Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 157 of 208
Found at i:51128718 original size:20 final size:20
Alignment explanation
Indices: 51128695--51128850 Score: 102
Period size: 20 Copynumber: 7.8 Consensus size: 20
51128685 CAGTAAATCA
*
51128695 TTAGAAATTTTGGTAAGTTG
1 TTAGAAATTTTGGTAAATTG
* * *
51128715 TTAGATATATTGGTAAAATG
1 TTAGAAATTTTGGTAAATTG
* * *
51128735 ATAGAAAATTTGGTAAATCG
1 TTAGAAATTTTGGTAAATTG
**
51128755 TTA-AATATTTTGGTAAATCC
1 TTAGAA-ATTTTGGTAAATTG
* * *
51128775 TTAAAAATTTCGATAAATTG
1 TTAGAAATTTTGGTAAATTG
* * **
51128795 TTAGATATTTTAGG-GAATCC
1 TTAGAAATTTT-GGTAAATTG
**
51128815 TTAGAAATAATGGTAAATCT-
1 TTAGAAATTTTGGTAAAT-TG
51128835 TTAGAAATTTTGGTAA
1 TTAGAAATTTTGGTAA
51128851 TTGATAATAT
Statistics
Matches: 100, Mismatches: 31, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
19 4 0.04
20 93 0.93
21 3 0.03
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (20 bp):
TTAGAAATTTTGGTAAATTG
Found at i:51131824 original size:22 final size:20
Alignment explanation
Indices: 51131771--51131822 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
51131761 AGTCTCATAA
* * *
51131771 ATATTGATAAATTGTTAGAT
1 ATATTGGTAAAATGTTAGAG
*
51131791 ATTTTGGTAAAATGTTAGAG
1 ATATTGGTAAAATGTTAGAG
51131811 ATATTGGTAAAA
1 ATATTGGTAAAA
51131823 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (20 bp):
ATATTGGTAAAATGTTAGAG
Found at i:51131861 original size:20 final size:20
Alignment explanation
Indices: 51131836--51131875 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51131826 TAAAAAAAAA
*
51131836 ATTGGTAAATCGTTAGATAT
1 ATTGGTAAATCATTAGATAT
*
51131856 ATTGGTAAATTATTAGATAT
1 ATTGGTAAATCATTAGATAT
51131876 TTTGATAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.17, T:0.42
Consensus pattern (20 bp):
ATTGGTAAATCATTAGATAT
Found at i:51131958 original size:20 final size:21
Alignment explanation
Indices: 51131935--51131988 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
51131925 GAAAATTAGG
*
51131935 AAATATTGGTAAAAAT-TTAA
1 AAATATTGGTAAAAATCTCAA
* *
51131955 AAATTTTGGT-AAAATCTCAT
1 AAATATTGGTAAAAATCTCAA
51131975 AAATATTGGTAAAA
1 AAATATTGGTAAAA
51131989 CGATAGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 5 0.18
20 20 0.71
21 3 0.11
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (21 bp):
AAATATTGGTAAAAATCTCAA
Found at i:51132077 original size:41 final size:39
Alignment explanation
Indices: 51131974--51132082 Score: 105
Period size: 41 Copynumber: 2.7 Consensus size: 39
51131964 TAAAATCTCA
* * *
51131974 TAAATATTGGTAAAACGATAGAAA-TTTTGGTAACTCGT
1 TAAATATTGGTAAAACGATAGAAATTTTTAGTAAATCCT
* * *
51132012 TAAATATTTTGATAAATTC-TTAGAAATTTTTAGTAAATCCT
1 TAAATA--TTGGTAAA-ACGATAGAAATTTTTAGTAAATCCT
51132053 TAAATATATCGGTAAAACGATAGAAATTTT
1 TAAATAT-T-GGTAAAACGATAGAAATTTT
51132083 GTTATTGTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
38 6 0.11
39 1 0.02
40 15 0.27
41 33 0.60
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (39 bp):
TAAATATTGGTAAAACGATAGAAATTTTTAGTAAATCCT
Found at i:51132173 original size:20 final size:20
Alignment explanation
Indices: 51132122--51132175 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
51132112 GAAAATTTGA
* *
51132122 AAATATTGATAAAATCTTAT
1 AAATATTGGTAAAACCTTAT
* *
51132142 AAATTTTTGGTAAAGCCTTAT
1 AAA-TATTGGTAAAACCTTAT
51132163 AAATATTGGTAAA
1 AAATATTGGTAAA
51132176 CCGATATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (20 bp):
AAATATTGGTAAAACCTTAT
Found at i:51132479 original size:32 final size:33
Alignment explanation
Indices: 51132420--51132488 Score: 106
Period size: 32 Copynumber: 2.1 Consensus size: 33
51132410 TTAAGATAAA
*
51132420 AAAATAGTAAGAGTTTAACATACATAATTAGAC
1 AAAATACTAAGAGTTTAACATACATAATTAGAC
51132453 AAAATACTAAGA-TTTAACATTA-ATAATTAGAC
1 AAAATACTAAGAGTTTAACA-TACATAATTAGAC
51132485 AAAA
1 AAAA
51132489 GGTTTAGCGG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 21 0.62
33 13 0.38
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.28
Consensus pattern (33 bp):
AAAATACTAAGAGTTTAACATACATAATTAGAC
Found at i:51135277 original size:29 final size:29
Alignment explanation
Indices: 51135245--51135310 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
51135235 TATTAGTGCT
**
51135245 TATTAATAAATATATTTAATATAATTAAA
1 TATTAATAAATATAACTAATATAATTAAA
* * *
51135274 TATTAATTAATTTAACTATTATAATTAAA
1 TATTAATAAATATAACTAATATAATTAAA
51135303 TATTAATA
1 TATTAATA
51135311 TTAGTAATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (29 bp):
TATTAATAAATATAACTAATATAATTAAA
Found at i:51135288 original size:16 final size:15
Alignment explanation
Indices: 51135246--51135309 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 15
51135236 ATTAGTGCTT
*
51135246 ATTAATAAATATATTTA
1 ATTAATTAA-ATA-TTA
51135263 ATATAATTAAATATTA
1 AT-TAATTAAATATTA
*
51135279 ATTAATTTAACTATT-
1 ATTAA-TTAAATATTA
51135294 A-TAATTAAATATTA
1 ATTAATTAAATATTA
51135308 AT
1 AT
51135310 ATTAGTAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
13 8 0.20
14 4 0.10
15 4 0.10
16 13 0.32
17 5 0.12
18 6 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAATTAAATATTA
Found at i:51135306 original size:13 final size:13
Alignment explanation
Indices: 51135264--51135307 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
51135254 ATATATTTAA
51135264 TATAATTAAATAT
1 TATAATTAAATAT
*
51135277 TAATTAATTTAACTAT
1 T-A-TAA-TTAAATAT
51135293 TATAATTAAATAT
1 TATAATTAAATAT
51135306 TA
1 TA
51135308 ATATTAGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 10 0.38
14 4 0.15
15 4 0.15
16 8 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATTAAATAT
Found at i:51136168 original size:42 final size:42
Alignment explanation
Indices: 51136122--51136201 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
51136112 AATCCAAGCA
51136122 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC
1 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC
* * *
51136164 CTGATTACAAGCCAAAGCCAGAAGGTGAAGTAAAACCA
1 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCA
51136202 GTGTATGGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.45, C:0.25, G:0.19, T:0.11
Consensus pattern (42 bp):
CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC
Found at i:51139146 original size:20 final size:20
Alignment explanation
Indices: 51139121--51139163 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
51139111 AACTATTTAA
** *
51139121 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
51139141 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
51139161 ATA
1 ATA
51139164 TGTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:51141628 original size:3 final size:3
Alignment explanation
Indices: 51141611--51141659 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
51141601 TTTTCTCTTA
*
51141611 TAT TAT TAAT T-T TAT TA- TAT TAAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
51141656 TAT T
1 TAT T
51141660 TCAATACTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 4 0.10
3 30 0.75
4 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:51141698 original size:14 final size:16
Alignment explanation
Indices: 51141681--51141712 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
51141671 ATGTACACGC
51141681 ATGTATGT-TA-ATAT
1 ATGTATGTATATATAT
51141695 ATGTATGTATATATAT
1 ATGTATGTATATATAT
51141711 AT
1 AT
