 117
Period size: 43 Copynumber: 3.4 Consensus size: 42
47631234 CAAGAGTCTC
47631244 CGGCACCTTGGTGGCTCAGATATACGAGAGCCTCAAGCACCAT
1 CGGCACCTTGGT-GCTCAGATATACGAGAGCCTCAAGCACCAT
* * * * **
47631287 CAGTACCTTGGTGCTCAGATATGCGGGAGCCT-TGGCCACCAT
1 CGGCACCTTGGTGCTCAGATATACGAGAGCCTCAAG-CACCAT
* * * * * * *
47631329 CGGCAACCTTGGTGTTCGGATGTGCGAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCAGATATACGAGAGCCTCAAGCACCAT
* *
47631372 CGACACCTTAGTGCT
1 CGGCACCTTGGTGCT
47631387 AGGATGTGCG
Statistics
Matches: 78, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
41 1 0.01
42 35 0.45
43 41 0.53
44 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCAGATATACGAGAGCCTCAAGCACCAT
Found at i:47631675 original size:21 final size:22
Alignment explanation
Indices: 47631642--47631685 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
47631632 TTTCTCGTGT
* *
47631642 TGTTGATTTTCTTTCGATTTTG
1 TGTTGATTATCTTACGATTTTG
47631664 TGTTG-TTATCTTACGATTTTG
1 TGTTGATTATCTTACGATTTTG
47631685 T
1 T
47631686 TTTTTTTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.11, C:0.09, G:0.18, T:0.61
Consensus pattern (22 bp):
TGTTGATTATCTTACGATTTTG
Found at i:47637809 original size:24 final size:24
Alignment explanation
Indices: 47637780--47637852 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 24
47637770 AGGTTTCCGA
47637780 CAGTGCTCCGGCGATCCATCCCGG
1 CAGTGCTCCGGCGATCCATCCCGG
* * * **
47637804 CGGTGCTCCAGTGATCCAT-CTAG
1 CAGTGCTCCGGCGATCCATCCCGG
* *
47637827 TAGCGCTCCGGCGATCCATCCCGG
1 CAGTGCTCCGGCGATCCATCCCGG
47637851 CA
1 CA
47637853 TATAGAAAAC
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
23 16 0.46
24 19 0.54
ACGTcount: A:0.15, C:0.38, G:0.27, T:0.19
Consensus pattern (24 bp):
CAGTGCTCCGGCGATCCATCCCGG
Found at i:47638029 original size:42 final size:42
Alignment explanation
Indices: 47637946--47638745 Score: 994
Period size: 42 Copynumber: 18.8 Consensus size: 42
47637936 GGAGCACATG
*
47637946 GCAGCATCGGCACCTTGGTGGCTCGGATGTTCGAGG-GCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCG-GGAGCCTCGA
* *
47637989 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47638031 CCAGCATCGGCACCTTGGTACCACGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
47638074 GCAGCATTGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47638116 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47638158 GCCGCATCGGTACCTTGGTGGCTCGAATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
47638201 GCGGCATCAGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47638243 CCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47638286 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GA
* * *
47638328 CCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47638370 GCAGCATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * ** *
47638412 GCAGTATCGACATTTTGTTGCCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * * *
47638455 GCAGCATCTGCACCTTGGTGCTTGCATGTGGGGGAGCCTCGC
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
47638497 GCACCATCAGCACCTTGTTAGCTCGAATGTCCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
*
47638540 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
47638582 CCAGCATCGGCACCTTAGTGGCTCGGATGTGTGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
47638625 CCAGCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGA
* *
47638667 GACACCATCGGCAACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
47638711 GCACCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGG
47638746 CTAAAGATAA
Statistics
Matches: 659, Mismatches: 84, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
41 3 0.00
42 335 0.51
43 314 0.48
44 7 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:47638071 original size:85 final size:84
Alignment explanation
Indices: 47637946--47638745 Score: 1014
Period size: 85 Copynumber: 9.4 Consensus size: 84
47637936 GGAGCACATG
* *
47637946 GCAGCATCGGCACCTTGGTGGCTCGGATGTTCGAGG-GCCTCGAGCACCATCGGCACCTTGGTGC
1 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCG-GGAGCCTCGAGCACCATCGGCACCTTGGTGC
*
47638010 TTGGATGTGCGGGAGCCTCGA
64 TCGGATGTGCGGGAGCCTCGA
* * ** * *
47638031 CCAGCATCGGCACCTTGGTACCACGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
47638096 TGGATGTGTGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* *
47638116 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC-CGCATCGGTACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GC
*
47638180 TCGAATGTGCGGGAGCCTCGA
64 TCGGATGTGCGGGAGCCTCGA
* * * * *
47638201 GCGGCATCAGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGACCACCATCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
47638266 CGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * *
47638286 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGCT
*
47638350 GGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* ** * ** *
47638370 GCAGCATCGGCACCTTGGTGTTGGGATGTGCGGGAGCCTCGAGCAGTATCGACATTTTGTTGCCT
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CT
47638435 CGGATGTGCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * * * * * *
47638455 GCAGCATCTGCACCTTGGTGCTTGCATGTGGGGGAGCCTCGCGCACCATCAGCACCTTGTTAGCT
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
* *
47638520 CGAATGTCCGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * *
47638540 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTAGTGGCT
1 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCT
*
47638605 CGGATGTGTGGGAGCCTCGA
65 CGGATGTGCGGGAGCCTCGA
* * *
47638625 CCAGCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTT-GGTGCTGGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
*
47638689 CTGGGATGTGCGGGAGCCTCGA
63 CTCGGATGTGCGGGAGCCTCGA
*
47638711 GCACCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTGGGATGTGCGGG
47638746 CTAAAGATAA
Statistics
Matches: 620, Mismatches: 83, Indels: 23
0.85 0.11 0.03
Matches are distributed among these distances:
84 109 0.18
85 422 0.68
86 82 0.13
87 7 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (84 bp):
GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGA
Found at i:47638323 original size:212 final size:211
Alignment explanation
Indices: 47637949--47638745 Score: 1064
Period size: 212 Copynumber: 3.7 Consensus size: 211
47637939 GCACATGGCA
* * *
47637949 GCATCGGCACCTTGGTGGCTCGGATGTTCGAGG-GCCTCGAGCACCATCGGCACCTTGGTGCTTG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCG
* * * *
47638013 GATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTACCACGGATGTGCGGGAGCCTCGAGCAG
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
47638078 CATTGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCTGGGAT
129 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGAT
47638143 GTGCGGGAGCCTCGAGCC
194 GTGCGGGAGCCTCGAGCC
* * * * *
47638161 GCATCGGTACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCGGCATCAGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
*
47638226 ATGTGCGGGAGCCTTGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* *
47638291 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCTGGGAT
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCAGCATCGGCACCTTGGTGCTGGGAT
*
47638355 GTGCGGGAGCCTCGAGCA
194 GTGCGGGAGCCTCGAGCC
* * * * ** *
47638373 GCATCGGCACCTTGGT-GTTGGGATGTGCGGGAGCCTCGAGCAGTATCGACATTTTGTTGCCTCG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCG
* * * * * * *
47638437 GATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCATGTGGGGGAGCCTCGCGCACC
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
47638502 ATCAGCACCTTGTTAGCTCGAATGTCCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGAT
130 ATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGAT
47638567 GTGCGGGAGCCTCGA-CC
194 GTGCGGGAGCCTCGAGCC
* * * *
47638584 AGCATCGGCACCTTAGTGGCTCGGATGTGTGGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTC
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTC
*
47638649 GGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC
64 GGATGTGCGGGAGCCTC-GACCACCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
*
47638713 ACCATCGGCACCTTGGTGCCTGGGATGTGCGGG
127 ACCATCGGCACCTTGGTG-CTTGGATGTGCGGG
47638746 CTAAAGATAA
Statistics
Matches: 506, Mismatches: 68, Indels: 20
0.85 0.11 0.03
Matches are distributed among these distances:
211 73 0.14
212 313 0.62
213 61 0.12
214 59 0.12
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (211 bp):
GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGT
GCGGGAGCCTCGAGCC
Found at i:47643431 original size:43 final size:42
Alignment explanation
Indices: 47643340--47643459 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
47643330 GAGTCTCCGA
*
47643340 CACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGG
1 CACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGG
* **
47643383 CACCTTGGTGCTCGGATGTGTGGGAGCCTCG-GCCAGTATCGG
1 CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGG
*
47643425 CAACCTTGGTGCTCGGATGTGCGGAAGCCTCGAGC
1 C-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
47643460 CCCAAAGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.41
43 38 0.56
44 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (42 bp):
CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:47643707 original size:24 final size:24
Alignment explanation
Indices: 47643673--47643747 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
47643663 CCGGTTAGGT
* *
47643673 TCCCGGCGGTGCTCCGATGATCTA
1 TCCCGGTGGTGCTCCGATGATCCA
*
47643697 TCCCGGTGGTGCTCCGGTGATCCA
1 TCCCGGTGGTGCTCCGATGATCCA
* *
47643721 TCCCAGTGGTGCTCCGACGATCCA
1 TCCCGGTGGTGCTCCGATGATCCA
47643745 TCC
1 TCC
47643748 GGCGGCACTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.36, G:0.28, T:0.24
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGATGATCCA
Found at i:47643902 original size:43 final size:42
Alignment explanation
Indices: 47643873--47644004 Score: 147
Period size: 43 Copynumber: 3.1 Consensus size: 42
47643863 CACATGGCAT
* * *
47643873 CATCGGCACCTTGGTGGCCCGGATGTGCCGGAGCCTCGAGCAC
1 CATCCGCACCTAGGAGG-CCGGATGTGCCGGAGCCTCGAGCAC
*
47643916 CATCCGCACCTAGGAGGTCGGATGTGCCGGAGCCTCGAGCAC
1 CATCCGCACCTAGGAGGCCGGATGTGCCGGAGCCTCGAGCAC
* * * * * * *
47643958 CCTCCGCACCTTGGTGCCTCAGCTGTGCGGGAGCCTCGAGCAC
1 CATCCGCACCTAGGAGGC-CGGATGTGCCGGAGCCTCGAGCAC
47644001 CATC
1 CATC
47644005 GGCAACTTTG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
42 37 0.49
43 38 0.51
ACGTcount: A:0.15, C:0.36, G:0.32, T:0.17
Consensus pattern (42 bp):
CATCCGCACCTAGGAGGCCGGATGTGCCGGAGCCTCGAGCAC
Found at i:47643948 original size:42 final size:43
Alignment explanation
Indices: 47643892--47644004 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 43
47643882 CTTGGTGGCC
*
47643892 CGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGGAG-GT
1 CGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGGAGCCT
* * *
47643934 CGGATGTGCCGGAGCCTCGAGCACCCTCCGCACCTTGGTGCCT
1 CGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGGAGCCT
* * *
47643977 CAGCTGTGCGGGAGCCTCGAGCACCATC
1 CGGATGTGCCGGAGCCTCGAGCACCATC
47644005 GGCAACTTTG
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 37 0.60
43 25 0.40
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (43 bp):
CGGATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGGAGCCT
Found at i:47644567 original size:43 final size:42
Alignment explanation
Indices: 47644473--47644641 Score: 200
Period size: 42 Copynumber: 4.0 Consensus size: 42
47644463 CAAGAGTTTC
* *
47644473 CGGCACCTTGGTGGCTCAGATATGCGGGAGCCTCGAGCACCAT
1 CGGCACCTTGGT-GCTCAGATGTGCGAGAGCCTCGAGCACCAT
*
47644516 CGGCACCTTGGTGCTCAGATGTGTGAGAGCCTCG-GCCACCAT
1 CGGCACCTTGGTGCTCAGATGTGCGAGAGCCTCGAG-CACCAT
* * * *
47644558 CGGCAACCTTGGTGCTCGGATGTACGAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCAGATGTGCGAGAGCCTCGAGCACCAT
*
47644601 CGACACCTTGGTGCT-AGGATGTGCG-GAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTCA-GATGTGCGAG-AGCCTCGAGCACCA
47644642 AAGCTAAAGT
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.55
43 46 0.42
44 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCAGATGTGCGAGAGCCTCGAGCACCAT
Found at i:47644641 original size:85 final size:85
Alignment explanation
Indices: 47644473--47644634 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 85
47644463 CAAGAGTTTC
* * * *
47644473 CGGCACCTTGGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCAGATGT
1 CGGCACCTTGGTGGCTCAGATATACGAGAGCCTCGAGCACCACCGACACCTTGGTGCTCAGATGT
*
47644538 GTGAGAGCCTCGGCCACCAT
66 GGGAGAGCCTCGGCCACCAT
* * *
47644558 CGGCAACCTTGGT-GCTCGGATGTACGAGAGGCTCGAGCACCACCGACACCTTGGTGCT-AGGAT
1 CGGC-ACCTTGGTGGCTCAGATATACGAGAGCCTCGAGCACCACCGACACCTTGGTGCTCA-GAT
47644621 GTGCGGA-AGCCTCG
64 GTG-GGAGAGCCTCG
47644635 AGCACCAAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 1 0.02
85 55 0.83
86 10 0.15
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (85 bp):
CGGCACCTTGGTGGCTCAGATATACGAGAGCCTCGAGCACCACCGACACCTTGGTGCTCAGATGT
GGGAGAGCCTCGGCCACCAT
Found at i:47644879 original size:24 final size:24
Alignment explanation
Indices: 47644851--47644928 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 24
47644841 CCGGTTAGGT
*
47644851 TCCCGGCGGTGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
47644875 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
** * *
47644899 T-CCGATGGCGCTCTGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
