Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 156 of 208
Found at i:50822303 original size:17 final size:18
Alignment explanation
Indices: 50822276--50822309 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
50822266 CAAATGTGTA
50822276 AACATAATTAAAAAAAAC
1 AACATAATTAAAAAAAAC
50822294 AACA-AATTAAAAAAAA
1 AACATAATTAAAAAAAA
50822310 TCCCAAAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (18 bp):
AACATAATTAAAAAAAAC
Found at i:50824197 original size:25 final size:25
Alignment explanation
Indices: 50824169--50824218 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
50824159 TAGCTACGTT
50824169 CCGACCCACAGCTCT-TGTGAGCATA
1 CCGACCCACAGCT-TATGTGAGCATA
*
50824194 CCGACTCACAGCTTATGTGAGCATA
1 CCGACCCACAGCTTATGTGAGCATA
50824219 TTGATTCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (25 bp):
CCGACCCACAGCTTATGTGAGCATA
Found at i:50824231 original size:25 final size:25
Alignment explanation
Indices: 50824178--50824270 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
50824168 TCCGACCCAC
* * * *
50824178 AGCTCTTGTGAGCATACCGACTCAC
1 AGCTCGTGTGAGCATACAGATTCAT
** **
50824203 AGCTTATGTGAGCATATTGATTCAT
1 AGCTCGTGTGAGCATACAGATTCAT
*
50824228 AGCTCGTGTGAGCATACAAATTCAT
1 AGCTCGTGTGAGCATACAGATTCAT
50824253 AGCTCGTGTGAGCATACA
1 AGCTCGTGTGAGCATACA
50824271 TGTACAAGAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACAGATTCAT
Found at i:50824571 original size:36 final size:35
Alignment explanation
Indices: 50824531--50824605 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 35
50824521 GCTTATGTTA
50824531 TATGTTTGTTTAGCTAACATGTTTGGTGTACATGCT
1 TATGTTTGTTTAGCTAACATGTTTGGTGTACATG-T
* * * *
50824567 TATGTTTTTTTGGTTAACATGTTTGGTGTATATGT
1 TATGTTTGTTTAGCTAACATGTTTGGTGTACATGT
50824602 TATG
1 TATG
50824606 GATACCATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
35 5 0.14
36 30 0.86
ACGTcount: A:0.19, C:0.07, G:0.23, T:0.52
Consensus pattern (35 bp):
TATGTTTGTTTAGCTAACATGTTTGGTGTACATGT
Found at i:50824822 original size:14 final size:14
Alignment explanation
Indices: 50824803--50824830 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50824793 TTAGATCAAG
50824803 ATTGGGTGAAAAAT
1 ATTGGGTGAAAAAT
50824817 ATTGGGTGAAAAAT
1 ATTGGGTGAAAAAT
50824831 TGAGGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (14 bp):
ATTGGGTGAAAAAT
Found at i:50825270 original size:25 final size:25
Alignment explanation
Indices: 50825209--50825275 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
50825199 TCCGACCTAT
*
50825209 AGCTCGTGTGAGCATACCAATTCAT
1 AGCTCGTGTGAGCATACCAATTCAC
* * * * *
50825234 AGCCCATTTGAGCATATCGATTCAC
1 AGCTCGTGTGAGCATACCAATTCAC
50825259 AGCTCGTGTGAGCATAC
1 AGCTCGTGTGAGCATAC
50825276 ATGTACAAGA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCAATTCAC
Found at i:50836962 original size:29 final size:29
Alignment explanation
Indices: 50836923--50837248 Score: 337
Period size: 29 Copynumber: 11.2 Consensus size: 29
50836913 GTATCGACGC
** *
50836923 CCATCGAATATGAAAAGGGATGGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGACAA
** *
50836952 TTATCGAATATGAAAAGAGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACAA
* * *
50836981 CCATCGCATATGAAAAGGGGTGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACAA
*
50837010 CCATCGAATATGAAAAGGGATGGTGAAAA
1 CCATCGAATATGAAAAGGGATGGTGACAA
50837039 CCATCGAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGACAA
****
50837068 CCATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTGACAA
* * * * **
50837097 CTACCGAATATGAAAAAGGATGTTGATGA
1 CCATCGAATATGAAAAGGGATGGTGACAA
* * * *
50837126 CAATCGATTATGAATAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACAA
* * * *
50837155 CCATCGATTATGAAAAGAGATGGCGACGA
1 CCATCGAATATGAAAAGGGATGGTGACAA
**
50837184 CCATCGAATATGAAAAGGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTGACAA
* * * *
50837213 CCATCGATTAAAGAAAAGGGATGGTTACGA
1 CCATCGAAT-ATGAAAAGGGATGGTGACAA
50837243 CCATCG
1 CCATCG
50837249 TTTAGCATAC
Statistics
Matches: 248, Mismatches: 48, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
29 225 0.91
30 23 0.09
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.21
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGACAA
Found at i:50839338 original size:40 final size:41
Alignment explanation
Indices: 50839278--50839358 Score: 130
Period size: 40 Copynumber: 2.0 Consensus size: 41
50839268 GTAACAGTTT
*
50839278 GGGCCTTAGCCCATCTCAGTA-CAGTAGCAAAT-ATGCAGTA
1 GGGCCTTAGCCCATCACAGTATCAGTAGC-AATCATGCAGTA
50839318 GGGCCTTAGCCCATCACAGTATCAGTAGCAATCATGCAGTA
1 GGGCCTTAGCCCATCACAGTATCAGTAGCAATCATGCAGTA
50839359 TTCAGTAACA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
40 23 0.61
41 15 0.39
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (41 bp):
GGGCCTTAGCCCATCACAGTATCAGTAGCAATCATGCAGTA
Found at i:50842345 original size:50 final size:49
Alignment explanation
Indices: 50842291--50842389 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 49
50842281 AGATGTTGGA
* *
50842291 AATGAATGATTTGAGTTATGTTTTTACGGTAATGCTCTGTAACCCTATTC
1 AATGAATGATTTGAGTTATGGTTTTACGGTAATACTCTGTAA-CCTATTC
* * * *
50842341 AATGAATGATTTGAGTTCTGGTTTTATGGTGATACTCTTTAACCTATTC
1 AATGAATGATTTGAGTTATGGTTTTACGGTAATACTCTGTAACCTATTC
50842390 TGGTGACGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 7 0.16
50 36 0.84
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.43
Consensus pattern (49 bp):
AATGAATGATTTGAGTTATGGTTTTACGGTAATACTCTGTAACCTATTC
Found at i:50845483 original size:41 final size:41
Alignment explanation
Indices: 50845367--50845484 Score: 121
Period size: 41 Copynumber: 2.9 Consensus size: 41
50845357 TGATTCGATA
* * * * *
50845367 CACCGGCTTTTAGCCTGCTAGACCTATAGTCC-GAAATGTTT
1 CACCGGCATTAAGCCTGCTAGACATATAG-CCTGAATTATTT
* * * * *
50845408 CACTGACATTAAGCCTGCTAGACGTAAAGTCTGAATTATTT
1 CACCGGCATTAAGCCTGCTAGACATATAGCCTGAATTATTT
*
50845449 CACCGGCATTAAGCCTGCTAGGCATATAGCCTGAAT
1 CACCGGCATTAAGCCTGCTAGACATATAGCCTGAAT
50845485 AACTGAGATG
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
40 1 0.02
41 60 0.98
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGCCTGAATTATTT
Found at i:50846103 original size:21 final size:21
Alignment explanation
Indices: 50846077--50846122 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
50846067 TCATAAAATC
*
50846077 AATTCAGCTTGTAGAACATAA
1 AATTCAGCTTATAGAACATAA
50846098 AATTCAGCTTATAGAACATAA
1 AATTCAGCTTATAGAACATAA
50846119 AATT
1 AATT
50846123 TGCTATTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (21 bp):
AATTCAGCTTATAGAACATAA
Found at i:50852670 original size:35 final size:35
Alignment explanation
Indices: 50852631--50852700 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
50852621 GCTCCATATA
*
50852631 TATAAATTTAACAACCGCATATCACC-ATGTACATT
1 TATAAATTCAACAACCGCATAT-ACCAATGTACATT
*
50852666 TATAAATTCAATAACCGCATATACCTAATGTACAT
1 TATAAATTCAACAACCGCATATACC-AATGTACAT
50852701 ATGCCTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.10
35 20 0.65
36 8 0.26
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (35 bp):
TATAAATTCAACAACCGCATATACCAATGTACATT
Found at i:50852979 original size:41 final size:41
Alignment explanation
Indices: 50852933--50853024 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
50852923 ACCGGATTTT
* *
50852933 AGCCTGCTAGACCTATAGTCCAAAATGTTTCACCGACATTA
1 AGCCTGCTAGACCTAAAGTCCAAAATATTTCACCGACATTA
* ** * *
50852974 AGCCTGCTAGACGTAAAGTCTGAATTATTTCACCGGCATTA
1 AGCCTGCTAGACCTAAAGTCCAAAATATTTCACCGACATTA
50853015 AGCCTGCTAG
1 AGCCTGCTAG
50853025 GCACATAGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (41 bp):
AGCCTGCTAGACCTAAAGTCCAAAATATTTCACCGACATTA
Found at i:50853038 original size:41 final size:41
Alignment explanation
Indices: 50852960--50853039 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
50852950 GTCCAAAATG
** *
50852960 TTTCACCGACATTAAGCCTGCTAGACGTAAAGTCTGAATTA
1 TTTCACCGACATTAAGCCTGCTAGACACAAAGCCTGAATTA
* * *
50853001 TTTCACCGGCATTAAGCCTGCTAGGCACATAGCCTGAAT
1 TTTCACCGACATTAAGCCTGCTAGACACAAAGCCTGAAT
50853040 AACTGAGATG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (41 bp):
TTTCACCGACATTAAGCCTGCTAGACACAAAGCCTGAATTA
Found at i:50853669 original size:21 final size:21
Alignment explanation
Indices: 50853643--50853686 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
50853633 TAAAATCAAC
*
50853643 TTCAGCTTGTAGAACATAAAA
1 TTCAGCTTATAGAACATAAAA
50853664 TTCAGCTTATAGAACATAAAA
1 TTCAGCTTATAGAACATAAAA
50853685 TT
1 TT
50853687 TGCTATTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (21 bp):
TTCAGCTTATAGAACATAAAA
Found at i:50859112 original size:29 final size:29
Alignment explanation
Indices: 50859070--50859127 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
50859060 ATTATTGGTC
50859070 CGACTTGTTCTCGTTGTTTAAAACTGTGA
1 CGACTTGTTCTCGTTGTTTAAAACTGTGA
50859099 CGACTTGTTCTCGTTGTTTAAAACTGTGA
1 CGACTTGTTCTCGTTGTTTAAAACTGTGA
50859128 TTATAGTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (29 bp):
CGACTTGTTCTCGTTGTTTAAAACTGTGA
Found at i:50860441 original size:32 final size:32
Alignment explanation
Indices: 50860217--50860451 Score: 231
Period size: 32 Copynumber: 7.4 Consensus size: 32
50860207 GAATGGCTAC
* * * *
50860217 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* *
50860248 ATGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * * *
50860280 CAGCCATCAGTAACGGTTACATAATCGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
**
50860312 AAGCCATCAGTGGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* *
50860344 CAGCCATCAGTAACAGTGAAATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * *
50860376 AAGCTATCAGTAACGGTGCTATGATTGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
*
50860408 AAGCCATCAGTAACAGT-ATTATGGTCGGCACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
**
50860440 AATTCATCAGTA
1 AAGCCATCAGTA
50860452 GCATTGCAAC
Statistics
Matches: 161, Mismatches: 41, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
31 9 0.06
32 152 0.94
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:50860448 original size:96 final size:96
Alignment explanation
Indices: 50860217--50860451 Score: 269
Period size: 96 Copynumber: 2.5 Consensus size: 96
50860207 GAATGGCTAC
* * * * * * * *
50860217 AAGCCATAAGT-ACAGTAATGTGATTGGCACAATGCCATCAGTAGCAGTGATATGATCGGCACAC
1 AAGCCATCAGTAACAGTGATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAA
50860281 AGCCATCAGTAACGGTTACATAATCGACACA
66 AGCCATCAGTAACGGTTACATAATCGACACA
** *
50860312 AAGCCATCAGTGGCAGTGATATGATCGGCACACAGCCATCAGTAACAGTGAAATGATCGGCACAA
1 AAGCCATCAGTAACAGTGATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAA
* * * *
50860377 AGCTATCAGTAACGG-TGCTATGATTGACACA
66 AGCCATCAGTAACGGTTAC-ATAATCGACACA
* **
50860408 AAGCCATCAGTAACAGT-ATTATGGTCGGCACAAATTCATCAGTA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACAAAGCCATCAGTA
50860452 GCATTGCAAC
Statistics
Matches: 117, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
95 13 0.11
96 104 0.89
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (96 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACAAAGCCATCAGTAACAGTGAAATGATCGGCACAA
AGCCATCAGTAACGGTTACATAATCGACACA
Found at i:50862462 original size:22 final size:22
Alignment explanation
Indices: 50862437--50862483 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
50862427 CTAAGAGTCG
* * *
50862437 TAAACAGGATAGCTATAAGCTA
1 TAAACAGAATAGCTACAAGCCA
*
50862459 TAAACAGAATGGCTACAAGCCA
1 TAAACAGAATAGCTACAAGCCA
50862481 TAA
1 TAA
50862484 GTACAGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (22 bp):
TAAACAGAATAGCTACAAGCCA
Found at i:50862594 original size:32 final size:31
Alignment explanation
Indices: 50862522--50862601 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
50862512 TCAATAGCAA
* *
50862522 TGATATGATCGGCACACAACCATCAGTAATGG
1 TGATATGATCGGTACAAAACCATCAGTAA-GG
* *
50862554 TAACATGATCGGTACAAAACCATCAGTGGAA-G
1 TGATATGATCGGTACAAAACCATCAGT--AAGG
50862586 TGATATGATCGGTACA
1 TGATATGATCGGTACA
50862602 TAGCCATCGA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 38 0.95
34 2 0.05
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (31 bp):
TGATATGATCGGTACAAAACCATCAGTAAGG
Found at i:50862620 original size:32 final size:32
Alignment explanation
Indices: 50862584--50862705 Score: 122
Period size: 32 Copynumber: 3.8 Consensus size: 32
50862574 CATCAGTGGA
*
50862584 AGTGATATGATCGGTACATAGCCATCGATAAC
1 AGTGATATGATCGGCACATAGCCATCGATAAC
* *
50862616 AGTGAAATGATCAGCACATAGCCATCGATAAC
1 AGTGATATGATCGGCACATAGCCATCGATAAC
* * * *
50862648 AGTAATGTGATCGACACAAAGCCATC-AGTAAC
1 AGTGATATGATCGGCACATAGCCATCGA-TAAC
* * *
50862680 GGT-ATTATGAGCGGTACATAGCCATC
1 AGTGA-TATGATCGGCACATAGCCATC
50862706 AGTAACGGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
31 2 0.03
32 71 0.97
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (32 bp):
AGTGATATGATCGGCACATAGCCATCGATAAC
Found at i:50862738 original size:32 final size:32
Alignment explanation
Indices: 50862662--50862741 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
50862652 ATGTGATCGA
* *
50862662 CACAAAGCCATCAGTAACGGTATTATGAGCGG
1 CACAAAGCCATCAGTAACGGTACTATGAACGG
* *
50862694 TACATAGCCATCAGTAACGGTACTAT-AACTGG
1 CACAAAGCCATCAGTAACGGTACTATGAAC-GG
*
50862726 CACAAAGGCATCAGTA
1 CACAAAGCCATCAGTA
50862742 GTATCACAGC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 2 0.05
32 38 0.95
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (32 bp):
CACAAAGCCATCAGTAACGGTACTATGAACGG
Found at i:50862777 original size:26 final size:26
Alignment explanation
Indices: 50862741--50862797 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
50862731 AGGCATCAGT
50862741 AGTATCACAGCAAAGCTGCCAGTAAC
1 AGTATCACAGCAAAGCTGCCAGTAAC
* *
50862767 AGTATCGCAGCAAAGCTGCCAGTAAT
1 AGTATCACAGCAAAGCTGCCAGTAAC
50862793 AGTAT
1 AGTAT
50862798 ATGTGGCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (26 bp):
AGTATCACAGCAAAGCTGCCAGTAAC
Found at i:50863049 original size:26 final size:27
Alignment explanation
Indices: 50863031--50863121 Score: 74
Period size: 27 Copynumber: 3.4 Consensus size: 27
50863021 TTACCTACCA
*
50863031 GGGCATTACGGCCATTTTACCTTATAG
1 GGGCATTACGGCCATTTTACCTTACAG
* * * * *
50863058 GGGTATTACGGTCATTTTACCCTATAT
1 GGGCATTACGGCCATTTTACCTTACAG
* *** *
50863085 GAGCATTACGATTATTTTACCCTACAG
1 GGGCATTACGGCCATTTTACCTTACAG
*
50863112 GGGTATTACG
1 GGGCATTACG
50863122 ATCCATTTAC
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGCATTACGGCCATTTTACCTTACAG
Found at i:50863073 original size:27 final size:27
Alignment explanation
Indices: 50863043--50863215 Score: 134
Period size: 27 Copynumber: 6.4 Consensus size: 27
50863033 GCATTACGGC
* *
50863043 CATTTTACCTTATAGGGGTATTACGGT
1 CATTTTACCCTATAGGGGTATTACGAT
* * *
50863070 CATTTTACCCTATATGAGCATTACGAT
1 CATTTTACCCTATAGGGGTATTACGAT
* *
50863097 TATTTTACCCTACAGGGGTATTACGAT
1 CATTTTACCCTATAGGGGTATTACGAT
* * *
50863124 CCA-TTTACCCCT-TCAAGGGCATTACTAT
1 -CATTTTA-CCCTAT-AGGGGTATTACGAT
* * *
50863152 TATTTTACCCTACAGGGGTATTACGGT
1 CATTTTACCCTATAGGGGTATTACGAT
* * * **
50863179 TAGTTTACCCTATGGGGGTATTTTGAT
1 CATTTTACCCTATAGGGGTATTACGAT
*
50863206 CAATTTACCC
1 CATTTTACCC
50863216 ATCGAGGGTT
Statistics
Matches: 112, Mismatches: 29, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
27 92 0.82
28 20 0.18
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (27 bp):
CATTTTACCCTATAGGGGTATTACGAT
Found at i:50863154 original size:55 final size:54
Alignment explanation
Indices: 50863044--50863191 Score: 174
Period size: 55 Copynumber: 2.7 Consensus size: 54
50863034 CATTACGGCC
* * * *
50863044 ATTTTACCTTATAGGGGTATTACGGTCATTTTACCCTATATGAGCATTACGATT
1 ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAAGAGCATTACGATT
* *
50863098 ATTTTACCCTACAGGGGTATTACGATCCA-TTTACCCCT-TCAAGGGCATTACTATT
1 ATTTTACCCTACAGGGGTATTACGAT-CATTTTA-CCCTAT-AAGAGCATTACGATT
* * *
50863153 ATTTTACCCTACAGGGGTATTACGGTTAGTTTACCCTAT
1 ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTAT
50863192 GGGGGTATTT
Statistics
Matches: 81, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
54 33 0.41
55 48 0.59
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (54 bp):
ATTTTACCCTACAGGGGTATTACGATCATTTTACCCTATAAGAGCATTACGATT
Found at i:50864266 original size:75 final size:75
Alignment explanation
Indices: 50864170--50864330 Score: 254
Period size: 75 Copynumber: 2.1 Consensus size: 75
50864160 ATACCTTGAA
*
50864170 AGCCTCGCCGATCTCCCCCATTTAGAACAAGGAACAAATGAGAT-G-TGTGTGATATATATAGCT
1 AGCCTCGCCAATCTCCCCCATTTAGAACAAGGAACAAATGAGATGGATGTGTG--ATATATAGCT
*
50864233 CTCCACAACAAC
64 CTCCACAAAAAC
50864245 AGCCTCGCCAATCTCCCCCATTTAGAACAAGGAACAAATGAGATGGATGTGTGATATATAGCTCT
1 AGCCTCGCCAATCTCCCCCATTTAGAACAAGGAACAAATGAGATGGATGTGTGATATATAGCTCT
50864310 CCACAAAAAC
66 CCACAAAAAC
* *
50864320 AACCTCCCCAA
1 AGCCTCGCCAA
50864331 ATCCCAATTC
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
75 73 0.91
76 1 0.01
77 6 0.08
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (75 bp):
AGCCTCGCCAATCTCCCCCATTTAGAACAAGGAACAAATGAGATGGATGTGTGATATATAGCTCT
CCACAAAAAC
Found at i:50868844 original size:23 final size:23
Alignment explanation
Indices: 50868751--50868896 Score: 143
Period size: 23 Copynumber: 6.3 Consensus size: 23
50868741 CTCAAGAACA
* * *
50868751 TTACAGAATACGCCACACAGGCA
1 TTACAGAATATGCCACAAAGGCT
*
50868774 TTAAAGAATATGCCACAAAGGCT
1 TTACAGAATATGCCACAAAGGCT
*
50868797 TTACAGAACATGCCACAAAGGCT
1 TTACAGAATATGCCACAAAGGCT
**
50868820 TTACAGAATATGCCACAAACACT
1 TTACAGAATATGCCACAAAGGCT
* ** *
50868843 TTATAGAATATGTTACACAA-GAT
1 TTACAGAATATGCCACA-AAGGCT
**
50868866 TTATCA-AATATGCCACAAAGTAT
1 TTA-CAGAATATGCCACAAAGGCT
50868889 TTACAGAA
1 TTACAGAA
50868897 CATTACATGT
Statistics
Matches: 101, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
22 4 0.04
23 94 0.93
24 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (23 bp):
TTACAGAATATGCCACAAAGGCT
Found at i:50873974 original size:79 final size:81
Alignment explanation
Indices: 50873837--50874020 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
50873827 ATGTGCATGC
* *
50873837 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
50873901 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * **
50873917 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAA-TTACTAAATCCGGGTTAAG-TCCGGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACCAAATCCGGACTAAGATCC-GAAGGCATT
*
50873979 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
50873996 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50874021 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:50874027 original size:40 final size:39
Alignment explanation
Indices: 50873837--50874020 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
50873827 ATGTGCATGC
* * * *
50873837 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
50873877 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
50873917 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50873955 TCCGGGTTAAGTCCGGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50873996 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50874021 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50874042 original size:79 final size:78
Alignment explanation
Indices: 50873837--50874053 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 78
50873827 ATGTGCATGC
** * * *
50873837 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAAGT-ACTATATCCGG-TTAAGATCCGAAGGCATTT
*
50873901 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** * *
50873917 CCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGTTAAG-TCCGGAAGGCATTTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAAGTACTATATCC-GGTTAAGATCC-GAAGGCATTTG
*
50873981 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
*
50873996 CCGGGCTATGTCCCGAAGGCATTTGAACG-AGTAGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAAGTA-CTATATCCGGTTAAGA-TCCGAAGG
50874054 TACGTGATTT
Statistics
Matches: 117, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 5 0.04
79 64 0.55
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAAGTACTATATCCGGTTAAGATCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:50877642 original size:23 final size:23
Alignment explanation
Indices: 50877615--50877699 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
50877605 TTTTGTGATA
50877615 CCTTTGTGGCATATTCTGCAATTG
1 CCTTTGTGGCATATTCTGCAA-TG
* * * **
50877639 -CTTTTTAGCGTATTCTGTGATG
1 CCTTTGTGGCATATTCTGCAATG
* **
50877661 CCTTTGTGGCATATTTTGTGATG
1 CCTTTGTGGCATATTCTGCAATG
* *
50877684 CCTTTTTGTCATATTC
1 CCTTTGTGGCATATTC
50877700 CTGTAATGTT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
22 2 0.04
23 46 0.96
ACGTcount: A:0.14, C:0.18, G:0.20, T:0.48
Consensus pattern (23 bp):
CCTTTGTGGCATATTCTGCAATG
Found at i:50884180 original size:13 final size:13
Alignment explanation
Indices: 50884162--50884188 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50884152 TTACCTGAAC
50884162 TTTCATGTAACAT
1 TTTCATGTAACAT
50884175 TTTCATGTAACAT
1 TTTCATGTAACAT
50884188 T
1 T
50884189 GTCTATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (13 bp):