51141713 ATATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
ATGTATGTATATATAT
Found at i:51146984 original size:14 final size:15
Alignment explanation
Indices: 51146967--51146999 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51146957 AAAGATGTGA
51146967 AAAAAAT-AAAAACG
1 AAAAAATGAAAAACG
*
51146981 AAAAAATGAAAAGCG
1 AAAAAATGAAAAACG
51146996 AAAA
1 AAAA
51147000 TGAAAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAATGAAAAACG
Found at i:51148507 original size:131 final size:132
Alignment explanation
Indices: 51148289--51148957 Score: 922
Period size: 131 Copynumber: 5.1 Consensus size: 132
51148279 GCAGTAGAGC
* * ** *
51148289 AGATTGAAGATTTCAGATCTTGTCTCCCTAAGCGGTAGTGGAGCAGATCAAAGATGGC-GAATTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAG-ATTT
* *
51148353 TACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGG
65 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGG
51148418 AAT
130 AAT
* * * * * * * * *
51148421 AGATTAAAGATTTCAAATCTTGTCTCCCTAAGTAGT-GTGGGGCAGATCAAAGATGG-TGAATTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAG-ATTT
*
51148484 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTACTTCCGC-GGGCAGCAGTG
65 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCC-CTGGGCAGCAGTG
51148548 GAAT
129 GAAT
*
51148552 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGTAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAGATTTT
*** *
51148617 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC-GTAATTCTA-TCTCCCTGGTTGGTAGTGG
66 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGG
51148680 AAT
130 AAT
** *
51148683 AGATTGAAGATCACAGATCTTATCTCCCTAGGCATTAGTGGAGTAGATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAGATTTT
* *
51148748 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTAGGCAGCAGTGG
66 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTGG
51148812 AAT
130 AAT
* *
51148815 AGATTGAAGATTACAGATCTTATCTCCCTAGGCATTAGTGGAGTAGATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAGATTTT
* * *
51148880 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTTACTTCCCTGGTAG-TGTAGT
66 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC-TACTTCCCTGG--GCAGCAGT
51148944 GGAAT
128 GGAAT
51148949 AGATTGAAG
1 AGATTGAAG
51148958 TCATGACGGC
Statistics
Matches: 490, Mismatches: 36, Indels: 20
0.90 0.07 0.04
Matches are distributed among these distances:
130 2 0.00
131 236 0.48
132 223 0.46
133 9 0.02
134 19 0.04
135 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (132 bp):
AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGCAGATTTT
ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGA
AT
Found at i:51148623 original size:44 final size:44
Alignment explanation
Indices: 51148544--51148912 Score: 238
Period size: 44 Copynumber: 8.4 Consensus size: 44
51148534 CGCGGGCAGC
* ** *
51148544 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCATT
* * * * *
51148588 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCT-GTG-GTT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAG-GCATT
* ** * * *
51148631 ACAGTGGAGTACATTGAAG-CCGTA-ATTCTATCTCCCT-GG-TTGGT
1 --AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCAT--T
* ** *
51148675 AGTGGAATAGATTGAAGATCACAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCATT
* *
51148719 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGG--TT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT-AGGCATT
* *** * * **
51148762 ACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCCTAGGCAGC
1 --AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCATT
* ** *
51148807 AGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCATT
* *
51148851 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGG--TT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT-AGGCATT
*
51148894 ACAGTGGAGTACATTGAAG
1 --AGTGGAGTAGATTGAAG
51148913 CCAGTAATTC
Statistics
Matches: 247, Mismatches: 60, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
42 17 0.07
43 40 0.16
44 135 0.55
45 54 0.22
46 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAGGCATT
Found at i:51148756 original size:263 final size:263
Alignment explanation
Indices: 51148289--51148957 Score: 931
Period size: 263 Copynumber: 2.5 Consensus size: 263
51148279 GCAGTAGAGC
* * ** * *
51148289 AGATTGAAGATTTCAGATCTTGTCTCCCTAAGCGGTAGTGGAGCAGATCAAAGATGGCGAATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGAG-ATTTT
* * * *
51148354 ACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCAGTAATTCTA-CTTCCCTGGGCA-GCAGTG
65 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTTCCCT-GGTAGGTAGTG
* ** * * * *
51148417 GAATAGATTAAAGATTTCAAATCTTGTCTCCCTAAGTAGTGTGGGGCAGATCAAAGATGGTGAAT
129 GAATAGATTGAAGATCACAAATCTTATCTCCCTAAGCAGTGTGGAGCAGATCAAAGATGGAGAAT
* * *
51148482 TTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTA-CTTCCGC-GGGCAGCA
194 TTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCC-CTAGGCAGCA
51148545 GTGGAAT
257 GTGGAAT
51148552 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGTAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGG-AGATTTT
*
51148617 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC-GTAATTCTATC-TCCCTGGTTGGTAGTGG
65 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTTCCCTGGTAGGTAGTGG
* * * * *
51148680 AATAGATTGAAGATCACAGATCTTATCTCCCTAGGCATTAGTGGAGTAGATCGAAGATGGCAG-A
130 AATAGATTGAAGATCACAAATCTTATCTCCCTAAGCAGT-GTGGAGCAGATCAAAGATGG-AGAA
51148744 TTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAGCAG
193 TTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAGCAG
51148809 TGGAAT
258 TGGAAT
* *
51148815 AGATTGAAGATTACAGATCTTATCTCCCTAGGCATTAGTGGAGTAGATCGAAGATGGCAGATTTT
1 AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGG-AGATTTT
*
51148880 ACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT-TACTTCCCTGGTAGTGTAGT
65 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT-CTTCCCTGGTAG-GTAGT
51148944 GGAATAGATTGAAG
128 GGAATAGATTGAAG
51148958 TCATGACGGC
Statistics
Matches: 364, Mismatches: 31, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
261 2 0.01
262 52 0.14
263 270 0.74
264 12 0.03
265 9 0.02
266 19 0.05
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (263 bp):
AGATTGAAGATTTCAGATCTTATCTCCCTAGGCATTAGTGGAGCAGATCGAAGATGGAGATTTTA
CCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTTCCCTGGTAGGTAGTGGA
ATAGATTGAAGATCACAAATCTTATCTCCCTAAGCAGTGTGGAGCAGATCAAAGATGGAGAATTT
TACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAGCAGTGG
AAT
Found at i:51150212 original size:3 final size:3
Alignment explanation
Indices: 51150195--51150240 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
51150185 ATTTCTCTTA
*
51150195 TAT TAT TAAT T-T TAT TA- TAT TAAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
51150240 T
1 T
51150241 TCAATACTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 27 0.73
4 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:51150279 original size:14 final size:16
Alignment explanation
Indices: 51150262--51150293 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
51150252 ATGTACACGC
51150262 ATGTATGT-TA-ATAT
1 ATGTATGTATATATAT
51150276 ATGTATGTATATATAT
1 ATGTATGTATATATAT
51150292 AT
1 AT
51150294 TTTTAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
ATGTATGTATATATAT
Found at i:51153810 original size:16 final size:16
Alignment explanation