47644922 TCCCGGC
1 TCCCGGC
47644929 ATATAGAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 18 0.41
24 26 0.59
ACGTcount: A:0.10, C:0.40, G:0.31, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:47645060 original size:42 final size:43
Alignment explanation
Indices: 47645013--47645115 Score: 154
Period size: 42 Copynumber: 2.4 Consensus size: 43
47645003 TGGTCATGCC
* *
47645013 GGAGCCTCGAGCACCATCCGCACCTAGGAG-GTCGGATGTGCA
1 GGAGCCTCGAGCACCATCCGCACCTAGGAGCCTCAGATGTGCA
* * *
47645055 GGAGCCTCGAGCACCATCCGCACCTTGGTGCCTCAGATGTGCG
1 GGAGCCTCGAGCACCATCCGCACCTAGGAGCCTCAGATGTGCA
47645098 GGAGCCTCGAGCACCATC
1 GGAGCCTCGAGCACCATC
47645116 GGCAACTTTG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 28 0.51
43 27 0.49
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (43 bp):
GGAGCCTCGAGCACCATCCGCACCTAGGAGCCTCAGATGTGCA
Found at i:47645141 original size:43 final size:43
Alignment explanation
Indices: 47645013--47645123 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
47645003 TGGTCATGCC
* * * ** * *
47645013 GGAGCCTCGAGCACCATCCGCACCTAGGAG-GTCGGATGTGCA
1 GGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCAGATGTGCG
* *
47645055 GGAGCCTCGAGCACCATCCGCACCTTGGTGCCTCAGATGTGCG
1 GGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCAGATGTGCG
*
47645098 GGAGCCTCGAGCACCATCGGCAACTT
1 GGAGCCTCGAGCACCATCCGCAACTT
47645124 TGGCCCCTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (43 bp):
GGAGCCTCGAGCACCATCCGCAACTTGGTGCCCCAGATGTGCG
Found at i:47645678 original size:43 final size:42
Alignment explanation
Indices: 47645584--47645752 Score: 209
Period size: 42 Copynumber: 4.0 Consensus size: 42
47645574 CTAGAGTCTC
*
47645584 CGGCACCTTGGTGGCTCA-GATATGCGGAAGCCTCGAGCACCAT
1 CGGCACCTTGGT-GCT-AGGATGTGCGGAAGCCTCGAGCACCAT
*
47645627 CGGCACCTTGGTGCTCA-GATGTGCGGGAGCCTCG-GCCACCAT
1 CGGCACCTTGGTGCT-AGGATGTGCGGAAGCCTCGAG-CACCAT
* * * *
47645669 CGGCAACCTTGGTGCTAGGATGTACGAAAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCAT
*
47645712 CGACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
47645753 AAGCTAAAGT
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 65 0.59
43 44 0.40
44 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (42 bp):
CGGCACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCAT
Found at i:47645997 original size:24 final size:23
Alignment explanation
Indices: 47645962--47646038 Score: 102
Period size: 23 Copynumber: 3.3 Consensus size: 23
47645952 CCAGTTAGGT
*
47645962 TCCCGGCGGTGCTTCTGTGATCCA
1 TCCCGGCGGTGC-TCTGCGATCCA
*
47645986 TCCCGGCAGTGCTCTGACGATCCA
1 TCCCGGCGGTGCTCTG-CGATCCA
47646010 T-CCGGCGGTGCTCTGGCGATCCA
1 TCCCGGCGGTGCTCT-GCGATCCA
47646033 TCCCGG
1 TCCCGG
47646039 TATATAGAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
23 24 0.51
24 23 0.49
ACGTcount: A:0.10, C:0.36, G:0.30, T:0.23
Consensus pattern (23 bp):
TCCCGGCGGTGCTCTGCGATCCA
Found at i:47646190 original size:43 final size:43
Alignment explanation
Indices: 47646138--47646269 Score: 185
Period size: 43 Copynumber: 3.1 Consensus size: 43
47646128 CATATGGCAG
* *
47646138 CATCGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAC
1 CATCCGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAC
* *
47646181 CATCCGCACCTAGGAGG-TCGGATGTGCAGGAGCCTCGAGCAC
1 CATCCGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAC
* ** *
47646223 CATCCGCACCTTGGTGCCTTAGATGTGCAGGAGCCTCAAGCAC
1 CATCCGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAC
47646266 CATC
1 CATC
47646270 GGTAACTTTG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 38 0.49
43 40 0.51
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (43 bp):
CATCCGCACCTTGGTGGCTCGGATGTGCAGGAGCCTCGAGCAC
Found at i:47646822 original size:42 final size:42
Alignment explanation
Indices: 47646739--47646845 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 42
47646729 AAGAGTCTCA
* * *
47646739 GGCACCTTGGTGGCTCAGATATGCGGGAGCCACGAGCACCATC
1 GGCACCTTGGT-GCTCGGATGTGCAGGAGCCACGAGCACCATC
* *
47646782 GGCACCTTGGTGTTCGGATGTGCAGGAGCCTCG-GCCACCATC
1 GGCACCTTGGTGCTCGGATGTGCAGGAGCCACGAG-CACCATC
**
47646824 AACAACCTTGGTGCTCGGATGT
1 GGC-ACCTTGGTGCTCGGATGT
47646846 ACGAGAGGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.02
42 25 0.46
43 28 0.52
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.21
Consensus pattern (42 bp):
GGCACCTTGGTGCTCGGATGTGCAGGAGCCACGAGCACCATC
Found at i:47646900 original size:42 final size:43
Alignment explanation
Indices: 47646797--47646906 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 43
47646787 CTTGGTGTTC
* * *
47646797 GGATGTGCAGG-AGCCTCG-GCCACCATCAACAACCTTGGTGCTC
1 GGATGTGC-GGAAGCCTCGAG-CACCACCAACAACCTTGATGCTA
* * *
47646840 GGATGTAC-GAGAGGCTCGAGCACTACCAACAA-CTTGATGCTA
1 GGATGTGCGGA-AGCCTCGAGCACCACCAACAACCTTGATGCTA
47646882 GGATGTGCGGAAGCCTCGAGCACCA
1 GGATGTGCGGAAGCCTCGAGCACCA
47646907 AAGCTAAAGT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.50
43 25 0.46
44 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.17
Consensus pattern (43 bp):
GGATGTGCGGAAGCCTCGAGCACCACCAACAACCTTGATGCTA
Found at i:47647138 original size:23 final size:23
Alignment explanation
Indices: 47647112--47647180 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
47647102 CCGGTTAGGT
47647112 TCCCGGTGGTGCTCCGGCGATCC
1 TCCCGGTGGTGCTCCGGCGATCC
* * *
47647135 TCCCGGCGGTGCTCCGACGATCGA
1 TCCCGGTGGTGCTCCGGCGATC-C
* *
47647159 T-CCGGTGGTGCTCTGGTGATCC
1 TCCCGGTGGTGCTCCGGCGATCC
47647181 ATCGCGGCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 36 0.97
24 1 0.03
ACGTcount: A:0.07, C:0.35, G:0.35, T:0.23
Consensus pattern (23 bp):
TCCCGGTGGTGCTCCGGCGATCC
Found at i:47647432 original size:41 final size:41
Alignment explanation
Indices: 47647248--47647884 Score: 517
Period size: 41 Copynumber: 15.8 Consensus size: 41
47647238 CACATGGCAG
47647248 CATCGGCACCTTGGTGCTCGGATGT-CGGG-GCCTCGAG-A-
1 CATCGGCACCTTGGTGCT-GGATGTGCGGGAGCCTCGAGCAC
*
47647286 CATCGGCACC-T-GTGCTTGGATGT-CGGGAGCCTC-ACCAC
1 CATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCAC
47647324 CAT-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCA-
1 CATCGGCACCTTGGTGCT-GGATGTGCGGGAGCCTCGAGCAC
* *
47647363 CATC-GCACC-T-G-GCTTGG-TGTGCGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCAC
**
47647400 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCGG
1 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCAC
* * * *
47647441 CATCGGTACCTTGGTACTTGGATGTAC-GGAG-CTCGACCAC
1 CATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCAC
*
47647481 CGTCGGCACCTAAT-G-GCTCGGATGTGCGGGAGCCT-GAGCAC
1 CATCGGCACCT--TGGTGCT-GGATGTGCGGGAGCCTCGAGCAC
*
47647522 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCAC
1 CATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTC-GAGCAC
*
47647564 CATCGGCACCTTGGTGCTGGATGT-CGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCAC
47647604 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCG-GCA-
1 CATCGGCACCTTGGTGCT-GGATGTGCGGGAGCCTCGAGCAC
* *
47647644 CATCGACACC-T-G-GCTCGG-TGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCT-GGATGTGCGGGAGCCTCGAGCAC
* * *
47647682 CATCTGCACCTTGGTGCTTGTATGTGGGGGAGCCTCG-GCAC
1 CATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCAC
* *
47647723 CATCGGCACC-TGTTGGCTCGA--TGCGGGAGCCTCG-GCA-
1 CATCGGCACCTTGGT-GCTGGATGTGCGGGAGCCTCGAGCAC
* *
47647760 CATCGACACCTTGGT-C-GG-TG-GGGGGAGCCTCG-GCCAC
1 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCTCGAG-CAC
* * * *
47647797 CAATCGGCACCTCGGCACCGACCTTTTGGCTCGGATGTCGGGAGCCTCGAGCAG
1 C-ATCGGCACCTTGG---TG--C---TGGAT--G-TG-CGGGAGCCTCGAGCAC
47647851 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCT
1 CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCT
47647885 GACGGCATGG
Statistics
Matches: 492, Mismatches: 44, Indels: 123
0.75 0.07 0.19
Matches are distributed among these distances:
35 28 0.06
36 39 0.08
37 38 0.08
38 59 0.12
39 23 0.05
40 85 0.17
41 119 0.24
42 62 0.13
43 1 0.00
44 1 0.00
45 4 0.01
48 3 0.01
49 1 0.00
50 1 0.00
51 1 0.00
53 13 0.03
54 13 0.03
55 1 0.00
ACGTcount: A:0.14, C:0.30, G:0.36, T:0.20
Consensus pattern (41 bp):
CATCGGCACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCAC
Found at i:47655924 original size:40 final size:40
Alignment explanation
Indices: 47655878--47655958 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
47655868 GCTCGGATGT
47655878 GGGAGCCTCAGCACCATCGGAACC-TGATGCTTGGATGTGC
1 GGGAGCCTCAGCACCATCGGAACCTTGATGC-TGGATGTGC
* * *
47655918 GGGAGCCTCGGCACCATCGGCACCTTGGTGCTGGATGTGC
1 GGGAGCCTCAGCACCATCGGAACCTTGATGCTGGATGTGC
47655958 G
1 G
47655959 AGCATCGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 32 0.86
41 5 0.14
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (40 bp):
GGGAGCCTCAGCACCATCGGAACCTTGATGCTGGATGTGC
Found at i:47656215 original size:21 final size:21
Alignment explanation
Indices: 47656178--47656240 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
47656168 GTTAGGTCCT
47656178 GGTGCTCCGGC-ATCCGTCCGGC
1 GGTGCT-CGGCGA-CCGTCCGGC
*
47656200 GGTGCTCGGCGACCGTCCGTC
1 GGTGCTCGGCGACCGTCCGGC
* *
47656221 -GTGCTCCGTGACCGTTCCGG
1 GGTGCTCGGCGACCG-TCCGG
47656241 AGCATGGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 12 0.34
21 16 0.46
22 7 0.20
ACGTcount: A:0.05, C:0.38, G:0.37, T:0.21
Consensus pattern (21 bp):
GGTGCTCGGCGACCGTCCGGC
Found at i:47656233 original size:20 final size:21
Alignment explanation
Indices: 47656178--47656240 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
47656168 GTTAGGTCCT
47656178 GGTGCTCCG-GCATCCGTCCGGC
1 GGTGCTCCGCG-A-CCGTCCGGC
* *
47656200 GGTGCTCGGCGACCGTCCGTC
1 GGTGCTCCGCGACCGTCCGGC
*
47656221 -GTGCTCCGTGACCGTTCCGG
1 GGTGCTCCGCGACCG-TCCGG
47656241 AGCATGGCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 12 0.35
21 12 0.35
22 9 0.26
23 1 0.03
ACGTcount: A:0.05, C:0.38, G:0.37, T:0.21
Consensus pattern (21 bp):
GGTGCTCCGCGACCGTCCGGC
Found at i:47656520 original size:70 final size:73
Alignment explanation
Indices: 47656426--47656661 Score: 328
Period size: 72 Copynumber: 3.3 Consensus size: 73
47656416 ACCTGTGCAC
*
47656426 CTAGGCCTTGGTCGTGCGGAGCTCGGCACCATCGGCACCTGGTGCTT-GT-T-CGAGCCTCGG-A
1 CTAGCCCTTGGTCGTGCGGAGCTCGGCACCATCGGCACCTGGTGCTTGGTGTGCGAGCCTCGGCA
47656487 CCATCGCA
66 CCATCGCA
47656495 CCTAGCCCTTGGTCGTGCGGAGCTCGG-ACCATCGGCACCTGG-GCTTGGTCGTGCGAGCCTCGG
1 -CTAGCCCTTGGTCGTGCGGAGCTCGGCACCATCGGCACCTGGTGCTTGGT-GTGCGAGCCTCGG
47656558 CACCATCGCA
64 CACCATCGCA
*
47656568 CTGGCCCTTGGTCGTGCGGAGCTCGGCACCATCGGC-CCTAGGT-CTTGGATGTGCGAGCCTCGG
1 CTAGCCCTTGGTCGTGCGGAGCTCGGCACCATCGGCACCT-GGTGCTTGG-TGTGCGAGCCTC-G
47656631 GCACCATCGGCA
63 GCACCATC-GCA
47656643 CTAGGCCCTT-GTCGTGCGG
1 CTA-GCCCTTGGTCGTGCGG
47656662 TGACCATCGC
Statistics
Matches: 151, Mismatches: 3, Indels: 19
0.87 0.02 0.11
Matches are distributed among these distances:
68 4 0.03
69 17 0.11
70 25 0.17
71 1 0.01
72 38 0.25
73 36 0.24
74 10 0.07
75 14 0.09
76 6 0.04
ACGTcount: A:0.12, C:0.34, G:0.33, T:0.21
Consensus pattern (73 bp):
CTAGCCCTTGGTCGTGCGGAGCTCGGCACCATCGGCACCTGGTGCTTGGTGTGCGAGCCTCGGCA
CCATCGCA
Found at i:47656523 original size:36 final size:39
Alignment explanation
Indices: 47656401--47656661 Score: 235
Period size: 36 Copynumber: 7.2 Consensus size: 39
47656391 CCTCGACCTT
*
47656401 GTGCGGGAGCCTCGG-ACC-T-GTGCACCTAGGCCTTGGTC
1 GTGC-GGAGCCTCGGCACCATCG-GCACCTAGCCCTTGGTC
* **
47656439 GTGCGGAG-CTCGGCACCATCGGCACCTGGTGCTT-GT-
1 GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGGTC
47656475 -T-C-GAGCCTCGG-ACCATC-GCACCTAGCCCTTGGTC
1 GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGGTC
**
47656509 GTGCGGAG-CTCGG-ACCATCGGCACCT-GGGCTTGGTC
1 GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGGTC
*
47656545 GTGC-GAGCCTCGGCACCATC-GCA-CTGGCCCTTGGTC
1 GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGGTC
**
47656581 GTGCGGAG-CTCGGCACCATCGGC-CCTAGGTCTTGGAT-
1 GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGG-TC
47656618 GTGC-GAGCCTCGGGCACCATCGGCA-CTAGGCCCTT-GTC
1 GTGCGGAGCCTC-GGCACCATCGGCACCTA-GCCCTTGGTC
47656656 GTGCGG
1 GTGCGG
47656662 TGACCATCGC
Statistics
Matches: 185, Mismatches: 15, Indels: 45
0.76 0.06 0.18
Matches are distributed among these distances:
32 10 0.05
33 11 0.06
34 6 0.03
35 7 0.04
36 64 0.35
37 45 0.24
38 36 0.19
39 6 0.03
ACGTcount: A:0.12, C:0.34, G:0.34, T:0.20
Consensus pattern (39 bp):
GTGCGGAGCCTCGGCACCATCGGCACCTAGCCCTTGGTC
Found at i:47661376 original size:42 final size:41
Alignment explanation
Indices: 47661117--47661870 Score: 551
Period size: 42 Copynumber: 18.0 Consensus size: 41
47661107 CCAGGCACCA
* *
47661117 AGGTGCCGATGGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCA
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCT
* * ** * * *
47661160 AGTTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG--GCCT
* * * *
47661203 AGGTGCCGATGCTGCCCGAGGCTCCCGCAC-ATCCGAGCCACCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG--GCCT
*
47661246 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCG
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT
*
47661287 AGGTGCCGATGGTGGCCGAGGC-CCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCT
** * * *
47661328 ATTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGTCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT
* *
