Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 155 of 208
Found at i:50394371 original size:20 final size:20
Alignment explanation
Indices: 50394342--50394520 Score: 155
Period size: 20 Copynumber: 9.0 Consensus size: 20
50394332 TATGTGAATA
*
50394342 TACTTCGGTACTCTTGTTTG
1 TACTTCGGTACTCCTGTTTG
*
50394362 TACTTTGGTAC-CCATGTTTG
1 TACTTCGGTACTCC-TGTTTG
** * *
50394382 TACTTCAATACTCTTGTATG
1 TACTTCGGTACTCCTGTTTG
* * * *
50394402 TATTTAGATACTCCTGTATG
1 TACTTCGGTACTCCTGTTTG
*
50394422 TACTTCGGTATTCCTGTTTG
1 TACTTCGGTACTCCTGTTTG
* *
50394442 TACTTCGGTACCCCTATTTG
1 TACTTCGGTACTCCTGTTTG
** * *
50394462 TACTTCAATACTCTTGTATG
1 TACTTCGGTACTCCTGTTTG
*
50394482 TACTTC-GTACCCCTGTTTG
1 TACTTCGGTACTCCTGTTTG
* *
50394501 TACTTCGGTATTCCTATTTG
1 TACTTCGGTACTCCTGTTTG
50394521 CACATTCGTG
Statistics
Matches: 124, Mismatches: 32, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
19 16 0.13
20 107 0.86
21 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.46
Consensus pattern (20 bp):
TACTTCGGTACTCCTGTTTG
Found at i:50394397 original size:40 final size:40
Alignment explanation
Indices: 50394350--50394506 Score: 174
Period size: 40 Copynumber: 4.0 Consensus size: 40
50394340 TATACTTCGG
* *
50394350 TACTCTTGTTTGTACTTTGGTACCCATGTTTGTACTTCAA
1 TACTCTTGTATGTACTTTGGTACCCCTGTTTGTACTTCAA
* * * **
50394390 TACTCTTGTATGTA-TTTAGATACTCCTGTATGTACTTCGG
1 TACTCTTGTATGTACTTT-GGTACCCCTGTTTGTACTTCAA
* * * * *
50394430 TATTCCTGTTTGTACTTCGGTACCCCTATTTGTACTTCAA
1 TACTCTTGTATGTACTTTGGTACCCCTGTTTGTACTTCAA
*
50394470 TACTCTTGTATGTAC-TTCGTACCCCTGTTTGTACTTC
1 TACTCTTGTATGTACTTTGGTACCCCTGTTTGTACTTC
50394507 GGTATTCCTA
Statistics
Matches: 92, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
39 22 0.24
40 68 0.74
41 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (40 bp):
TACTCTTGTATGTACTTTGGTACCCCTGTTTGTACTTCAA
Found at i:50394475 original size:80 final size:79
Alignment explanation
Indices: 50394342--50394520 Score: 259
Period size: 80 Copynumber: 2.3 Consensus size: 79
50394332 TATGTGAATA
* * * * *
50394342 TACTTCGGTACTCTTGTTTGTACTTTGGTACCCATGTTTGTACTTCAATACTCTTGTATGTATTT
1 TACTTCGGTATTCCTGTTTGTACTTCGGTACCCATATTTGTACTTCAATACTCTTGTATGTACTT
*
50394407 AGATACTCCTGTATG
66 AG-TACCCCTGTATG
*
50394422 TACTTCGGTATTCCTGTTTGTACTTCGGTACCCCTATTTGTACTTCAATACTCTTGTATGTACTT
1 TACTTCGGTATTCCTGTTTGTACTTCGGTACCCATATTTGTACTTCAATACTCTTGTATGTACTT
* *
50394487 CGTACCCCTGTTTG
66 AGTACCCCTGTATG
*
50394501 TACTTCGGTATTCCTATTTG
1 TACTTCGGTATTCCTGTTTG
50394521 CACATTCGTG
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 29 0.33
80 60 0.67
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.46
Consensus pattern (79 bp):
TACTTCGGTATTCCTGTTTGTACTTCGGTACCCATATTTGTACTTCAATACTCTTGTATGTACTT
AGTACCCCTGTATG
Found at i:50396955 original size:16 final size:17
Alignment explanation
Indices: 50396926--50396957 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
50396916 ACTAGGACAA
50396926 AAAGAAATAGAAAAATG
1 AAAGAAATAGAAAAATG
50396943 AAAGAAA-AGAAAAAT
1 AAAGAAATAGAAAAAT
50396958 AATGACATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (17 bp):
AAAGAAATAGAAAAATG
Found at i:50397317 original size:69 final size:68
Alignment explanation
Indices: 50397171--50397318 Score: 183
Period size: 68 Copynumber: 2.2 Consensus size: 68
50397161 TAAAAAAAAG
* * *
50397171 GGAAGAGCATGCTCCTTATTTCTTTAAACAAGGGAGAATGACCTCCATTGTGTTTCTTAAAAATA
1 GGAAGAACATGCTCCTTATTTCTCTAAACAAGGGAGAACGACCTCCATTGTGTTTCTTAAAAATA
*
50397236 GTG
66 GTA
* **
50397239 GGAAGAACATGCTCTTTATTTCTCTAAA-AAGGTGAGAACGACCAAT-TTTTGTGTTTCTTAAAA
1 GGAAGAACATGCTCCTTATTTCTCTAAACAAGG-GAGAACGACC--TCCATTGTGTTTCTTAAAA
*
50397302 TTAGTA
63 ATAGTA
50397308 GGAAGAACATG
1 GGAAGAACATG
50397319 TTTTTATATA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
67 4 0.06
68 34 0.49
69 30 0.43
70 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.32
Consensus pattern (68 bp):
GGAAGAACATGCTCCTTATTTCTCTAAACAAGGGAGAACGACCTCCATTGTGTTTCTTAAAAATA
GTA
Found at i:50398303 original size:16 final size:16
Alignment explanation
Indices: 50398262--50398308 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50398252 GGTTGCTCTA
50398262 AACAAGAGTTATT-TC
1 AACAAGAGTTATTCTC
**
50398277 ATACATTAGTTATTCTC
1 A-ACAAGAGTTATTCTC
*
50398294 AACAAGAGTTGTTCT
1 AACAAGAGTTATTCT
50398309 TAAATTATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 1 0.04
16 21 0.84
17 3 0.12
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (16 bp):
AACAAGAGTTATTCTC
Found at i:50402210 original size:45 final size:45
Alignment explanation
Indices: 50402146--50402233 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
50402136 GATAATGTTG
* *
50402146 TGAGAGATAAATGTTAGAAACTAAGTAAAAGAGACATTTATATTA
1 TGAGAGACAAATGTTAGAAACTAAGTAAAAGAGAAATTTATATTA
*
50402191 TGAGAGACAAATGTTAGAAACTAATTAAAAGAGAAATTTATAT
1 TGAGAGACAAATGTTAGAAACTAAGTAAAAGAGAAATTTATAT
50402234 GATCATTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.50, C:0.05, G:0.17, T:0.28
Consensus pattern (45 bp):
TGAGAGACAAATGTTAGAAACTAAGTAAAAGAGAAATTTATATTA
Found at i:50402783 original size:13 final size:13
Alignment explanation
Indices: 50402765--50402789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50402755 TTGACAAGAG
50402765 TTTATAATTAGAT
1 TTTATAATTAGAT
50402778 TTTATAATTAGA
1 TTTATAATTAGA
50402790 AATATTTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
TTTATAATTAGAT
Found at i:50407978 original size:10 final size:11
Alignment explanation
Indices: 50407959--50407987 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
50407949 GCCAAAACAG
50407959 TAAGAAATAAA
1 TAAGAAATAAA
50407970 TAA-AAATAAA
1 TAAGAAATAAA
50407980 TAAGAAAT
1 TAAGAAAT
50407988 GATAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (11 bp):
TAAGAAATAAA
Found at i:50409947 original size:22 final size:23
Alignment explanation
Indices: 50409898--50409948 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
50409888 ATGTAATTTT
*
50409898 AGAATTTTTAGAATTTTTATACA
1 AGAATTTTTAGAATTTTTATAAA
50409921 A-AATTTTCTA-AATTTTTA-AAA
1 AGAATTTT-TAGAATTTTTATAAA
50409942 AGAATTT
1 AGAATTT
50409949 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 19 0.76
23 3 0.12
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (23 bp):
AGAATTTTTAGAATTTTTATAAA
Found at i:50410204 original size:19 final size:19
Alignment explanation
Indices: 50410182--50410218 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50410172 ACCACTGTCA
*
50410182 CCCAACGTAATCAAATTTG
1 CCCAACATAATCAAATTTG
*
50410201 CCCACCATAATCAAATTT
1 CCCAACATAATCAAATTT
50410219 ATTATTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.27
Consensus pattern (19 bp):
CCCAACATAATCAAATTTG
Found at i:50411920 original size:25 final size:23
Alignment explanation
Indices: 50411831--50411932 Score: 75
Period size: 22 Copynumber: 4.4 Consensus size: 23
50411821 ACTAATGAAC
* *
50411831 AGAGAGCACTAAAGTGCTAT-AC
1 AGAGAGCACTAATGTGCTATAAT
*
50411853 AGAGAGCAC-AGATGTGCTA-ATT
1 AGAGAGCACTA-ATGTGCTATAAT
* * **
50411875 GGAGAGCACTAACGTTTTAATAATT
1 AGAGAGCACTAATGTGCT-ATAA-T
50411900 AGAGAGCACTAATGTGCTAATAAT
1 AGAGAGCACTAATGTGCT-ATAAT
*
50411924 AAAGAGCAC
1 AGAGAGCAC
50411933 GCTAAGGTTC
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
21 1 0.02
22 28 0.46
23 2 0.03
24 10 0.16
25 20 0.33
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (23 bp):
AGAGAGCACTAATGTGCTATAAT
Found at i:50413656 original size:19 final size:19
Alignment explanation
Indices: 50413632--50413668 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
50413622 GATGGGAGGG
50413632 AAAT-AAAAGTTTTAGGGGA
1 AAATAAAAAGTTTT-GGGGA
50413651 AAATAAAAAGTTTTGGGG
1 AAATAAAAAGTTTTGGGG
50413669 CTTGAGGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27
Consensus pattern (19 bp):
AAATAAAAAGTTTTGGGGA
Found at i:50417374 original size:44 final size:44
Alignment explanation
Indices: 50417286--50417376 Score: 112
Period size: 44 Copynumber: 2.1 Consensus size: 44
50417276 GTAGCTCAAA
* *
50417286 TAATATTAAAATAACCTATACTAATCAAAGTTTAAGTGAGAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTTAACTGAGAAAC
* * * *
50417330 TAATATTAAAATAAGCTACACTATTTAGAGTTTAACTG-GTAAAC
1 TAATATTAAAATAACCTACACTAATCAAAGTTTAACTGAG-AAAC
50417374 TAA
1 TAA
50417377 AAATAGAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCAAAGTTTAACTGAGAAAC
Found at i:50421468 original size:20 final size:20