Indices: 51153789--51153819 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51153779 TTAGAGGGAT
51153789 GACCCGCGTGTGACCC
1 GACCCGCGTGTGACCC
51153805 GACCCGCGTGTGACC
1 GACCCGCGTGTGACC
51153820 TAACCCGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.42, G:0.32, T:0.13
Consensus pattern (16 bp):
GACCCGCGTGTGACCC
Found at i:51153825 original size:16 final size:16
Alignment explanation
Indices: 51153790--51153827 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
51153780 TAGAGGGATG
*
51153790 ACCCGCGTGTGACCCG
1 ACCCGCGTGTGACCCA
*
51153806 ACCCGCGTGTGACCTA
1 ACCCGCGTGTGACCCA
51153822 ACCCGC
1 ACCCGC
51153828 CTGGAGGATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.16, C:0.45, G:0.26, T:0.13
Consensus pattern (16 bp):
ACCCGCGTGTGACCCA
Found at i:51157767 original size:32 final size:32
Alignment explanation
Indices: 51157725--51157785 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
51157715 TTTTTTGAAA
51157725 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
51157757 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
51157786 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:51157778 original size:20 final size:20
Alignment explanation
Indices: 51157744--51157785 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
51157734 AACTATTTAA
** *
51157744 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
51157764 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
51157784 AT
1 AT
51157786 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:51181541 original size:23 final size:23
Alignment explanation
Indices: 51181510--51181560 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
51181500 GTAAAAAAAA
*
51181510 CAAAGAGAAGAGAAATAAT-GTAG
1 CAAAAAGAAGA-AAATAATAGTAG
**
51181533 CAAAAAGAAGAATGTAATAGTAG
1 CAAAAAGAAGAAAATAATAGTAG
51181556 CAAAA
1 CAAAA
51181561 GTAAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.59, C:0.06, G:0.22, T:0.14
Consensus pattern (23 bp):
CAAAAAGAAGAAAATAATAGTAG
Found at i:51184439 original size:16 final size:16
Alignment explanation
Indices: 51184418--51184485 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
51184408 TTTGGTTCGC
51184418 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51184434 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
51184450 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
51184466 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51184482 TGTA
1 TGTA
51184486 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:51184741 original size:18 final size:17
Alignment explanation
Indices: 51184720--51184754 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51184710 TTATTATTAA
*
51184720 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
51184738 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51184755 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51184888 original size:15 final size:15
Alignment explanation
Indices: 51184864--51184905 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51184854 TTTAAACATA
*
51184864 ATTATTATTAAATAT
1 ATTATAATTAAATAT
51184879 ATTATAATTAAAT-T
1 ATTATAATTAAATAT
*
51184893 A-TATAATTTAATA
1 ATTATAATTAAATA
51184906 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:51184896 original size:155 final size:156
Alignment explanation
Indices: 51184608--51184921 Score: 542
Period size: 155 Copynumber: 2.0 Consensus size: 156
51184598 TAGAATACCC
* * *
51184608 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTT
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
*
51184673 TATCAACAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAAT
66 TATCAACAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
51184738 ATATAATTTAATAAAATTCTTAATAA
131 ATATAATTTAATAAAATTCTTAATAA
*
51184764 TTAGCAGAAATTTGTTTTGGTAAATTA-T-TTATTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATT-
* *
51184827 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAT
65 ATATCAACAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
51184892 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
51184919 TTA
1 TTA
51184922 ATATTCTTAC
Statistics
Matches: 150, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
154 33 0.22
155 92 0.61
156 25 0.17
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTATTATTGTTATTTAAATTTTAATAAGATTATTA
TATCAACAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:51184994 original size:120 final size:120
Alignment explanation
Indices: 51184853--51185150 Score: 451
Period size: 120 Copynumber: 2.5 Consensus size: 120
51184843 ATTTAATCAT
* *
51184853 ATTTAAACATAATTATTATTAAATATATTATAATTAAATTATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTA-TATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
51184918 ATTAATATTCTTACATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
65 ATTAATATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
51184975 A-TT-AACATAATTATCATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTAT-ATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
51185038 ATTATTATTCTTATATGAATTTATTCAAATCATAATATATGATACTATAAAAGAAA
65 ATTAATATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
*
51185094 ATTTGAA-ATAATTAATATTAAATATATT-TAAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATT-ATATTAAATATATTAT-AATTAAAATATATAATTTAATAAAATT
51185151 TAAAATAATT
Statistics
Matches: 164, Mismatches: 7, Indels: 12
0.90 0.04 0.07
Matches are distributed among these distances:
119 5 0.03
120 152 0.93
121 6 0.04
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATTTGAACATAATTATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TTAATATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:51185023 original size:14 final size:15
Alignment explanation
Indices: 51184974--51185025 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
51184964 GTAAAATATA
51184974 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
51184989 CATTAAATATATTAT
1 AATTAAATATATTAT
51185004 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
51185017 AATTTAATA
1 AATTAAATA
51185026 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:51185249 original size:47 final size:46
Alignment explanation
Indices: 51185198--51185341 Score: 127
Period size: 47 Copynumber: 3.1 Consensus size: 46
51185188 TTGTATAATT
*
51185198 TAAAATAATAAATATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTAATATTA-ATATAATTTAATAATAATATATAATTTCA
** * ** * *
51185245 TAAAATTCTTAATAATAA-AT--TTTCTTATATGAATTTATACAATT--
1 TAAAATAATTAATATTAATATAATTTAATA-AT-AATATATA-ATTTCA
*
51185289 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTAATATT-AATATAATTTAATAATAATATATAATTTCA
51185336 TAAAAT
1 TAAAAT
51185342 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
43 5 0.07
44 15 0.21
45 14 0.19
46 12 0.17
47 21 0.29
48 5 0.07
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (46 bp):
TAAAATAATTAATATTAATATAATTTAATAATAATATATAATTTCA
Found at i:51185259 original size:101 final size:93
Alignment explanation
Indices: 51185093--51185373 Score: 304
Period size: 91 Copynumber: 3.0 Consensus size: 93
51185083 TATAAAAGAA
* * *
51185093 AATTTGAAATAATTAATATTAAATAT-ATTTAAATTAA-AATATATGATTTAATAAAATT-TAAA
1 AATTTAAAATAATTAATATTAAATATAATTT-AA-TAATAATATATAATTTCATAAAATTCT---
* * * *
51185155 ATAATTATAACTAATAAATTATATTTTATGAATTTGTAT
61 -T-A--ATAA-T-ATAAATTTTATTATATGAATTTATAC
* *
51185194 AATTTAAAATAATAAATATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTAAT-
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
*
51185258 A-ATAAATTTTCTTATATGAATTTATAC
66 ATATAAATTTTATTATATGAATTTATAC
*
51185285 AATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
* *
51185350 ATA-AAATGTTCTTATATGAATTTA
66 ATATAAATTTTATTATATGAATTTA
51185374 CTAAAATCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
91 82 0.51
92 21 0.13
93 1 0.01
94 1 0.01
95 2 0.01
97 1 0.01
98 1 0.01
100 3 0.02
101 44 0.27
102 5 0.03
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (93 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
ATATAAATTTTATTATATGAATTTATAC
Found at i:51185261 original size:91 final size:91
Alignment explanation
Indices: 51185166--51185373 Score: 310
Period size: 91 Copynumber: 2.3 Consensus size: 91
51185156 TAATTATAAC
* * * *
51185166 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAATAAATATTACATATAATTTAATAAT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
51185231 AATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
* * *
51185257 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
*
51185322 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
51185348 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
51185374 CTAAAATCAA
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
91 87 0.81
92 19 0.18
93 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:51185333 original size:44 final size:43
Alignment explanation
Indices: 51185147--51185333 Score: 128
Period size: 44 Copynumber: 4.1 Consensus size: 43
51185137 GATTTAATAA
* * * *
51185147 AATTTAAAATAATTATAACTAATAAAT-TATATTTTATGAATTTGTAT
1 AATTTAAAATAA-T-TAA-TATTAAATATA-ATTTAAT-AATATATAT
* *
51185194 AATTTAAAATAATAAATATTACATATAATTTAATAATAATATAT
1 AATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATATAT
** * * * *
51185238 AATTTCATAAAATTCTTAATAATAAAT-T-TTCTTATATGAATTTATAC
1 AA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATATAT
51185285 AATTTAAAATAATTAATATTAAATATAATTTAATAATGATATAT
1 AATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATATAT
51185329 AATTT
1 AATTT
51185334 CATAAAATTC
Statistics
Matches: 109, Mismatches: 20, Indels: 25
0.71 0.13 0.16
Matches are distributed among these distances:
43 6 0.06
44 46 0.42
45 11 0.10
46 8 0.07
47 35 0.32
48 3 0.03
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (43 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATATATAT
Found at i:51185348 original size:47 final size:47
Alignment explanation
Indices: 51185216--51185354 Score: 146
Period size: 47 Copynumber: 3.0 Consensus size: 47
51185206 TAAATATTAC
*
51185216 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
51185263 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
51185307 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
51185354 A
1 A
51185355 ATGTTCTTAT
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
44 21 0.30
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:51188498 original size:19 final size:19
Alignment explanation
Indices: 51188474--51188513 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
51188464 TAAAATGAAG
51188474 AATGAAGATTTGGTTTAAT
1 AATGAAGATTTGGTTTAAT
51188493 AATGAAGATTTGGTTTAAT
1 AATGAAGATTTGGTTTAAT
51188512 AA
1 AA
51188514 ATAAAATGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (19 bp):
AATGAAGATTTGGTTTAAT
Found at i:51188520 original size:51 final size:48
Alignment explanation
Indices: 51188450--51188593 Score: 181
Period size: 51 Copynumber: 3.0 Consensus size: 48
51188440 AAGGTTTTCT
51188450 AATTTCAAAATAAATAAAATGAAGAATGAAGATTTGGTTTAATAATGA
1 AATTTCAAAATAAATAAAATGAAGAATGAAGATTTGGTTTAATAATGA
*** *
51188498 AGATTTGGTTTAATAAATAAAATGAAGAATGAAGATTTGGTTT--T-CT--
1 A-ATTT--CAAAATAAATAAAATGAAGAATGAAGATTTGGTTTAATAATGA
*
51188544 AATTTCAAAATAAATAAAATGAAAAATGAAGATTTGGTTTAATAATGA
1 AATTTCAAAATAAATAAAATGAAGAATGAAGATTTGGTTTAATAATGA
51188592 AA
1 AA
51188594 ATGAAGTTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
43 31 0.39
45 5 0.06
46 2 0.03
48 4 0.05
49 5 0.06
51 32 0.41
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.33
Consensus pattern (48 bp):
AATTTCAAAATAAATAAAATGAAGAATGAAGATTTGGTTTAATAATGA
Found at i:51188911 original size:13 final size:13
Alignment explanation
Indices: 51188893--51188917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51188883 ATCAAATTTG
51188893 TATGTACTCTTTA
1 TATGTACTCTTTA
51188906 TATGTACTCTTT
1 TATGTACTCTTT
51188918 CACTAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (13 bp):
TATGTACTCTTTA
Found at i:51191764 original size:27 final size:26
Alignment explanation
Indices: 51191726--51191828 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 26
51191716 CATAACAGTC
51191726 ATTTTACCCTATGGGGGTATTTTAGTT
1 ATTTTACCCTATGGGGGTATTTT-GTT
* *
51191753 ATTTTACCCTATGGAGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTT-TGTT
*
51191780 ATTTTACCCTATGGGGGTATTTTGATC
1 ATTTTACCCTATGGGGGTATTTTG-TT
*
51191807 ATTTTACCCTATGAGGGTATTT
1 ATTTTACCCTATGGGGGTATTT
51191829 CGATGCAGAT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.19, C:0.14, G:0.21, T:0.46
Consensus pattern (26 bp):
ATTTTACCCTATGGGGGTATTTTGTT
Found at i:51191811 original size:54 final size:54
Alignment explanation
Indices: 51191726--51191830 Score: 169
Period size: 54 Copynumber: 1.9 Consensus size: 54
51191716 CATAACAGTC
*
51191726 ATTTTACCCTATGGGGGTATTTTAGTTATTTTACCCTATG-GAGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTTAGTCATTTTACCCTATGAG-GGTATTTCGGTT
51191780 ATTTTACCCTATGGGGGTATTTT-GATCATTTTACCCTATGAGGGTATTTCG
1 ATTTTACCCTATGGGGGTATTTTAG-TCATTTTACCCTATGAGGGTATTTCG
51191831 ATGCAGATAT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
53 1 0.02
54 46 0.96
55 1 0.02
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.45
Consensus pattern (54 bp):
ATTTTACCCTATGGGGGTATTTTAGTCATTTTACCCTATGAGGGTATTTCGGTT
Found at i:51192494 original size:24 final size:23
Alignment explanation
Indices: 51192467--51192517 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
51192457 TCCCCAAATC
*
51192467 CCAATACTCTCTCCTCAAATCTCT
1 CCAATA-TCCCTCCTCAAATCTCT
*
51192491 CCAAATATCCCTCCTCAATTCTCT
1 CC-AATATCCCTCCTCAAATCTCT
51192515 CCA
1 CCA
51192518 TGACCAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 19 0.79
25 4 0.17
ACGTcount: A:0.25, C:0.43, G:0.00, T:0.31
Consensus pattern (23 bp):
CCAATATCCCTCCTCAAATCTCT
Found at i:51193379 original size:17 final size:18
Alignment explanation
Indices: 51193341--51193379 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
51193331 AAAAAAACTG
* *
51193341 AAAAGAAATATAAAACCT
1 AAAAGAAATAGAAAACCA
51193359 AAAAGAAA-AGAAAACCA
1 AAAAGAAATAGAAAACCA
51193376 AAAA
1 AAAA
51193380 CTAAATTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAAGAAATAGAAAACCA
Found at i:51198084 original size:28 final size:28
Alignment explanation
Indices: 51198044--51198203 Score: 160
Period size: 28 Copynumber: 5.7 Consensus size: 28
51198034 TAACAAAACT
*
51198044 GTGTGGGCCTTAGCCCAATACAGTAACA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
*
51198072 GTGTGGGGCTTAGCCCAATACAGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * * *
51198100 GTGTGAGCCTTAGCCTAACACGGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * * *
51198128 GTGT-GGCCTTTGGCCCAAAATAATATCA
1 GTGTGGGCC-TTAGCCCAATACAGTATCA