47661369 AGGTTGCCGATGGTGCCCGAGG-T-CCGCAC-ATCCAAGCACCA
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCT
* *
47661410 AGGTGTCGATGGTGCACGAGGCTCCCGCACGA-CAAGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT
*
47661450 A-GTGCCGATGGTG-CCGAGGCTCCCGCAC-ATCC-AGCACCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCT
47661489 AGGTGCCGA-GGTTG-CCGATGG-TGGGCTCCGCACGACC-AGGCC-
1 AGGTGCCGATGG-TGCCCGA-GGCT---C-CCGCACGACCAAGGCCT
* * * * * * *
47661531 AGGTGTCGATGGTGCGCGAGGTTCTCGGAC-ATCCAAGCACCA
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCT
*
47661573 AGGTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCT
** * * * * *
47661615 AGGTTGCCGACAGTGTCCGAGGCTCCCGC-CCATCATAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AG-GCCT
47661658 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCT
* * *
47661700 AGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCT
* * ** *
47661743 AGGTGCCGATGGCGCCCGAGGCTCCTGCAATACCAAGGGCTT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCT
* * * * * *
47661785 AGTTTGCCGATGGTGTCCGGGGCTCCTGCAC-ATCCTA-GCACC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGC-CT
47661827 AGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCT
47661870 A
1 A
47661871 TGCTACCGGA
Statistics
Matches: 573, Mismatches: 89, Indels: 98
0.75 0.12 0.13
Matches are distributed among these distances:
37 1 0.00
38 17 0.03
39 25 0.04
40 59 0.10
41 66 0.12
42 198 0.35
43 193 0.34
44 13 0.02
45 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (41 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT
Found at i:47661656 original size:85 final size:83
Alignment explanation
Indices: 47661117--47661870 Score: 782
Period size: 85 Copynumber: 9.0 Consensus size: 83
47661107 CCAGGCACCA
* *
47661117 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGCCCGAGGC
** * ** *
47661182 TCCCGCACCTCCTAGCCACCG
64 TCCCGCACGACCAAG-GGCCT
* *
47661203 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACAT-CAAG-CACCAAGGTGCCGATGGTGCCCGAGGC
*
47661268 TCCCGCACGACCAA-GGCCG
64 TCCCGCACGACCAAGGGCCT
* * ** * ** *
47661287 AGGTGCCGATGGTGGCCGAGGC-CCCGCACGACCAAGGGCCTATTTGCCGATGGTGCCCGAGCCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* *
47661351 CTCGCACGACCAA-GGTCT
65 CCCGCACGACCAAGGGCCT
* *
47661369 AGGTTGCCGATGGTGCCCGAGG-T-CCGCACATCCAAGCACCAAGGTGTCGATGGTGCACGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGCCCGAGGC
47661432 TCCCGCACGA-CAA-GGCCT
64 TCCCGCACGACCAAGGGCCT
* *
47661450 A-GTGCCGATGGTG-CCGAGGCTCCCGCACATCCAGCACCTAGGTGCCGA-GGTTG-CCGATGG-
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCAAGCACCAAGGTGCCGATGG-TGCCCGA-GGC
47661510 TGGGCTCCGCACGACC-A-GGCC-
64 T---C-CCGCACGACCAAGGGCCT
* * * * * *
47661531 AGGTGTCGATGGTGCGCGAGGTTCTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
47661596 CCCGCACGACCAAGGGCCT
65 CCCGCACGACCAAGGGCCT
** * * *
47661615 AGGTTGCCGACAGTGTCCGAGGCTCCCGCCCATCATAGCACCGAGGTGCCGATGGTGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCA-AGCACCAAGGTGCCGATGGTGCCCGAGGC
47661680 TCCCGCACGACCAAGGGCCT
64 TCCCGCACGACCAAGGGCCT
* *
47661700 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATC-AAGCACCAAGGTGCCGATGGTGCCCGAGGC
* ** *
47661765 TCCTGCAATACCAAGGGCTT
64 TCCCGCACGACCAAGGGCCT
* * * * * *
47661785 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAGGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACAT-CAAGCACCAAGGTGCCGATGGTGCCCGAGGC
47661850 TCCCGCACGACCAAGGGCCT
64 TCCCGCACGACCAAGGGCCT
47661870 A
1 A
47661871 TGCTACCGGA
Statistics
Matches: 562, Mismatches: 78, Indels: 57
0.81 0.11 0.08
Matches are distributed among these distances:
78 12 0.02
79 31 0.06
80 9 0.02
81 21 0.04
82 104 0.19
83 45 0.08
84 49 0.09
85 243 0.43
86 48 0.09
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (83 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTC
CCGCACGACCAAGGGCCT
Found at i:47661951 original size:24 final size:24
Alignment explanation
Indices: 47661875--47661953 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
47661865 GGCCTATGCT
* *
47661875 ACCGGAACGGTTCACCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
47661899 GA-CGGGACGGTTCGCCGGAGCACC
1 -ACCGGGACGGTTCGCCGGAGCACC
* *
47661923 GCCGGGACGGATCGCCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
47661947 ACCGGGA
1 ACCGGGA
47661954 ACCTAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.38, T:0.06
Consensus pattern (24 bp):
ACCGGGACGGTTCGCCGGAGCACC
Found at i:47662245 original size:42 final size:42
Alignment explanation
Indices: 47662172--47662370 Score: 179
Period size: 42 Copynumber: 4.7 Consensus size: 42
47662162 TTGGTGCTGA
*
47662172 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTCTCCG
1 AGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTCTCCG
* ** * * * *
47662214 AGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGGTGGTGTCCG
1 AGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGGTCTCCG
* *
47662256 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCT-CG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT-CTCCG
* * ** *
47662298 AGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGGCTG
1 AGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTCTCCG
* *
47662341 AGGCTCCCACACATCCGAGCCACCAAGGTG
1 AGGCTCCCGCACATCCAAG-CACCAAGGTG
47662371 ATGGAGGCTC
Statistics
Matches: 123, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
41 10 0.08
42 65 0.53
43 41 0.33
44 7 0.06
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.17
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTCTCCG
Found at i:47670350 original size:85 final size:81
Alignment explanation
Indices: 47670233--47671048 Score: 416
Period size: 85 Copynumber: 10.0 Consensus size: 81
47670223 TTTTCTTTAG
* * * *
47670233 CCCGCACATCCGAGGCACCAGGGTGCC-CTGCTGCTCGAGGCAT-CCGCACATCCAACATCCTAG
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGCTGCTCGAGGC-TCCCGCACA-CCAACA-CCAAG
*
47670296 GTTGCCTATGGTGTCCGAGGCT
62 G-TGCCGATGGTG-CCGAGGCT
* * *
47670318 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAGGCAGCAAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACA-CC-A-ACACCAAGG
47670383 TGCCGATGGTGCCCGAGGCT
63 TGCCGATGGTG-CCGAGGCT
** * * * ** *
47670403 CCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGC-CGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCAC-ACCAA-CACCAAG
*
47670466 TTGCCGATGGTGCCGA-GCT
62 GTGCCGATGGTGCCGAGGCT
* * * * *
47670485 -CCG-ACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCT-CCGCACACCAGCACCAAGGTGT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACACCAACACCAAGGTGC
47670547 CGATGGTGCCGAGGCT
66 CGATGGTGCCGAGGCT
** * * * * *
47670563 CCCGCACGA--C-AGGGCCTAGTTGCCGATGGTGC-CGAGGCTCCCGCACACC-A-GCCTAGG-G
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACACCAACACCAAGGTG
47670621 CCGATGGTGCCGAGGCT
65 CCGATGGTGCCGAGGCT
** * * * *** *
47670638 CCCGCACGA-CCAAGGGCCTAGGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGCTAG
1 CCCGCAC-ATCCAAGCACCAAGG--TGCCGATGCTGCTCGAGGCTCCCGCAC-ACCAACACCAAG
*
47670701 TTGCCGATGGTGCCCGAGGCCT
62 GTGCCGATGGTG-CCGAGG-CT
* ** * * *
47670723 CTCGCACGA-CCAAGGGCCTAGGTTG-CGATGGTGC-CGAGGCT-CCG-ACATCAAGC-CCAAGG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCACACCAA-CACCAAGG
47670782 TGCCGATGGTGTCCGAGGCT
63 TGCCGATGGTG-CCGAGGCT
* ** * * * * *
47670802 CCCGTACGA-CCAAGGGCCTAGGTTGCCGGTG-T-C-CGAGGCTCCCGC-CATCATGCACCGAGG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCCGCACACCA-ACACCAAGG
47670862 TGCCGATGGTGCCCGAGGCT
63 TGCCGATGGTG-CCGAGGCT
* ** * * * * * ** *
47670882 CCCGTACGA-CCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGTCCTAGA
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCAC-ACCAA-CACCAAG-
* *
47670946 TTGCCAATGG-GCCGAGGCT
62 GTGCCGATGGTGCCGAGGCT
* ** * * * * *
47670965 CTCGCACATCCTTGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACATCGAGC-CCAAGGTG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACA-CCAACACCAAGGTG
* *
47671029 CTGATGGTCACCGAGGCT
65 CCGATGGT-GCCGAGGCT
47671047 CC
1 CC
47671049 TGACAACCAG
Statistics
Matches: 603, Mismatches: 85, Indels: 89
0.78 0.11 0.11
Matches are distributed among these distances:
75 26 0.04
76 6 0.01
77 34 0.06
78 41 0.07
79 77 0.13
80 115 0.19
81 16 0.03
82 37 0.06
83 71 0.12
84 46 0.08
85 116 0.19
86 16 0.03
87 2 0.00
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (81 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACACCAACACCAAGGTGC
CGATGGTGCCGAGGCT
Found at i:47670364 original size:42 final size:41
Alignment explanation
Indices: 47670233--47671048 Score: 513
Period size: 42 Copynumber: 20.0 Consensus size: 41
47670223 TTTTCTTTAG
* * * *
47670233 CCCGCACATCCGAGGCACCAGGGTGCC-CTGCTGCTCGAGGCAT
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGGTGC-CGAGGC-T
* *
47670276 -CCGCACATCCAA-CATCCTAGGTTGCCTATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCA-CCAAGG-TGCCGATGGTG-CCGAGGCT
* *
47670318 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CGAGGCT
* *
47670360 CCCGCACATCCGAGGCAGCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCC-AAGCACCAAGGTGCCGATGGTG-CCGAGGCT
** * *
47670403 CCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCT
** * *
47670445 CCCGCACGA-CCAAGGGCCTAGTTGCCGATGGTGCCGA-GCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
*
47670485 -CCG-ACATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCT
*
47670525 -CCGCACA-CC-AGCACCAAGGTGTCGATGGTGCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
** * *
47670563 CCCGCACGA--C-AGGGCCTAGTTGCCGATGGTGCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
*
47670602 CCCGCACA-CC-AG--CCTAGG-GCCGATGGTGCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
** *
47670638 CCCGCACGA-CCAAGGGCCTAGGTTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG--TGCCGATGGTG-CCGAGGCT
** * *
47670682 CCCGCACGA-CC-AG-GGCTAGTTGCCGATGGTGCCCGAGGCCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTG-CCGAGG-CT
* ** *
47670723 CTCGCACGA-CCAAGGGCCTAGGTTG-CGATGGTGCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCT
47670764 -CCG-ACAT-CAAGC-CCAAGGTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCT
* ** * *
47670802 CCCGTACGA-CCAAGGGCCTAGGTTGCCGGT-GT-CCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCT
* *
47670842 CCCGC-CAT-CATGCACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCT
* ** * *
47670882 CCCGTACGA-CCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCT
* ** * * *
47670924 CCCGTACGA-CCAAGGTCCTAGATTGCCAATGG-GCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCGAGGCT
* ** *
47670965 CTCGCACATCCTTGCACCAAGGTGCCGATGGTGCCCAAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCT
* * *
47671007 CCCGCACAT-CGAGC-CCAAGGTGCTGATGGTCACCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGT-GCCGAGGCT
47671047 CC
1 CC
47671049 TGACAACCAG
Statistics
Matches: 646, Mismatches: 76, Indels: 105
0.78 0.09 0.13
Matches are distributed among these distances:
36 27 0.04
37 28 0.04
38 56 0.09
39 73 0.11
40 99 0.15
41 67 0.10
42 161 0.25
43 109 0.17
44 26 0.04
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (41 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
Found at i:47670868 original size:279 final size:284
Alignment explanation
Indices: 47670298--47670971 Score: 762
Period size: 279 Copynumber: 2.4 Consensus size: 284
47670288 CATCCTAGGT
* * * * * * *
47670298 TGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTGCCGATGGTGCCCGAGGCTCC
* * *
47670362 CGCAC-ATCCGA-GGCAGCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
64 CGCACGA-CCAAGGGC--CTAGATTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
47670424 GTTACCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCGAGCTCCGA
126 GTTACCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCGAGCTCCGA
* *
47670489 CATCCAAGCACGAAGGTGCCGATGGTGCCCGAGGCTCCGCACACCAGCACCAAGGTGTCGATGGT
191 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCGCACACCAGCACCAAGGTGCCGATGGT
** * *
47670554 GCCGAGGCTCCCGCACGACAGGGCCTAGT
256 GCCGAGGCTCCCGCACGACAGCACCGAGG
47670583 TGCCGATGGTG-CCGAGGCTCCCGCAC-ACC-A-GCCTAGG-GCCGATGGTG-CCGAGGCTCCCG
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCG
* *
47670642 CACGACCAAGGGCCTAGGTTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGG-CTA-GTTG
66 CACGACCAAGGGCCTA-GATTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
*
47670704 CCGATGGTGCCCGAGGCCTCTCGCACGACCAAGGGCCTAGGTTG-CGATGGTGCCGAGGCTCCGA
130 CCGATGGTG-CCGAGG-CTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTGCCGA-GCTCCGA
* * ** * *
47670768 CAT-CAAGC-CCAAGGTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGG
191 CATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT-CCGCAC-ACC-AGCACCAAGG-TGCCGA
47670831 T-GT-CCGAGGCTCCCGC-C-ATCATGCACCGAGG
252 TGGTGCCGAGGCTCCCGCACGA-CA-GCACCGAGG
* *
47670862 TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTGCCGATGGTGCCCGAGGCTCCC
* * * *
47670927 GTACGACCAAGGTCCTAGATTGCCAATGG-G-CCGAGGCTCTCGCAC
65 GCACGACCAAGGGCCTAGATTGCCGATGGTGCCCGAGGCTCCCGCAC
47670972 ATCCTTGCAC
Statistics
Matches: 338, Mismatches: 30, Indels: 44
0.82 0.07 0.11
Matches are distributed among these distances:
276 12 0.04
277 36 0.11
278 68 0.20
279 89 0.26
280 28 0.08
281 8 0.02
282 2 0.01
283 16 0.05
284 24 0.07
285 29 0.09
286 26 0.08
ACGTcount: A:0.18, C:0.34, G:0.33, T:0.15