Alignment explanation
Indices: 50421443--50421509 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
50421433 TATGTGTAAT
50421443 TCAGGGGTACCGAAGTACAA
1 TCAGGGGTACCGAAGTACAA
* ** * *
50421463 TCAGGGGCACATATGTATAA
1 TCAGGGGTACCGAAGTACAA
*
50421483 TTCAGGGGTACCGGAGTACAA
1 -TCAGGGGTACCGAAGTACAA
*
50421504 CCAGGG
1 TCAGGG
50421510 ACACGTATGT
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
20 20 0.59
21 14 0.41
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.18
Consensus pattern (20 bp):
TCAGGGGTACCGAAGTACAA
Found at i:50421469 original size:41 final size:41
Alignment explanation
Indices: 50421424--50421530 Score: 151
Period size: 41 Copynumber: 2.6 Consensus size: 41
50421414 GAGTGTAAAA
* * *
50421424 AGGGGCCCATATGTGTAATTCAGGGGTACCGAAGTACAATC
1 AGGGGCACATATGTATAATTCAGGGGTACCGAAGTACAACC
*
50421465 AGGGGCACATATGTATAATTCAGGGGTACCGGAGTACAACC
1 AGGGGCACATATGTATAATTCAGGGGTACCGAAGTACAACC
* * *
50421506 AGGGACACGTATGTACAATTCAGGG
1 AGGGGCACATATGTATAATTCAGGG
50421531 AATAATTAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.21
Consensus pattern (41 bp):
AGGGGCACATATGTATAATTCAGGGGTACCGAAGTACAACC
Found at i:50421489 original size:21 final size:21
Alignment explanation
Indices: 50421424--50421490 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
50421414 GAGTGTAAAA
* *
50421424 AGGGGCCCATATGTGTAATTC
1 AGGGGCACATATGTATAATTC
* ** * *
50421445 AGGGGTACCGAAGTACAA-TC
1 AGGGGCACATATGTATAATTC
50421465 AGGGGCACATATGTATAATTC
1 AGGGGCACATATGTATAATTC
50421486 AGGGG
1 AGGGG
50421491 TACCGGAGTA
Statistics
Matches: 33, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 15 0.45
21 18 0.55
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.22
Consensus pattern (21 bp):
AGGGGCACATATGTATAATTC
Found at i:50421531 original size:21 final size:20
Alignment explanation
Indices: 50421457--50421531 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 20
50421447 GGGTACCGAA
* *
50421457 GTACAATCAGGGGCACATAT
1 GTACAATCAGGGACACGTAT
* *
50421477 GTATAATTCAGGGGTAC-CGGA-
1 GTACAA-TCA-GGG-ACACGTAT
*
50421498 GTACAACCAGGGACACGTAT
1 GTACAATCAGGGACACGTAT
50421518 GTACAATTCAGGGA
1 GTACAA-TCAGGGA
50421532 ATAATTAACT
Statistics
Matches: 41, Mismatches: 8, Indels: 11
0.68 0.13 0.18
Matches are distributed among these distances:
18 2 0.05
19 6 0.15
20 13 0.32
21 14 0.34
22 5 0.12
23 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (20 bp):
GTACAATCAGGGACACGTAT
Found at i:50425115 original size:23 final size:22
Alignment explanation
Indices: 50425079--50425121 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
50425069 ATCTAAAATT
50425079 TAAAAAATAGATAAATTTTAAC
1 TAAAAAATAGATAAATTTTAAC
*
50425101 TAAAAATATATATAAATTTTA
1 TAAAAA-ATAGATAAATTTTA
50425122 GAAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TAAAAAATAGATAAATTTTAAC
Found at i:50425371 original size:18 final size:19
Alignment explanation
Indices: 50425348--50425385 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
50425338 TCTTTAAATC
50425348 TTTAATATTTT-ATTTAAA
1 TTTAATATTTTGATTTAAA
*
50425366 TTTAATGTTTTGATTTAAA
1 TTTAATATTTTGATTTAAA
50425385 T
1 T
50425386 AAACCTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTAATATTTTGATTTAAA
Found at i:50427841 original size:13 final size:13
Alignment explanation
Indices: 50427823--50427847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50427813 TTAGAGCCCG
50427823 TAAATTTTTTTAT
1 TAAATTTTTTTAT
50427836 TAAATTTTTTTA
1 TAAATTTTTTTA
50427848 GAGTTACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TAAATTTTTTTAT
Found at i:50428031 original size:14 final size:14
Alignment explanation
Indices: 50428012--50428038 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50428002 CATGATAAAA
50428012 TAAAATACAAGTGG
1 TAAAATACAAGTGG
50428026 TAAAATACAAGTG
1 TAAAATACAAGTG
50428039 TGCAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGG
Found at i:50437708 original size:51 final size:51
Alignment explanation
Indices: 50437653--50437789 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 51
50437643 TATGGTAACT
* *
50437653 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
* * * ** * * **
50437704 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
*
50437755 AATCTTAGAAGATATGATATTATATTCTTAAAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAAAGAT
50437790 TTGATGGGTA
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
Found at i:50440507 original size:51 final size:51
Alignment explanation
Indices: 50440452--50440588 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 51
50440442 TATGGTAACT
* *
50440452 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
* * * ** * * **
50440503 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
*
50440554 AATCTTAGAAGATATGATATTATATTCTTAAAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAAAGAT
50440589 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATGG
Found at i:50443009 original size:61 final size:61
Alignment explanation
Indices: 50442939--50443060 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
50442929 TCAAAAAAAA
50442939 ATTGATACATTAAATTGGAATCAATTTTGTAATGCACGATCAATGCCTGAAGAGGAATTAG
1 ATTGATACATTAAATTGGAATCAATTTTGTAATGCACGATCAATGCCTGAAGAGGAATTAG
*
50443000 ATTGATACATTAAATTTGAATCAATTTTGTAATGCACGATCAATGCCTGAAGAGGAATTAG
1 ATTGATACATTAAATTGGAATCAATTTTGTAATGCACGATCAATGCCTGAAGAGGAATTAG
50443061 TGCTAGAGTT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (61 bp):
ATTGATACATTAAATTGGAATCAATTTTGTAATGCACGATCAATGCCTGAAGAGGAATTAG
Found at i:50451830 original size:18 final size:18
Alignment explanation
Indices: 50451798--50451840 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
50451788 CTTACCAAAT
*
50451798 ATTTCA-GTACTTTGTTC
1 ATTTCATGTACCTTGTTC
50451815 ATTTCATGTACCTTGTTC
1 ATTTCATGTACCTTGTTC
*
50451833 TTTTCATG
1 ATTTCATG
50451841 CACACTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (18 bp):
ATTTCATGTACCTTGTTC
Found at i:50455285 original size:23 final size:23
Alignment explanation
Indices: 50455258--50455307 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
50455248 TTGATTACAT
*
50455258 TTTCTAGGTTGCTTTTGGTGCTA
1 TTTCTAGATTGCTTTTGGTGCTA
** *
50455281 TTTCTTTATTGCTTTTGGTGTTA
1 TTTCTAGATTGCTTTTGGTGCTA
50455304 TTTC
1 TTTC
50455308 ATTGTTGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.08, C:0.12, G:0.20, T:0.60
Consensus pattern (23 bp):
TTTCTAGATTGCTTTTGGTGCTA
Found at i:50455331 original size:26 final size:26
Alignment explanation
Indices: 50455265--50455342 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
50455255 CATTTTCTAG
*
50455265 GTTGCTTTTGGTGCTATTTC--T-TT
1 GTTGTTTTTGGTGCTATTTCATTGTT
* * *
50455288 ATTGCTTTTGGTGTTATTTCATTGTT
1 GTTGTTTTTGGTGCTATTTCATTGTT
*
50455314 GTTGTTTTTTGTGCTATTTCATTGTT
1 GTTGTTTTTGGTGCTATTTCATTGTT
50455340 GTT
1 GTT
50455343 TTTAATGTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
23 18 0.39
25 1 0.02
26 27 0.59
ACGTcount: A:0.08, C:0.09, G:0.21, T:0.63
Consensus pattern (26 bp):
GTTGTTTTTGGTGCTATTTCATTGTT
Found at i:50455342 original size:23 final size:23
Alignment explanation
Indices: 50455265--50455345 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
50455255 CATTTTCTAG
*
50455265 GTTGCTTTTGGTGCTATTTCTTT
1 GTTGCTTTTGGTGCTATTTCATT
* *
50455288 ATTGCTTTTGGTGTTATTTCATTGTT
1 GTTGCTTTTGGTGCTATTTCA---TT
* *
50455314 GTTGTTTTTTGTGCTATTTCATT
1 GTTGCTTTTGGTGCTATTTCATT
*
50455337 GTTGTTTTT
1 GTTGCTTTT
50455346 AATGTTGTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 29 0.60
26 19 0.40
ACGTcount: A:0.07, C:0.09, G:0.20, T:0.64
Consensus pattern (23 bp):
GTTGCTTTTGGTGCTATTTCATT
Found at i:50455375 original size:24 final size:25
Alignment explanation
Indices: 50455348--50455400 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
50455338 TTGTTTTTAA
* * *
50455348 TGTTGTTCCGCTACCATTT-TTTGT
1 TGTTGTCCCACTACCATTTCGTTGT
*
50455372 TGTTGTCCCACTGCCATTTCGTTGT
1 TGTTGTCCCACTACCATTTCGTTGT
50455397 TGTT
1 TGTT
50455401 TCACTGTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.08, C:0.23, G:0.19, T:0.51
Consensus pattern (25 bp):
TGTTGTCCCACTACCATTTCGTTGT
Found at i:50461977 original size:30 final size:30
Alignment explanation
Indices: 50461941--50462000 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
50461931 TAACAAGTAT
*
50461941 ATGCCTCTAAAATAATAATAAAATTAACAA
1 ATGCCTCTAAAATAATAACAAAATTAACAA
50461971 ATGCCTCTAAAATAATAACAAAATTAACAA