* * *
51198156 GTGTGGGCTTTAGCCCAAAATAGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * *
51198184 GTCTGGGCTTTAGCCTAATA
1 GTGTGGGCCTTAGCCCAATA
51198204 TAATAATAGT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 3 0.03
28 104 0.95
29 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (28 bp):
GTGTGGGCCTTAGCCCAATACAGTATCA
Found at i:51198207 original size:56 final size:56
Alignment explanation
Indices: 51198044--51198208 Score: 179
Period size: 56 Copynumber: 2.9 Consensus size: 56
51198034 TAACAAAACT
* * * *
51198044 GTGTGGGCCTTAGCCCAATACAGTAACAGTGTGGGGC-TTAGCCCAATACAGTATCA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGT-GGGCTTTAGCCCAATATAATATCA
* * * * * * *
51198100 GTGTGAGCCTTAGCCTAACACGGTATCAGTGTGGCCTTTGGCCCAAAATAATATCA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATATCA
* * * *
51198156 GTGTGGGCTTTAGCCCAAAATAGTATCAGTCTGGGCTTTAGCCTAATATAATA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATA
51198209 ATAGTACAGT
Statistics
Matches: 87, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 3 0.03
56 84 0.97
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (56 bp):
GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATATCA
Found at i:51198620 original size:27 final size:27
Alignment explanation
Indices: 51198590--51198753 Score: 172
Period size: 27 Copynumber: 6.1 Consensus size: 27
51198580 GGGTATACCA
* *
51198590 GTCATTTTACCCCATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
51198617 GTCA-TTCACCTTAT-AGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
* * *
51198643 ATCATTCTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCG
* **
51198670 GTCATTTTACCCTATGAGGTTATTTTT
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
51198697 GTCATTTTACCCTATTATGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
51198724 GTCATTTTACCCT-TCGAGGGTATTTCG
1 GTCATTTTACCCTAT-GAGGGTATTTCG
51198751 GTC
1 GTC
51198754 CAGATATCGA
Statistics
Matches: 112, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 21 0.19
27 90 0.80
28 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:51200611 original size:28 final size:28
Alignment explanation
Indices: 51200571--51200730 Score: 160
Period size: 28 Copynumber: 5.7 Consensus size: 28
51200561 TAACAAAACT
*
51200571 GTGTGGGCCTTAGCCCAATACAGTAACA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
*
51200599 GTGTGGGGCTTAGCCCAATACAGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * * *
51200627 GTGTGAGCCTTAGCCTAACACGGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * * *
51200655 GTGT-GGCCTTTGGCCCAAAATAATATCA
1 GTGTGGGCC-TTAGCCCAATACAGTATCA
* * *
51200683 GTGTGGGCTTTAGCCCAAAATAGTATCA
1 GTGTGGGCCTTAGCCCAATACAGTATCA
* * *
51200711 GTCTGGGCTTTAGCCTAATA
1 GTGTGGGCCTTAGCCCAATA
51200731 TAATAATAGT
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
27 3 0.03
28 104 0.95
29 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (28 bp):
GTGTGGGCCTTAGCCCAATACAGTATCA
Found at i:51200734 original size:56 final size:56
Alignment explanation
Indices: 51200571--51200735 Score: 179
Period size: 56 Copynumber: 2.9 Consensus size: 56
51200561 TAACAAAACT
* * * *
51200571 GTGTGGGCCTTAGCCCAATACAGTAACAGTGTGGGGC-TTAGCCCAATACAGTATCA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGT-GGGCTTTAGCCCAATATAATATCA
* * * * * * *
51200627 GTGTGAGCCTTAGCCTAACACGGTATCAGTGTGGCCTTTGGCCCAAAATAATATCA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATATCA
* * * *
51200683 GTGTGGGCTTTAGCCCAAAATAGTATCAGTCTGGGCTTTAGCCTAATATAATA
1 GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATA
51200736 ATAGTACAGT
Statistics
Matches: 87, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 3 0.03
56 84 0.97
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (56 bp):
GTGTGGGCCTTAGCCCAAAACAGTATCAGTGTGGGCTTTAGCCCAATATAATATCA
Found at i:51201225 original size:27 final size:27
Alignment explanation
Indices: 51201118--51201251 Score: 148
Period size: 27 Copynumber: 5.0 Consensus size: 27
51201108 TATACAAGTT
* *
51201118 ATTTTACCCCATGGGGGTATTTCGGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
* * *
51201145 A-TTCACCTTAT-AGGGGTATTTCAGTC
1 ATTTTACCCTATGA-GGGTATTTCGGTC
* *
51201171 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
* *
51201198 ATTTTACCCTATGAGGTTATTTTGGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
51201225 ATTTTACCCT-TCGAGGGTATTTCGGTC
1 ATTTTACCCTAT-GAGGGTATTTCGGTC
51201252 CAGATATCGA
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 21 0.24
27 68 0.76
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATGAGGGTATTTCGGTC
Found at i:51202900 original size:28 final size:28
Alignment explanation
Indices: 51202860--51202989 Score: 143
Period size: 28 Copynumber: 4.6 Consensus size: 28
51202850 TAACAAAACT
* * *
51202860 GTGTGGGCCTTAGCCCAATACAGTATCA
1 GTGTGGGCTTTAGCCTAAAACAGTATCA
* * * *
51202888 GTGTGAGCCTTAGCCTAACACGGTATCA
1 GTGTGGGCTTTAGCCTAAAACAGTATCA
* * *
51202916 GTGTGGGCTTTGGCCTAAAATAATATCA
1 GTGTGGGCTTTAGCCTAAAACAGTATCA
* *
51202944 GTGTGGGCTTTAGCCCAAAATAGTATCA
1 GTGTGGGCTTTAGCCTAAAACAGTATCA
*
51202972 GTCTGGGCTTTAGCCTAA
1 GTGTGGGCTTTAGCCTAA
51202990 TATAATAATA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 86 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (28 bp):
GTGTGGGCTTTAGCCTAAAACAGTATCA
Found at i:51203406 original size:27 final size:27
Alignment explanation
Indices: 51203376--51203512 Score: 154
Period size: 27 Copynumber: 5.1 Consensus size: 27
51203366 GGGTATACCA
* *
51203376 GTCATTTTACCCCATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* * *
51203403 GTCA-TTCACCTTAT-AGGGGTATTTCA
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
51203429 GTCATTTTACCCTATGAGGTTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
51203456 GTCATTTTACCCTATGAGGTTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCG
51203483 GTCATTTTACCCT-TCGAGGGTATTTCG
1 GTCATTTTACCCTAT-GAGGGTATTTCG
51203510 GTC
1 GTC
51203513 CAGATATCGA
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.22
27 72 0.77
28 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:51203772 original size:20 final size:19
Alignment explanation
Indices: 51203743--51203784 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
51203733 AGCCTACTGA
*
51203743 GCCCACATGGCCCATTTCG
1 GCCCACATGGCCCATTACG
51203762 GCCCAACATGGCCCATTACG
1 GCCC-ACATGGCCCATTACG
51203782 GCC
1 GCC
51203785 TAGGCTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.19, C:0.43, G:0.21, T:0.17
Consensus pattern (19 bp):
GCCCACATGGCCCATTACG
Found at i:51206223 original size:38 final size:38
Alignment explanation
Indices: 51206172--51206364 Score: 226
Period size: 38 Copynumber: 5.1 Consensus size: 38
51206162 GGACTTGTAT
** * *
51206172 TGTTATTCGGGCTTTGTGCTTAGCAGGCTTAGTGCCAG
1 TGTTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
*
51206210 TATTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
1 TGTTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
* * * *
51206248 TGTTATTAAGGCTTCGTGCCTAGTAGGCTTCGTGCCGG
1 TGTTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
* *
51206286 TGTTATTCAGGCATTGTGCCTAGTAGGCATT-GTGCCAG
1 TGTTATTTAGGCTTTGTGCCTAGTAGGC-TTAGTGCCAG
* * ** *
51206324 TGTTATTTAAGCTTTGTGCTTAACAGGCTTAGTGCCGG
1 TGTTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
51206362 TGT
1 TGT
51206365 ATTAAAAAGT
Statistics