Consensus pattern (284 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCG
CACGACCAAGGGCCTAGATTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTAC
CGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCGAGCTCCGACATCC
AAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCGCACACCAGCACCAAGGTGCCGATGGTGCCGA
GGCTCCCGCACGACAGCACCGAGG
Found at i:47677831 original size:180 final size:178
Alignment explanation
Indices: 47677523--47677877 Score: 507
Period size: 180 Copynumber: 2.0 Consensus size: 178
47677513 TTTTAATTGA
* * * * * * *
47677523 AAATTTTTCCTGTTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGCATGGT
1 AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCACGACGACACGGC
*
47677588 AGAAAATTGAACAAGTGCTCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCCGGCCCCC
66 AGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCCGG-CCCC
* * * *
47677653 GTTGTGCCATGTTTCCCGA-GGGGCGGCACGGTCAAGTGTCTAACTTAG
130 GTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACTTAG
* * *
47677701 AAATTTTTTCTGTTCGCCCAAAACAAATACAAGAGGCCGAATGAAGTATGGCACGACACGACACG
1 AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCACG--ACGACACG
*
47677766 GCAGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCA-CTGCACCACCACGGCC
64 GCAGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACC-CGGCC
*
47677830 CCGTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
128 CCGTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACT
47677878 AACTCCTTAC
Statistics
Matches: 156, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
178 49 0.31
179 30 0.19
180 77 0.49
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (178 bp):
AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCACGACGACACGGC
AGAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCCGGCCCCG
TTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTCTAACTTAG
Found at i:47684398 original size:43 final size:42
Alignment explanation
Indices: 47684351--47685152 Score: 623
Period size: 43 Copynumber: 19.1 Consensus size: 42
47684341 CCCTGCTGCT
* * *
47684351 CGAGGCAT-CCGCACATCCAACGTCCTAGGTTGCCTATGGTGTC
1 CGAGGC-TCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* ** * * *
47684394 CGAGGCTCCCACACATCCAAGCACC-AAG-TGCCAATGCTG-C
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
47684434 TCGAGGCTCCCGCACATCCGA-GGCAGC-AAG-TGCCGATGGTGCC
1 -CGAGGCTCCCGCACA-CCAAGGGC--CTAGGTTGCCGATGGTGTC
* * *
47684477 CGAGGCT-CCGCATGACCAAGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCA-CACCAAGGGCCTAGGTTGCCGATGGTGTC
47684519 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* ** ** * *
47684562 CGAGGCTCCCGTACATCCAAGCACGAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* *
47684604 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTG-C
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
47684646 CGAGTCTCCCGCATGACC-AGCGGCCTAGG-TGCCGATGGT-AC
1 CGAGGCTCCCGCA-CACCAAG-GGCCTAGGTTGCCGATGGTGTC
* * * *
47684687 TGAGACTCCCGCAGGACC-AGGTGCCTAGGTTGCCGATGATGTC
1 CGAGGCTCCCGCA-CACCAAGG-GCCTAGGTTGCCGATGGTGTC
*
47684730 CGAGGCTTCCGCACATCCAAGGGCCTA-GTTGCCGATGGTGTC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * * *
47684772 CGAGGCTCCCGTACATCTAA-TGCCAAGG-TGCCGATGGTGTC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
*
47684813 CGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCG-TGGGTGTC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGAT-GGTGTC
*
47684856 CGAGGCTCCCGCACGACCAA-GGCCTAGG-TGCGGATGGTG-C
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* *
47684896 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* *
47684939 CGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
47684982 CGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTG-C
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
* ** ** *
47685024 CGAGGCTCTCGCACATCCTTGCACCAAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * ** * * **
47685065 CAAGGCTCCCGCACATCCGA-CACCAAGG-TGCTGATGGTCAC
1 CGAGGCTCCCGCACA-CCAAGGGCCTAGGTTGCCGATGGTGTC
* * *
47685106 CGAGGCTCCTGCACAACCAAGAGCCTAGTTTG-CGATGGTGTC
1 CGAGGCTCCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTC
47685148 CGAGG
1 CGAGG
47685153 TGTCCGAGGC
Statistics
Matches: 634, Mismatches: 89, Indels: 73
0.80 0.11 0.09
Matches are distributed among these distances:
40 41 0.06
41 166 0.26
42 210 0.33
43 214 0.34
44 3 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (42 bp):
CGAGGCTCCCGCACACCAAGGGCCTAGGTTGCCGATGGTGTC
Found at i:47684443 original size:41 final size:42
Alignment explanation
Indices: 47684393--47684485 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
47684383 CCTATGGTGT
47684393 CCGAGGCTCCCACACATCC-AAGCACCAAGTGCCAATGCTGC
1 CCGAGGCTCCCACACATCCGAAGCACCAAGTGCCAATGCTGC
* * * * * *
47684434 TCGAGGCTCCCGCACATCCGAGGCAGCAAGTGCCGATGGTGC
1 CCGAGGCTCCCACACATCCGAAGCACCAAGTGCCAATGCTGC
47684476 CCGAGGCTCC
1 CCGAGGCTCC
47684486 GCATGACCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 17 0.39
42 27 0.61
ACGTcount: A:0.22, C:0.39, G:0.27, T:0.13
Consensus pattern (42 bp):
CCGAGGCTCCCACACATCCGAAGCACCAAGTGCCAATGCTGC
Found at i:47684754 original size:126 final size:128
Alignment explanation
Indices: 47684464--47685037 Score: 692
Period size: 126 Copynumber: 4.5 Consensus size: 128
47684454 AGGCAGCAAG
* *
47684464 TGCCGATGGTGCCCGAGGCT-CCGCATGACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCC
** **
47684528 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCACGAAGG-
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGA-CCAAGGGCCTAGGT
* * * *
47684591 TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCGAGTCTCCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
* * * * * *
47684656 GCATGACC-AGCGGCCTAGG-TGCCGATGGT-ACTGAGACTCCCGCAGGACC-AGGTGCCTAGGT
66 GCACGACCAAG-GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGG-GCCTAGGT
* * *
47684717 TGCCGATGATGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTA-GTTGCCGATGGTGTCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTC
* * * *
47684780 CCGTAC-ATCTAA-TGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGG
64 CCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGG
47684842 T
128 T
* * *
47684843 TGCCG-TGGGTGTCCGAGGCTCCCGCACGACCAA-GGCCTAGG-TGCGGATGGTGCCGAGGCTCT
1 TGCCGAT-GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCC
*
47684905 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGT
* * * *
47684969 TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGCTCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
47685034 GCAC
66 GCAC
47685038 ATCCTTGCAC
Statistics
Matches: 382, Mismatches: 45, Indels: 39
0.82 0.10 0.08
Matches are distributed among these distances:
124 18 0.05
125 71 0.19
126 181 0.47
127 57 0.15
128 55 0.14
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (128 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCC
GCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGT
Found at i:47685071 original size:126 final size:127
Alignment explanation
Indices: 47684374--47685152 Score: 676
Period size: 126 Copynumber: 6.2 Consensus size: 127
47684364 CATCCAACGT
* * * * *
47684374 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCACACATCCAAGCACCAA-GTGCCAATGCTG-CTCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAAGCGCCAAGGTGCCGATGGTGTC-CG
* * * *
47684437 AGGCTCCCGCAC-ATCCGA-GGCAGC-AAG-TGCCGATGGTGCCCGAGGCT-CCGCATGACCAAG
64 AGGCTCCCGTACGA-CCAAGGGC--CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
47684497 GG
126 GG
* * * *
47684499 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAAGCGCCAAGG-TGCCGATGGTGTCCG
** ** * *
47684564 AGGCTCCCGTAC-ATCCAAGCACGAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAGGGG
64 AGGCTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * *
47684627 CCTAGGTTACCGATGGTG-CCGAGTCTCCCGCATGACC-AGCGGCCTAGGTGCCGATGGT-ACTG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA-CACCAAGC-GCCAAGGTGCCGATGGTGTCCG
* * * * * *
47684689 AGACTCCCGCAGGACC-AGGTGCCTAGGTTGCCGATGATGTCCGAGGCTTCCGCAC-ATCCAAGG
64 AGGCTCCCGTACGACCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
47684752 G
127 G
* * *
47684753 CCTA-GTTGCCGATGGTGTCCGAGGCTCCCGTACATCTAA-TGCCAAGGTGCCGATGGTGTCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAAGCGCCAAGGTGCCGATGGTGTCCGA
*
47684816 GGCTCCCGTACGACCAAGGGCCTAGGTTGCCG-TGGGTGTCCGAGGCTCCCGCACGACCAA-GG
65 GGCTCCCGTACGACCAAGGGCCTAGGTTGCCGAT-GGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
47684878 CCTAGG-TGCGGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ACCAAGCGCCAAGG-TGCCGATGGTGTCCG
* *
47684941 AGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGT
64 AGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
47685005 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCACATCCTTGCACCAAGGTGCCGATGGTG-CCAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-CCAAGCGCCAAGGTGCCGATGGTGTCCGA
* * ** * * * * *
47685068 GGCTCCCGCAC-ATCCGA-CACCAAGG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAG
65 GGCTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
*
47685129 CCTAGTTTG-CGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGTCCGAGG
47685153 TGTCCGAGGC
Statistics
Matches: 543, Mismatches: 80, Indels: 63
0.79 0.12 0.09
Matches are distributed among these distances:
123 8 0.01
124 60 0.11
125 115 0.21
126 199 0.37
127 96 0.18
128 65 0.12
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (127 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACACCAAGCGCCAAGGTGCCGATGGTGTCCGAG
GCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:47685480 original size:24 final size:24
Alignment explanation
Indices: 47685453--47685499 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
47685443 TTCCGGGATG
47685453 GCTCACCGGAGCACCGCCGGGAAA
1 GCTCACCGGAGCACCGCCGGGAAA
*
47685477 GCTCGCCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
47685500 CCTAACCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.36, T:0.04
Consensus pattern (24 bp):
GCTCACCGGAGCACCGCCGGGAAA
Found at i:47701995 original size:43 final size:42
Alignment explanation
Indices: 47701925--47702764 Score: 393
Period size: 43 Copynumber: 20.2 Consensus size: 42
47701915 TCTTCTTTAG
* *
47701925 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCACCAAGTTGCCGAT-GGTGCCCGAGGCT
*
47701969 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * * * *
47702011 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
* *
47702054 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGTTGCCGATGGTGCCCGAGGCT
** * * * *
47702097 CCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCC
1 CCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** *
47702139 CCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* *** *
47702182 CTCGCACGA-CCAAGGGTCTAGTTG-C-AT-GTGCCCGA-G-T
1 CCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * *
47702219 TCCGCA-A-CCAAGCACCAAG-TGTCGATGGT-CACGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* * *
47702257 CCCGCCACGA-CCAAAG-GCCTAGTTTGCCGAT-GTGTCCG-GGCT
1 CCCG-CAC-ATCC-AAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* * ** *
47702299 CCC-CACATCCCCAGCA-CTAGGAGCCGATGGTGGCCGA-GCT
1 CCCGCACAT-CCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** **
47702339 CCCGCACGA-CCAAGGGCCATTTTGCCGAT-GTGCCC--GGCT
1 CCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
** ** * *
47702378 CCCGCACGA-CCAAGGGCTTAGTT--TGAGGGTGCCCGA-GCT
1 CCCGCAC-ATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* *** ** * * * *
47702417 CTCGCACGGACAAGGGCCTAGGTTGTCGATGGGTGCGCGAGGTT
1 CCCGCACATCCAAGCACC-AAGTTGCCGAT-GGTGCCCGAGGCT
* * * *
47702461 CTCGGACATCCAA-CACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
* ** * ** *
47702502 CCCGCACGACCCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCCT
1 CCCGCAC-ATCCAAGCACC-AAGTTGCCGATGGTGCCCGAGG-CT
* * *
47702547 CCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCACCAAGTTGCCGATGGTGCCCGAGGCT
** *
47702589 CCCGCACGGA-CCAAGGGCCTAGGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC--ATCCAAGCACC-A-AGTTGCCGATGGTGCCCGAGGCT
* * *
47702634 CCCGCACATCCGAAGCACCGAGGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACATCC-AAGCACC-AAGTTGCCGATGGTGCCCGAGGCT
* * ** *
47702678 CCTGCA-ATACCAAG-GCTTAGTTTG-CGATGGTGTCCG-GGCT
1 CCCGCACAT-CCAAGCACCAAG-TTGCCGATGGTGCCCGAGGCT
* * * *
47702718 CCTGCACATCCTAGCACCAGGGTGCCGAT-GTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
47702759 -CCGCAC
1 CCCGCAC
47702765 GACAAGGGCC
Statistics
Matches: 611, Mismatches: 134, Indels: 106
0.72 0.16 0.12
Matches are distributed among these distances:
34 2 0.00
35 10 0.02
36 6 0.01
37 10 0.02
38 10 0.02
39 55 0.09
40 62 0.10
41 59 0.10
42 107 0.18
43 173 0.28
44 75 0.12
45 42 0.07
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGTTGCCGATGGTGCCCGAGGCT
Found at i:47702121 original size:85 final size:84
Alignment explanation
Indices: 47701945--47702776 Score: 657
Period size: 85 Copynumber: 10.0 Consensus size: 84
47701935 CCAGGCACCA
* *
47701945 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
** * ** *
47702010 TCCCGCACCTCCTAGCCACCG
65 TCCCGCACGACCAAG-GGCCT
* *
47702031 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGC
*
47702096 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* * ** *** *
47702116 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGG
* *
47702180 CTCTCGCACGACCAAGGGTCT
64 CTCCCGCACGACCAAGGGCCT
* * * *
47702201 AGTTG-C-AT-GTGCCCGA-G-TTCCGCA-A-CCAAGCACCAA-GTGTCGATGGT-CACGAGGCT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
*
47702257 CCCGCCACGACCAAAGGCCT
66 CCCG-CACGACCAAGGGCCT
* * * * * *
47702277 AGTTTGCCGAT-GTGTCCG-GGCTCCC-CACATCCCCAGCA-CTAGGAGCCGATGGTGGCCGA-G
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACAT-CCAAGCACCAAGGTGCCGATGGTGCCCGAGG
47702337 CTCCCGCACGACCAAGGGCC-
64 CTCCCGCACGACCAAGGGCCT
** ** ** ** *
47702357 ATTTTGCCGAT-GTGCCC--GGCTCCCGCACGA-CCAAGGGCTTA-GT-TTGAGGGTGCCCGA-G
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGG
*
47702415 CTCTCGCACGGA-CAAGGGCCT
64 CTCCCGCAC-GACCAAGGGCCT
* * * * * *
47702436 AGGTTGTCGATGGGTGCGCGAGGTTCTCGGACATCCAA-CACCAAGGTGCCGATGGTGCTCGAGG
1 AGG-TGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGG
47702500 CTCCCGCACGACCCAAGGGCCT
64 CTCCCGCACGA-CCAAGGGCCT
** * * *
47702522 AGGTTGCCGACAGTGTCCGAGGCCTCCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAG
1 AGG-TGCCGATGGTGCCCGAGG-CTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAG
47702586 GCTCCCGCACGGACCAAGGGCCT
63 GCTCCCGCAC-GACCAAGGGCCT
* *
47702609 AGGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCGAAGCACCGAGGGTGCCGATGGCGCCCGA
1 A-GG-TGCCGATGGTGCCCGAGGCTCCCGCACATCC-AAGCACC-AAGGTGCCGATGGTGCCCGA
* ** *
47702674 GGCTCCTGCAATACCAA-GGCTT
62 GGCTCCCGCACGACCAAGGGCCT
* * * * *
47702696 AGTTTG-CGATGGTGTCCG-GGCTCCTGCACATCCTAGCACCAGGGTGCCGAT-GTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
47702758 T-CCGCACGA-CAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
47702776 A
1 A
47702777 TGCTACCGAA
Statistics
Matches: 601, Mismatches: 104, Indels: 88
0.76 0.13 0.11
Matches are distributed among these distances:
75 10 0.02
76 24 0.04
77 4 0.01
78 36 0.06
79 35 0.06
80 38 0.06
81 33 0.05
82 43 0.07
83 25 0.04
84 29 0.05
85 129 0.21
86 77 0.13
87 59 0.10
88 32 0.05
89 27 0.04
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:47702166 original size:128 final size:123
Alignment explanation
Indices: 47701925--47702776 Score: 518
Period size: 128 Copynumber: 6.8 Consensus size: 123
47701915 TCTTCTTTAG
* *
47701925 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAG
1 CCCGCACAT-CCAAGCACCTAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACC-AG
* ** * ** * *
47701990 TTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCGAG-GTGCCGATGCTGCCCGAGGCT
62 GTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG-GGCCTAGTTTGCCGATG-TGCCCGAGGCT
* * **
47702054 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGG
1 CCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACC-AGG
* * *
47702119 TGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCT
63 TGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGAT-GTGCCCGAGGCT
* *** * * *
47702182 CTCGCACGA-CCAAGGGTCTAGTTG-C-AT-GTGCCCGA-G-TTCCGCA-ACCAAGCACCAAGTG
1 CCCGCAC-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCAGGTG
* * *
47702240 TCGATGGT-CACGAGGCTCCCGCCACGACCAAAGGCCTAGTTTGCCGATGTGTCCG-GGCT
65 CCGATGGTGC-CGAGGCTCCCG-CACGACCAAGGGCCTAGTTTGCCGATGTGCCCGAGGCT
* * * ** **
47702299 CCC-CACATCCCCAGCA-CTAGGAGCCGATGGTGGCCGA-GCTCCCGCACGACCAAGGGCCATTT
1 CCCGCACAT-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCACCA-GG
* * * *
47702361 TGCCGAT-GTGCC-CGGCTCCCGCACGACCAAGGGCTTAGTTTG-AG-GGTGCCCGA-GCT
63 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGTGCCCGAGGCT
* *** ** * * * * *
47702417 CTCGCACGGACAAGGGCCTAGGTTGTCGATGGGTGCGCGAGGTTCTCGGACATCCAA-CACCAAG
1 CCCGCACATCCAAGCACCTAGG-TGCCGAT-GGTGCCCGAGGCTCCCGCACA-CCAAGCACC-AG
* * *
47702481 GTGCCGATGGTGCTCGAGGCTCCCGCACGACCCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCC
62 GTGCCGATGGTGC-CGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGA-TGTGCCCGAGG-C
47702546 T
123 T
* * **
47702547 CCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGGACCAAGGGCCTAG
1 CCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC--ACCAAGCACC-A-
** * ** *
47702611 GGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCGAAGCACCGAGGGTGCCGATGGCGCCCGAG
61 GG-TGCCGATGGTG-CCGAGGCTCCCGCACGA-CC-AAGGGCCTAGTTTGCCGAT-GTGCCCGAG
47702675 GCT
121 GCT
* * * * * * *
47702678 CCTGCA-ATACCAAG-GCTTAGTTTG-CGATGGTGTCCG-GGCTCCTGCACATCCTAGCACCAGG
1 CCCGCACAT-CCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCACCA-G
47702739 GTGCCGAT-GTGCCCGAGGCT-CCGCACGA-CAAGGGCCTA
62 GTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGGCCTA
47702777 TGCTACCGAA
Statistics
Matches: 561, Mismatches: 113, Indels: 105
0.72 0.15 0.13
Matches are distributed among these distances:
115 1 0.00
116 8 0.01
117 11 0.02
118 32 0.06
119 52 0.09
120 38 0.07
121 25 0.04
122 40 0.07
123 10 0.02
124 27 0.05
125 29 0.05
126 9 0.02
127 13 0.02
128 116 0.21
129 51 0.09
130 34 0.06
131 15 0.03
132 49 0.09
133 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.15
Consensus pattern (123 bp):
CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCACCAGGTGC
CGATGGTGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGTGCCCGAGGCT
Found at i:47702423 original size:39 final size:40
Alignment explanation
Indices: 47702084--47702434 Score: 133
Period size: 39 Copynumber: 8.8 Consensus size: 40
47702074 AGGTGCCGAT
* *
47702084 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAG-GTGCCGA
1 GGTGCCCGA-GCTCCCGCACGACCAAGGGCC-AGTTTGCAGA
* * * *
47702125 TGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTGCCGA
1 -GGTGCCCGA-GCTCCCGCACGACCAAGGGCC-AGTTTGCAGA
* *
47702168 TGGTGCCCGAGCCTCTCGCACGACCAAGGGTCTAG-TTGC--A
1 -GGTGCCCGAG-CTCCCGCACGACCAAGGG-CCAGTTTGCAGA
* * ** *
47702208 TGTGCCCGAG-TTCCGCA--ACCAAGCACCAAGTGT-C-GA
1 GGTGCCCGAGCTCCCGCACGACCAAGGGCC-AGTTTGCAGA
* * *
47702244 TGGT-CACGAGGCTCCCGCCACGACCAAAGGCCTAGTTTGCCGA
1 -GGTGCCCGA-GCTCCCG-CACGACCAAGGGCC-AGTTTGCAGA
* * * * ** * ** *
47702287 TGTGTCCGGGCTCCC-CAC-ATCCCCAGCACTAG-GAGCCGA
1 GGTGCCCGAGCTCCCGCACGA--CCAAGGGCCAGTTTGCAGA
* * *
47702326 TGGTGGCCGAGCTCCCGCACGACCAAGGGCCATTTTGCCGA
1 -GGTGCCCGAGCTCCCGCACGACCAAGGGCCAGTTTGCAGA
* *
47702367 TGTGCCCG-GCTCCCGCACGACCAAGGGCTTAGTTTG-AG-
1 GGTGCCCGAGCTCCCGCACGACCAAGGGC-CAGTTTGCAGA
*
47702405 GGTGCCCGAGCTCTCGCACGGA-CAAGGGCC
1 GGTGCCCGAGCTCCCGCAC-GACCAAGGGCC
47702435 TAGGTTGTCG
Statistics
Matches: 231, Mismatches: 54, Indels: 52
0.69 0.16 0.15
Matches are distributed among these distances:
34 1 0.00
35 9 0.04
36 6 0.03
37 8 0.03
38 11 0.05
39 54 0.23
40 37 0.16
41 23 0.10
42 45 0.19
43 36 0.16
44 1 0.00
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (40 bp):
GGTGCCCGAGCTCCCGCACGACCAAGGGCCAGTTTGCAGA
Found at i:47702677 original size:44 final size:43
Alignment explanation
Indices: 47702480--47702767 Score: 209
Period size: 44 Copynumber: 6.7 Consensus size: 43
47702470 CCAACACCAA
* ** *
47702480 GGTGCCGATGGTGCTCGAGGCTCCCGCACGACCCAAGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCGAG
* ** * * *
47702524 GTTGCCGACAGTGTCCGAGGCCTCCCGC-CCATCATAGCACCGA-
1 GGTGCCGATGGTGCCCGAGG-CTCCCGCACGACCA-AGCACCGAG
** *
47702567 GGTGCCGATGGTGCCCGAGGCTCCCGCACGGACCAAGGGCCTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCAC-GACCAAGCACCGAG
47702611 GGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCGAAGCACCGAG
1 GG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AAGCACCGAG
* * ** * **
47702656 GGTGCCGATGGCGCCCGAGGCTCCTGCAATACCAAG-GCTTAG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCGAG
** * * *
47702698 TTTG-CGATGGTGTCCG-GGCTCCTGCAC-ATCCTAGCACC-AG
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGCACCGAG
47702738 GGTGCCGAT-GTGCCCGAGGCT-CCGCACGAC
1 GGTGCCGATGGTGCCCGAGGCTCCCGCACGAC
47702768 AAGGGCCTAT
Statistics
Matches: 190, Mismatches: 40, Indels: 32
0.73 0.15 0.12
Matches are distributed among these distances:
39 1 0.01
40 30 0.16
41 20 0.11
42 12 0.06
43 28 0.15
44 55 0.29
45 44 0.23
ACGTcount: A:0.17, C:0.35, G:0.33, T:0.16
Consensus pattern (43 bp):
GGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGCACCGAG
Found at i:47702817 original size:22 final size:22
Alignment explanation
Indices: 47702792--47702847 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
47702782 CCGAACGGCA
*
47702792 CCGGAGCACCACGGACGGTTCG
1 CCGGAGCACCACGGACGGATCG
47702814 CCGGAGCACGC-CGGACGGATCG
1 CCGGAGCAC-CACGGACGGATCG
47702836 CCGGAGCACCAC
1 CCGGAGCACCAC
47702848 CGGGAACCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 1 0.03
22 29 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.39, G:0.36, T:0.05
Consensus pattern (22 bp):
CCGGAGCACCACGGACGGATCG
Found at i:47703196 original size:43 final size:43
Alignment explanation
Indices: 47703149--47703260 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 43
47703139 GGTGTCCGAT
* *
47703149 GCTCCCGCACATCCATGCACCAAGG-TGCCGATTGGT-GCTCGAG
1 GCTCCCGCACATCCAAGCACCAAGGTTACCGA-TGGTGGCT-GAG
*
47703192 GCTCCCGCACAATCCAAGCATCAAGGTTACCGATGGTGGCTGAG
1 GCTCCCGCAC-ATCCAAGCACCAAGGTTACCGATGGTGGCTGAG
* *
47703236 GCTCCCACACATCCGAGCCACCAAG
1 GCTCCCGCACATCCAAG-CACCAAG
47703261 TGATGGAGGC
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
43 16 0.27
44 35 0.59
45 8 0.14
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (43 bp):
GCTCCCGCACATCCAAGCACCAAGGTTACCGATGGTGGCTGAG
Found at i:47723415 original size:24 final size:23
Alignment explanation
Indices: 47723388--47723433 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
47723378 CCGGTGGTGC
*
47723388 TCCGACGATCCATCCCGGCGATAA
1 TCCGACGAGCCATCCCGG-GATAA
**
47723412 TCCGGTGAGCCATCCCGGGATA
1 TCCGACGAGCCATCCCGGGATA
47723434 TACAAAACGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.22, C:0.35, G:0.26, T:0.17
Consensus pattern (23 bp):
TCCGACGAGCCATCCCGGGATAA
Found at i:47738982 original size:42 final size:42
Alignment explanation
Indices: 47738786--47739232 Score: 536
Period size: 43 Copynumber: 10.5 Consensus size: 42
47738776 TCCATCCCAG
* * *
47738786 GCACCAAGGTACCGATGGTGCTCGAGGCTCCCGCACATCCAA
1 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* *
47738828 GCACCAAGGTTACCGATGGTG-TCCGAGGCTCCCGCACATCCGA
1 GCACCAAGG-TGCCGATGCTGCT-CGAGGCTCCCGCACATCCGA
* *
47738871 GCCCCCAAGGTGCCGATGCTGGTCGAGGCTCCCGCACATCCGA
1 G-CACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* * *
47738914 GCCACCAAGGTGCCGATGGTGGTCGAGGCTCCCGCACATCCAA
1 G-CACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* * * *
47738957 GCACCAAGGTACCGATGCCGCTCGAGGCTCCTGCATATCCGA
1 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* * * * *
47738999 GCCACCAAGGTGCCGGTGCGGCTTGGGGCTCCCGCACATCCTA
1 G-CACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* * * * * *
47739042 GCACCAATGTGTCGATGCTCCACGAAGCTCCCGCACATCCAA
1 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
47739084 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
1 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* * **
47739126 GCCACCAAGGTGCCGATGGTGGTCGAGGCTCCCGCACATCTAA
1 G-CACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
* *
47739169 GCACCAAGGTGCCGATGGTGCTCGAGGCCCCCGCACATCCGA
1 GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
*
47739211 GCCACCAAGGTGCCGGTGCTGC
1 G-CACCAAGGTGCCGATGCTGC
47739233 CATGTGCTCC
Statistics
Matches: 350, Mismatches: 48, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
42 151 0.43
43 191 0.55
44 8 0.02
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.15
Consensus pattern (42 bp):
GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGA
Found at i:47738997 original size:85 final size:85
Alignment explanation
Indices: 47738778--47739232 Score: 567
Period size: 85 Copynumber: 5.3 Consensus size: 85
47738768 TTAGCCCGTC
* * * * *
47738778 CATCCCAGGCACCAAGGTACCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTACCG
1 CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCG
47738843 ATGGTG-TCCGAGGCTCCCGCA
65 ATGGTGCT-CGAGGCTCCCGCA
* * *
47738864 CATCCGAGCCCCCAAGGTGCCGATGCTGGTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCG
1 CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCG
*
47738929 ATGGTGGTCGAGGCTCCCGCA
65 ATGGTGCTCGAGGCTCCCGCA
* * * * * *
47738950 CATCCAAG-CACCAAGGTACCGATGCCGCTCGAGGCTCCTGCATATCCGAGCCACCAAGGTGCCG
1 CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCG
* * *
47739014 GTGCG-GCTTGGGGCTCCCGCA
65 ATG-GTGCTCGAGGCTCCCGCA
* * * * * *
47739035 CATCCTAG-CACCAATGTGTCGATGCTCCACGAAGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
47739099 TGCTGCTCGAGGCTCCCGCA
66 TGGTGCTCGAGGCTCCCGCA
* * *
47739119 CATCCGAGCCACCAAGGTGCCGATGGTGGTCGAGGCTCCCGCACATCTAAGCACCAAGGTGCCGA
1 CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
*
47739184 TGGTGCTCGAGGCCCCCGCA
66 TGGTGCTCGAGGCTCCCGCA
*
47739204 CATCCGAGCCACCAAGGTGCCGGTGCTGC
1 CATCCGAGCCACCAAGGTGCCGATGCTGC
47739233 CATGTGCTCC
Statistics
Matches: 316, Mismatches: 48, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
84 36 0.11
85 196 0.62
86 75 0.24
87 9 0.03
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (85 bp):
CATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
TGGTGCTCGAGGCTCCCGCA
Found at i:47739156 original size:212 final size:213
Alignment explanation
Indices: 47738811--47739229 Score: 655
Period size: 212 Copynumber: 2.0 Consensus size: 213
47738801 TGGTGCTCGA
* * * * *
47738811 GGCTCCCGCACATCCAAGCACCAAGGTTACCGATGGTGTCCGAGGCTCCCGCACATCCGAGCCCC