1 ATGCCTCTAAAATAATAACAAAATTAACAA
50462001 TAAAAAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
ATGCCTCTAAAATAATAACAAAATTAACAA
Found at i:50465001 original size:18 final size:19
Alignment explanation
Indices: 50464978--50465026 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
50464968 AATCGTGTAG
*
50464978 TTCATTTTCAAAAT-ATTA
1 TTCATTTTCAAAATCACTA
*
50464996 TTCATTTAC-AAATCACTA
1 TTCATTTTCAAAATCACTA
*
50465014 TTCAATTTCAAAA
1 TTCATTTTCAAAA
50465027 CGTTTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 4 0.16
18 18 0.72
19 3 0.12
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (19 bp):
TTCATTTTCAAAATCACTA
Found at i:50475288 original size:40 final size:40
Alignment explanation
Indices: 50475233--50475314 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
50475223 AAGCATGTTC
*
50475233 ACATGCCACTGATTCTATTAATTGAAAGTATACAAGGCAT
1 ACATGCCACTAATTCTATTAATTGAAAGTATACAAGGCAT
* *
50475273 ACATGCCACTAATTCTGTTAATTGAAAGTATGCAAGGCAT
1 ACATGCCACTAATTCTATTAATTGAAAGTATACAAGGCAT
50475313 AC
1 AC
50475315 CCCGATAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (40 bp):
ACATGCCACTAATTCTATTAATTGAAAGTATACAAGGCAT
Found at i:50476916 original size:32 final size:32
Alignment explanation
Indices: 50476875--50476942 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
50476865 CCATTACCTA
* *
50476875 TTATATGTGGATGCCTTTGTGGCTATCTGATG
1 TTATATGTGGACGCCTTTGTGGCTATCTAATG
*
50476907 TTATATGTGGACGCCTTTGTGGCTATTTAATG
1 TTATATGTGGACGCCTTTGTGGCTATCTAATG
50476939 TTAT
1 TTAT
50476943 GGATGCCTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.12, G:0.25, T:0.46
Consensus pattern (32 bp):
TTATATGTGGACGCCTTTGTGGCTATCTAATG
Found at i:50476950 original size:28 final size:30
Alignment explanation
Indices: 50476876--50476972 Score: 99
Period size: 32 Copynumber: 3.2 Consensus size: 30
50476866 CATTACCTAT
* *
50476876 TATATGTGGATGCCTTTGTGGCTATCTGATG
1 TATA-GTGGATGCCTTTGTGGCTATTTAATG
*
50476907 TTATATGTGGACGCCTTTGTGGCTATTTAATG
1 -TATA-GTGGATGCCTTTGTGGCTATTTAATG
* *
50476939 T-TA-TGGATGCCTTCGTGGCTACTTTTATG
1 TATAGTGGATGCCTTTGTGGCTA-TTTAATG
50476968 TATAG
1 TATAG
50476973 ACTTCTGTGG
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
28 16 0.29
29 7 0.12
30 4 0.07
31 1 0.02
32 28 0.50
ACGTcount: A:0.18, C:0.13, G:0.26, T:0.43
Consensus pattern (30 bp):
TATAGTGGATGCCTTTGTGGCTATTTAATG
Found at i:50478612 original size:17 final size:17
Alignment explanation
Indices: 50478582--50478616 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
50478572 TAGCATTGTC
50478582 TAAGTGGGAGCTACTGT
1 TAAGTGGGAGCTACTGT
50478599 TAAG-GGGAGACTACTGT
1 TAAGTGGGAG-CTACTGT
50478616 T
1 T
50478617 CAAAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.11, G:0.34, T:0.29
Consensus pattern (17 bp):
TAAGTGGGAGCTACTGT
Found at i:50490099 original size:21 final size:19
Alignment explanation
Indices: 50490073--50490146 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 19
50490063 TATCTAATTA
50490073 TAAATATTTAATTATTATATT
1 TAAATATTTAATTA-TAT-TT
*
50490094 TAAATATTTAAATATATTT
1 TAAATATTTAATTATATTT
* *
50490113 TATATATTCTAATTAAATTT
1 TAAATATT-TAATTATATTT
*
50490133 AATAAATAATTAAT
1 --TAAATATTTAAT
50490147 ATTAATTACT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 9 0.20
20 12 0.27
21 17 0.39
22 6 0.14
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (19 bp):
TAAATATTTAATTATATTT
Found at i:50490380 original size:13 final size:13
Alignment explanation
Indices: 50490359--50490420 Score: 79
Period size: 13 Copynumber: 4.8 Consensus size: 13
50490349 ATACTTAAAT
50490359 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
50490372 TTCTCAAAAACAC
1 TTTTCAAAAGCAC
* *
50490385 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
50490398 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
50490411 TTTTAAAAAG
1 TTTTCAAAAG
50490421 TAATGAAGAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:50490652 original size:15 final size:15
Alignment explanation
Indices: 50490617--50490652 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50490607 AATTAGTTGT
*
50490617 TCAACACTTAATTTT
1 TCAACACTTAATTTA
*
50490632 TTAACACTTAATTTA
1 TCAACACTTAATTTA
50490647 TCAACA
1 TCAACA
50490653 TTATCTTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TCAACACTTAATTTA
Found at i:50491110 original size:18 final size:18
Alignment explanation
Indices: 50491087--50491136 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 18
50491077 AACATTATGT
50491087 GAAAACTAAATAAAATAA
1 GAAAACTAAATAAAATAA
*
50491105 GAAAACTAAATTAAATTAA
1 GAAAACTAAA-TAAAATAA
*
50491124 AAAATACTAAATA
1 GAAA-ACTAAATA
50491137 TATAGTTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 10 0.36
19 12 0.43
20 6 0.21
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.22
Consensus pattern (18 bp):
GAAAACTAAATAAAATAA
Found at i:50491782 original size:22 final size:22
Alignment explanation
Indices: 50491720--50491783 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
50491710 GAAATAGAGG
* * *
50491720 ATATCAAATACAGTTGCAAAAC
1 ATATCAGATACAGATGCAGAAC
50491742 ATATCAGATACAGATGCAGAAC
1 ATATCAGATACAGATGCAGAAC
* *
50491764 ATATTAGATATAGATGCAGA
1 ATATCAGATACAGATGCAGA
50491784 TTCCTACCCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (22 bp):
ATATCAGATACAGATGCAGAAC
Found at i:50496880 original size:23 final size:24
Alignment explanation
Indices: 50496827--50496880 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
50496817 CATCAAAATG
50496827 CCAAAATGATATGCACTGAAGTGA
1 CCAAAATGATATGCACTGAAGTGA
* *
50496851 -CAGAATGATATGCATTGAAGT-A
1 CCAAAATGATATGCACTGAAGTGA
50496873 CCAAAATG
1 CCAAAATG
50496881 TTCCCACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.43, C:0.15, G:0.20, T:0.22
Consensus pattern (24 bp):
CCAAAATGATATGCACTGAAGTGA
Found at i:50499190 original size:136 final size:136
Alignment explanation
Indices: 50498942--50499203 Score: 380
Period size: 136 Copynumber: 1.9 Consensus size: 136
50498932 CTGCCAAAAT
* * * *
50498942 AGTAAACATGAGTTCATATTGTGTAAGACCATATCTAGGCTATGACAACAAATGAAGTCTGCTAG
1 AGTAAACATGAGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAG
* * ** *
50499007 GATATTAAACATGGGTTCATATTGCGTAAGACCATAGTTAGGCTATGGCAGCAAATAAAGTGCGC
66 GACAATAAACATGGGTTCATATTGCGTAAGACCATAACTAGGCTATGGCAACAAATAAAGTGCGC
50499072 TAGGAC
131 TAGGAC
* * *
50499078 AGTAAACATGGGTTCATATTTTGTAAGACCATAACTGGGCTATGACAACAAATAAAGTCCGCCAG
1 AGTAAACATGAGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAG
* * * *
50499143 GACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGTTATGGCAACAAATGAAGT
66 GACAATAAACATGGGTTCATATTGCGTAAGACCATAACTAGGCTATGGCAACAAATAAAGT
50499204 CCGCCAAGAT
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
136 110 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (136 bp):
AGTAAACATGAGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAG
GACAATAAACATGGGTTCATATTGCGTAAGACCATAACTAGGCTATGGCAACAAATAAAGTGCGC
TAGGAC
Found at i:50499205 original size:68 final size:68
Alignment explanation
Indices: 50498944--50499209 Score: 343
Period size: 68 Copynumber: 3.9 Consensus size: 68
50498934 GCCAAAATAG
* * * * *
50498944 TAAACATGAGTTCATATTGTGTAAGACCATATCTAGGCTATGACAACAAATGAAGTCTGCTAGGA
1 TAAACATGGGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAGGA
* *
50499009 TAT
66 CAA
* ** * * * *
50499012 TAAACATGGGTTCATATTGCGTAAGACCATAGTTAGGCTATGGCAGCAAATAAAGTGCGCTAGGA
1 TAAACATGGGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAGGA
*
50499077 CAG
66 CAA
* *
50499080 TAAACATGGGTTCATATTTTGTAAGACCATAACTGGGCTATGACAACAAATAAAGTCCGCCAGGA
1 TAAACATGGGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAGGA
50499145 CAA
66 CAA
* * * *
50499148 TAAACATGGGTTCATATTGTGTAAGACCATAACTGGGTTATGGCAACAAATGAAGTCCGCCA
1 TAAACATGGGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCA
50499210 AGATGGTGAA
Statistics
Matches: 173, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 173 1.00
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (68 bp):
TAAACATGGGTTCATATTGTGTAAGACCATAACTAGGCTATGACAACAAATAAAGTCCGCCAGGA
CAA
Found at i:50500510 original size:20 final size:20
Alignment explanation
Indices: 50500473--50500511 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50500463 TATAACATGG
*
50500473 ACATAACTTACCATTTCAAT
1 ACATAACTTACCAATTCAAT
50500493 ACATAACTTTA-CAATTCAA
1 ACATAAC-TTACCAATTCAA