TTTCATGTAACAT
Found at i:50889525 original size:12 final size:12
Alignment explanation
Indices: 50889508--50889548 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
50889498 GATTGACCCC
50889508 GGCATCGATATT
1 GGCATCGATATT
50889520 GGCATCGATATT
1 GGCATCGATATT
* *
50889532 GGCATCTATAAT
1 GGCATCGATATT
50889544 GGCAT
1 GGCAT
50889549 TAGTGTCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (12 bp):
GGCATCGATATT
Found at i:50899237 original size:31 final size:31
Alignment explanation
Indices: 50899199--50899260 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
50899189 TGTTCAGCCA
50899199 CTATTTTTCTTATTCTTTTCCCTCTTTTCCT
1 CTATTTTTCTTATTCTTTTCCCTCTTTTCCT
50899230 CTATTTTTCTTATTCTTTTCCCTCTTTTCCT
1 CTATTTTTCTTATTCTTTTCCCTCTTTTCCT
50899261 TTCTTTCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (31 bp):
CTATTTTTCTTATTCTTTTCCCTCTTTTCCT
Found at i:50906574 original size:5 final size:5
Alignment explanation
Indices: 50906559--50906599 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
50906549 CTACGATTAT
50906559 TTTTAA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
50906600 ACCGTACAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 31 0.89
6 4 0.11
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:50911126 original size:38 final size:38
Alignment explanation
Indices: 50911072--50911168 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 38
50911062 AACCAACCAA
* * *
50911072 AACACGCCAGCTTGCTCGTAAGAGTTATTCCATCCGAT
1 AACACGCCAGTTTGCTCATAAGAGTTATTACATCCGAT
* *
50911110 AATACGCCAGTTTGCTCATAAGAGTTATTACATCTGAT
1 AACACGCCAGTTTGCTCATAAGAGTTATTACATCCGAT
* *
50911148 AACATGCCACTTTGCTCATAA
1 AACACGCCAGTTTGCTCATAA
50911169 CAACTATAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
AACACGCCAGTTTGCTCATAAGAGTTATTACATCCGAT
Found at i:50922555 original size:22 final size:23
Alignment explanation
Indices: 50922496--50922555 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
50922486 AAATTGTAAT
*
50922496 AATAT-AAGAATATATGTATGTG
1 AATATAAAGAATATATGTATGAG
* *
50922518 AATTATAAA-AAAATAT-TTTGAG
1 AA-TATAAAGAATATATGTATGAG
50922540 AATATAAAGAATATAT
1 AATATAAAGAATATAT
50922556 ATAAATATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 6 0.19
22 14 0.45
23 9 0.29
24 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (23 bp):
AATATAAAGAATATATGTATGAG
Found at i:50924577 original size:82 final size:82
Alignment explanation
Indices: 50924489--50926040 Score: 2550
Period size: 82 Copynumber: 18.9 Consensus size: 82
50924479 TGTGTTTTTA
* * *
50924489 GTCTGCTCCACTACTGCTTAGGGAGATAAGA-TTGGATGTGATCTACTCCACTACTGCTTAGGG-
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTT-GATGCGATCTGCTCCACTACTGCTTAGGGA
50924552 GAATAAGATCTGTGGTTCT
65 G-ATAAGATCTGTGGTTCT
*
50924571 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50924636 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * *
50924653 GTCTGCTCTACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTATGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50924718 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
*
50924735 GTCTGCTCCACTATTGCTTAGGGAGGTAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50924800 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * *
50924817 GTTTGCTCTACTATTGCTTAGGGAGGTAAGACTTGATGCGATCTGCTCCACTACTACTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50924882 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* *
50924899 GTTTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50924964 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * * **
50924981 GTCTGCTGCACTATTGCTTAAGGAGATAAGACTTGATGCGATCTGCTCAACTACTACTTAGAAAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925046 ATAAGATCTATGGTTCT
66 ATAAGATCTGTGGTTCT
*
50925063 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTACTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50925128 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* *
50925145 GTCTACTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTACTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925210 ATAAGATCTATGGTTCT
66 ATAAGATCTGTGGTTCT
*
50925227 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50925292 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
*
50925309 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50925374 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * * *
50925391 GTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTACTTAAGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925456 ATAAGATGTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * *
50925473 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCGCTACTGTTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925538 ATAAAATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* *
50925555 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTACTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925620 ATAAGATCTATGGTTCT
66 ATAAGATCTGTGGTTCT
*
50925637 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50925702 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
*
50925719 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTATTGCTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50925784 ATAAGATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * * *
50925801 GTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTACTTAAGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925866 ATAAGATGTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * *
50925883 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCGCTACTGTTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
*
50925948 ATAAAATCTGTGGTTCT
66 ATAAGATCTGTGGTTCT
* * * *
50925965 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTACTCCACTACTACTTAGGGAG
1 GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
50926030 ATAAGATCTGT
66 ATAAGATCTGT
50926041 AATCTTCACT
Statistics
Matches: 1387, Mismatches: 81, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
82 1384 1.00
83 3 0.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (82 bp):
GTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAG
ATAAGATCTGTGGTTCT
Found at i:50926220 original size:50 final size:50
Alignment explanation
Indices: 50926143--50926591 Score: 201
Period size: 50 Copynumber: 9.0 Consensus size: 50
50926133 CAACCTTTTA
** * *
50926143 AATTGCAATGTCAGGGAAGCAAAATTCGCCGTCGTAGCTTCAATCTGCTC
1 AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
* * * ** ** *
50926193 CATTGCACTGCCA-AGGAAATAAGATTCGCCGTTGCG-A-CTTCAATCTTTTA
1 AATTGCAATACCAGA-GAAGCAAGATTCGCCG-T-CGTAGCTTCAATCTGCTC
* *
50926243 AATTGCAATATCATG-GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTC
1 AATTGCAATACCA-GAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
* * * * ** * * ** *
50926293 TACTGTACTACCAGAGAAGTGAGATTCGCCGTTGTGGCTTCAAT-TTTTT
1 AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
** * * *
50926342 AATTGCAATGTCGGCGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTC
1 AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
* * * * * * * ** * ** *
50926392 CACTGC-ATCATCAGAAAAGTAAGATTCGCCATTGCGGCTTCAATATTTTT
1 AATTGCAAT-ACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
** * * * *
50926442 AATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
1 AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
* * * * * * ** * ** *
50926492 CACTGCATTACTAG-GAAAGTAAGATTCGCCGTTGCGGCTTTAATCTTTTT
1 AATTGCAATACCAGAG-AAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
** * * *
50926542 AATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTC
1 AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
50926592 TACTGCATCA
Statistics
Matches: 275, Mismatches: 111, Indels: 26
0.67 0.27 0.06
Matches are distributed among these distances:
48 2 0.01
49 39 0.14
50 227 0.83
51 5 0.02
52 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (50 bp):
AATTGCAATACCAGAGAAGCAAGATTCGCCGTCGTAGCTTCAATCTGCTC
Found at i:50926483 original size:199 final size:200
Alignment explanation
Indices: 50926131--50926601 Score: 648
Period size: 199 Copynumber: 2.4 Consensus size: 200
50926121 ATCCGCCATT
* * * * *
50926131 TTCAACCTTTTAAATTGCAATGTCAGGGAAGCAAAATTCGCCGTCGTAGCTTCAATCTGCTCCAT
1 TTCAATCTTTTTAATTGCAATGTC-GGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
* * * *
50926196 TGCA-C-TGCCAAGGAAATAAGATTCGCCGTTGCGACTTCAATCTTTTAAATTGCAATATCATGG
65 TGCATCAT-CCAAGAAAATAAGATTCGCCATTGCGACTTCAATATTTTAAATTGCAATATCAGGG
* * * *
50926259 AAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTACTGTACTACCA-GAGAAGTGAGATTCGCC
129 AAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACTACCAGGA-AAGTAAGATTCGCC
*
50926323 GTTGTGGC
193 GTTGCGGC
50926331 TTCAAT-TTTTTAATTGCAATGTCGGCGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
1 TTCAATCTTTTTAATTGCAATGTCGG-GAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
* * * *
50926395 TGCATCAT-C-AGAAAAGTAAGATTCGCCATTGCGGCTTCAATATTTTTAATTGCAATGTCGGGG
65 TGCATCATCCAAGAAAA-TAAGATTCGCCATTGCGACTTCAATATTTTAAATTGCAATATCAGGG
* *
50926458 AAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATTACTAGGAAAGTAAGATTCGCCG
129 AAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACTACCAGGAAAGTAAGATTCGCCG
50926523 TTGCGGC
194 TTGCGGC
* *
50926530 TTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTAC
1 TTCAATCTTTTTAATTGCAATGTC-GGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
50926595 TGCATCA
65 TGCATCA
50926602 CTAGGAAGAT
Statistics
Matches: 242, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
198 7 0.03
199 163 0.67
200 69 0.29
201 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (200 bp):
TTCAATCTTTTTAATTGCAATGTCGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACT
GCATCATCCAAGAAAATAAGATTCGCCATTGCGACTTCAATATTTTAAATTGCAATATCAGGGAA
GCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCACTACCAGGAAAGTAAGATTCGCCGTT
GCGGC
Found at i:50926599 original size:100 final size:100
Alignment explanation
Indices: 50926131--50926608 Score: 644
Period size: 100 Copynumber: 4.8 Consensus size: 100
50926121 ATCCGCCATT
* * * * * *
50926131 TTCAACCTTTTAAATTGCAATGTCAGGGAAGCAAAATTCGCCGTCGTAGCTTCAATCTGCTCCAT
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
* *
50926196 TGCACTGC-CAAGGAAA-TAAGATTCGCCGTTGCGAC
66 TGCA-T-CACTAGGAAAGTAAGATTCGCCGTTGCGGC
* * ** *
50926231 TTCAATCTTTTAAATTGCAATATCATGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
* * * *
50926296 TGTA-CTACCA-GAGAAGTGAGATTCGCCGTTGTGGC
66 TGCATC-ACTAGGA-AAGTAAGATTCGCCGTTGCGGC