1 GGCTCCCGCACATCCAAGCACCAAGGTTA-CGATGCTGCCCGAAGCTCCCGCACATCCAAGCCAC
*
47738876 CAAGGTGCCGATGCTGGTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGTCGAG
65 CAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGTCGAG
* * *
47738941 GCTCCCGCACATCCAAGCACCAAGGTACCGATGCCGCTCGAGGCTCCTGCATATCCGAGCCACCA
130 GCTCCCGCACATCCAAGCACCAAGGTACCGATGCCGCTCGAGGCCCCCGCACATCCGAGCCACCA
47739006 AGGTGCCGGTGCGGCTTGG
195 AGGTGCCGGTGCGGCTTGG
* *
47739025 GGCTCCCGCACATCCTAGCACCAATGTGT-CGATGCT-CCACGAAGCTCCCGCACATCCAAG-CA
1 GGCTCCCGCACATCCAAGCACCAAGGT-TACGATGCTGCC-CGAAGCTCCCGCACATCCAAGCCA
47739087 CCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGTCGA
64 CCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGTCGA
* * **
47739152 GGCTCCCGCACATCTAAGCACCAAGGTGCCGATGGTGCTCGAGGCCCCCGCACATCCGAGCCACC
129 GGCTCCCGCACATCCAAGCACCAAGGTACCGATGCCGCTCGAGGCCCCCGCACATCCGAGCCACC
47739217 AAGGTGCCGGTGC
194 AAGGTGCCGGTGC
47739230 TGCCATGTGC
Statistics
Matches: 188, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
212 137 0.73
213 25 0.13
214 25 0.13
215 1 0.01
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (213 bp):
GGCTCCCGCACATCCAAGCACCAAGGTTACGATGCTGCCCGAAGCTCCCGCACATCCAAGCCACC
AAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGGTCGAGG
CTCCCGCACATCCAAGCACCAAGGTACCGATGCCGCTCGAGGCCCCCGCACATCCGAGCCACCAA
GGTGCCGGTGCGGCTTGG
Found at i:47739386 original size:24 final size:24
Alignment explanation
Indices: 47739327--47739404 Score: 86
Period size: 24 Copynumber: 3.3 Consensus size: 24
47739317 TTTTTTATAT
* **
47739327 GCCGGGATGGATCACCAGAGTGCC
1 GCCGGGATGGATCACCGGAGCACC
* **
47739351 ACC-GGATGGATCATTGGAGCACC
1 GCCGGGATGGATCACCGGAGCACC
*
47739374 GCCGGGATGGATCACCGGAGCACT
1 GCCGGGATGGATCACCGGAGCACC
47739398 GCCGGGA
1 GCCGGGA
47739405 ACCTAACCGG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
23 17 0.40
24 26 0.60
ACGTcount: A:0.22, C:0.28, G:0.37, T:0.13
Consensus pattern (24 bp):
GCCGGGATGGATCACCGGAGCACC
Found at i:47745818 original size:42 final size:42
Alignment explanation
Indices: 47745680--47745848 Score: 187
Period size: 42 Copynumber: 4.0 Consensus size: 42
47745670 ACTTTAGCTT
** * ** *
47745680 TGGTGCTCGAGGCTTTCGCACATCCTAGCACCAAGGTATCGG
1 TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGA
* *
47745722 TGGTGCTCGAGCCTCTCGCACATCCGAGCACCAAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAAGG-TGCCGA
* * *
47745765 TGGTGGC-CGAGGCTCCCGTACATCTGAGCACAAAGGTGCCGA
1 TGGT-GCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGA
* *
47745807 TGGTGTTCGAGGCTCCCGCATATCCGAGCCACCAAGGTGCCG
1 TGGTGCTCGAGGCTCCCGCACATCCGAG-CACCAAGGTGCCG
47745849 GAGACTCTTG
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 61 0.57
43 43 0.40
44 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGA
Found at i:47746425 original size:42 final size:42
Alignment explanation
Indices: 47746319--47746480 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
47746309 CAAAGTTGCC
* *
47746319 GATGGTGCTCGAGGCTCCCGCACATCCGAGGCACC-AAGGTACG
1 GATGGTGCTCGAGGCTCCGGCACATCCGA-CCACCTAA-GTACG
* * * * *
47746362 GATGGTACTCGAGCCTACGGCACATCCGACCTCCTAAGTGCG
1 GATGGTGCTCGAGGCTCCGGCACATCCGACCACCTAAGTACG
* *
47746404 GATGGTGCTCGAGGCTCCGGCACATCCGACCGCCTAGGTACG
1 GATGGTGCTCGAGGCTCCGGCACATCCGACCACCTAAGTACG
* *
47746446 GATGGTGCTCGAGGCTCCTGCACATTCGAGCCACC
1 GATGGTGCTCGAGGCTCCGGCACATCCGA-CCACC
47746481 AGGGTGCCGG
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 70 0.69
43 31 0.31
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.17
Consensus pattern (42 bp):
GATGGTGCTCGAGGCTCCGGCACATCCGACCACCTAAGTACG
Found at i:47746498 original size:85 final size:85
Alignment explanation
Indices: 47746315--47746498 Score: 203
Period size: 85 Copynumber: 2.2 Consensus size: 85
47746305 GGGCCAAAGT
* *
47746315 TGCCGATGGTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTACGGATGGTACTCGAGCCTAC
1 TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACGGATGGTACTCGAGCCTAC
*
47746380 GGCACATCCGACCTCCTAAG
66 GGCACATCCGACCACCTAAG
* * * * * *
47746400 TG-CGGATGGTGCTCGAGGCTCCGGCACATCCGA-CCGCCTAGGTACGGATGGTGCTCGAGGCTC
1 TGCCGG-TGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACGGATGGTACTCGAGCCTA
* * *
47746463 CTGCACATTCGAGCCACC-AGGG
65 CGGCACATCCGA-CCACCTA-AG
*
47746485 TGCCGGTGCTGCTC
1 TGCCGGTGGTGCTC
47746499 TGGGTACCAA
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
84 37 0.45
85 42 0.51
86 3 0.04
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (85 bp):
TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACGGATGGTACTCGAGCCTAC
GGCACATCCGACCACCTAAG
Found at i:47748180 original size:40 final size:40
Alignment explanation
Indices: 47748082--47748384 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
47748072 TCCTCGTTCA
* * * * *
47748082 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
47748121 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
47748161 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
47748201 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
47748241 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
47748281 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
47748321 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
47748361 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47748385 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:47769350 original size:42 final size:42
Alignment explanation
Indices: 47769259--47769959 Score: 843
Period size: 42 Copynumber: 16.8 Consensus size: 42
47769249 GGAGCACATG
** * * *
47769259 GCAGCATCGGCACCTTGGTGGCTCAGATGTGTGGGGGCCTTGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * * *
47769302 GCACCATCGGCACATTGGTGCTTGAATGTGGGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
47769344 CCACCATCGGCACCTTGGTGCTT-GATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* *
47769385 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * *
47769428 GCGGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTAGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
47769470 CCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
47769513 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GA
* *
47769555 CCACCATCGGCACCTTGGTGC-TGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
*
47769596 GCAGCATCGACACCTTGGTG---GGATGTG-GGG-GCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* *
47769633 -CAGCATC-GCACCTTGGTGCCTCGATGTGCGGGAGCCT-GA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * * * *
47769672 GCAGCATCTGCACCTTGGTGCTTGCATGCGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
47769714 GCACCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA
* * *
47769757 GCAGCATCGGTACCTTGTTGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
*
47769799 -CAGCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* * *
47769840 CCAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* *
47769881 GACACCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTTGA
1 G-CAGCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
* *
47769925 GCACCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTTGGATGTGCGGG
47769960 CTAAAGAAAA
Statistics
Matches: 574, Mismatches: 65, Indels: 38
0.85 0.10 0.06
Matches are distributed among these distances:
35 10 0.02
36 7 0.01
37 7 0.01
38 9 0.02
39 12 0.02
40 11 0.02
41 130 0.23
42 213 0.37
43 174 0.30
44 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
Found at i:47769494 original size:85 final size:83
Alignment explanation
Indices: 47769259--47769959 Score: 868
Period size: 85 Copynumber: 8.4 Consensus size: 83
47769249 GGAGCACATG
** * * * *
47769259 GCAGCATCGGCACCTTGGTGGCTCAGATGTGTGGGGGCCTTGAGCACCATCGGCACATTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA-CACCATCGGCACCTTGGTGCT
* * *
47769324 TGAATGTGGGGGAGCCTCGA
64 CGGATGTGCGGGAGCCTCGA
* * *
47769344 CCACCATCGGCACCTTGGTGCTT-GATGTGCGGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-CAC-CATCGGCACCTTGGT-GC
47769407 TCGGATGTGCGGGAGCCTCGA
63 TCGGATGTGCGGGAGCCTCGA
* * *
47769428 GCGGCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTAGACCACCATCGGCACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-CACCATCGGCACCTTGGT-GCT
47769493 CGGATGTGCGGGAGCCTCGA
64 CGGATGTGCGGGAGCCTCGA
47769513 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GA-CACCATCGGCACCTTGGTGCT
47769577 -GGATGTGCGGGAGCCTCGA
64 CGGATGTGCGGGAGCCTCGA
* *
47769596 GCAGCATCGACACCTTGGTG---GGATGTG-GGG-GCCTCGACAGCATC-GCACCTTGGTGCCTC
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACACCATCGGCACCTTGGTG-CTC
47769655 -GATGTGCGGGAGCCT-GA
65 GGATGTGCGGGAGCCTCGA
* * * * * *
47769672 GCAGCATCTGCACCTTGGTGCTTGCATGCGGGGGAGCCTCGTGCACCATCGGCACCTTGTTGGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-ACACCATCGGCACCTTGGT-GCT
47769737 CGGATGTGCGGGAGCCTCGA
64 CGGATGTGCGGGAGCCTCGA
* * * * *
47769757 GCAGCATCGGTACCTTGTTGCTCGGATGTGCGGGAGCCTCGACAGCATCGGCACCTTGGTGCTAG
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACACCATCGGCACCTTGGTGCTCG
47769822 GATGTGCGGGAGCCTCGA
66 GATGTGCGGGAGCCTCGA
* * *
47769840 CCAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GACACCATCGGC-ACCTTGGTGCT
* *
47769905 TGGATGTGCGGGAGCCTTGA
64 CGGATGTGCGGGAGCCTCGA
* *
47769925 GCACCATCGGCACCTTGGTGCCTGGGATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CTTGGATGTGCGGG
47769960 CTAAAGAAAA
Statistics
Matches: 543, Mismatches: 52, Indels: 41
0.85 0.08 0.06
Matches are distributed among these distances:
76 31 0.06
77 23 0.04
78 5 0.01
79 9 0.02
80 10 0.02
81 6 0.01
82 7 0.01
83 138 0.25
84 88 0.16
85 212 0.39
86 14 0.03
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (83 bp):
GCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACACCATCGGCACCTTGGTGCTCG
GATGTGCGGGAGCCTCGA
Found at i:47779431 original size:42 final size:42
Alignment explanation
Indices: 47779392--47779535 Score: 189
Period size: 42 Copynumber: 3.4 Consensus size: 42
47779382 CGAATGTGTG
* *
47779392 GGAGCCTCGAGCACCATCCGTACCTAGGCGGTCGGATGTGCC
1 GGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGGATGTGCC
* *
47779434 GGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGAATGTCCC
1 GGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGGATGTGCC
* * * * * *
47779476 GGAGCCTCAAGCACCATCCGCACCTTGGTGCCTCAGATGTGCG
1 GGAGCCTCGAGCACCATCCGCACCTAGGAG-GTCGGATGTGCC
47779519 GGAGCCTCGAGCACCAT
1 GGAGCCTCGAGCACCAT
47779536 TGGCAACTTT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 65 0.74
43 23 0.26
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (42 bp):
GGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGGATGTGCC
Found at i:47780082 original size:42 final size:42
Alignment explanation
Indices: 47780008--47780172 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
47779998 AGAGTCTCCA
* *
47780008 GCACCTTGGTGGCTGGGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
*
47780051 GCACCTTGGTGCTCGGATGTACGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* * * * *
47780093 GTAACCTTGGTGCTCGGATGTGCGAGAGGCTCGAGAACCACCG
1 G-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * * *
47780136 ACACCTTGGTACTAGGATGTGCGGAAGCCTCGAGCAC
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
47780173 AAAAGCTAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 57 0.56
43 43 0.42
44 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:47780165 original size:85 final size:86
Alignment explanation
Indices: 47780010--47780167 Score: 210
Period size: 85 Copynumber: 1.8 Consensus size: 86
47780000 AGTCTCCAGC
* * * * * * *
47780010 ACCTTGGTGGCTGGGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTACGG
1 ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGAACCACCGACACCTTGGTACTAGGATGTACGG
*
47780075 GAGCCTCGGCCACCATCGGTA
66 AAGCCTCGGCCACCATCGGTA
* * *
47780096 ACCTTGGT-GCTCGGATGTGCGAGAGGCTCGAGAACCACCGACACCTTGGTACTAGGATGTGCGG
1 ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGAACCACCGACACCTTGGTACTAGGATGTACGG
47780160 AAGCCTCG
66 AAGCCTCG
47780168 AGCACAAAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 53 0.87
86 8 0.13
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (86 bp):
ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGAACCACCGACACCTTGGTACTAGGATGTACGG
AAGCCTCGGCCACCATCGGTA
Found at i:47780402 original size:11 final size:12
Alignment explanation
Indices: 47780386--47780438 Score: 56
Period size: 11 Copynumber: 4.5 Consensus size: 12
47780376 GGTTAGGTTC
*
47780386 CCGGCGATGC-T
1 CCGGCGATCCAT
47780397 CCGGCGATCCAT
1 CCGGCGATCCAT
* *
47780409 CCCGGCGGTGC-T
1 -CCGGCGATCCAT
47780421 CCGGCGATCCAT
1 CCGGCGATCCAT
47780433 CCGGCG
1 CCGGCG
47780439 GCGCTCCAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 17 0.50
12 9 0.26
13 8 0.24
ACGTcount: A:0.09, C:0.42, G:0.34, T:0.15
Consensus pattern (12 bp):
CCGGCGATCCAT
Found at i:47780411 original size:24 final size:24
Alignment explanation
Indices: 47780384--47780482 Score: 105
Period size: 23 Copynumber: 4.2 Consensus size: 24
47780374 CCGGTTAGGT
*
47780384 TCCCGGCGATGCTCCGGCGATCCA
1 TCCCGGCGACGCTCCGGCGATCCA
**
47780408 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGACGCTCCGGCGATCCA
* *
47780432 T-CCGGCGGCGCTCCAGCGATCCA
1 TCCCGGCGACGCTCCGGCGATCCA
* *
47780455 T-CCAGC-AGCGCTCCGGTGATCCA
1 TCCCGGCGA-CGCTCCGGCGATCCA
47780478 TCCCG
1 TCCCG
47780483 ATATATAGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