50500512 CATGATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (20 bp):
ACATAACTTACCAATTCAAT
Found at i:50506866 original size:15 final size:15
Alignment explanation
Indices: 50506846--50506897 Score: 72
Period size: 14 Copynumber: 3.6 Consensus size: 15
50506836 TGATAAATTG
50506846 AAAAATTAAGTACTA
1 AAAAATTAAGTACTA
*
50506861 AAAAA-TAAGTGCTA
1 AAAAATTAAGTACTA
*
50506875 AAAAATTAAGTA-TT
1 AAAAATTAAGTACTA
50506889 AAAAATTAA
1 AAAAATTAA
50506898 TGCATTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 23 0.70
15 10 0.30
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.27
Consensus pattern (15 bp):
AAAAATTAAGTACTA
Found at i:50507046 original size:19 final size:18
Alignment explanation
Indices: 50507022--50507070 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
50507012 ATTTATACTT
*
50507022 AATTTTTAACTATTTCATA
1 AATTTTAAAC-ATTTCATA
50507041 AATTTTAAACATTTCATA
1 AATTTTAAACATTTCATA
*
50507059 TTATTTTAAACA
1 -AATTTTAAACA
50507071 AAATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTTTAAACATTTCATA
Found at i:50514868 original size:136 final size:136
Alignment explanation
Indices: 50514685--50514948 Score: 406
Period size: 136 Copynumber: 1.9 Consensus size: 136
50514675 CTTCAAAGGT
* *
50514685 AGAATTTGTGTATCGACAAAATTCTGATCTTATTCAGAAGATTATACAGGAAGCTCACAATAGT-
1 AGAATTTGTGTACCGACAAAATTCTGATCTTATTCAGAAGATTATACAGGAAGCTCAAAATAGTA
* *
50514749 CTATTGTCTATTCATCTTGGTAGCAATAAAATATACAGTGATTTGAAACAAATGTATTGGTGGCC
66 C-A-TGTCTATTCATCCTAGTAGCAATAAAATATACAGTGATTTGAAACAAATGTATTGGTGGCC
50514814 GGGTAGGC
129 GGGTAGGC
*
50514822 AGAATTTGTGTACCGA-TAAATTCTGATCTTATTCAGAAGATTATACAGGAAGCTCAAAATAGTA
1 AGAATTTGTGTACCGACAAAATTCTGATCTTATTCAGAAGATTATACAGGAAGCTCAAAATAGTA
* * * *
50514886 GCATGTCTATTCATCCTAGTAGTAATAAAATGTACGGTGATTTGAAATAAATGTATTGGTGGC
66 -CATGTCTATTCATCCTAGTAGCAATAAAATATACAGTGATTTGAAACAAATGTATTGGTGGC
50514949 TAGGTATGAA
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
136 99 0.85
137 16 0.14
138 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (136 bp):
AGAATTTGTGTACCGACAAAATTCTGATCTTATTCAGAAGATTATACAGGAAGCTCAAAATAGTA
CATGTCTATTCATCCTAGTAGCAATAAAATATACAGTGATTTGAAACAAATGTATTGGTGGCCGG
GTAGGC
Found at i:50516385 original size:581 final size:582
Alignment explanation
Indices: 50515269--50516429 Score: 2040
Period size: 581 Copynumber: 2.0 Consensus size: 582
50515259 TATTATTTCT
* *
50515269 GATAGGGATCCGCGATTTACATTTCGATTTTGGAGTAGGTTACATGAGGCTCTAGGTACTCGTTT
1 GATAGGGATCCGCGATTTACATCTCGATTCTGGAGTAGGTTACATGAGGCTCTAGGTACTCGTTT
* *
50515334 ACTTTTTAATACCGCATTTCATCCTCAGACTGATGGTCAGTTCGAGCAAGTGATTTAGGTACTCA
66 ACTTTTTAATACCGCATTTCATCCTCAGACTGATAGTCAGTTCGAGCAAGTGATTTAGATACTCA
50515399 AAGATATGCTTCGATGTTATGTTCTAGAGTTTGAAGGTAACTGGAAGAGATTCCTATCGTTAGTT
131 AAGATATGCTTCGATGTTATGTTCTAGAGTTTGAAGGTAACTGGAAGAGATTCCTATCGTTAGTT
50515464 GAATTCACATACAACAACAGTCATCAATCGAGCATAAAGATGGCACCATACAAAGCTTTATATGG
196 GAATTCACATACAACAACAGTCATCAATCGAGCATAAAGATGGCACCATACAAAGCTTTATATGG
*
50515529 TCGAAAGTGTCGAACTCTATTGTATTGGACCGAGCCTAGTAAGAAAAAGCTTTACTGGGTTGATT
261 TCGAAAGTGTCGAACTCTATTGTATTGGACCGAGCCTAGTAAGAAAAAGCTTCACTGGGTTGATT
* *
50515594 TGATATGAGAAACCAAAGAAAAGGTTAAAGTGATTCAAGACAGTTTGAAAGCAACTTTAGATCAA
326 TGATATGAGAAACCAAAGAAAAAGTTAAAGTGATTCAAGACAGTTTGAAAGCAACTTCAGATCAA
* * *
50515659 CAGAAATTGTATACGGATTTGAAAAGAAAAGACATTGAATTTCAAGTCAGCGATAAAGTGTTTTT
391 CAAAAATCGTATACGGATTTGAAAAGAAAAGACATTGAATTTCAAGTCAGCAATAAAGTGTTTTT
50515724 AAAAGTCTCACCCTGGAAGAAAGTTCTTCGATTCGGTCGTAAAGAAAAGCTAAGTCCGAGGTTTA
456 AAAAGTCTCACCCTGGAAGAAAGTTCTTCGATTCGGTCGTAAAGAAAAGCTAAGTCCGAGGTTTA
* *
50515789 TTGGGCCATTTGAGATCACTGAAAGAATCAGGTCAGTAGCTTATAGATTAGCTTTGCCATCA
521 TTGGGCCATTTGAGATCACTGAAAGAATCAAGTCAGTAGCTTACAGATTAGCTTTGCCATCA
* *
50515851 GATAGGGAT-CGTGATTTACATCTCGATTCTGGAGTAGGTTACATGAGGCTCTAGGTACTTGTTT
1 GATAGGGATCCGCGATTTACATCTCGATTCTGGAGTAGGTTACATGAGGCTCTAGGTACTCGTTT
50515915 ACTTTTTAATACCGCATTTCATCCTCAGACTGATAGTCAG-TCTGAGCAAGTGATTTAGATACTC
66 ACTTTTTAATACCGCATTTCATCCTCAGACTGATAGTCAGTTC-GAGCAAGTGATTTAGATACTC
* * *
50515979 AAATATATGGCTT-GATGTTGTGTTCTAGAGTTTGAAGGTAACTGGGAGAGATTCCTATCGTTAG
130 AAAGATAT-GCTTCGATGTTATGTTCTAGAGTTTGAAGGTAACTGGAAGAGATTCCTATCGTTAG
*
50516043 TTGAATTCGCATACAACAACAGTCATCAATCGAGCATAAAGATGGCACCATACAAAGCTTTATAT
194 TTGAATTCACATACAACAACAGTCATCAATCGAGCATAAAGATGGCACCATACAAAGCTTTATAT
* * * *
50516108 GGTCGAAAGTTTCGAACTCTATTGTATTGGACTGAGCCTAGTGAGAAAAAGCTTCATTGGGTTGA
259 GGTCGAAAGTGTCGAACTCTATTGTATTGGACCGAGCCTAGTAAGAAAAAGCTTCACTGGGTTGA
** *
50516173 TTTGATATGAGAAACCAAAGAAAAAGTTAAAGTGATTTGAGACAGTTTGAAAGCAGCTTCAGATC
324 TTTGATATGAGAAACCAAAGAAAAAGTTAAAGTGATTCAAGACAGTTTGAAAGCAACTTCAGATC
*
50516238 AACAAAAATCGTATACGGATTTGAAAAGAAAAGACATTGAATTTCAAGTCGGCAATAAAGTGTTT
389 AACAAAAATCGTATACGGATTTGAAAAGAAAAGACATTGAATTTCAAGTCAGCAATAAAGTGTTT
50516303 TTAAAAGTCTCACCCTGGAAGAAAGTTCTTCGATTCGGTCGTAAAGAAAAGCTAAGTCCGAGGTT
454 TTAAAAGTCTCACCCTGGAAGAAAGTTCTTCGATTCGGTCGTAAAGAAAAGCTAAGTCCGAGGTT
*
50516368 TATTGGGCTATTTGAGATCACTGAAAGAATCAAGTCAGTAGCTTACAGATTAGCTTTGCCAT
519 TATTGGGCCATTTGAGATCACTGAAAGAATCAAGTCAGTAGCTTACAGATTAGCTTTGCCAT
50516430 AGAAGTTAGA
Statistics
Matches: 550, Mismatches: 27, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
580 2 0.00
581 535 0.97
582 13 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (582 bp):
GATAGGGATCCGCGATTTACATCTCGATTCTGGAGTAGGTTACATGAGGCTCTAGGTACTCGTTT
ACTTTTTAATACCGCATTTCATCCTCAGACTGATAGTCAGTTCGAGCAAGTGATTTAGATACTCA
AAGATATGCTTCGATGTTATGTTCTAGAGTTTGAAGGTAACTGGAAGAGATTCCTATCGTTAGTT
GAATTCACATACAACAACAGTCATCAATCGAGCATAAAGATGGCACCATACAAAGCTTTATATGG
TCGAAAGTGTCGAACTCTATTGTATTGGACCGAGCCTAGTAAGAAAAAGCTTCACTGGGTTGATT
TGATATGAGAAACCAAAGAAAAAGTTAAAGTGATTCAAGACAGTTTGAAAGCAACTTCAGATCAA
CAAAAATCGTATACGGATTTGAAAAGAAAAGACATTGAATTTCAAGTCAGCAATAAAGTGTTTTT
AAAAGTCTCACCCTGGAAGAAAGTTCTTCGATTCGGTCGTAAAGAAAAGCTAAGTCCGAGGTTTA
TTGGGCCATTTGAGATCACTGAAAGAATCAAGTCAGTAGCTTACAGATTAGCTTTGCCATCA
Found at i:50517915 original size:3 final size:3
Alignment explanation
Indices: 50517907--50517940 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
50517897 GTTCTTTGAT
*
50517907 TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
50517941 CACATATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:50522548 original size:6 final size:6
Alignment explanation
Indices: 50522537--50522561 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
50522527 ACGTCATGCA
50522537 CCAGAG CCAGAG CCAGAG CCAGAG C
1 CCAGAG CCAGAG CCAGAG CCAGAG C
50522562 TGGAGCCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:50523115 original size:27 final size:27
Alignment explanation
Indices: 50523075--50523153 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
50523065 CACCATTCAT
* *
50523075 GCCTCTGAGTTAGGCACAACTAGTCGC
1 GCCTCTGAGATAGGCTCAACTAGTCGC
*
50523102 GCCTGTGAGATAGGCTCAACTAGTCGC
1 GCCTCTGAGATAGGCTCAACTAGTCGC
50523129 GCCTCTGAGATAGGCTCAACTAGTC
1 GCCTCTGAGATAGGCTCAACTAGTC
50523154 AGCATGTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (27 bp):
GCCTCTGAGATAGGCTCAACTAGTCGC
Found at i:50527754 original size:33 final size:33
Alignment explanation
Indices: 50527706--50527796 Score: 96
Period size: 33 Copynumber: 2.7 Consensus size: 33
50527696 AGTAAAAACT
*
50527706 TTAATATTACATAATATATATTA-AAATTTATA
1 TTAATATTATATAATATATATTAGAAATTTATA
*
50527738 TTAATACTTATATAATATA-ATATAGAATTTTATA
1 TTAATA-TTATATAATATATAT-TAGAAATTTATA
*
50527772 TTATTATATTATGTAATACTATATT
1 TTA--ATATTATATAATA-TATATT
50527797 TATGAGAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
32 8 0.16
33 13 0.27
34 11 0.22
35 9 0.18
36 6 0.12
37 2 0.04
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.49
Consensus pattern (33 bp):
TTAATATTATATAATATATATTAGAAATTTATA
Found at i:50539820 original size:15 final size:15
Alignment explanation
Indices: 50539800--50539828 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50539790 CCACCCTTCT
50539800 GCCTTTTGCTTTTTG
1 GCCTTTTGCTTTTTG
50539815 GCCTTTTGCTTTTT
1 GCCTTTTGCTTTTT
50539829 CCCTCTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.21, G:0.17, T:0.62
Consensus pattern (15 bp):
GCCTTTTGCTTTTTG
Found at i:50540474 original size:29 final size:28
Alignment explanation
Indices: 50540425--50540479 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
50540415 AATATATAAA
* * * *
50540425 TTTTCTAAATATTAAATAAAATATCATT
1 TTTTCTAAAAAATAAAAAAAAAATCATT
50540453 TTTTCTAAAAAATAGAAAAAAAAATCA