Matches: 132, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
37 2 0.02
38 128 0.97
39 2 0.02
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (38 bp):
TGTTATTTAGGCTTTGTGCCTAGTAGGCTTAGTGCCAG
Found at i:51206303 original size:76 final size:76
Alignment explanation
Indices: 51206172--51206364 Score: 255
Period size: 76 Copynumber: 2.5 Consensus size: 76
51206162 GGACTTGTAT
** * * * *
51206172 TGTTATTCGGGCTTTGTGCTTAGCAGGCTTAGTGCCAGTATTATTTAGGCTTTGTGCCTAGTAGG
1 TGTTATTAAGGCTTTGTGCTTAGCAGGCTTAGTGCCGGTGTTATTCAGGCATTGTGCCTAGTAGG
51206237 C-TTAGTGCCAG
66 CATT-GTGCCAG
* * * *
51206248 TGTTATTAAGGCTTCGTGCCTAGTAGGCTTCGTGCCGGTGTTATTCAGGCATTGTGCCTAGTAGG
1 TGTTATTAAGGCTTTGTGCTTAGCAGGCTTAGTGCCGGTGTTATTCAGGCATTGTGCCTAGTAGG
51206313 CATTGTGCCAG
66 CATTGTGCCAG
*
51206324 TGTTATTTAA-GCTTTGTGCTTAACAGGCTTAGTGCCGGTGT
1 TGTTA-TTAAGGCTTTGTGCTTAGCAGGCTTAGTGCCGGTGT
51206365 ATTAAAAAGT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
76 94 0.94
77 6 0.06
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (76 bp):
TGTTATTAAGGCTTTGTGCTTAGCAGGCTTAGTGCCGGTGTTATTCAGGCATTGTGCCTAGTAGG
CATTGTGCCAG
Found at i:51216770 original size:40 final size:40
Alignment explanation
Indices: 51216693--51216770 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
51216683 TTATCCTAGA
* * *
51216693 AAAAAAGAATTTAAAAAGAGGAGAATATAAGCTTGGGTTG
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTG
*
51216733 AAAAAAGACTTTAAAAAGAGGAGAAGATAAACATGGGT
1 AAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGT
51216771 AGTTGGATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.53, C:0.04, G:0.24, T:0.19
Consensus pattern (40 bp):
AAAAAAGAATTTAAAAAGAGGAGAAGATAAACATGGGTTG
Found at i:51220368 original size:47 final size:47
Alignment explanation
Indices: 51220290--51220778 Score: 825
Period size: 47 Copynumber: 10.4 Consensus size: 47
51220280 CCCTTCGGGA
* * * * * * *
51220290 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51220337 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51220384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51220431 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51220478 CTTATCACACATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51220525 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51220572 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51220619 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51220666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51220713 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51220760 CTTATCACATATATACACT
1 CTTATCACATATATACACT
51220779 GTGTTGGCTG
Statistics
Matches: 419, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 419 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51222266 original size:37 final size:37
Alignment explanation
Indices: 51222205--51222350 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
51222195 TACGTATGAT
* *
51222205 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
51222240 CACCTATCACTTTGTTTCTTGATCAGAAAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
51222277 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
51222314 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
51222351 TAAAGCTATC
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 90 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:51222367 original size:46 final size:46
Alignment explanation
Indices: 51222314--51222582 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
51222304 TAAGTGTAGC
* **
51222314 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
51222360 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
51222406 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
51222458 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** * *
51222504 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAACCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
51222556 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
51222583 AGTACTCAAA
Statistics
Matches: 198, Mismatches: 13, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
46 112 0.57
48 1 0.01
49 2 0.01
50 1 0.01
52 82 0.41
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:51222433 original size:52 final size:52
Alignment explanation
Indices: 51222357--51222576 Score: 290
Period size: 52 Copynumber: 4.3 Consensus size: 52
51222347 TAGCTAAAGC
* *
51222357 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
51222410 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
51222462 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** * *
51222508 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAACCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
51222560 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
51222577 ATCAGAAGTA
Statistics
Matches: 147, Mismatches: 13, Indels: 14
0.84 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 85 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:51222479 original size:98 final size:98
Alignment explanation
Indices: 51222314--51222582 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
51222304 TAAGTGTAGC
* * *
51222314 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
51222379 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
51222413 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
51222478 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
51222511 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAACCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
51222576 GATCAGA
66 GATCAGA
51222583 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 150 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:51227311 original size:40 final size:40
Alignment explanation
Indices: 51227248--51227430 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
51227238 CCAGCATGAT
* * *
51227248 TGCTCTTCGGGATTTAACACGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* **
51227288 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
* * * *
51227328 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACAAA
* *
51227369 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACAAA
51227410 -GC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
51227431 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 94 0.79
41 22 0.18
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
Found at i:51227777 original size:29 final size:29
Alignment explanation
Indices: 51227738--51227816 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
51227728 CTTAATAATC
*
51227738 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
51227768 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
51227797 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51227817 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:51227859 original size:43 final size:43
Alignment explanation
Indices: 51227798--51227943 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
51227788 TGCATTTCAA
51227798 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
51227841 GCCCGCACACTTAGTGCCAATCTCACAATCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
51227884 GCCTGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
51227927 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
51227944 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:51229849 original size:37 final size:37