*
50926331 TTCAAT-TTTTTAATTGCAATGTCGGCGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
* *
50926395 TGCATCA-TCAGAAAAGTAAGATTCGCCATTGCGGC
66 TGCATCACT-AGGAAAGTAAGATTCGCCGTTGCGGC
* *
50926430 TTCAATATTTTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
*
50926495 TGCATTACTAGGAAAGTAAGATTCGCCGTTGCGGC
66 TGCATCACTAGGAAAGTAAGATTCGCCGTTGCGGC
* *
50926530 TTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCTAC
1 TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
50926595 TGCATCACTAGGAA
66 TGCATCACTAGGAA
50926609 GATAAGGTTT
Statistics
Matches: 335, Mismatches: 34, Indels: 18
0.87 0.09 0.05
Matches are distributed among these distances:
97 1 0.00
98 2 0.01
99 86 0.26
100 245 0.73
101 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCAC
TGCATCACTAGGAAAGTAAGATTCGCCGTTGCGGC
Found at i:50926722 original size:44 final size:44
Alignment explanation
Indices: 50926653--50927108 Score: 272
Period size: 44 Copynumber: 10.1 Consensus size: 44
50926643 TCAGAGAGAT
* * * *
50926653 AAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGAC
*
50926698 AAGATCTGC-ATCTTCGATCCACTTCCTACCAATTTCCTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCG----A--T-CTA-C---TTCCCACCAATATAGGAAGAC
* * * ***
50926752 AGGA-CTTGCTATCTTCGATCTACTTCACGCCAATACCTGAAGAC
1 AAGATC-TGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
** * * * * * * *
50926796 AAGATCTAATTTATTTGATCTACTTTGCCACTAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTAC-TTCCCACCAATATAGGAAGAC
* * *
50926841 AAGATCTGC-ATCTTCGATCCACTTCCTACCACTATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
* * * * * * *
50926884 AGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
* * * * *
50926928 AAGATCTTCTTTCTTCGATCCACTTCCTACCACTATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
* * * * * * *
50926972 AAGACCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAT
1 AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
* * *
50927016 AAGATCTTCTTTCTTCGATCTACTTCCTACCAATATAGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
* * * * ** *
50927060 AGGACCTACTATCTTC-AGTCCACTTCGCTGCCAATACAGGAAGAC
1 AAGATCTGCTATCTTCGA-TCTACTTC-CCACCAATATAGGAAGAC
50927105 AAGA
1 AAGA
50927109 CTTGATGTGA
Statistics
Matches: 304, Mismatches: 89, Indels: 36
0.71 0.21 0.08
Matches are distributed among these distances:
43 24 0.08
44 188 0.62
45 48 0.16
47 1 0.00
48 4 0.01
49 1 0.00
50 1 0.00
51 4 0.01
52 1 0.00
53 1 0.00
54 21 0.07
55 10 0.03
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
AAGATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGAC
Found at i:50926943 original size:88 final size:88
Alignment explanation
Indices: 50926851--50927108 Score: 410
Period size: 88 Copynumber: 2.9 Consensus size: 88
50926841 AAGATCTGCA
50926851 TCTTCGATCCACTTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCA
1 TCTTCGATCCACTTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCA
50926916 ATACATGAAGATAAGATCTTCTT
66 ATACATGAAGATAAGATCTTCTT
* *
50926939 TCTTCGATCCACTTCCTACCACTATAGGAAGACAAGACCTGCTATCTTTGATCTACTTCACGCCA
1 TCTTCGATCCACTTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCA
50927004 ATACATGAAGATAAGATCTTCTT
66 ATACATGAAGATAAGATCTTCTT
* * * * *
50927027 TCTTCGATCTACTTCCTACCAATATAGGAAGACAGGACCTACTATCTTC-AGTCCACTTCGCTGC
1 TCTTCGATCCACTTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGA-TCTACTTCAC-GC
* *
50927091 CAATACAGGAAGACAAGA
64 CAATACATGAAGATAAGA
50927109 CTTGATGTGA
Statistics
Matches: 157, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
87 1 0.01
88 138 0.88
89 18 0.11
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (88 bp):
TCTTCGATCCACTTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCA
ATACATGAAGATAAGATCTTCTT
Found at i:50926986 original size:132 final size:131
Alignment explanation
Indices: 50926731--50927041 Score: 367
Period size: 132 Copynumber: 2.4 Consensus size: 131
50926721 TCCTACCAAT
* *
50926731 TTCCTACCAATATAGGAAGACAGGACTTGCTATCTTCGATCTACTTCACGCCAATACCTGAAGAC
1 TTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * *
50926796 AAGATCTAATTTATTTGATCTACTTTGCCACTAGTATGGGAAGACAAGATCTGCATCTTCGATCC
66 AAGATCTAATTTATTCGATCCACTTTACCACTAGTA-GGGAAGACAAGACCTGCATCTTCGATCC
50926861 AC
130 AC
* *
50926863 TTCCTACCACTATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAT
1 TTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
** * *
50926928 AAGATCTTCTTTCTTCGATCCACTTCCTACCACTA-TA-GGAAGACAAGACCTGCTATCTTTGAT
66 AAGATCTAATTTATTCGATCCACTT--TACCACTAGTAGGGAAGACAAGACCTGC-ATCTTCGAT
*
50926991 CTAC
128 CCAC
* * * * * * * *
50926995 TTCAC-GCCAATACATGAAGATAAGATCTTCTTTCTTCGATCTACTTC
1 TTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTC
50927042 CTACCAATAT
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
131 15 0.10
132 128 0.84
133 3 0.02
134 7 0.05
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (131 bp):
TTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
AAGATCTAATTTATTCGATCCACTTTACCACTAGTAGGGAAGACAAGACCTGCATCTTCGATCCA
C
Found at i:50927804 original size:108 final size:108
Alignment explanation
Indices: 50927615--50927810 Score: 286
Period size: 108 Copynumber: 1.8 Consensus size: 108
50927605 GAAAAATGCT
* * *
50927615 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCACAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGAACAAAATGAAATTTTGTTAAGAGCAAAGCTCTAAACAAACAAAT
*
50927680 CAATCAAGGTAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
* * * **
50927723 TGAAAAAGATTATCACAATGAATAAGATGGAAA-TTTGTTAAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATGAACAAAAT-GAAATTTTGTTAAGAGCAAAGCTCTAAACAAACAAA
*
50927787 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGATAGCAAATTTTGCT
50927811 AGAATACAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 73 0.95
109 4 0.05
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGAACAAAATGAAATTTTGTTAAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:50928637 original size:17 final size:18
Alignment explanation
Indices: 50928606--50928643 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
50928596 CCGGTAGAGG
*
50928606 TTTTTCTTTTATTTGGTT
1 TTTTTCTTTTATTTGCTT
*
50928624 TTTTTGTTTT-TTTGCTT
1 TTTTTCTTTTATTTGCTT
50928641 TTT
1 TTT
50928644 ATTTTCTCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.03, C:0.05, G:0.11, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTATTTGCTT
Found at i:50928667 original size:11 final size:11
Alignment explanation
Indices: 50928630--50928678 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
50928620 GGTTTTTTTG
*
50928630 TTTTTTTGCTT
1 TTTTTTTACTT
*
50928641 TTTATTTT-CTCG
1 TTT-TTTTACT-T
50928653 TTTTTTTACTT
1 TTTTTTTACTT
50928664 TTTTTTTACTT
1 TTTTTTTACTT
50928675 TTTT
1 TTTT
50928679 GCCCCCACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 24 0.73
12 9 0.27
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.80
Consensus pattern (11 bp):
TTTTTTTACTT
Found at i:50930051 original size:62 final size:62
Alignment explanation
Indices: 50929949--50930073 Score: 214
Period size: 62 Copynumber: 2.0 Consensus size: 62
50929939 CTAAACTCGA
*
50929949 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAAAGTTAATGCATGAATG
* * *
50930011 CGTATTTTTGGATTTTAGGAAATTTATTTTATGCAATGAAATGTAAAGTTGATGCATGAATG
1 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAAAGTTAATGCATGAATG
50930073 C
1 C
50930074 AAAAAAAAGA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAAAGTTAATGCATGAATG
Found at i:50932165 original size:22 final size:23
Alignment explanation
Indices: 50932105--50932165 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
50932095 AAATTGTAAT
*
50932105 AATAT-AAGAATATATGTATGTG
1 AATATAAAGAATATATGTATGAG
* * *
50932127 AATTATAAAAAAAATAT-TTTGAG
1 AA-TATAAAGAATATATGTATGAG
50932150 AATATAAAGAATATAT
1 AATATAAAGAATATAT
50932166 ATAAGTATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 14 0.45
23 9 0.29
24 8 0.26
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (23 bp):
AATATAAAGAATATATGTATGAG
Found at i:50932320 original size:7 final size:7
Alignment explanation
Indices: 50932302--50932338 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
50932292 ATATCTATGT
50932302 ATATAAAA
1 ATAT-AAA
*
50932310 ATATGAA
1 ATATAAA
50932317 ATATAAA
1 ATATAAA
50932324 ATATAAA
1 ATATAAA
50932331 ATATAAA
1 ATATAAA
50932338 A
1 A
50932339 AGTATATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 23 0.85
8 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
ATATAAA
Found at i:50934422 original size:30 final size:30
Alignment explanation
Indices: 50934328--50934423 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
50934318 GTACACCAAT
*
50934328 AGTCACTCAAA-TTTAATTAAAATAATAAAAT-
1 AGTCACT-AAACTTTAA-AAAAATAAT-AAATC
* * * * *
50934359 AGTTACTAAACTTT-GAAAAGTTATAACTC
1 AGTCACTAAACTTTAAAAAAATAATAAATC
50934388 AGTCACTAAACTTTAAAAAAATAATAAATC
1 AGTCACTAAACTTTAAAAAAATAATAAATC
50934418 AGTCAC
1 AGTCAC
50934424 CCGTAACCAT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
28 3 0.06
29 19 0.37
30 20 0.39
31 9 0.18
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (30 bp):
AGTCACTAAACTTTAAAAAAATAATAAATC
Found at i:50939684 original size:50 final size:50
Alignment explanation
Indices: 50939609--50939710 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
50939599 CTTACATCTT
50939609 ACAAGTTTTACTTCTATCAACTATGCTTAAACTTCAGTCATGGTCTCAAA
1 ACAAGTTTTACTTCTATCAACTATGCTTAAACTTCAGTCATGGTCTCAAA
*
50939659 ACAAGTTTTACTTCTATCAACTATGCTTAAACTTCAGTCATGGTGTCAAA
1 ACAAGTTTTACTTCTATCAACTATGCTTAAACTTCAGTCATGGTCTCAAA
50939709 AC
1 AC
50939711 TATACCGATC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (50 bp):
ACAAGTTTTACTTCTATCAACTATGCTTAAACTTCAGTCATGGTCTCAAA
Found at i:50942139 original size:29 final size:29
Alignment explanation
Indices: 50942097--50942154 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
50942087 AATGGCAATG
*
50942097 GCAACACTGATGGTCATTGTAGAAAACAA
1 GCAACACTAATGGTCATTGTAGAAAACAA
*
50942126 GCAATACTAATGGTCATTGTAGAAAACAA
1 GCAACACTAATGGTCATTGTAGAAAACAA
50942155 ATCATTTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (29 bp):
GCAACACTAATGGTCATTGTAGAAAACAA
Found at i:50950630 original size:13 final size:14
Alignment explanation
Indices: 50950612--50950645 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
50950602 ATTAAAAATG
*
50950612 ATGAAATGA-AAAA
1 ATGAAAAGATAAAA
50950625 ATGAAAAGATAAAA
1 ATGAAAAGATAAAA
50950639 ATGAAAA
1 ATGAAAA
50950646 ATGGAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