1 TTTTCTAAAAAATA-AAAAAAAAATCA
50540480 ATGTGAGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 12 0.55
29 10 0.45
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (28 bp):
TTTTCTAAAAAATAAAAAAAAAATCATT
Found at i:50545221 original size:16 final size:16
Alignment explanation
Indices: 50545200--50545233 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
50545190 AGTACTTTTC
*
50545200 TTTTTCTATTTTCTTT
1 TTTTTCCATTTTCTTT
*
50545216 TTTTTCCCTTTTCTTT
1 TTTTTCCATTTTCTTT
50545232 TT
1 TT
50545234 GCTCATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTCCATTTTCTTT
Found at i:50550850 original size:15 final size:15
Alignment explanation
Indices: 50550819--50550850 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50550809 TAAACCTACG
*
50550819 AATGTAACTTGTGAA
1 AATGTAACTTGTAAA
50550834 AATGTAACTTGTAAA
1 AATGTAACTTGTAAA
50550849 AA
1 AA
50550851 GTTTCCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (15 bp):
AATGTAACTTGTAAA
Found at i:50556028 original size:19 final size:20
Alignment explanation
Indices: 50555993--50556030 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
50555983 TTGGGTCAGG
50555993 GACTAAATTGTAATAAATTA
1 GACTAAATTGTAATAAATTA
50556013 GACTAAATTG-AATAAATT
1 GACTAAATTGTAATAAATT
50556031 TGAAAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (20 bp):
GACTAAATTGTAATAAATTA
Found at i:50560993 original size:17 final size:19
Alignment explanation
Indices: 50560971--50561011 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
50560961 CATTCAATCG
*
50560971 AATTTTAT-AATTTTTAA-
1 AATTTTATAAATTATTAAT
50560988 AATTTTATAAATTATTAAT
1 AATTTTATAAATTATTAAT
50561007 AATTT
1 AATTT
50561012 ATTTAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 8 0.38
19 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTTATAAATTATTAAT
Found at i:50561310 original size:21 final size:21
Alignment explanation
Indices: 50561285--50561340 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
50561275 ATTTTTTCAG
50561285 GAAGAAAAAGCTGAAAATCAA
1 GAAGAAAAAGCTGAAAATCAA
*
50561306 GAAGAAAAAGCTGAAAATTAA
1 GAAGAAAAAGCTGAAAATCAA
*
50561327 GAAGAAAAATCTGA
1 GAAGAAAAAGCTGA
50561341 TTTGTTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.61, C:0.07, G:0.20, T:0.12
Consensus pattern (21 bp):
GAAGAAAAAGCTGAAAATCAA
Found at i:50567605 original size:5 final size:5
Alignment explanation
Indices: 50567595--50567638 Score: 72
Period size: 5 Copynumber: 8.8 Consensus size: 5
50567585 ATAAGGACTA
50567595 AAAAT AAAAT AAAAT AAAAT AAAAT AAACA- AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AAAA
50567639 GTAAGGAGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 1 0.03
5 35 0.95
6 1 0.03
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:50574183 original size:18 final size:18
Alignment explanation
Indices: 50574155--50574199 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
50574145 CGTTTGTTTC
*
50574155 CAAAACATTATTC-ATTT
1 CAAAACGTTATTCAATTT
*
50574172 ACAAATCGTTATTCAATTT
1 -CAAAACGTTATTCAATTT
50574191 CAAAACGTT
1 CAAAACGTT
50574200 TTTTATTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCAATTT
Found at i:50578224 original size:76 final size:76
Alignment explanation
Indices: 50578095--50578379 Score: 342
Period size: 76 Copynumber: 3.8 Consensus size: 76
50578085 ACGTTGGTTT
* * * * **
50578095 ATATGACTAGCGCT-GCATGCAAATCTTTGTCGATTTATTCAACTACAGCTGGGCACACAATTAA
1 ATATGACTAGCTCTAG-GTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACACAATTAA
50578159 TATTGTCAGTTA
65 TATTGTCAGTTA
* *
50578171 ATTTGACTAGCTCTAGGTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACATAATTAAT
1 ATATGACTAGCTCTAGGTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACACAATTAAT
**
50578236 ATCATCAGTTA
66 ATTGTCAGTTA
** * * *
50578247 ATATGTGTAG-TGCTAGGCGTAAATCTTTGTCAATTTATTCGACTAGTGTTGGGCACACAATTAA
1 ATATGACTAGCT-CTAGGTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACACAATTAA
50578311 TATTGTCAGTTA
65 TATTGTCAGTTA
* * ** *
50578323 ATCTGACTATCAT-TTTGTGCAAATCTTTGTCAATTTATTCGACTAGTGCAGGGCACA
1 ATATGACTAGC-TCTAGGTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACA
50578380 TCTAATGTCA
Statistics
Matches: 176, Mismatches: 29, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
75 1 0.01
76 173 0.98
77 1 0.01
78 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (76 bp):
ATATGACTAGCTCTAGGTGCAAATCTTTGTCAATTTATTCGACTAGTGCTGGGCACACAATTAAT
ATTGTCAGTTA
Found at i:50585400 original size:21 final size:21
Alignment explanation
Indices: 50585353--50585407 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
50585343 ACCATTGTTT
* *
50585353 CTAATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAATAA
*
50585374 CCAATCTCACCGCTACAATAA
1 CTAATCTCACCGCTACAATAA
*
50585395 CTAATCTTACCGC
1 CTAATCTCACCGC
50585408 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.38, G:0.07, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAATAA
Found at i:50587475 original size:27 final size:28
Alignment explanation
Indices: 50587418--50587475 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
50587408 GCGGTACGTG
* **
50587418 TATATTAAAACAACTCAACTTTGGTTTA
1 TATATTAAAACAACTCAAATTTGGTAAA
50587446 TATATTAAAA-ACACT-AAATTTGGTAAA
1 TATATTAAAACA-ACTCAAATTTGGTAAA
50587473 TAT
1 TAT
50587476 GTGATTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (28 bp):
TATATTAAAACAACTCAAATTTGGTAAA
Found at i:50594716 original size:20 final size:22
Alignment explanation
Indices: 50594687--50594726 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
50594677 AAATGATAAG
50594687 TACTTAAAAT-CAT-GAAATTA
1 TACTTAAAATACATAGAAATTA
*
50594707 TACTTGAAATACATAGAAAT
1 TACTTAAAATACATAGAAAT
50594727 GATAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (22 bp):
TACTTAAAATACATAGAAATTA
Found at i:50598703 original size:40 final size:40
Alignment explanation
Indices: 50598648--50598847 Score: 337
Period size: 40 Copynumber: 5.0 Consensus size: 40
50598638 GCATTTGTAT
*
50598648 ATATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
50598688 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
50598728 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
50598768 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
50598808 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
50598848 CTATGCCCGT
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:50615651 original size:29 final size:29
Alignment explanation
Indices: 50615608--50615668 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
50615598 NNNNNNNNNN
* *
50615608 TAAAACACTTGAACTAATTAGGACATAAT
1 TAAAACACCTAAACTAATTAGGACATAAT
*
50615637 TAAAACACCTAAACTAATTAGGACATATT
1 TAAAACACCTAAACTAATTAGGACATAAT
50615666 TAA
1 TAA
50615669 TAATATCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (29 bp):
TAAAACACCTAAACTAATTAGGACATAAT
Found at i:50616949 original size:55 final size:56
Alignment explanation
Indices: 50616845--50616950 Score: 135
Period size: 56 Copynumber: 1.9 Consensus size: 56
50616835 ATTAATGCCG
* * *
50616845 TCCATGCATGGGAACATCTCATTAAATCCATGTCTTTGCTTCCCTTTAAATGCCAT
1 TCCATGCATGGGAACATCTCATTAAATCCATGGCTTTGCTTCACATTAAATGCCAT
* * *
50616901 TCCATGCATGGGAACATCTCCTT-AATTCGTGGCTTTGCTGT-ACATTAAAT
1 TCCATGCATGGGAACATCTCATTAAATCCATGGCTTTGCT-TCACATTAAAT
50616951 CAGCAAGCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
55 20 0.47
56 23 0.53
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (56 bp):
TCCATGCATGGGAACATCTCATTAAATCCATGGCTTTGCTTCACATTAAATGCCAT
Found at i:50617246 original size:23 final size:22
Alignment explanation
Indices: 50617212--50617276 Score: 103
Period size: 23 Copynumber: 2.9 Consensus size: 22
50617202 GAACACCTTT
*
50617212 AAAACATGCATTAAATTCGGCC
1 AAAACATACATTAAATTCGGCC
50617234 AGAAACATACATTAAATTCGGCC
1 A-AAACATACATTAAATTCGGCC
50617257 AAAGACATACATTAAATTCG
1 AAA-ACATACATTAAATTCG
50617277 TCTGGAAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 3 0.08
23 37 0.93
ACGTcount: A:0.45, C:0.20, G:0.12, T:0.23
Consensus pattern (22 bp):
AAAACATACATTAAATTCGGCC
Found at i:50617514 original size:13 final size:13
Alignment explanation
Indices: 50617498--50617532 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
50617488 TTTAAACAAA
*
50617498 TTAATTAACTTAT
1 TTAATTAACTAAT
50617511 TTAATTAACTAAT
1 TTAATTAACTAAT
*
50617524 TTAACTAAC
1 TTAATTAAC
50617533 AACAACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAATTAACTAAT
Found at i:50624735 original size:21 final size:21
Alignment explanation
Indices: 50624701--50624741 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50624691 AAAATACAAG
*
50624701 TGAAAAAGAAGAAAATGAAAA
1 TGAAAAAGAAGAAAAGGAAAA
**
50624722 TGAAAAAGGCGAAAAGGAAA
1 TGAAAAAGAAGAAAAGGAAA
50624742 GCGAGAGAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.02, G:0.24, T:0.07
Consensus pattern (21 bp):
TGAAAAAGAAGAAAAGGAAAA
Found at i:50624840 original size:36 final size:33
Alignment explanation
Indices: 50624775--50624841 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 33
50624765 GTGAATGAAG
*
50624775 TGAGTGAACAAGAGAGAGAGCTTAAACAAGGAA
1 TGAGTGAACAAGAGAGAGAGCTAAAACAAGGAA
* *
50624808 TGAGTGAAGAAGAAGAGAGTGCTCAAATACAAGG
1 TGAGTGAACAAG-AGAGAGAGCT-AAA-ACAAGG
50624842 GAGGAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 11 0.39
34 9 0.32
35 2 0.07
36 6 0.21
ACGTcount: A:0.46, C:0.09, G:0.31, T:0.13
Consensus pattern (33 bp):
TGAGTGAACAAGAGAGAGAGCTAAAACAAGGAA
Found at i:50629953 original size:6 final size:6
Alignment explanation
Indices: 50629942--50629967 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50629932 AGTTGTAAAG
50629942 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
50629968 ATTTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:50641815 original size:6 final size:6
Alignment explanation
Indices: 50641804--50641829 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
50641794 AGTTGTAAAG
50641804 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
50641830 ACTTACTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:50666304 original size:14 final size:14
Alignment explanation
Indices: 50666285--50666311 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50666275 TACATTGGAC
50666285 AGATTCATGCATGT
1 AGATTCATGCATGT
50666299 AGATTCATGCATG
1 AGATTCATGCATG
50666312 GGAAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50668717 original size:31 final size:33
Alignment explanation
Indices: 50668656--50668724 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
50668646 AAGCCTATTT
50668656 AATGTGTCTGGCCGAATTAATTGTGTGTGTCTA
1 AATGTGTCTGGCCGAATTAATTGTGTGTGTCTA
50668689 AATGTGTCTGGCCGAATTAA-T-TGTGTGTCTA
1 AATGTGTCTGGCCGAATTAATTGTGTGTGTCTA
50668720 AATGT
1 AATGT
50668725 TAAATTAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 15 0.42
32 1 0.03
33 20 0.56
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (33 bp):
AATGTGTCTGGCCGAATTAATTGTGTGTGTCTA
Found at i:50675570 original size:16 final size:16
Alignment explanation
Indices: 50675541--50675584 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
50675531 TTTTTCAGCT
50675541 TTCTTTTCTTGCTCACA
1 TTCTTTT-TTGCTCACA
*
50675558 TTCTTTTTTGCTCTCA
1 TTCTTTTTTGCTCACA
*
50675574 ATCTCTTTTTG
1 TTCT-TTTTTG
50675585 ATCTCTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.09, C:0.25, G:0.07, T:0.59
Consensus pattern (16 bp):
TTCTTTTTTGCTCACA
Found at i:50675582 original size:17 final size:16
Alignment explanation
Indices: 50675542--50675589 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
50675532 TTTTCAGCTT
* *
50675542 TCTTTTCTTGCTCACAT
1 TCTTTT-TTGCTCTCAA
50675559 TCTTTTTTGCTCTCAA
1 TCTTTTTTGCTCTCAA
*
50675575 TCTCTTTTTGATCTC
1 TCT-TTTTTGCTCTC
50675590 TTTCATTCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.10, C:0.27, G:0.06, T:0.56
Consensus pattern (16 bp):
TCTTTTTTGCTCTCAA
Found at i:50682532 original size:21 final size:19
Alignment explanation
Indices: 50682489--50682532 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
50682479 GAGCTCAAAT
* *
50682489 GAGCTGAAATGAGTTCATG
1 GAGCTGAAATGAGCTAATG
50682508 GAGCTGGAAATGAGCTAATTG
1 GAGCT-GAAATGAGCTAA-TG
50682529 GAGC
1 GAGC
50682533 CCAATGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 10 0.48
21 6 0.29
ACGTcount: A:0.32, C:0.11, G:0.34, T:0.23
Consensus pattern (19 bp):
GAGCTGAAATGAGCTAATG
Found at i:50685835 original size:13 final size:13
Alignment explanation
Indices: 50685817--50685843 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50685807 AAATACAACC
50685817 TTTTTTTTACAAA
1 TTTTTTTTACAAA
50685830 TTTTTTTTACAAA
1 TTTTTTTTACAAA
50685843 T
1 T
50685844 CTACTTACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTTTTTACAAA
Found at i:50687637 original size:20 final size:20
Alignment explanation
Indices: 50687573--50687626 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
50687563 CATGTGGTTC
* * *
50687573 AGCTCATTTGAGCTCAAGTA
1 AGCTCATTCGAGCTCAATTT
50687593 AGCTCATTCGAGCTCAATTT
1 AGCTCATTCGAGCTCAATTT
50687613 AGCTCATT-GAGCTC
1 AGCTCATTCGAGCTC
50687627 GTTATTAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 6 0.19
20 25 0.81
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCATTCGAGCTCAATTT
Found at i:50697390 original size:21 final size:21
Alignment explanation
Indices: 50697346--50697406 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
50697336 TCCTTTTCAC
50697346 CTTTTTCATTTTCATTTTCTT
1 CTTTTTCATTTTCATTTTCTT
50697367 CTTTTTCACTTTT-ATTTT-TCT
1 CTTTTTCA-TTTTCATTTTCT-T
* * *
50697388 CTTCTTCTTTTTCTTTTTC
1 CTTTTTCATTTTCATTTTC
50697407 CTCACTTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
20 5 0.15
21 24 0.73
22 4 0.12
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTTTTCATTTTCATTTTCTT
Found at i:50700632 original size:46 final size:46
Alignment explanation
Indices: 50700581--50700672 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
50700571 GTGTGGCGTT
50700581 CATCATATACCAAGGATCCTATCATCCTTGATAGTGGGTCGAGGTC
1 CATCATATACCAAGGATCCTATCATCCTTGATAGTGGGTCGAGGTC
* *
50700627 CATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAGGTC
1 CATCATATACCAAGGATCCTATCATCCTTGATAGTGGGTCGAGGTC
50700673 TTTTCTTTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (46 bp):
CATCATATACCAAGGATCCTATCATCCTTGATAGTGGGTCGAGGTC
Found at i:50701388 original size:24 final size:25
Alignment explanation
Indices: 50701342--50701388 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
50701332 AAGAATTTGG
*
50701342 CTAAATGAATTGATGATGGAAATGA
1 CTAAATGAATTGATGATGAAAATGA
* *
50701367 CTAAGTGAA-TGATGGTGAAAAT
1 CTAAATGAATTGATGATGAAAAT
50701389 TCGGCTAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.28
Consensus pattern (25 bp):
CTAAATGAATTGATGATGAAAATGA
Found at i:50719614 original size:13 final size:12
Alignment explanation
Indices: 50719596--50719639 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
50719586 TAAAAAAAAT
* *
50719596 AAAAAAACTTGA
1 AAAAAAAATTCA
*
50719608 AAAAAAAATTTTA
1 AAAAAAAA-TTCA
50719621 AAAAAAAATTCA
1 AAAAAAAATTCA
50719633 AAAAAAA
1 AAAAAAA
50719640 GTTTGTATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:50719703 original size:14 final size:14
Alignment explanation
Indices: 50719684--50719733 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
50719674 AGTATTTAAG
50719684 AAAAAAAGAAGAAA
1 AAAAAAAGAAGAAA
**
50719698 AAAAAATTCAGAATTAA
1 AAAAAA---AGAAGAAA
50719715 AAAAAAAGAAGAAA
1 AAAAAAAGAAGAAA
50719729 AAAAA
1 AAAAA
50719734 TCGAAATTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
14 17 0.59
17 12 0.41
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (14 bp):
AAAAAAAGAAGAAA
Found at i:50719729 original size:29 final size:29
Alignment explanation
Indices: 50719683--50719751 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
50719673 TAGTATTTAA
*
50719683 GAAAAAAAGAAGAAAAAAAAATTC-AGAATT
1 GAAAAAAA-AAGAAAAAAAAAATCGA-AATT
50719713 -AAAAAAAAAGAAGAAAAAAAATCGAAATT
1 GAAAAAAAAAGAA-AAAAAAAATCGAAATT
50719742 GAAAAAAAAA
1 GAAAAAAAAA
50719752 AGAGTGATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 5 0.14
29 20 0.57
30 10 0.29
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (29 bp):
GAAAAAAAAAGAAAAAAAAAATCGAAATT
Found at i:50719754 original size:28 final size:29
Alignment explanation
Indices: 50719683--50719754 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
50719673 TAGTATTTAA
*
50719683 GAAAAAAAGAAGAAAAAAAAATTCAGAATT
1 GAAAAAAAAAAG-AAAAAAAATTCAGAATT
*
50719713 AAAAAAAAAGAAGAAAAAAAA-TC-GAAATT
1 GAAAAAAAA-AAGAAAAAAAATTCAG-AATT
50719742 GAAAAAAAAAAGA
1 GAAAAAAAAAAGA
50719755 GTGATTGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 5 0.14
29 14 0.38
30 15 0.41
31 3 0.08
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (29 bp):
GAAAAAAAAAAGAAAAAAAATTCAGAATT
Found at i:50720625 original size:15 final size:16