Alignment explanation
Indices: 51229799--51229873 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
51229789 TTATTACGAA
* *
51229799 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAGTC-CCACACGAAGTCATCGG
*
51229836 GTCTTACCCGGACAAAAGTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
51229873 G
1 G
51229874 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
Found at i:51230074 original size:47 final size:47
Alignment explanation
Indices: 51229996--51230390 Score: 673
Period size: 47 Copynumber: 8.4 Consensus size: 47
51229986 CCCTTCGGGT
* * * * * * *
51229996 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51230043 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51230090 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51230137 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51230184 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51230231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51230278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51230325 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51230372 CTTATCACATATATACACT
1 CTTATCACATATATACACT
51230391 GTGTTGGCTG
Statistics
Matches: 329, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 329 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51242298 original size:30 final size:29
Alignment explanation
Indices: 51242264--51242327 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
51242254 TTAGTAAAGG
51242264 TAAAATTACACTTTAGTCCCCTT-AAAATTA
1 TAAAATTACA-TTTAGT-CCCTTAAAAATTA
* *
51242294 TAAAAATTTCATTTAGTCCTTTAAAAATTA
1 T-AAAATTACATTTAGTCCCTTAAAAATTA
51242324 TAAA
1 TAAA
51242328 GATATAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.23
30 15 0.50
31 8 0.27
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (29 bp):
TAAAATTACATTTAGTCCCTTAAAAATTA
Found at i:51243959 original size:38 final size:38
Alignment explanation
Indices: 51243864--51243962 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 38
51243854 AATTTTAGCT
* *** * * *
51243864 CTTATGAGCAAAATAATTTGTTATCGGATGGAATAACT
1 CTTATGAGCAAACTAGCATGTTATCAGATGAAATAACC
* *
51243902 CTTATGGGTAAACTAGCATGTTATCAGATGAAATAACC
1 CTTATGAGCAAACTAGCATGTTATCAGATGAAATAACC
* *
51243940 CTTATGAGCAAATTGGCATGTTA
1 CTTATGAGCAAACTAGCATGTTA
51243963 CAGTTGGTTA
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (38 bp):
CTTATGAGCAAACTAGCATGTTATCAGATGAAATAACC
Found at i:51251800 original size:74 final size:75
Alignment explanation
Indices: 51251601--51251801 Score: 280
Period size: 75 Copynumber: 2.7 Consensus size: 75
51251591 CAGTGGATTT
* * *
51251601 AGCACTTAGCAACCACCAGTGAGTCGGAGAATCAACACTTACCAACCCCTATCACATTCAAAGAT
1 AGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCT-TCACATTCAAAGAT
*
51251666 ATGGTGGAATC
65 ACGGTGGAATC
* * * * *
51251677 AACACTTAGCAACCACCAATGATTC-GGGAATCAGCACTTAGAAACCCCCTTCACATTTAAAG-T
1 AGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAA-CCCCTTCACATTCAAAGAT
51251740 ACGGTGGAATC
65 ACGGTGGAATC
*
51251751 AGCACTTAGCAACCACCAATGAGTCGGGGAATCAATACTTAGCAACCCCTT
1 AGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTT
51251802 GGGGAATCAG
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
74 40 0.37
75 42 0.39
76 27 0.25
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (75 bp):
AGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTCACATTCAAAGATA
CGGTGGAATC
Found at i:51251816 original size:26 final size:26
Alignment explanation
Indices: 51251776--51251825 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
51251766 CCAATGAGTC
*
51251776 GGGGAATCAATACTTAGCAACCCCTT
1 GGGGAATCAACACTTAGCAACCCCTT
*
51251802 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAACACTTAGCAACCCC
51251826 CTTTATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (26 bp):
GGGGAATCAACACTTAGCAACCCCTT
Found at i:51251902 original size:18 final size:18
Alignment explanation
Indices: 51251879--51251913 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51251869 GAACCCATAT
* *
51251879 TTTCAACACTTTACCACC
1 TTTCAAAACTTAACCACC
51251897 TTTCAAAACTTAACCAC
1 TTTCAAAACTTAACCAC
51251914 ATTTTTATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (18 bp):
TTTCAAAACTTAACCACC
Found at i:51259049 original size:33 final size:33
Alignment explanation
Indices: 51259004--51259131 Score: 105
Period size: 33 Copynumber: 3.6 Consensus size: 33
51258994 AAGATATGGT
*
51259004 GGAATCAGCACTTAGCAACCACCAATGATTCGG
1 GGAATCAACACTTAGCAACCACCAATGATTCGG
* * *
51259037 GGAATCAACACTTAGAAACC-CCTTTAACATTTAAAGTACGG
1 GGAATCAACACTTAGCAACCACC----A-A--T-GA-TTCGG
* *
51259078 TGGAATCAGCACTTAGCAACCACCAATGAGTCGG
1 -GGAATCAACACTTAGCAACCACCAATGATTCGG
51259112 GGAATCAACACTTAGCAACC
1 GGAATCAACACTTAGCAACC
51259132 CCTTGGGGGA
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
32 2 0.03
33 37 0.50
34 3 0.04
35 1 0.01
36 2 0.03
37 1 0.01
38 1 0.01
39 2 0.03
40 1 0.01
41 4 0.05
42 18 0.24
43 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (33 bp):
GGAATCAACACTTAGCAACCACCAATGATTCGG
Found at i:51259135 original size:75 final size:76
Alignment explanation
Indices: 51258925--51259135 Score: 320
Period size: 75 Copynumber: 2.8 Consensus size: 76
51258915 CAACTGTTAC
* * * *
51258925 CGGTGGATTCAGCACTTAGCAACCACCAGTGAGTCGGGGAATCAACACTTA-CTAA-CCCTGTCA
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGC-AACCCCTTTAA
51258988 CATTCAAAGATA
65 CATTCAAAGATA
* * *
51259000 TGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAACACTTAGAAACCCCTTTAAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTAAC
*
51259065 ATTTAAAG-TA
66 ATTCAAAGATA
51259075 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTT
51259136 GGGGGAATCA
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
75 109 0.89
76 14 0.11
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (76 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTAAC
ATTCAAAGATA
Found at i:51259237 original size:18 final size:18
Alignment explanation
Indices: 51259214--51259252 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
51259204 GAACCCATAT
* *
51259214 TTTCAACACTTTACCACA
1 TTTCAAAACTTAACCACA
51259232 TTTCAAAACTTAACCACA
1 TTTCAAAACTTAACCACA
51259250 TTT
1 TTT
51259253 TTAGAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (18 bp):
TTTCAAAACTTAACCACA
Found at i:51259523 original size:30 final size:30
Alignment explanation
Indices: 51259489--51259546 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
51259479 TAATCCACCA
*
51259489 CCCAAATTTTTGAAAAATTACAATTTTGCC
1 CCCAAACTTTTGAAAAATTACAATTTTGCC
* * *
51259519 CCCAAACTTTTGCATAATTACACTTTTG
1 CCCAAACTTTTGAAAAATTACAATTTTG
51259547 TCCCTAAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (30 bp):
CCCAAACTTTTGAAAAATTACAATTTTGCC
Found at i:51282370 original size:12 final size:12
Alignment explanation
Indices: 51282353--51282391 Score: 64
Period size: 11 Copynumber: 3.4 Consensus size: 12
51282343 AGTGATTGTG
51282353 AAAAATTTTGAA
1 AAAAATTTTGAA
51282365 AAAAATTTT-AA
1 AAAAATTTTGAA
51282376 AAAAA-TTTGAA
1 AAAAATTTTGAA
51282387 AAAAA
1 AAAAA
51282392 AATTTGTACA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 3 0.12
11 14 0.54
12 9 0.35
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (12 bp):
AAAAATTTTGAA
Found at i:51288451 original size:27 final size:26
Alignment explanation