ATGAAAAGATAAAA
Found at i:50952005 original size:50 final size:50
Alignment explanation
Indices: 50951935--50952220 Score: 270
Period size: 50 Copynumber: 5.7 Consensus size: 50
50951925 TCCTTAGCAG
* * * *
50951935 TGCAATGAAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATAT
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGATAT
* *** * * *
50951985 TGTAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTT-CCTTAGCAG
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGA-TAT
* ** * * *
50952035 TGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATAT
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGATAT
* *** * * *
50952085 TGCAATTAAAAAGATTGAAGCCACAACGGTGGATCTTACTT-CCTTAGCAG
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGA-TAT
* ** * * *
50952135 TGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATAT
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGATAT
50952185 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
1 TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
50952221 TCCCTCCTTA
Statistics
Matches: 176, Mismatches: 56, Indels: 8
0.73 0.23 0.03
Matches are distributed among these distances:
49 8 0.05
50 160 0.91
51 8 0.05
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (50 bp):
TGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTGGTTTCCCTGATAT
Found at i:50952092 original size:100 final size:100
Alignment explanation
Indices: 50951916--50952288 Score: 604
Period size: 100 Copynumber: 3.7 Consensus size: 100
50951906 CAAAACCATA
*
50951916 GATCTTACTTCCTTAGCAGTGCAATGAAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
*
50951981 ATATTGTAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
*
50952016 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
*
50952081 ATATTGCAATTAAAAAGATTGAAGCCACAACGGTG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
*
50952116 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
1 GATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
50952181 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
66 ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * * * * * * * *
50952216 GATCTTCCCTCCTTAACAGCGCAATGGAATAGATTAAAACTACGACGGTGGATCTAGTTTTCCC-
1 GATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCT-GGTTTCCCT
50952280 GATATTGCA
65 GATATTGCA
50952289 GTTGAGTAGA
Statistics
Matches: 257, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
100 250 0.97
101 7 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (100 bp):
GATCTTACTTCCTTAGCAGTGCAATGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTG
ATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
Found at i:50952240 original size:50 final size:50
Alignment explanation
Indices: 50951916--50952240 Score: 245
Period size: 50 Copynumber: 6.5 Consensus size: 50
50951906 CAAAACCATA
* * * * *
50951916 GATCTTACTTCCTTAGCAGTGCAATGAAACAGATTGAAGCTACGACGGCG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
*** * * * * *
50951966 GATCTGGTTTCCCTGATATTGTAATTAAAAAGATTGAAGCCACAACGGCG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * ** * * *
50952016 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
*** * * * * *
50952066 GATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGTG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * ** * * *
50952116 GATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
*** * * * *
50952166 GATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCG
1 GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
* * *
50952216 GATCTTCCCTCCTTAACAGCGCAAT
1 GATCTTACTTCCTTAACAGTGCAAT
50952241 GGAATAGATT
Statistics
Matches: 194, Mismatches: 81, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
50 194 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (50 bp):
GATCTTACTTCCTTAACAGTGCAATTAAAAAGATTGAAGCCACAACGGCG
Found at i:50952560 original size:44 final size:45
Alignment explanation
Indices: 50952428--50952568 Score: 134
Period size: 44 Copynumber: 3.2 Consensus size: 45
50952418 CAGTGGAATT
**
50952428 GATC-GAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
1 GATCAGAAGAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTA
* *** *
50952472 GATCA-AAGAAACAT--ATCTTGTCTCCCCATACTGATG-GTGGAGTA
1 GATCAGAAGAAA-ATAGATCTTGTCTTCATGTACTG--GCGTGAAGTA
*
50952516 GAT-AGAAGAAAATAGATCTTATCTTCATGTACTGGCGTGAAGTA
1 GATCAGAAGAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTA
50952560 GATCA-AAGA
1 GATCAGAAGA
50952569 TAGTAGGTCC
Statistics
Matches: 75, Mismatches: 13, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
43 19 0.25
44 40 0.53
45 16 0.21
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (45 bp):
GATCAGAAGAAAATAGATCTTGTCTTCATGTACTGGCGTGAAGTA
Found at i:50954591 original size:13 final size:12
Alignment explanation
Indices: 50954575--50954604 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
50954565 TTCCATAGTT
50954575 TATTTATATATTA
1 TATTTATATA-TA
50954588 TATTTATATATA
1 TATTTATATATA
50954600 TATTT
1 TATTT
50954605 TGTTCTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTTATATATA
Found at i:50957359 original size:30 final size:30
Alignment explanation
Indices: 50957323--50957382 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
50957313 TAAAAAAATA
*
50957323 AAATTATTATTGGTTCTATTTTAGATTATT
1 AAATTATTATTGGTTCTATTTTAAATTATT
50957353 AAATTATTATTGGTTCTATTTTAAATTATT
1 AAATTATTATTGGTTCTATTTTAAATTATT
50957383 TTTCTTTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (30 bp):
AAATTATTATTGGTTCTATTTTAAATTATT
Found at i:50961916 original size:17 final size:18
Alignment explanation
Indices: 50961894--50961931 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
50961884 ATAAATTATT
50961894 AAAAATACA-TAAAAATA
1 AAAAATACATTAAAAATA
*
50961911 AAAAATATATTTAAAAATA
1 AAAAATACA-TTAAAAATA
50961930 AA
1 AA
50961932 GAAAACTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAATACATTAAAAATA
Found at i:50962210 original size:10 final size:10
Alignment explanation
Indices: 50962195--50962239 Score: 67
Period size: 9 Copynumber: 4.7 Consensus size: 10
50962185 GAAAAATAGA
*
50962195 AAAAGAAAGT
1 AAAAGAAAAT
50962205 AAAAGAAAAT
1 AAAAGAAAAT
50962215 -AAAGAAAAT
1 AAAAGAAAAT
50962224 -AAAGAAAAT
1 AAAAGAAAAT
50962233 AAAAGAA
1 AAAAGAA
50962240 TTAAAAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
9 18 0.55
10 15 0.45
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (10 bp):
AAAAGAAAAT
Found at i:50962227 original size:24 final size:23
Alignment explanation
Indices: 50962182--50962236 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
50962172 CAGGAAGAAG
*
50962182 AAAGAAAAATAGAAAAAGAAAGTA
1 AAAGAAAAAAAGAAAAAGAAAG-A
*
50962206 AAAGAAAATAAAG-AAAATAAAGA
1 AAAGAAAA-AAAGAAAAAGAAAGA
*
50962229 AAATAAAA
1 AAAGAAAA
50962237 GAATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
25 3 0.11
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (23 bp):
AAAGAAAAAAAGAAAAAGAAAGA
Found at i:50962237 original size:19 final size:20
Alignment explanation
Indices: 50962195--50962239 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
50962185 GAAAAATAGA
*
50962195 AAAAGAAAGTAAAAGAAAAT
1 AAAAGAAAATAAAAGAAAAT
50962215 -AAAGAAAAT-AAAGAAAAT
1 AAAAGAAAATAAAAGAAAAT
50962233 AAAAGAA
1 AAAAGAA
50962240 TTAAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (20 bp):
AAAAGAAAATAAAAGAAAAT
Found at i:50962785 original size:23 final size:23
Alignment explanation
Indices: 50962755--50962825 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
50962745 CAACCCTGTT
50962755 TTGGACAGCAATTATTCATCAAA
1 TTGGACAGCAATTATTCATCAAA
* **
50962778 TTGGACAGCAATAATATGTTCAAA
1 TTGGACAGCAATTAT-TCATCAAA
* * *
50962802 ATGGATAGC-ATTATACATCAAA
1 TTGGACAGCAATTATTCATCAAA
50962824 TT
1 TT
50962826 AGACCTCTTA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
22 6 0.16
23 18 0.49
24 13 0.35
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (23 bp):
TTGGACAGCAATTATTCATCAAA
Found at i:50962806 original size:24 final size:23
Alignment explanation
Indices: 50962756--50962811 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
50962746 AACCCTGTTT
* *
50962756 TGGACAGCAATTATTCATCAAAT
1 TGGACAGCAATAATTCATCAAAA
**
50962779 TGGACAGCAATAATATGTTCAAAA
1 TGGACAGCAATAAT-TCATCAAAA
*
50962803 TGGATAGCA
1 TGGACAGCA
50962812 TTATACATCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (23 bp):
TGGACAGCAATAATTCATCAAAA
Found at i:50962896 original size:47 final size:47
Alignment explanation
Indices: 50962755--50963060 Score: 409
Period size: 47 Copynumber: 6.5 Consensus size: 47
50962745 CAACCCTGTT
* * * **
50962755 TTGGACAGCAATTATTCATCAAATTGGACAGCAAT-AATATGTTCAAAA
1 TTGGACAGC-ATTATACATTAAAATGGACAGC-ATCAATATACTCAAAA
* * * * ** * * *
50962803 -TGGATAGCATTATACATCAAATTAGACCTCTTAAATCTACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
* *
50962849 TTTGACAGCATTATACATTAAAATGGACAGCATCAATATACTTAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
50962896 TTGGACAGCATTATACATTAAAATGGACAACATCAATATACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
50962943 TTGGACAGTATTATACATTAAAATGGACAGCATCAATATACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
50962990 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
1 TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
*
50963037 TTAGACAGCATTATACATTAAAAT
1 TTGGACAGCATTATACATTAAAAT
50963061 TATAACACAA
Statistics
Matches: 229, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.00
46 28 0.12
47 200 0.87
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.28
Consensus pattern (47 bp):
TTGGACAGCATTATACATTAAAATGGACAGCATCAATATACTCAAAA
Found at i:50964047 original size:28 final size:27
Alignment explanation
Indices: 50963991--50964089 Score: 110
Period size: 28 Copynumber: 3.6 Consensus size: 27
50963981 TTAATAAGTA
*
50963991 CGCACACTTAGTGCTTAAT-AATCAAACT
1 CGCACACTTAGTGCTT--TCAATTAAACT
* ** *
50964019 CGCATACTTAGTGCTTTACCCTTATACT
1 CGCACACTTAGTGCTTT-CAATTAAACT
50964047 CGCACACTTAGTGCATTTCAATTAAACT
1 CGCACACTTAGTGC-TTTCAATTAAACT
50964075 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50964090 AATCTCATTA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 54 0.92
29 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.32
Consensus pattern (27 bp):
CGCACACTTAGTGCTTTCAATTAAACT
Found at i:50968894 original size:27 final size:27
Alignment explanation
Indices: 50968832--50968894 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
50968822 TTCTCAATGT
* *
50968832 TCACCATACGTACTATTTCTTCAGAGC
1 TCACAATACGTACTATTTCTTCAAAGC
* *