Alignment explanation
Indices: 50720605--50720636 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
50720595 AGAAAATGAA
50720605 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
50720620 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
50720636 A
1 A
50720637 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:50720698 original size:48 final size:46
Alignment explanation
Indices: 50720635--50720764 Score: 169
Period size: 42 Copynumber: 2.8 Consensus size: 46
50720625 AAAAGAAGAT
* * *
50720635 GAGTGTGAGATAGAAAAGAAAATTGAAAATGAGATTGAGAATAAAAAC
1 GAGTGTGAAAAAGAAAAGAAAACTGAAAA-GAGA-TGAGAATAAAAAC
50720683 GAGTGTGAAAAAGAAAAGAAAACTG-AAA-A-A-GAGAATAAAAAC
1 GAGTGTGAAAAAGAAAAGAAAACTGAAAAGAGATGAGAATAAAAAC
50720725 GAGTGTGAAAAAGAAAAGAAAACTGAAAAAGAGAGTGAGA
1 GAGTGTGAAAAAGAAAAGAAAACTG-AAAAGAGA-TGAGA
50720765 TTGAAGAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
42 37 0.51
44 4 0.05
45 2 0.03
46 1 0.01
47 3 0.04
48 26 0.36
ACGTcount: A:0.58, C:0.03, G:0.25, T:0.13
Consensus pattern (46 bp):
GAGTGTGAAAAAGAAAAGAAAACTGAAAAGAGATGAGAATAAAAAC
Found at i:50720704 original size:24 final size:24
Alignment explanation
Indices: 50720677--50720746 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 24
50720667 GATTGAGAAT
50720677 AAAAACGAGTGTGAAAAAGAAAAG
1 AAAAACGAGTGTGAAAAAGAAAAG
* *
50720701 -AAAAC-----TGAAAAAGAGAAT
1 AAAAACGAGTGTGAAAAAGAAAAG
50720719 AAAAACGAGTGTGAAAAAGAAAAG
1 AAAAACGAGTGTGAAAAAGAAAAG
50720743 AAAA
1 AAAA
50720747 CTGAAAAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
18 11 0.31
19 5 0.14
23 5 0.14
24 15 0.42
ACGTcount: A:0.66, C:0.04, G:0.21, T:0.09
Consensus pattern (24 bp):
AAAAACGAGTGTGAAAAAGAAAAG
Found at i:50720709 original size:18 final size:18
Alignment explanation
Indices: 50720688--50720756 Score: 68
Period size: 18 Copynumber: 3.5 Consensus size: 18
50720678 AAAACGAGTG
50720688 TGAAAAAGAAAAGAAAAC
1 TGAAAAAGAAAAGAAAAC
50720706 TGAAAAAGAGAATA-AAAAC
1 TGAAAAAGA-AA-AGAAAAC
50720725 GAGTGTGAAAAAGAAAAGAAAAC
1 -----TGAAAAAGAAAAGAAAAC
50720748 TGAAAAAGA
1 TGAAAAAGA
50720757 GAGTGAGATT
Statistics
Matches: 43, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
18 18 0.42
19 7 0.16
20 1 0.02
22 1 0.02
23 7 0.16
24 9 0.21
ACGTcount: A:0.67, C:0.04, G:0.20, T:0.09
Consensus pattern (18 bp):
TGAAAAAGAAAAGAAAAC
Found at i:50720717 original size:42 final size:42
Alignment explanation
Indices: 50720671--50720758 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
50720661 AAATGAGATT
50720671 GAGAATAAAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAA
1 GAGAATAAAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAA
50720713 GAGAATAAAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAA
1 GAGAATAAAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAA
50720755 GAGA
1 GAGA
50720759 GTGAGATTGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.64, C:0.05, G:0.23, T:0.09
Consensus pattern (42 bp):
GAGAATAAAAACGAGTGTGAAAAAGAAAAGAAAACTGAAAAA
Found at i:50720811 original size:21 final size:18
Alignment explanation
Indices: 50720787--50720831 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
50720777 ACGAGAGTAC
50720787 AAAAGAAATGAGTGATGTGA
1 AAAAGAAA-GAG-GATGTGA
*
50720807 TAAAAGAAAGAGGATTTGA
1 -AAAAGAAAGAGGATGTGA
50720826 AAAAGA
1 AAAAGA
50720832 GTTTGAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 6 0.26
19 6 0.26
20 3 0.13
21 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.18
Consensus pattern (18 bp):
AAAAGAAAGAGGATGTGA
Found at i:50724764 original size:39 final size:40
Alignment explanation
Indices: 50724613--50724782 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
50724603 GACTAAAGAT
* * *
50724613 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
50724653 CCGAGGGCATTCATGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
50724693 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
50724733 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
50724772 CCGAAGGCATT
1 CCGAAGGCATT
50724783 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:50724802 original size:79 final size:80
Alignment explanation
Indices: 50724635--50724817 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
50724625 GTGCGAGATA
* * * *
50724635 CTAAATCCGGGTTAAGTCCCGAGGGCATTCATGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
50724700 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * ** * *
50724715 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
50724779 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
50724794 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
50724818 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:50739589 original size:40 final size:40
Alignment explanation
Indices: 50739534--50739767 Score: 351
Period size: 40 Copynumber: 5.8 Consensus size: 40
50739524 GCATTTGTAT
*
50739534 ATATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
50739574 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
50739614 ATATATCCGGGCTAAGACTCGCAGGCATTTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
50739654 GTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
50739694 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
50739734 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
50739768 TTGTGGTAAT
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:50757751 original size:56 final size:54
Alignment explanation
Indices: 50757609--50757751 Score: 136
Period size: 50 Copynumber: 2.7 Consensus size: 54
50757599 AGGAATGAGA
* * **
50757609 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGA-ATGGCATTGGCATTA-TGACGATATGAGAAC
*
50757665 TCCCACGTAAGACCATGTCTGGG-A---CA-TGGCATTA-GCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGAATGGCATTGGCATTATG-A-CGATATGAGAAC
* *
50757715 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGA-ATGGCATTGGCA
50757752 GTACAGGAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 36 0.51
51 2 0.03
52 1 0.01
54 1 0.01
55 2 0.03
56 27 0.38
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (54 bp):
TCCCATGTAAGACCATGTCTGGGAATGGCATTGGCATTATGACGATATGAGAAC
Found at i:50757787 original size:49 final size:49
Alignment explanation
Indices: 50757665--50757792 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 49
50757655 TTATGAGAGG
* * *
50757665 TCCCACGTAAGACCATGTCTGGGACATGGCATTAGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCA-CGACAGGAGAAC
* * * *
50757715 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA-GTACAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCACG-ACAGGAGAAC
50757763 ATCCCATGTAAGACCATGTCTGGGACATGG
1 -TCCCATGTAAGACCATGTCTGGGACATGG
50757793 ATTTGACATG
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
48 4 0.06
49 30 0.45
50 32 0.48
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCACGACAGGAGAAC
Found at i:50761432 original size:67 final size:67
Alignment explanation
Indices: 50761324--50761452 Score: 213
Period size: 67 Copynumber: 1.9 Consensus size: 67
50761314 TTTCCAATTC
* * * *
50761324 AGAGAGCACACTCCTGCGAACCTCATTTCTTATAGTGGGATTACCAATCCAGGCTAAATCCCCTG
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGATAAATCCCCTG
50761389 CA
66 CA
*
50761391 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGATAAATCCC
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGATAAATCCC
50761453 TTGTAATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.22
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGATAAATCCCCTG
CA
Found at i:50770978 original size:26 final size:25
Alignment explanation
Indices: 50770928--50770981 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
50770918 ACTAAAATAT
*
50770928 AATAAACAAGACATGTTAAAAACAC
1 AATAAACAAGACATATTAAAAACAC
* *
50770953 AATAAACTAAGACATATTTAAGACAC
1 AATAAAC-AAGACATATTAAAAACAC
50770979 AAT
1 AAT
50770982 TAAAATCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.20
Consensus pattern (25 bp):
AATAAACAAGACATATTAAAAACAC
Found at i:50771634 original size:3 final size:3
Alignment explanation
Indices: 50771626--50771650 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
50771616 TAAAGCCTAG
50771626 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
50771651 AGGACAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:50788454 original size:14 final size:15
Alignment explanation
Indices: 50788426--50788454 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50788416 CATGTTTTAA