23 39 0.60
24 26 0.40
ACGTcount: A:0.12, C:0.42, G:0.29, T:0.16
Consensus pattern (24 bp):
TCCCGGCGACGCTCCGGCGATCCA
Found at i:47780444 original size:23 final size:23
Alignment explanation
Indices: 47780394--47780480 Score: 120
Period size: 23 Copynumber: 3.7 Consensus size: 23
47780384 TCCCGGCGAT
*
47780394 GCTCCGGCGATCCATCCCGGCGGT
1 GCTCCGGCGATCCAT-CCGGCGGC
47780418 GCTCCGGCGATCCATCCGGCGGC
1 GCTCCGGCGATCCATCCGGCGGC
* * *
47780441 GCTCCAGCGATCCATCCAGCAGC
1 GCTCCGGCGATCCATCCGGCGGC
*
47780464 GCTCCGGTGATCCATCC
1 GCTCCGGCGATCCATCC
47780481 CGATATATAG
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 42 0.74
24 15 0.26
ACGTcount: A:0.13, C:0.43, G:0.29, T:0.16
Consensus pattern (23 bp):
GCTCCGGCGATCCATCCGGCGGC
Found at i:47783596 original size:13 final size:13
Alignment explanation
Indices: 47783580--47783606 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47783570 TTGGAAGCAT
47783580 AACTTGTCTACCA
1 AACTTGTCTACCA
47783593 AACTTGTCTACCA
1 AACTTGTCTACCA
47783606 A
1 A
47783607 GGAGCACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (13 bp):
AACTTGTCTACCA
Found at i:47788958 original size:115 final size:115
Alignment explanation
Indices: 47788756--47788986 Score: 329
Period size: 115 Copynumber: 2.0 Consensus size: 115
47788746 CGAACTTACC
* * ** *
47788756 TCGACGAGTATAAGTAGATACAGAGGCGATTAATCTGAGACTTTCTCTTTGTCTCGATCTCACTC
1 TCGACGAGTATAAGTAGATACAGAGGCAATTAATCTGAGACTTTCACTTTACCTCGATCTAACTC
* *
47788821 CGTATGAGGTCTAATTGGATCTACATGGACAAATTTAACGCAATACAACA
66 CGTACGAGGTCTAACTGGATCTACATGGACAAATTTAACGCAATACAACA
* *
47788871 TCGACGAGTATACGTAGATAC-GAAGGCAATTAATTTGAGACTTTCACTTTACCTCGATCTAACT
1 TCGACGAGTATAAGTAGATACAG-AGGCAATTAATCTGAGACTTTCACTTTACCTCGATCTAACT
* * * *
47788935 CCGTACGAGGTCTAACTGGATCTATATGGATAAATTTAACTCAATTCAACA
65 CCGTACGAGGTCTAACTGGATCTACATGGACAAATTTAACGCAATACAACA
47788986 T
1 T
47788987 ATAATTCATT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
114 1 0.01
115 101 0.99
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (115 bp):
TCGACGAGTATAAGTAGATACAGAGGCAATTAATCTGAGACTTTCACTTTACCTCGATCTAACTC
CGTACGAGGTCTAACTGGATCTACATGGACAAATTTAACGCAATACAACA
Found at i:47799101 original size:25 final size:25
Alignment explanation
Indices: 47799071--47799151 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
47799061 TATCCTCACT
* * * *
47799071 CGAGCTGTAGATCAGTTTTCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
*
47799096 CGAGCTATAAATCGGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
*
47799121 CAAGCTATAAATCAGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
47799146 CGAGCT
1 CGAGCT
47799152 GTGGAGTATG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (25 bp):
CGAGCTATAAATCAGTATGCTCTCA
Found at i:47801992 original size:17 final size:18
Alignment explanation
Indices: 47801966--47802032 Score: 72
Period size: 16 Copynumber: 4.0 Consensus size: 18
47801956 TATTTTAAAC
47801966 TGTTTCATTTA-TTATTT
1 TGTTTCATTTATTTATTT
*
47801983 TGTTTGATTTATTTA-TT
1 TGTTTCATTTATTTATTT
*
47802000 TATTT-ATTTATTTA-TT
1 TGTTTCATTTATTTATTT
*
47802016 TATTT-ATTTATTTATTT
1 TGTTTCATTTATTTATTT
47802033 ATTTATTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
16 25 0.54
17 18 0.39
18 3 0.07
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.73
Consensus pattern (18 bp):
TGTTTCATTTATTTATTT
Found at i:47801996 original size:4 final size:4
Alignment explanation
Indices: 47801989--47802040 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
47801979 ATTTTGTTTG
47801989 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
47802037 ATTT
1 ATTT
47802041 TCAATTTTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:47802300 original size:3 final size:3
Alignment explanation
Indices: 47802274--47802330 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
47802264 AACTCTAAAA
* * * *
47802274 ATT ATTT ATT ATT TTT ATT GTT ATT ATT ATT AGT ATT ATT ATC ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
47802320 -TT CATT ATT AT
1 ATT -ATT ATT AT
47802331 CATTGTTCTA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
2 2 0.05
3 36 0.84
4 5 0.12
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:47802326 original size:15 final size:17
Alignment explanation
Indices: 47802307--47802344 Score: 62
Period size: 15 Copynumber: 2.4 Consensus size: 17
47802297 TTATTATTAG
47802307 TATTATTATCATT-TTC
1 TATTATTATCATTGTTC
47802323 -ATTATTATCATTGTTC
1 TATTATTATCATTGTTC
47802339 TATTAT
1 TATTAT
47802345 GCATATTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 12 0.60
16 3 0.15
17 5 0.25
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.61
Consensus pattern (17 bp):
TATTATTATCATTGTTC
Found at i:47802646 original size:27 final size:26
Alignment explanation
Indices: 47802622--47802926 Score: 288
Period size: 27 Copynumber: 11.3 Consensus size: 26
47802612 CGACTCAATA
*
47802622 GGTAAAATTATCGAAATACCCTCAATG
1 GGTAAAATTACCGAAATACCCTCAA-G
47802649 GGTAAAATTACCGAAATACCCTCAAAG
1 GGTAAAATTACCGAAATACCCTC-AAG
* *
47802676 GGTAAAATTACCGAAATACCTTCTATG
1 GGTAAAATTACCGAAATACCCTC-AAG
* * *
47802703 GGTAAAATTACCGAGATACTCTTGAAG
1 GGTAAAATTACCGAAATAC-CCTCAAG
* * *
47802730 GGTAAAATTATCAAAATACCCTTAATG
1 GGTAAAATTACCGAAATACCCTCAA-G
* * *
47802757 GATAAAATTACCGATATACCCTTGAAG
1 GGTAAAATTACCGAAATACCC-TCAAG
*** *
47802784 GGTAAAATTATTAAAATACCCCTGAAG
1 GGTAAAATTACCGAAATA-CCCTCAAG
** *
47802811 GGTAAAATTATTGAAATACCCTTGAAG
1 GGTAAAATTACCGAAATACCC-TCAAG
*
47802838 GGTAAAATTACCAAAATACCCTCGAAG
1 GGTAAAATTACCGAAATACCCTC-AAG
* *
47802865 GGTAAAATTACCGAAATACCCCCGAAA
1 GGTAAAATTACCGAAATACCCTC-AAG
*
47802892 GGTAAAATTATCGAAATA-CCTCCGAAG
1 GGTAAAATTACCGAAATACCCT-C-AAG
47802919 GGTAAAAT
1 GGTAAAAT
47802927 GAATGTTATA
Statistics
Matches: 237, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
26 10 0.04
27 216 0.91
28 11 0.05
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (26 bp):
GGTAAAATTACCGAAATACCCTCAAG
Found at i:47802681 original size:54 final size:54
Alignment explanation
Indices: 47802622--47802911 Score: 359
Period size: 54 Copynumber: 5.4 Consensus size: 54
47802612 CGACTCAATA
* **
47802622 GGTAAAATTATCGAAATACCCTCAATGGGTAAAATTACCGAAATACCCTCAAAG
1 GGTAAAATTATCAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTTGAAG
* * * * * *
47802676 GGTAAAATTACCGAAATACCTTCTATGGGTAAAATTACCGAGATACTCTTGAAG
1 GGTAAAATTATCAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTTGAAG
* * *
47802730 GGTAAAATTATCAAAATACCCTTAATGGATAAAATTACCGATATACCCTTGAAG
1 GGTAAAATTATCAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTTGAAG
* * **
47802784 GGTAAAATTATTAAAATACCCCTGAA-GGGTAAAATTATTGAAATACCCTTGAAG
1 GGTAAAATTATCAAAATA-CCCTCAATGGGTAAAATTACCGAAATACCCTTGAAG
* ** *
47802838 GGTAAAATTACCAAAATACCCTCGAA-GGGTAAAATTACCGAAATACCCCCGAAA
1 GGTAAAATTATCAAAATACCCTC-AATGGGTAAAATTACCGAAATACCCTTGAAG
*
47802892 GGTAAAATTATCGAAATACC
1 GGTAAAATTATCAAAATACC
47802912 TCCGAAGGGT
Statistics
Matches: 203, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.02
54 193 0.95
55 6 0.03
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (54 bp):
GGTAAAATTATCAAAATACCCTCAATGGGTAAAATTACCGAAATACCCTTGAAG
Found at i:47802763 original size:81 final size:80
Alignment explanation
Indices: 47802622--47802926 Score: 344
Period size: 81 Copynumber: 3.8 Consensus size: 80
47802612 CGACTCAATA
* * * *
47802622 GGTAAAATTATCGAAATA-CCCTCAATGGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTA
1 GGTAAAATTACCGAAATACCCCTGAA-GGGTAAAATTATCGAAATACCCT-TAAGGGTAAAATTA
* *
47802686 CCGAAATACCTTCTATG
64 CCGAAATACCTTCGAAG
* * * * *
47802703 GGTAAAATTACCGAGATACTCTTGAAGGGTAAAATTATCAAAATACCCTTAATGGATAAAATTAC
1 GGTAAAATTACCGAAATACCCCTGAAGGGTAAAATTATCGAAATACCCTTAA-GGGTAAAATTAC
*
47802768 CGATATACCCTT-GAAG
65 CGAAATA-CCTTCGAAG
*** *
47802784 GGTAAAATTATTAAAATACCCCTGAAGGGTAAAATTATTGAAATACCCTTGAAGGGTAAAATTAC
1 GGTAAAATTACCGAAATACCCCTGAAGGGTAAAATTATCGAAATACCCTT-AAGGGTAAAATTAC
* *
47802849 CAAAATACCCTCGAAG
65 CGAAATACCTTCGAAG
* * **
47802865 GGTAAAATTACCGAAATACCCCCGAAAGGTAAAATTATCGAAATACCTCCGAAGGGTAAAAT
1 GGTAAAATTACCGAAATACCCCTGAAGGGTAAAATTATCGAAATACC-CTTAAGGGTAAAAT
47802927 GAATGTTATA
Statistics
Matches: 186, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
80 5 0.03
81 170 0.91
82 11 0.06
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (80 bp):
GGTAAAATTACCGAAATACCCCTGAAGGGTAAAATTATCGAAATACCCTTAAGGGTAAAATTACC
GAAATACCTTCGAAG
Found at i:47803172 original size:26 final size:26
Alignment explanation
Indices: 47803109--47803172 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
47803099 ACATATACTG
* *
47803109 TTACTAGCAGCCTTGTTGCGTTACTA
1 TTACTAGCAGCTTTGTTGCGTCACTA
* *
47803135 TTACTAGTAGCTTTGTTGCGTCATTA
1 TTACTAGCAGCTTTGTTGCGTCACTA
*
47803161 TTACTGGCAGCT
1 TTACTAGCAGCT
47803173 CTACTGCGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (26 bp):
TTACTAGCAGCTTTGTTGCGTCACTA
Found at i:47806287 original size:24 final size:22
Alignment explanation
Indices: 47806260--47806317 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
47806250 TTTTTATATT
47806260 ATAAAACATTAATTAAATTATAAA
1 ATAAAACATTAATTAAA-T-TAAA
*
47806284 ATAAAA-GTTCAATTAAATTAAA
1 ATAAAACATT-AATTAAATTAAA
*
47806306 ACAAAACATTAA
1 ATAAAACATTAA
47806318 ACATAATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
22 11 0.38
23 5 0.17
24 13 0.45
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
ATAAAACATTAATTAAATTAAA
Found at i:47809787 original size:21 final size:21
Alignment explanation
Indices: 47809740--47809787 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
47809730 ACACGGTTTG
* *
47809740 CTCAGACAGTCATGTCACCCA
1 CTCACACAGCCATGTCACCCA
*
47809761 -TCCACACAGCCATGTGACCCA
1 CT-CACACAGCCATGTCACCCA
47809782 CTCACA
1 CTCACA
47809788 TGACCATGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
20 1 0.05
21 20 0.91
22 1 0.05
ACGTcount: A:0.29, C:0.42, G:0.12, T:0.17
Consensus pattern (21 bp):
CTCACACAGCCATGTCACCCA
Found at i:47825674 original size:29 final size:27
Alignment explanation
Indices: 47825637--47825690 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
47825627 TTATTCGATA
*
47825637 TTCAATCACTTATACCATAAAGTATATCT
1 TTCAATCAC--ATACCATAAAATATATCT
* *
47825666 TTCATTCACATATCATAAAATATAT
1 TTCAATCACATACCATAAAATATAT
47825691 TAGAACATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 14 0.64
29 8 0.36
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.39
Consensus pattern (27 bp):
TTCAATCACATACCATAAAATATATCT
Found at i:47828961 original size:36 final size:36
Alignment explanation
Indices: 47828921--47828992 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
47828911 CAAAGACTCA
47828921 ACTCAATTATACCACCACAAAGAAAGAATTATTGGT
1 ACTCAATTATACCACCACAAAGAAAGAATTATTGGT
*
47828957 ACTCAATTATACTACCACAAAGAAAGAATTATTGGT
1 ACTCAATTATACCACCACAAAGAAAGAATTATTGGT
47828993 TGTAGTCTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.26
Consensus pattern (36 bp):
ACTCAATTATACCACCACAAAGAAAGAATTATTGGT
Found at i:47832374 original size:21 final size:21
Alignment explanation
Indices: 47832343--47832395 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
47832333 ACTATTGTTG
*
47832343 AGAAGCAAGTTACTGCTGTAGA
1 AGAAG-AAGTTACTGCTGAAGA
* **
47832365 AGAGGAAGTTGTTGCTGAAGA
1 AGAAGAAGTTACTGCTGAAGA
47832386 AGAAGAAGTT
1 AGAAGAAGTT
47832396 GTTGAAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.38, C:0.08, G:0.32, T:0.23
Consensus pattern (21 bp):
AGAAGAAGTTACTGCTGAAGA
Found at i:47832396 original size:21 final size:21
Alignment explanation
Indices: 47832356--47832399 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
47832346 AGCAAGTTAC
* *
47832356 TGCTGTAGAAGAGGAAGTTGT
1 TGCTGAAGAAGAAGAAGTTGT
47832377 TGCTGAAGAAGAAGAAGTTGT
1 TGCTGAAGAAGAAGAAGTTGT
47832398 TG
1 TG
47832400 AAAATGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (21 bp):
TGCTGAAGAAGAAGAAGTTGT
Found at i:47838731 original size:29 final size:29
Alignment explanation
Indices: 47838653--47838731 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
47838643 CGAAGCTATT
* *
47838653 CCTTTTCATATTCAATGGTCGTCACAGTC
1 CCTTTTCATAATCGATGGTCGTCACAGTC
* *
47838682 CCTTTTCATAGTTGATGGTCGTCACCA-TC
1 CCTTTTCATAATCGATGGTCGTCA-CAGTC
*
47838711 CCTTTTCATAATCGATAGTCG
1 CCTTTTCATAATCGATGGTCG
47838732 AAGCTATCCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 41 0.95
30 2 0.05
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (29 bp):
CCTTTTCATAATCGATGGTCGTCACAGTC
Found at i:47838740 original size:29 final size:28
Alignment explanation
Indices: 47838579--47838748 Score: 90
Period size: 29 Copynumber: 5.9 Consensus size: 28
47838569 TGTGCTAAAT
* * *
47838579 GATGGTTGTAACCGTCCCTTTTCATATTC
1 GATGGTCG-AACCATCCCTTTTCATAATC
* ** *
47838608 GATGGTTGAAACCATCATTTTTCATTATC
1 GATGGTCG-AACCATCCCTTTTCATAATC
* * * * *
47838637 GATAGCCGAAGCTATTCCTTTTCATATTC
1 GATGGTCGAA-CCATCCCTTTTCATAATC
* * * *
47838666 AATGGTCG-TCACAGTCCCTTTTCATAGTT
1 GATGGTCGAAC-CA-TCCCTTTTCATAATC
*
47838695 GATGGTCGTCACCATCCCTTTTCATAATC
1 GATGGTCG-AACCATCCCTTTTCATAATC
* * *
47838724 GATAGTCGAAGCTATCCCTTGTCAT
1 GATGGTCGAA-CCATCCCTTTTCAT
47838749 TGGTCGATAA
Statistics
Matches: 104, Mismatches: 31, Indels: 12
0.71 0.21 0.08
Matches are distributed among these distances:
27 1 0.01
28 4 0.04
29 96 0.92
30 2 0.02
31 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (28 bp):