50968859 TCACCATACGTACTATTCTCTT-AAAGT
1 TCACAATACGTACTATT-TCTTCAAAGC
*
50968886 TTACAATAC
1 TCACAATAC
50968895 CTACCAATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (27 bp):
TCACAATACGTACTATTTCTTCAAAGC
Found at i:50968978 original size:53 final size:52
Alignment explanation
Indices: 50968920--50969305 Score: 351
Period size: 53 Copynumber: 7.1 Consensus size: 52
50968910 AGCTAGTCAC
* * * *
50968920 ACATATCATTCCTTCAGGGTTTGCCATACTTACCATTCCTCAGATTTAGCCAT
1 ACATATCATT-CTTCAGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
* * * *
50968973 ACATATCATTCTTCCAGGGTTTGCCTTATTTACTATTATTAAAAGTTAGCCAT
1 ACATATCATTCTT-CAGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
* * * ** * **
50969026 ACATATAATTTTTCTAGGGTTTGCCATACTTACTGTTCCTCGTAGTTAGCCAT
1 ACATATCATTCTTC-AGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
* * *
50969079 ACATATCATTCTTTTAAGGTTTTCCATATTTACCATTCTTCAAAGTTAGCCAT
1 ACATATCATTC-TTCAGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
* *
50969132 ACATATCATTCTTCTAGGGTTTGCCGTATTTACCATTCTTCAAAATTAGCCATACATGTCTT
1 ACATATCATTCTTC-AGGGTTTGCCATATTTACCATTCTTCAAAGTTAG-C---CA-----T
* * *
50969194 ACATATCATTCTTCTAGTGTTTACCGTATTTACCAATT-TTCAAAGTTAGCCAT
1 ACATATCATTCTTC-AGGGTTTGCCATATTTACC-ATTCTTCAAAGTTAGCCAT
* * * * *
50969247 ACATATCATTCTTCCAAGGTTTGTCATATTTACCATTCTCCAGAGTTAGTCAT
1 ACATATCATTCTT-CAGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
50969300 ACATAT
1 ACATAT
50969306 AGTCATACAT
Statistics
Matches: 272, Mismatches: 45, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
52 9 0.03
53 208 0.76
54 4 0.01
57 2 0.01
58 2 0.01
61 1 0.00
62 43 0.16
63 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (52 bp):
ACATATCATTCTTCAGGGTTTGCCATATTTACCATTCTTCAAAGTTAGCCAT
Found at i:50969228 original size:62 final size:62
Alignment explanation
Indices: 50969131--50969250 Score: 197
Period size: 62 Copynumber: 1.9 Consensus size: 62
50969121 AAGTTAGCCA
*
50969131 TACATATCATTCTTCTAGGGTTTGCCGTATTTACC-ATTCTTCAAAATTAGCCATACATGTCT
1 TACATATCATTCTTCTAGGGTTTACCGTATTTACCAATT-TTCAAAATTAGCCATACATGTCT
* *
50969193 TACATATCATTCTTCTAGTGTTTACCGTATTTACCAATTTTCAAAGTTAGCCATACAT
1 TACATATCATTCTTCTAGGGTTTACCGTATTTACCAATTTTCAAAATTAGCCATACAT
50969251 ATCATTCTTC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
62 51 0.94
63 3 0.06
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (62 bp):
TACATATCATTCTTCTAGGGTTTACCGTATTTACCAATTTTCAAAATTAGCCATACATGTCT
Found at i:50969280 original size:115 final size:116
Alignment explanation
Indices: 50969076--50969332 Score: 340
Period size: 115 Copynumber: 2.2 Consensus size: 116
50969066 CGTAGTTAGC
* *
50969076 CATACATATCATTCTTTTAAGGTTTTCCATATTTACCATTCTTCAAAGTTAGCCATACATATCAT
1 CATACATATCATTCTTCT-AGGTTTACCATATTTACCATTCTTCAAAGTTAGCCATACATATCAT
* * * *
50969141 TCTTCTAGGGTTTGCCGTATTTACCATTCTTCAAAATTAGCCATAC-AT-GT
65 TCTTCCAAGGTTTGCCATATTTACCATTCTCCAAAATTAGCCATACAATAGT
* *
50969191 CTTACATATCATTCTTCTAGTGTTTACCGTATTTACCAATT-TTCAAAGTTAGCCATACATATCA
1 CATACATATCATTCTTCTAG-GTTTACCATATTTACC-ATTCTTCAAAGTTAGCCATACATATCA
* * * *
50969255 TTCTTCCAAGGTTTGTCATATTTACCATTCTCCAGAGTTAGTCATACATATAGT
64 TTCTTCCAAGGTTTGCCATATTTACCATTCTCCAAAATTAGCCATACA-ATAGT
*
50969309 CATACATATGATTCTTCTAGGTTT
1 CATACATATCATTCTTCTAGGTTT
50969333 TGTCATACTT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
114 2 0.02
115 92 0.75
116 3 0.02
117 6 0.05
118 20 0.16
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (116 bp):
CATACATATCATTCTTCTAGGTTTACCATATTTACCATTCTTCAAAGTTAGCCATACATATCATT
CTTCCAAGGTTTGCCATATTTACCATTCTCCAAAATTAGCCATACAATAGT
Found at i:50969310 original size:12 final size:12
Alignment explanation
Indices: 50969293--50969317 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50969283 TCTCCAGAGT
50969293 TAGTCATACATA
1 TAGTCATACATA
50969305 TAGTCATACATA
1 TAGTCATACATA
50969317 T
1 T
50969318 GATTCTTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TAGTCATACATA
Found at i:50971045 original size:54 final size:54
Alignment explanation
Indices: 50970978--50971094 Score: 146
Period size: 54 Copynumber: 2.1 Consensus size: 54
50970968 CATGAATGCG
*
50970978 TTCCATTGTATAGATCACCACAAAGGCTTTTA-TTTCATAGATTGCTACAAAGGC
1 TTCCATT-TATAGATCACCACAAAGGCTTTTATTTTCATAGATTGCCACAAAGGC
** * * *
50971032 TTCCATTTCATAGATTGCCATAAAGGCTTTTATTTTCATAGGTTGCCCCAAAGGC
1 TTCCATTT-ATAGATCACCACAAAGGCTTTTATTTTCATAGATTGCCACAAAGGC
*
50971087 TTTCATTT
1 TTCCATTT
50971095 TCTAGCGTGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.02
54 27 0.50
55 26 0.48
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (54 bp):
TTCCATTTATAGATCACCACAAAGGCTTTTATTTTCATAGATTGCCACAAAGGC
Found at i:50971096 original size:28 final size:27
Alignment explanation
Indices: 50970995--50971094 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
50970985 GTATAGATCA
*
50970995 CCACAAAGGCTTTTATTTCATAGATTG
1 CCACAAAGGCTTTCATTTCATAGATTG
* *
50971022 CTACAAAGGCTTCCATTTCATAGATTG
1 CCACAAAGGCTTTCATTTCATAGATTG
* * *
50971049 CCATAAAGGCTTTTATTTTCATAGGTTG
1 CCACAAAGGCTTTCA-TTTCATAGATTG
*
50971077 CCCCAAAGGCTTTCATTT
1 CCACAAAGGCTTTCATTT
50971095 TCTAGCGTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 38 0.62
28 23 0.38
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (27 bp):
CCACAAAGGCTTTCATTTCATAGATTG
Found at i:50984330 original size:33 final size:35
Alignment explanation
Indices: 50984293--50984388 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 35
50984283 ATGGTTATAT
50984293 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
50984326 TTAAAT-TTTATAAATAATAA-ATATTTATTGCTTAA
1 TTAAATATTTA-AAAT-ATAATTTATATATTGCTTAA
*
50984361 --AAATATTTAAAATTTATATTTCATATAT
1 TTAAATATTTAAAATATA-ATTT-ATATAT
50984389 AAAAATATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
32 6 0.12
33 26 0.52
34 10 0.20
35 8 0.16
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:50984638 original size:26 final size:25
Alignment explanation
Indices: 50984575--50984640 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
50984565 TAAACCAAAA
*
50984575 TTTTCAAAAGCACTTCTTAAAAGCAC
1 TTTTCAAAAGCA-TTCTTAAAAACAC
* * *
50984601 TTTTCCACAGCATATTTTAAAAACAC
1 TTTTCAAAAGCAT-TCTTAAAAACAC
50984627 TTTTCAAAAGCATT
1 TTTTCAAAAGCATT
50984641 GCTAAACTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (25 bp):
TTTTCAAAAGCATTCTTAAAAACAC
Found at i:50989215 original size:26 final size:26
Alignment explanation
Indices: 50989107--50989217 Score: 82
Period size: 26 Copynumber: 4.3 Consensus size: 26
50989097 AGATGGGTCG
* * * * *
50989107 GAGGTCCCCTAAGTTTGAGTCGGCTC
1 GAGGACCCTTAAGTTTGAGTTGGTTA
* * *
50989133 GAGGACCCTTGAGTTTGATTTGGTTG
1 GAGGACCCTTAAGTTTGAGTTGGTTA
* * * *
50989159 GA-GATTCCTTGAGTTTGAGTGGGTCCA
1 GAGGA-CCCTTAAGTTTGAGTTGGT-TA
50989186 -AGGACCCTTAAGTTTGAGTTGGTTA
1 GAGGACCCTTAAGTTTGAGTTGGTTA
50989211 GAGGACC
1 GAGGACC
50989218 ATAAGCGGAT
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
25 3 0.05
26 60 0.92
27 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (26 bp):
GAGGACCCTTAAGTTTGAGTTGGTTA
Found at i:50989832 original size:27 final size:27
Alignment explanation
Indices: 50989802--50989856 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 27
50989792 GCCAGCATGA
50989802 TTGGCGAACTATG-GTTCGCTAGTAGGT
1 TTGGCGAAC-ATGAGTTCGCTAGTAGGT
50989829 TTGGCGAACATGAGTTCGCTAGTAGGT
1 TTGGCGAACATGAGTTCGCTAGTAGGT
50989856 T
1 T
50989857 GGCAAATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.33
Consensus pattern (27 bp):
TTGGCGAACATGAGTTCGCTAGTAGGT
Found at i:51000994 original size:27 final size:24
Alignment explanation
Indices: 51000939--51000987 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
51000929 AAAAAATCAA
51000939 AAAAATTATAAAAAAATTTATTTT
1 AAAAATTATAAAAAAATTTATTTT
* *
51000963 AAAAATTATTAAAAAATAT-TTTT
1 AAAAATTATAAAAAAATTTATTTT
51000986 AA
1 AA
51000988 TTAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
AAAAATTATAAAAAAATTTATTTT
Found at i:51000999 original size:26 final size:25
Alignment explanation
Indices: 51000937--51001000 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 25
51000927 TAAAAAAATC
51000937 AAAAAAATTATAAAAAAATTTATTTT
1 AAAAAAATTA-AAAAAAATTTATTTT
* *
51000963 AAAAATTATTAAAAAATATTT-TTAATT
1 AAAAA-AATTAAAAAAAATTTATT--TT
51000990 AAAAAAATTAA
1 AAAAAAATTAA
51001001 TTAATTGCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 2 0.06
26 19 0.59
27 11 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
AAAAAAATTAAAAAAAATTTATTTT
Found at i:51001002 original size:13 final size:12
Alignment explanation
Indices: 51000937--51000978 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
51000927 TAAAAAAATC
51000937 AAAAAAATTA-T
1 AAAAAAATTATT
51000948 AAAAAAATTTATT
1 AAAAAAA-TTATT
**
51000961 TTAAAAATTATT
1 AAAAAAATTATT
51000973 AAAAAA
1 AAAAAA
51000979 TATTTTTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
11 7 0.28
12 12 0.48
13 6 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAAAAATTATT
Found at i:51001004 original size:17 final size:18
Alignment explanation
Indices: 51000966--51001006 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
51000956 TTATTTTAAA
51000966 AATT-ATTAAAAAATATT
1 AATTAATTAAAAAATATT
*
51000983 -TTTAATTAAAAAA-ATT
1 AATTAATTAAAAAATATT
51000999 AATTAATT
1 AATTAATT
51001007 GCTAACATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTAATTAAAAAATATT
Found at i:51006014 original size:24 final size:22
Alignment explanation
Indices: 51005987--51006033 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
51005977 ATTAATTATC
*
51005987 AATTCAATAAAATTTCTAAACTAA
1 AATTAAATAAAA-TTCTAAA-TAA
*
51006011 AATTAAATATAATTCTAAATAA
1 AATTAAATAAAATTCTAAATAA
51006033 A
1 A
51006034 CTCATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
23 7 0.33
24 10 0.48
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (22 bp):
AATTAAATAAAATTCTAAATAA
Found at i:51011247 original size:26 final size:24
Alignment explanation
Indices: 51011210--51011257 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
51011200 AATAAAGAAT
51011210 AAAATCCGAAATGAATAACAGTCCCC
1 AAAATCCGAAAT-AA-AACAGTCCCC
51011236 AAAAGTCC-AAATAAAACAGTCC
1 AAAA-TCCGAAATAAAACAGTCC
51011258 AGTTGAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 2 0.10
26 8 0.38
27 3 0.14
ACGTcount: A:0.50, C:0.25, G:0.10, T:0.15
Consensus pattern (24 bp):
AAAATCCGAAATAAAACAGTCCCC
Found at i:51015904 original size:59 final size:58
Alignment explanation
Indices: 51015724--51016007 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
51015714 ATGATAAATT