50788426 GAAATATGCTTTTTG
1 GAAATATGCTTTTTG
50788441 GAAATATG-TTTTTG
1 GAAATATGCTTTTTG
50788455 TATGTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
GAAATATGCTTTTTG
Found at i:50792907 original size:15 final size:15
Alignment explanation
Indices: 50792889--50792924 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50792879 TAAAATTCAA
* *
50792889 AAATCCCAATTTGTG
1 AAATCCCAAATCGTG
50792904 AAATCCCAAATCGTG
1 AAATCCCAAATCGTG
50792919 AAATCC
1 AAATCC
50792925 TAAAAACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (15 bp):
AAATCCCAAATCGTG
Found at i:50793031 original size:15 final size:15
Alignment explanation
Indices: 50792987--50793034 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
50792977 ATCCTTAATC
50792987 CCTTATTCCCAAATCGT
1 CCTTATTCCCAAAT--T
* *
50793004 CGTTGAATCCCAAATT
1 CCTT-ATTCCCAAATT
50793020 CCTTATTCCCAAATT
1 CCTTATTCCCAAATT
50793035 GTGAAATCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 10 0.38
16 4 0.15
17 3 0.12
18 9 0.35
ACGTcount: A:0.27, C:0.31, G:0.06, T:0.35
Consensus pattern (15 bp):
CCTTATTCCCAAATT
Found at i:50793984 original size:51 final size:48
Alignment explanation
Indices: 50793908--50794007 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 48
50793898 ACCTTGATAT
50793908 ACATTATGGTTGGAACTAATGATCAATTTTGGTTGTTCTTTATGTAATTTA
1 ACATTATGGTTGGAACTAATGATCAATTTTGGTTG---TTTATGTAATTTA
* *
50793959 ACATTATGTTTGGAATTAATGATCAATTTTGGTTGTTTATGTAATTTA
1 ACATTATGGTTGGAACTAATGATCAATTTTGGTTGTTTATGTAATTTA
50794007 A
1 A
50794008 TTTAGCTTAG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 14 0.30
51 33 0.70
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.48
Consensus pattern (48 bp):
ACATTATGGTTGGAACTAATGATCAATTTTGGTTGTTTATGTAATTTA
Found at i:50799412 original size:35 final size:35
Alignment explanation
Indices: 50799373--50799457 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 35
50799363 GTTGTCGCTA
50799373 TGTCGCCCCATAGA-TCCTCTTGACTACCGTCGTGG
1 TGTCGCCCCATAGAGTCCTCTT-ACTACCGTCGTGG
* * * ** *
50799408 TGTCGACCCATAGAGTCTTCTTATTGTCGTCGTTG
1 TGTCGCCCCATAGAGTCCTCTTACTACCGTCGTGG
*
50799443 TGTCACCCCATAGAG
1 TGTCGCCCCATAGAG
50799458 CTTTTTATCA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 35 0.85
36 6 0.15
ACGTcount: A:0.16, C:0.29, G:0.22, T:0.32
Consensus pattern (35 bp):
TGTCGCCCCATAGAGTCCTCTTACTACCGTCGTGG
Found at i:50803177 original size:22 final size:23
Alignment explanation
Indices: 50803151--50803193 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
50803141 GAAAAATATT
50803151 AAATAT-ATATTTTTTATTTTTA
1 AAATATAATATTTTTTATTTTTA
50803173 AAATATAATATTTTTTATTTT
1 AAATATAATATTTTTTATTTT
50803194 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
AAATATAATATTTTTTATTTTTA
Found at i:50803280 original size:9 final size:9
Alignment explanation
Indices: 50803266--50803293 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
50803256 TTTTGTTACA
50803266 ACAATTAAT
1 ACAATTAAT
50803275 ACAATTAAT
1 ACAATTAAT
50803284 ACAATTAAT
1 ACAATTAAT
50803293 A
1 A
50803294 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:50803321 original size:68 final size:68
Alignment explanation
Indices: 50803236--50803454 Score: 307
Period size: 77 Copynumber: 3.1 Consensus size: 68
50803226 TCAAGTTTGT
*
50803236 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
50803301 AAA
66 AAA
*
50803304 TTTACTAATAAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATACAATTAA
1 TTTACTAATCAAATGTTAGATTTTATT---AC-----A-ACAATTAATACAATTAATACAATTAA
50803369 TAATTTGATAAA
57 TAATTTGATAAA
*
50803381 TTTACTAATCAAATGTTAAATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
50803444 AAT
66 AAA
50803447 TTTACTAA
1 TTTACTAA
50803455 CAATTAATTT
Statistics
Matches: 137, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
66 27 0.20
67 1 0.01
68 40 0.29
69 1 0.01
71 2 0.01
74 2 0.01
76 1 0.01
77 63 0.46
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:50803346 original size:9 final size:9
Alignment explanation
Indices: 50803334--50803370 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
50803324 TTTTATTACA
50803334 ACAATTAAT
1 ACAATTAAT
50803343 ACAATTAAT
1 ACAATTAAT
50803352 ACAATTAAT
1 ACAATTAAT
50803361 ACAATTAAT
1 ACAATTAAT
50803370 A
1 A
50803371 ATTTGATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:50803354 original size:77 final size:77
Alignment explanation
Indices: 50803266--50803436 Score: 310
Period size: 77 Copynumber: 2.2 Consensus size: 77
50803256 TTTTGTTACA
*
50803266 ACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATAAAATGTTAGATTTTATT
1 ACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATAAAATGTTAAATTTTATT
50803331 ACAACAATTAAT
66 ACAACAATTAAT
*
50803343 ACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAAATTTTATT
1 ACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATAAAATGTTAAATTTTATT
50803408 ACAACAATTAAT
66 ACAACAATTAAT
50803420 ACAATT-A-ACAATTAATA
1 ACAATTAATACAATTAATA
50803437 ATTTGATAAT
Statistics
Matches: 92, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
75 10 0.11
76 1 0.01
77 81 0.88
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.38
Consensus pattern (77 bp):
ACAATTAATACAATTAATACAATTAATAATTTGATAAATTTACTAATAAAATGTTAAATTTTATT
ACAACAATTAAT
Found at i:50803464 original size:16 final size:16
Alignment explanation
Indices: 50803443--50803486 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
50803433 AATAATTTGA
*
50803443 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
50803459 TAATTTTTTAATAACAAT
1 TAA--TTTTAATAACAAT
*
50803477 TAGTTTTAAT
1 TAATTTTAAT
50803487 TTTATGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:50803473 original size:18 final size:18
Alignment explanation
Indices: 50803446--50803483 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50803436 AATTTGATAA
*
50803446 TTTTACTAACAATTAATT
1 TTTTAATAACAATTAATT
*
50803464 TTTTAATAACAATTAGTT
1 TTTTAATAACAATTAATT
50803482 TT
1 TT
50803484 AATTTTATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTTAATAACAATTAATT
Found at i:50817225 original size:8 final size:8
Alignment explanation
Indices: 50817212--50817237 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50817202 CTTATTTCTT
50817212 AATAATTA
1 AATAATTA
50817220 AATAATTA
1 AATAATTA
50817228 AATAATTA
1 AATAATTA
50817236 AA
1 AA
50817238 AAACAGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AATAATTA
Found at i:50817607 original size:31 final size:30
Alignment explanation
Indices: 50817572--50817675 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 30
50817562 AATAATTCAA
*
50817572 CATTAAACTATTAATAAATTTACCTTTTTAT
1 CATTAAACTATTAATAAATTTA-CTTTTGAT
* * ***
50817603 CATTAAA-TTTTAAAAAATTATA-AAATGAT
1 CATTAAACTATTAATAAATT-TACTTTTGAT
*
50817632 CATTAAATTATTAATAAATTTACATTTTGAT
1 CATTAAACTATTAATAAATTTAC-TTTTGAT
50817663 CATTAAACTATTA
1 CATTAAACTATTA
50817676 GTAATTATCT
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
29 12 0.21
30 20 0.35
31 25 0.44
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (30 bp):
CATTAAACTATTAATAAATTTACTTTTGAT
Found at i:50818842 original size:17 final size:17
Alignment explanation
Indices: 50818815--50818859 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
50818805 AAAATGGAAA
*
50818815 ATTTT-TAATTTAGATT
1 ATTTTATAATTTAGAAT
*
50818831 ATTTTATAATTTATAAT
1 ATTTTATAATTTAGAAT
50818848 ATTTTA-AATTTA
1 ATTTTATAATTTA
50818860 TAATGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
ATTTTATAATTTAGAAT
Found at i:50818860 original size:16 final size:16
Alignment explanation
Indices: 50818815--50818863 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
50818805 AAAATGGAAA
* * *
50818815 ATTTTTAATTTAGATT
1 ATTTTAAATTTATAAT
50818831 ATTTTATAATTTATAAT
1 ATTTTA-AATTTATAAT
50818848 ATTTTAAATTTATAAT
1 ATTTTAAATTTATAAT
50818864 GATAAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
ATTTTAAATTTATAAT
Found at i:50820915 original size:20 final size:20
Alignment explanation
Indices: 50820890--50820937 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
50820880 TCAGAAATTA
50820890 TTTTCTATATTTTCCCATGT
1 TTTTCTATATTTTCCCATGT
* *
50820910 TTTTCTATATTTTTCCGTGT
1 TTTTCTATATTTTCCCATGT
50820930 TTTT-TATA
1 TTTTCTATA
50820938 GAAAATAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.65
Consensus pattern (20 bp):
TTTTCTATATTTTCCCATGT
Done.