GATGGTCGAACCATCCCTTTTCATAATC
Found at i:47841944 original size:371 final size:371
Alignment explanation
Indices: 47841156--47842273 Score: 1837
Period size: 371 Copynumber: 3.0 Consensus size: 371
47841146 TGGGACTTGT
*
47841156 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCACATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* * *
47841221 TACTACATAAATGAACTAGTAGATATTGCATGAACGGGAATTGTATGATACTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
*
47841286 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCAATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
* * *
47841351 CTAGTCATTCACTGAGCTTGTTAAGCTCACC-GGTCCCTTCTTGTAACATCTTAAAAATCA-GGG
196 CTAGTCATTCACTGAGCTTGTTAAACTCACCTGCTCCCTTCTTGTAACATCCTAAAAAT-AGGGG
* *
47841414 GTTAGTATAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTGAATTTTTGAGATTATCTAT
260 GTTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
* *
47841479 GCATTTTTAGGAAATAAATAAGGTATTGGTTTGTTGGTTAAGTGTTA
325 GAATTTTTAGGAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
* * * *
47841526 CTGAAATGTTATATATGCTTAATTGAATATGTGTTTCATGATATATGTTTGCATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
47841591 TGCTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACCTAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
* * *
47841656 TTATAATCGTACTTAAAAATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
47841721 CTAGTCATTCACTGAGCTTGTTAAACTCACCTGCTCCCTTCTTGTAACATCCTAAAAATAGGGGG
196 CTAGTCATTCACTGAGCTTGTTAAACTCACCTGCTCCCTTCTTGTAACATCCTAAAAATAGGGGG
*
47841786 TTAGTAGAATCGAGTTTGTGAATCAAGAAAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
261 TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
* * *
47841851 AATTTTTAGGAAATAAATGAGATATTTGTTTGTTGGTTAAGTGTTG
326 AATTTTTAGGAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
* * *
47841897 GTGAAATGAGATATATGCTTAATTAAATATGTGTTGCATGATATATGTTCGCATAAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
47841962 TTCTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATGCTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
*
47842027 TTGTAATCGTACTTATATATGGTTGTCTTATGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
* *
47842092 CTAGTCATTCACTGAGCTTGTTAAACTCA-CTCGCTCCCTTCTTGTAACATCCTAAAAATTGGAG
196 CTAGTCATTCACTGAGCTTGTTAAACTCACCT-GCTCCCTTCTTGTAACATCCTAAAAATAGGGG
* * * * *
47842156 CTTAGTAGAATCGGGGTTGTGAATTAAGAGAGAGTGGTCATGCCTTAATTTTTTAGATTATCTAT
260 GTTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
* *
47842221 GTATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
325 GAATTTTTAGGAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
47842268 GTGAAA
1 GTGAAA
47842274 CACTCCTTAA
Statistics
Matches: 693, Mismatches: 52, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
370 214 0.31
371 479 0.69
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (371 bp):
GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
CTAGTCATTCACTGAGCTTGTTAAACTCACCTGCTCCCTTCTTGTAACATCCTAAAAATAGGGGG
TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
AATTTTTAGGAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
Found at i:47845476 original size:28 final size:28
Alignment explanation
Indices: 47845413--47845620 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
47845403 ATATTAAGTC
* * *
47845413 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
47845440 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
47845468 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
47845495 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
47845523 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
47845551 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
47845579 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
47845606 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47845621 GCACAATTTA
Statistics
Matches: 175, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
27 66 0.38
28 109 0.62
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:47845497 original size:55 final size:55
Alignment explanation
Indices: 47845413--47845645 Score: 358
Period size: 55 Copynumber: 4.2 Consensus size: 55
47845403 ATATTAAGTC
* * *
47845413 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
47845468 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
47845523 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
47845579 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
47845635 CGCACACTTAG
1 CGCACACTTAG
47845646 CGCCAATCTC
Statistics
Matches: 166, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
55 95 0.57
56 71 0.43
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:47845609 original size:111 final size:110
Alignment explanation
Indices: 47845413--47845620 Score: 362
Period size: 111 Copynumber: 1.9 Consensus size: 110
47845403 ATATTAAGTC
*
47845413 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
47845478 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
66 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
* * *
47845523 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
47845588 AGTGCTACATAGTCAATTCGCACACTTAGTGCT
65 AGTGCTACATAGTCAACTCGCACACTTAGTGCT
47845621 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
110 20 0.22
111 72 0.78
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (110 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:47846113 original size:12 final size:12
Alignment explanation
Indices: 47846096--47846121 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
47846086 ATGGCATACT
47846096 TATGTATATATA
1 TATGTATATATA
47846108 TATGTATATATA
1 TATGTATATATA
47846120 TA
1 TA
47846122 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:47853802 original size:28 final size:28
Alignment explanation
Indices: 47853739--47853971 Score: 337
Period size: 28 Copynumber: 8.4 Consensus size: 28
47853729 ATATTAAGTC
* *
47853739 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
47853766 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47853794 CGCACACTTAGTGCTACATAGTC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47853821 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
47853849 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
47853877 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
47853905 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
47853932 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
47853961 CGCACACTTAG
1 CGCACACTTAG
47853972 CGCCAATCTC
Statistics
Matches: 190, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
27 69 0.36
28 108 0.57
29 13 0.07
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:47853823 original size:55 final size:55
Alignment explanation
Indices: 47853739--47853971 Score: 367
Period size: 55 Copynumber: 4.2 Consensus size: 55
47853729 ATATTAAGTC
* * *
47853739 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
47853794 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
47853849 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
47853905 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
47853961 CGCACACTTAG
1 CGCACACTTAG
47853972 CGCCAATCTC
Statistics
Matches: 166, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
55 96 0.58
56 70 0.42
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:47853935 original size:111 final size:110
Alignment explanation
Indices: 47853739--47853946 Score: 371
Period size: 111 Copynumber: 1.9 Consensus size: 110
47853729 ATATTAAGTC
*
47853739 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
47853804 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
66 GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
* *
47853849 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
47853914 AGTGCTACATAGTCAATTCGCACACTTAGTGCT
65 AGTGCTACATAGTCAACTCGCACACTTAGTGCT
47853947 GCACAATTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
110 20 0.22
111 73 0.78
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (110 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:47854439 original size:12 final size:12
Alignment explanation
Indices: 47854422--47854447 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
47854412 ATGGCATACT
47854422 TATGTATATATA
1 TATGTATATATA
47854434 TATGTATATATA
1 TATGTATATATA
47854446 TA
1 TA
47854448 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:47856560 original size:7 final size:7
Alignment explanation
Indices: 47856524--47856559 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
47856514 ATGATGATTA
47856524 TATATAT
1 TATATAT
47856531 TATATAT
1 TATATAT
47856538 TATATAT
1 TATATAT
47856545 TATATAT
1 TATATAT
*
47856552 TGTATAT
1 TATATAT
47856559 T
1 T
47856560 GAAACAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (7 bp):
TATATAT
Found at i:47858277 original size:37 final size:37
Alignment explanation
Indices: 47858233--47858310 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
47858223 TTAATAAACA
47858233 TGATAAATCAAGTATGTTATTACAACCATCTCATGAT
1 TGATAAATCAAGTATGTTATTACAACCATCTCATGAT
47858270 TGATAAATCAAGTATGTTATTACAACCATCTCATGAT
1 TGATAAATCAAGTATGTTATTACAACCATCTCATGAT
47858307 TGAT
1 TGAT
47858311 CTTTGGGCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (37 bp):
TGATAAATCAAGTATGTTATTACAACCATCTCATGAT
Found at i:47859228 original size:34 final size:34
Alignment explanation
Indices: 47859184--47859307 Score: 103
Period size: 34 Copynumber: 3.6 Consensus size: 34
47859174 ATCTGTCAGT
* *
47859184 TTATCTGACTAGTGCTGGGCACAACTATCGTCGA
1 TTATCAGACTAGTGCTAGGCACAACTATCGTCGA
* *
47859218 TTATCAGACTACTGCTAGGCACAA-TAATTTGTCGA
1 TTATCAGACTAGTGCTAGGCACAACT-A-TCGTCGA
* * *
47859253 CTCGT-TC-GACTAGTGTTTGGCACAACTATCGTCGG
1 -T--TATCAGACTAGTGCTAGGCACAACTATCGTCGA
47859288 TTATCCA-ACTAGTGCTAGGC
1 TTAT-CAGACTAGTGCTAGGC
47859308 GTAATAATTT
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
32 1 0.01
33 2 0.03
34 35 0.50
35 11 0.16
36 17 0.24
37 3 0.04
38 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (34 bp):
TTATCAGACTAGTGCTAGGCACAACTATCGTCGA
Found at i:47859292 original size:70 final size:70
Alignment explanation
Indices: 47859190--47859346 Score: 235
Period size: 70 Copynumber: 2.2 Consensus size: 70
47859180 CAGTTTATCT
47859190 GACTAGTGCTGGGCACAACTATCGTCGATTAT-CAGACTACTGCTAGGCACAATAATTTGTCGAC
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCA-ACTACTGCTAGGCACAATAATTTGTCGAC
47859254 TCGTTC
65 TCGTTC
* * * * **
47859260 GACTAGTGTTTGGCACAACTATCGTCGGTTATCCAACTAGTGCTAGGCGTAATAATTTGTCGACT
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
*
47859325 CGTTT
66 CGTTC
47859330 GACTAGTGCTGGGCACA
1 GACTAGTGCTGGGCACA
47859347 CAAATGATCT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
70 75 0.97
71 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (70 bp):
GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
CGTTC
Found at i:47860373 original size:55 final size:54
Alignment explanation
Indices: 47860289--47860414 Score: 123
Period size: 55 Copynumber: 2.3 Consensus size: 54
47860279 GTGTGGGGTA
* * * *
47860289 ACTCAGAGAGTTACACGGTCTGGCGCACGAGCGTGTGACACGATTGTGTGACCCT
1 ACTCAAAGAGTTACACGGGCTGGCGCACGAGC-TGGGACACGATCGTGTGACCCT
* * *
47860344 ACTCAAAGAGTTACACGGGC-GAG-GACACGAGCTGGGACATGATCGTTTGTCCCT
1 ACTCAAAGAGTTACACGGGCTG-GCG-CACGAGCTGGGACACGATCGTGTGACCCT
*
47860398 AGTTCAAAG-GTTACACG
1 A-CTCAAAGAGTTACACG
47860415 ACTTGAAACA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
54 28 0.47
55 32 0.53
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.21
Consensus pattern (54 bp):
ACTCAAAGAGTTACACGGGCTGGCGCACGAGCTGGGACACGATCGTGTGACCCT
Found at i:47863608 original size:149 final size:149
Alignment explanation
Indices: 47863298--47863611 Score: 458
Period size: 150 Copynumber: 2.1 Consensus size: 149
47863288 TAGCGTTTTT
* * *
47863298 TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTTATTTTTTTTCCTACTATTTC
1 TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTT-CAACTACTTC
47863363 AAAGTAAAAGCTTTAATCTTTAAGAAAAATAGTGTTTTTTTTAAATAAAAAAAAGAGAAAGTTTA
65 AAAGTAAAAGCTTTAATCTTTAAGAAAAATAGTGTTTTTTTTAAATAAAAAAAAGAGAAAGTTTA
47863428 GATTTTGAAAAATAAAAAAA
130 GATTTTGAAAAATAAAAAAA
* *
47863448 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTT-AACTACTTCA
1 TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTACTTCA
* *
47863512 AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTG-TTTTTTTATAAT-AAAAAAGGAGAAAGTT
66 AAGTAAAAGCTTTAATCTTTAAG--AAAAATAGTGTTTTTTTTA-AATAAAAAAAAGAGAAAGTT
*
47863575 TCGATTTTGAAAAA-AATAAAAA
128 TAGATTTTGAAAAATAA-AAAAA
*
47863597 -TATGTTTTTTTAAAG
1 TTA-GTTATTTTAAAG
47863612 TCATTTTAAA
Statistics
Matches: 150, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
148 34 0.23
149 52 0.35
150 64 0.43
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.41
Consensus pattern (149 bp):
TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTACTTCA
AAGTAAAAGCTTTAATCTTTAAGAAAAATAGTGTTTTTTTTAAATAAAAAAAAGAGAAAGTTTAG
ATTTTGAAAAATAAAAAAA
Found at i:47863851 original size:6 final size:6
Alignment explanation
Indices: 47863840--47863865 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
47863830 CATAAAAGTT
47863840 GGAAGA GGAAGA GGAAGA GGAAGA GG
1 GGAAGA GGAAGA GGAAGA GGAAGA GG
47863866 TTTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (6 bp):
GGAAGA
Done.