* ** * *
51015724 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
51015783 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
51015844 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
51015903 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
51015965 T
58 C
*
51015966 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
51016008 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:51015931 original size:120 final size:122
Alignment explanation
Indices: 51015717--51016007 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
51015707 TAGTATGATG
* **
51015717 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
51015782 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
51015838 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
51015901 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
51015959 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
51016008 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:51015986 original size:18 final size:19
Alignment explanation
Indices: 51015951--51015987 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
51015941 ATTATTAAGA
51015951 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
51015970 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
51015988 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:51016247 original size:16 final size:16
Alignment explanation
Indices: 51016223--51016291 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
51016213 GATTAGCTAT
*
51016223 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
51016239 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
51016256 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51016272 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51016288 TACA
1 TACA
51016292 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51016270 original size:33 final size:32
Alignment explanation
Indices: 51016223--51016291 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
51016213 GATTAGCTAT
*
51016223 TACATCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
51016256 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
51016288 TACA
1 TACA
51016292 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:51018376 original size:32 final size:32
Alignment explanation
Indices: 51018334--51018413 Score: 115
Period size: 32 Copynumber: 2.5 Consensus size: 32
51018324 GTGTGGGCCC
* ** *
51018334 ACACATCCAAATCAGCGTTGCCTGTGTGGCTT
1 ACACACCCAAATCAGCCCTGCCCGTGTGGCTT
*
51018366 ACACACCCAAATCAACCCTGCCCGTGTGGCTT
1 ACACACCCAAATCAGCCCTGCCCGTGTGGCTT
51018398 ACACACCCAAATCAGC
1 ACACACCCAAATCAGC
51018414 TTAGGCCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.28, C:0.36, G:0.16, T:0.20
Consensus pattern (32 bp):
ACACACCCAAATCAGCCCTGCCCGTGTGGCTT
Found at i:51032209 original size:63 final size:63
Alignment explanation
Indices: 51032091--51032210 Score: 143
Period size: 63 Copynumber: 1.9 Consensus size: 63
51032081 GTGTCAGGCC
* * ** **
51032091 GTGTAACTCACTGTTTGTGATTTAGGGTCACACAAGCTAGGGACTTGGGCATGTGTCCAAGTT
1 GTGTAACTCACTGTTTGTGAATTAGGGTCACACAAGCCAGAAACACGGGCATGTGTCCAAGTT
* * *
51032154 GTGTAACTCACTGTTTGTGAATT-GGTGTCACACGAGCCATAAACACGGGCGTGTGTC
1 GTGTAACTCACTGTTTGTGAATTAGG-GTCACACAAGCCAGAAACACGGGCATGTGTC
51032211 TAGGCCATGT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
62 2 0.04
63 45 0.96
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (63 bp):
GTGTAACTCACTGTTTGTGAATTAGGGTCACACAAGCCAGAAACACGGGCATGTGTCCAAGTT
Found at i:51037281 original size:27 final size:26
Alignment explanation
Indices: 51037236--51037299 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
51037226 TTTATCGAGG
* *
51037236 TTATTAGTTTATTGATAAACAAATATT
1 TTATTAATTTATCGATAAACAAATA-T
* **
51037263 TTTTTAATTTATCGATAAATTAATAT
1 TTATTAATTTATCGATAAACAAATAT
51037289 TTATTAATTTA
1 TTATTAATTTA
51037300 GAGAATATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (26 bp):
TTATTAATTTATCGATAAACAAATAT
Found at i:51037420 original size:38 final size:38
Alignment explanation
Indices: 51037375--51037451 Score: 129
Period size: 38 Copynumber: 2.0 Consensus size: 38
51037365 ATGATCAAAG
51037375 TTAATTGGTTCATGTAA-CAAAAAGAAAAAAAGAGTTAA
1 TTAATTGGTTCATGTAACCAAAAAG-AAAAAAGAGTTAA
*
51037413 TTAATTGGTTCATGTAACCAAAAAGAAAAAATAGTTAA
1 TTAATTGGTTCATGTAACCAAAAAGAAAAAAGAGTTAA
51037451 T
1 T
51037452 GGTTTCAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 30 0.81
39 7 0.19
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (38 bp):
TTAATTGGTTCATGTAACCAAAAAGAAAAAAGAGTTAA
Found at i:51039927 original size:19 final size:19
Alignment explanation
Indices: 51039888--51039929 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
51039878 GAGAACCATT
*
51039888 ATATTTTTAAAATATATAA
1 ATATTTTTAAAATATAAAA
51039907 ATATTTTTAATAATA-AAAA
1 ATATTTTTAA-AATATAAAA
51039926 ATAT
1 ATAT
51039930 ATATTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTTTTAAAATATAAAA
Found at i:51047524 original size:15 final size:15
Alignment explanation
Indices: 51047504--51047532 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51047494 AGAGAAAAAT
51047504 TATTTTAATTGATAG
1 TATTTTAATTGATAG
51047519 TATTTTAATTGATA
1 TATTTTAATTGATA
51047533 CAGTTACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
TATTTTAATTGATAG
Found at i:51050555 original size:31 final size:31
Alignment explanation
Indices: 51050453--51050557 Score: 138
Period size: 31 Copynumber: 3.4 Consensus size: 31
51050443 AAGGAATCTG
* * *
51050453 GTGAGTGGTTATTTGTGGGACTTAGTCGGAT
1 GTGAGTGGTTAATTATGGGACTTAGTGGGAT
* * * *
51050484 CTGGGTGGTAAATTATGGAACTTAGTGGGAT
1 GTGAGTGGTTAATTATGGGACTTAGTGGGAT
*
51050515 GTGGGTGGTTAATTATGGGACTTAGTGGGAT
1 GTGAGTGGTTAATTATGGGACTTAGTGGGAT
51050546 GTGAGTGGTTAA
1 GTGAGTGGTTAA
51050558 GAAATTATCC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.21, C:0.05, G:0.39, T:0.35
Consensus pattern (31 bp):
GTGAGTGGTTAATTATGGGACTTAGTGGGAT
Found at i:51057265 original size:45 final size:45
Alignment explanation
Indices: 51057160--51057283 Score: 160
Period size: 45 Copynumber: 2.7 Consensus size: 45
51057150 TACCATAACA
* * **
51057160 TCTTTCAACTATGGTCTTACTTGTTTTAATCATATTGTCATAGTG
1 TCTTTCAACTATGGTCTTACTTGTTTTAATCATATTATCACAACG
* *
51057205 ACTTTTAACTATGGTCTTACTTGTTTTAATCATATTATCACAACG
1 TCTTTCAACTATGGTCTTACTTGTTTTAATCATATTATCACAACG
*
51057250 TCTTTCAACTGTGGTCTTACTCAT-TTTTAATCAT
1 TCTTTCAACTATGGTCTTACT--TGTTTTAATCAT
51057284 GTTTACGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 57 0.84
46 10 0.15
47 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTACTTGTTTTAATCATATTATCACAACG
Found at i:51064349 original size:21 final size:21
Alignment explanation
Indices: 51064325--51064368 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
51064315 TGCAATCTTG
* * *
51064325 CTCCTCAGTAGCAAACTCCTA
1 CTCCTCAATAGAAAAATCCTA
*
51064346 CTCCTTAATAGAAAAATCCTA
1 CTCCTCAATAGAAAAATCCTA
51064367 CT
1 CT
51064369 TTATGCAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.32, G:0.07, T:0.27
Consensus pattern (21 bp):
CTCCTCAATAGAAAAATCCTA
Found at i:51065253 original size:23 final size:19
Alignment explanation
Indices: 51065211--51065249 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
51065201 ATTATTTAAC
51065211 AATCAATCTGAAACATCAT
1 AATCAATCTGAAACATCAT
51065230 AATCAATCTGAAACATCAT
1 AATCAATCTGAAACATCAT
51065249 A
1 A
51065250 CATACAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (19 bp):
AATCAATCTGAAACATCAT
Found at i:51065742 original size:32 final size:32
Alignment explanation
Indices: 51065701--51065762 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
51065691 ACATCGAAAG
51065701 TTCTGGTTGAGTATAACACGACATATATGATA
1 TTCTGGTTGAGTATAACACGACATATATGATA
51065733 TTCTGGTTGAGTATAACACGACATATATGA
1 TTCTGGTTGAGTATAACACGACATATATGA
51065763 GTTATTTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (32 bp):
TTCTGGTTGAGTATAACACGACATATATGATA
Found at i:51071035 original size:30 final size:30
Alignment explanation
Indices: 51071001--51071263 Score: 292
Period size: 30 Copynumber: 8.8 Consensus size: 30
51070991 CATTTTAGGG
*
51071001 TTGCTCACACAAGTTGACATTATAATCGGA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* * *
51071031 TTGCTCACGCAACCTGACATTATAATTGGA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* * *
51071061 TTGTTCACACAAGTTGACATTATAATCGAA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* * *
51071091 TTGCTCACACAACCTAACATTATAATTGGA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* * * * *
51071121 TTGTTCACATAAGTTGACATTATGATCGGG
1 TTGCTCACACAAGCTGACATTATAATCGGA
* *
51071151 TTGCTCACACAAGCTGACATTATGATAGGA
1 TTGCTCACACAAGCTGACATTATAATCGGA
*
51071181 TTGCTCACACAAGCTGACATTATAATTGGA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* * * ***
51071211 TTGCTCACACAAGTTGGCATTATGATAAAA
1 TTGCTCACACAAGCTGACATTATAATCGGA
* *
51071241 TTGCTCATACAAGCTAACATTAT
1 TTGCTCACACAAGCTGACATTAT
51071264 CGTCGAGTTA
Statistics
Matches: 192, Mismatches: 41, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 192 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACATTATAATCGGA
Found at i:51071098 original size:60 final size:60
Alignment explanation
Indices: 51071005--51071222 Score: 328
Period size: 60 Copynumber: 3.6 Consensus size: 60
51070995 TTAGGGTTGC
*
51071005 TCACACAAGTTGACATTATAATCGGATTGCTCACGCAACCTGACATTATAATTGGATTGT
1 TCACACAAGTTGACATTATAATCGGATTGCTCACACAACCTGACATTATAATTGGATTGT
* *
51071065 TCACACAAGTTGACATTATAATCGAATTGCTCACACAACCTAACATTATAATTGGATTGT
1 TCACACAAGTTGACATTATAATCGGATTGCTCACACAACCTGACATTATAATTGGATTGT
* * * * * * *
51071125 TCACATAAGTTGACATTATGATCGGGTTGCTCACACAAGCTGACATTATGATAGGATTGC
1 TCACACAAGTTGACATTATAATCGGATTGCTCACACAACCTGACATTATAATTGGATTGT
* *
51071185 TCACACAAGCTGACATTATAATTGGATTGCTCACACAA
1 TCACACAAGTTGACATTATAATCGGATTGCTCACACAA
51071223 GTTGGCATTA
Statistics
Matches: 141, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 141 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (60 bp):
TCACACAAGTTGACATTATAATCGGATTGCTCACACAACCTGACATTATAATTGGATTGT
Found at i:51074522 original size:35 final size:35
Alignment explanation
Indices: 51074470--51074607 Score: 152
Period size: 35 Copynumber: 3.9 Consensus size: 35
51074460 CTATTGGTCC
*
51074470 TTCGGGGCGACACTGTGTAAATGATATAC-AGATAA
1 TTCGGGACGACACTGTGTAAATGATATACAAG-TAA
* * * *
51074505 TTCGGGATGACATTGTGTAAATGGTATACAAGTCA
1 TTCGGGACGACACTGTGTAAATGATATACAAGTAA
* **
51074540 TTTGGGACGACACTGTGTAAATGATATACAAGTCC
1 TTCGGGACGACACTGTGTAAATGATATACAAGTAA
* ** *
51074575 TTCGGGGCGACACCATGAAAATGATATACAAGT
1 TTCGGGACGACACTGTGTAAATGATATACAAGT
51074608 CCTGTGAGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
35 85 0.98
36 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (35 bp):
TTCGGGACGACACTGTGTAAATGATATACAAGTAA
Found at i:51074622 original size:70 final size:70
Alignment explanation
Indices: 51074477--51074622 Score: 161
Period size: 70 Copynumber: 2.1 Consensus size: 70
51074467 TCCTTCGGGG
* *** * * *
51074477 CGACACTGTGTAAATGATATACAGATAATTCGGGATGACATTGTGTAAATGGTATACAAGTCATT
1 CGACACTGTGTAAATGATATACAGATAATTCGGGACGACACCATGAAAATGATATACAAGTCATG
51074542 TGGGA
66 TGGGA
** * *
51074547 CGACACTGTGTAAATGATATACA-AGTCCTTCGGGGCGACACCATGAAAATGATATACAAGTCCT
1 CGACACTGTGTAAATGATATACAGA-TAATTCGGGACGACACCATGAAAATGATATACAAGTCAT
51074611 GTGAGGA
65 GTG-GGA
51074618 -GACAC
1 CGACAC
51074623 ATTGAAAGGG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
69 1 0.02
70 59 0.94
71 3 0.05
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (70 bp):
CGACACTGTGTAAATGATATACAGATAATTCGGGACGACACCATGAAAATGATATACAAGTCATG
TGGGA
Found at i:51074629 original size:35 final size:33
Alignment explanation
Indices: 51074523--51074629 Score: 92
Period size: 35 Copynumber: 3.1 Consensus size: 33
51074513 GACATTGTGT
* * *
51074523 AAATGGTATACAAGTCATTTGGGACGACAC-TGTGT
1 AAATGATATACAAGTC-CTTGGGA-GACACAT-TGA
*
51074558 AAATGATATACAAGTCCTTCGGGGCGACACCA-TGA
1 AAATGATATACAAGTCCTT--GGGAGACA-CATTGA
51074593 AAATGATATACAAGTCCTGTGAGGAGACACATTGA
1 AAATGATATACAAGTCCT-TG-GGAGACACATTGA
51074628 AA
1 AA
51074630 GGGGTTTACT
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
34 5 0.08
35 50 0.83
36 5 0.08
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (33 bp):
AAATGATATACAAGTCCTTGGGAGACACATTGA
Found at i:51081905 original size:29 final size:29
Alignment explanation
Indices: 51081840--51081905 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
51081830 GGATGGCTAG
* * *
51081840 CCCGTGTGGCCCACACGGGCAAGCACACG
1 CCCGTGTGGCCCACACGGCCAAGCAAACA
* * *
51081869 CTCTTGTGGCCCACACGGCCGAGCAAACA
1 CCCGTGTGGCCCACACGGCCAAGCAAACA
51081898 CCCGTGTG
1 CCCGTGTG
51081906 ACTCAAGTCA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (29 bp):
CCCGTGTGGCCCACACGGCCAAGCAAACA
Found at i:51087853 original size:22 final size:23
Alignment explanation
Indices: 51087823--51087877 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
51087813 AACACAAGAT
*
51087823 ATCAAATACAGT-TGTAGAACAC
1 ATCAGATACAGTATGTAGAACAC
*
51087845 ATCAGATACA-TATGTAGAACAT
1 ATCAGATACAGTATGTAGAACAC
51087867 ATCAGATACAG
1 ATCAGATACAG
51087878 ATGCAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (23 bp):
ATCAGATACAGTATGTAGAACAC
Found at i:51111248 original size:42 final size:44
Alignment explanation
Indices: 51111149--51111255 Score: 182
Period size: 44 Copynumber: 2.5 Consensus size: 44
51111139 AAAAGGATGG
51111149 GAAGATAATCTTGGGTTGTTGAAAAAAGAATTTAAAAAAAGAGA
1 GAAGATAATCTTGGGTTGTTGAAAAAAGAATTTAAAAAAAGAGA
*
51111193 GAAGATAATCTTGGGTTGTTGAAAAAAGAATTT-AAAAAA-TGA
1 GAAGATAATCTTGGGTTGTTGAAAAAAGAATTTAAAAAAAGAGA
*
51111235 GAAGATAAACTTGGGTTGTTG
1 GAAGATAATCTTGGGTTGTTG
51111256 GGTGTACCCT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
42 22 0.36
43 6 0.10
44 33 0.54
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.28
Consensus pattern (44 bp):
GAAGATAATCTTGGGTTGTTGAAAAAAGAATTTAAAAAAAGAGA
Found at i:51115706 original size:27 final size:26
Alignment explanation
Indices: 51115669--51115722 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
51115659 ATTAAACATG
51115669 AAATAGAGTAAGTCCGCTAGGACAAT
1 AAATAGAGTAAGTCCGCTAGGACAAT
** *
51115695 AAATACGAGTAAGTTTGTTAGGACAAT
1 AAATA-GAGTAAGTCCGCTAGGACAAT
51115722 A
1 A
51115723 GAAAAGAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (26 bp):
AAATAGAGTAAGTCCGCTAGGACAAT
Found at i:51122818 original size:6 final size:6
Alignment explanation
Indices: 51122807--51122838 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
51122797 TTATATTGAT
51122807 AATAAA AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AA
51122839 GTTTTAGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:51122943 original size:20 final size:20
Alignment explanation
Indices: 51122897--51123015 Score: 73
Period size: 20 Copynumber: 5.9 Consensus size: 20
51122887 TTTAGTAAGT
* * *
51122897 TCATATAAAAATTGATAAAT
1 TCATAGAAATATTGATAAAA
*
51122917 TGATAGAAATATTGATAAAA
1 TCATAGAAATATTGATAAAA
* *
51122937 TCTTAGATAAT-TTGGT-AAA
1 TCATAGA-AATATTGATAAAA
* * * * *
51122956 TCCAAAAAAATATGGGTAAAT
1 T-CATAGAAATATTGATAAAA
*
51122977 TCATACAAAT-TATGATAAAA
1 TCATAGAAATAT-TGATAAAA
51122997 TCATTAGAAATATTGATAA
1 TCA-TAGAAATATTGATAA
51123016 TTGTTAAGAT
Statistics
Matches: 74, Mismatches: 18, Indels: 13
0.70 0.17 0.12
Matches are distributed among these distances:
19 8 0.11
20 47 0.64
21 18 0.24
22 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (20 bp):
TCATAGAAATATTGATAAAA
Found at i:51123103 original size:20 final size:20
Alignment explanation
Indices: 51123080--51123118 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51123070 AATATGTTGA
51123080 TAAATCCTTAGAAATATTGG
1 TAAATCCTTAGAAATATTGG
* *
51123100 TAAATCTTTAGATATATTG
1 TAAATCCTTAGAAATATTG
51123119 ATAAGTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (20 bp):
TAAATCCTTAGAAATATTGG
Found at i:51123237 original size:20 final size:20
Alignment explanation
Indices: 51123214--51123568 Score: 172
Period size: 20 Copynumber: 17.8 Consensus size: 20
51123204 TTGTAAAATT
51123214 TTAGAAATTTTGGTAAATCG
1 TTAGAAATTTTGGTAAATCG
* * *
51123234 TTAGATATTTTTGTGAAA-CA
1 TTAGAAATTTTGGT-AAATCG
* *
51123254 TTAAAAATTTTGGTAAATCA
1 TTAGAAATTTTGGTAAATCG
** * * *
51123274 TTAGATGTTTCGGTAAAACC
1 TTAGAAATTTTGGTAAATCG
* * * *
51123294 TTAAAAATTTTGATAATTTG
1 TTAGAAATTTTGGTAAATCG
* * * *
51123314 TTAGACATATCGGTAAATCC
1 TTAGAAATTTTGGTAAATCG
* *
51123334 TTATAAATTTTGATAAA-CTG
1 TTAGAAATTTTGGTAAATC-G
*
51123354 TTAGATATATTT-GTAAATCG
1 TTAGAAAT-TTTGGTAAATCG
**
51123374 CCA-AATATTTTGGTAAATTC-
1 TTAGAA-ATTTTGGTAAA-TCG
* *
51123394 ATAGAAATATTGGTAAA--G
1 TTAGAAATTTTGGTAAATCG
* *
51123412 TTTCAAAAATATTGGTAAATCG
1 -TT-AGAAATTTTGGTAAATCG
* * * * *
51123434 ATGGAAATTTTGATATATTG
1 TTAGAAATTTTGGTAAATCG
*
51123454 TTAGATATTTTGGTAAATTC-
1 TTAGAAATTTTGGTAAA-TCG
* * *
51123474 TCAGAAATATTGGTAAATTG
1 TTAGAAATTTTGGTAAATCG
* * *
51123494 TTAG-ATTTATTGGTAAGTCC
1 TTAGAAATT-TTGGTAAATCG
*
51123514 TTAGAAATTTTGGTAAATCA
1 TTAGAAATTTTGGTAAATCG
*
51123534 TTAGATATTTTGGTAAAGTC-
1 TTAGAAATTTTGGTAAA-TCG
*
51123554 ATAGAAATTTTGGTA
1 TTAGAAATTTTGGTA
51123569 TTTGTTAAGA
Statistics
Matches: 241, Mismatches: 75, Indels: 38
0.68 0.21 0.11
Matches are distributed among these distances:
19 12 0.05
20 210 0.87
21 18 0.07
22 1 0.00
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.41
Consensus pattern (20 bp):
TTAGAAATTTTGGTAAATCG
Found at i:51123521 original size:80 final size:80
Alignment explanation
Indices: 51123378--51123568 Score: 224
Period size: 80 Copynumber: 2.4 Consensus size: 80
51123368 AAATCGCCAA
* *
51123378 ATATTTTGGTAAATTCATAGAAATATTGGTAAAGTTTCAAAAATATTGGTAAATCGATGGAAATT
1 ATATTTTGGTAAATTCATAGAAATATTGGTAAAGTTTCAAAAATATTGGTAAATCCATAGAAATT
* **
51123443 TTGATATATTGTTAG
66 TTGATAAATCATTAG
* * ** * *
51123458 ATATTTTGGTAAATTC-TCAGAAATATTGGTAAA-TTGTTAGATTTATTGGTAAGTCCTTAGAAA
1 ATATTTTGGTAAATTCAT-AGAAATATTGGTAAAGTT-TCAAAAATATTGGTAAATCCATAGAAA
*
51123521 TTTTGGTAAATCATTAG
64 TTTTGATAAATCATTAG
* *
51123538 ATATTTTGGTAAAGTCATAGAAATTTTGGTA
1 ATATTTTGGTAAATTCATAGAAATATTGGTA
51123569 TTTGTTAAGA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 90 0.96
81 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (80 bp):
ATATTTTGGTAAATTCATAGAAATATTGGTAAAGTTTCAAAAATATTGGTAAATCCATAGAAATT
TTGATAAATCATTAG
Found at i:51123694 original size:20 final size:19
Alignment explanation
Indices: 51123669--51123718 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
51123659 CGTTAGATAT
*
51123669 ATATTGGTAAGTTCTTAGAA
1 ATATTGGTAAG-TCATAGAA
51123689 ATATTGGTAAAGTCATAGAA
1 ATATTGGT-AAGTCATAGAA
*
51123709 ATTTTGGTAA
1 ATATTGGTAA
51123719 TTGTTAAGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (19 bp):
ATATTGGTAAGTCATAGAA
Found at i:51123728 original size:149 final size:150
Alignment explanation
Indices: 51123534--51123818 Score: 376
Period size: 149 Copynumber: 1.9 Consensus size: 150
51123524 TGGTAAATCA
* * * * **
51123534 TTAGATATTTTGGTAAAGTCATAGAAATTTTGGTATTTGTTAAGACTTCACATGGTGTTTAGAAA
1 TTAGAAATATTGGTAAAGTCATAGAAATTTTGGTAATTGTTAAGACTTCACATAGAATTTAGAAA
* * * *
51123599 ATTTGAAAATATTGGTGAAGTCTCA-TAAATATTGATAAAAAGATA-AAAATTTTGATAAATCGT
66 ATTTGAAAATATTAGTAAAATCTCAGAAAATATTGATAAAAAGATAGAAAA-TTTGATAAATCGT
51123662 TAGATATATATTGGTAAGTTC
130 TAGATATATATTGGTAAGTTC
* **
51123683 TTAGAAATATTGGTAAAGTCATAGAAATTTTGGTAATTGTTAAGACTTGATGTAGAATTTAGAAA
1 TTAGAAATATTGGTAAAGTCATAGAAATTTTGGTAATTGTTAAGACTTCACATAGAATTTAGAAA
* * * * * *
51123748 ATTTGGAAATATTAGTAAAATCTTAGAAAATATTGGTAAAATGATAGAAAATTTGGTAAATTGTT
66 ATTTGAAAATATTAGTAAAATCTCAGAAAATATTGATAAAAAGATAGAAAATTTGATAAATCGTT
51123813 AGATAT
131 AGATAT
51123819 TCTGGTAAAT
Statistics
Matches: 115, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
149 76 0.66
150 35 0.30
151 4 0.03
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (150 bp):
TTAGAAATATTGGTAAAGTCATAGAAATTTTGGTAATTGTTAAGACTTCACATAGAATTTAGAAA
ATTTGAAAATATTAGTAAAATCTCAGAAAATATTGATAAAAAGATAGAAAATTTGATAAATCGTT
AGATATATATTGGTAAGTTC
Found at i:51123779 original size:21 final size:21
Alignment explanation
Indices: 51123754--51123807 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
51123744 GAAAATTTGG
* *
51123754 AAATATTAGTAAAATCTTAGA
1 AAATATTGGTAAAATCATAGA
*
51123775 AAATATTGGTAAAATGATAGA
1 AAATATTGGTAAAATCATAGA
51123796 AAAT-TTGGTAAA
1 AAATATTGGTAAA
51123808 TTGTTAGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 8 0.27
21 22 0.73
ACGTcount: A:0.52, C:0.02, G:0.15, T:0.31
Consensus pattern (21 bp):
AAATATTGGTAAAATCATAGA
Found at i:51123815 original size:20 final size:20
Alignment explanation
Indices: 51123770--51123828 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
51123760 TAGTAAAATC
*
51123770 TTAGAAAATATTGGTAAAATG
1 TTAGAAAAT-TTGGTAAATTG
*
51123791 ATAGAAAATTTGGTAAATTG
1 TTAGAAAATTTGGTAAATTG
*
51123811 TTAG-ATATTCTGGTAAAT
1 TTAGAAAATT-TGGTAAAT
51123829 GTAACACCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 4 0.12
20 21 0.64
21 8 0.24
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (20 bp):
TTAGAAAATTTGGTAAATTG
Done.