Indices: 51288421--51288473 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
51288411 CTTTTATATT
*
51288421 TTTATGGT-CATTTTCTTTGATTATTTC
1 TTTAT-GTACATTTTCATT-ATTATTTC
*
51288448 TTTATTTACATTTTCATTATTATTTC
1 TTTATGTACATTTTCATTATTATTTC
51288474 GAAAGAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.19, C:0.11, G:0.06, T:0.64
Consensus pattern (26 bp):
TTTATGTACATTTTCATTATTATTTC
Found at i:51288849 original size:108 final size:109
Alignment explanation
Indices: 51288621--51288959 Score: 549
Period size: 108 Copynumber: 3.1 Consensus size: 109
51288611 TACGCATACT
*
51288621 AATATCCTTTTAAAAGATTTCAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGC
1 AATATCCTTTTAAAA-ATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGC
*
51288686 CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAACCA
65 CCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
**
51288731 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTAAGAAAACGTGCC
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
*
51288796 C-AATGTGTTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
66 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
* *
51288839 AATATTCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCC
1 AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
* * *
51288904 CTAATGTGCTGAGTTTTGA--TTTCTCATTCGACCAAATAGCCA
66 CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
*
51288946 AATATCCTCTTAAA
1 AATATCCTTTTAAA
51288960 TCGTAATCCA
Statistics
Matches: 213, Mismatches: 15, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
107 34 0.16
108 102 0.48
109 62 0.29
110 15 0.07
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (109 bp):
AATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCC
CTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATAGCCA
Found at i:51294261 original size:45 final size:45
Alignment explanation
Indices: 51294222--51294660 Score: 272
Period size: 44 Copynumber: 9.9 Consensus size: 45
51294212 AAGATAGTAG
* * * * *
51294222 ATCTTGTCTTCCTTTATTGGCAGCAAAGTAGATCGAAGATAACAA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
* * *
51294267 ATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGA-CACCA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
** * * *
51294311 GCCTTGCCTTCCTGTACT-AGCAGCGAAGCAGA-CTGAAGATAGCAG
1 ATCTTGCCTTCCTGTACTGA-CAGCAAAGCAGATC-GAAGATAACAA
* * * *
51294356 ATCTTGCCTTCTTGTACTGATAGCGAAGCAGAT-TAA-A-AACACCA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACA--A
* * * ** * *
51294400 ACCTTACCTTCCTGTACTGGCAGCGGAGTAGA-CTGAAGA-AAGAA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATC-GAAGATAACAA
* ** * *
51294444 GTCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGA-CAC-C
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
* * * * * *
51294487 AGCGTTGCCTTCCTGTACTGGCAGCAGAGCA-AACTGAAGATAGCAG
1 ATC-TTGCCTTCCTGTACTGACAGCAAAGCAGATC-GAAGATAACAA
* * * * * * *
51294533 ATCTTGCATTCCTCTACTAACAGCGAAGCAAATCGAAGA-CACCA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
** * * *
51294577 GCCTTGCCTTCCTGTACTGACAGCAGAGAAGATTGAAGATAACAA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
* * * *
51294622 ATCTCGTCTTCCTGTACTAACAGCGAAGCAGATCGAAGA
1 ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGA
51294661 CACCATAGTT
Statistics
Matches: 294, Mismatches: 83, Indels: 34
0.72 0.20 0.08
Matches are distributed among these distances:
42 3 0.01
43 6 0.02
44 153 0.52
45 123 0.42
46 9 0.03
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (45 bp):
ATCTTGCCTTCCTGTACTGACAGCAAAGCAGATCGAAGATAACAA
Found at i:51294324 original size:44 final size:44
Alignment explanation
Indices: 51294269--51294665 Score: 338
Period size: 44 Copynumber: 9.0 Consensus size: 44
51294259 GATAACAAAT
51294269 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
* * *
51294313 CTTGCCTTCCTGTACT-AGCAGCGAAGCAGA-CTGAAGATAGCAGAT
1 CTTGCCTTCCTGTACTGA-CAGCGAAGCAGATC-GAAGACACCAG-C
* * ** * *
51294358 CTTGCCTTCTTGTACTGATAGCGAAGCAGATTAAAAACACCAAC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
* * * * * ** *
51294402 CTTACCTTCCTGTACTGGCAGCGGAGTAGA-CTGAAGAAAGAAGT
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATC-GAAGACACCAGC
*
51294446 CTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
* * * * * *
51294490 GTTGCCTTCCTGTACTGGCAGC-AGAGCA-AACTGAAGATAGCAGAT
1 CTTGCCTTCCTGTACTGACAGCGA-AGCAGATC-GAAGACACCAG-C
* * * *
51294535 CTTGCATTCCTCTACTAACAGCGAAGCAAATCGAAGACACCAGC
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
* * * * **
51294579 CTTGCCTTCCTGTACTGACAGC-AGAGAAGATTGAAGATAACAAAT
1 CTTGCCTTCCTGTACTGACAGCGA-AGCAGATCGAAGA-CACCAGC
* * *
51294624 CTCGTCTTCCTGTACTAACAGCGAAGCAGATCGAAGACACCA
1 CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA
51294666 TAGTTTGCAG
Statistics
Matches: 270, Mismatches: 68, Indels: 30
0.73 0.18 0.08
Matches are distributed among these distances:
43 6 0.02
44 163 0.60
45 96 0.36
46 5 0.02
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (44 bp):
CTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAGC
Found at i:51294381 original size:89 final size:89
Alignment explanation
Indices: 51294224--51294665 Score: 539
Period size: 89 Copynumber: 5.0 Consensus size: 89
51294214 GATAGTAGAT
* * * * * * *
51294224 CTTGTCTTCCTTTATTGGCAGCAAAGTAGA-TCGAAGATAACAAATCTTGCCTTCCTGTACTGAC
1 CTTGCCTTCCTGTACTGGCAGCAGAGCAGACT-GAAGATAGCAGATCTTGCCTTCCTGTACTGAC
51294288 AGCGAAGCAGATCGAAGACACCAGC
65 AGCGAAGCAGATCGAAGACACCAGC
* * *
51294313 CTTGCCTTCCTGTACTAGCAGC-GAAGCAGACTGAAGATAGCAGATCTTGCCTTCTTGTACTGAT
1 CTTGCCTTCCTGTACTGGCAGCAG-AGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGAC
** * *
51294377 AGCGAAGCAGATTAAAAACACCAAC
65 AGCGAAGCAGATCGAAGACACCAGC
* * * * *
51294402 CTTACCTTCCTGTACTGGCAGCGGAGTAGACTGAAGAAAGAAG-TCTTGCCTTCCTGTACTGACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACA
*
51294466 GTGAAGCAGATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * *
51294490 GTTGCCTTCCTGTACTGGCAGCAGAGCAAACTGAAGATAGCAGATCTTGCATTCCTCTACTAACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACA
*
51294555 GCGAAGCAAATCGAAGACACCAGC
66 GCGAAGCAGATCGAAGACACCAGC
* * * * * * * *
51294579 CTTGCCTTCCTGTACTGACAGCAGAGAAGATTGAAGATAACAAATCTCGTCTTCCTGTACTAACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACA
51294644 GCGAAGCAGATCGAAGACACCA
66 GCGAAGCAGATCGAAGACACCA
51294666 TAGTTTGCAG
Statistics
Matches: 299, Mismatches: 50, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
88 74 0.25
89 223 0.75
90 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (89 bp):
CTTGCCTTCCTGTACTGGCAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACA
GCGAAGCAGATCGAAGACACCAGC
Found at i:51294589 original size:177 final size:177
Alignment explanation
Indices: 51294224--51294665 Score: 591
Period size: 177 Copynumber: 2.5 Consensus size: 177
51294214 GATAGTAGAT
* * * *
51294224 CTTGTCTTCCTTTATTGGCAGCAAAGTAGATCGAAGATAACAAATCTTGCCTTCCTGTACTGACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGTAGAT-GAAGATAACAAATCTTGCCTTCCTGTACTGACA
*
51294289 GCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTAGCAGCGAAGCAGACTGAAGATAGC
65 GCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTAGCAGCGAAGCAAACTGAAGATAGC
* * * * * * *
51294354 AGATCTTGCCTTCTTGTACTGATAGCGAAGCAGATTAAAAACACCAAC
130 AGATCTTGCATTCCTCTACTAACAGCGAAGCAAATCAAAAACACCAAC
* * * *
51294402 CTTACCTTCCTGTACTGGCAGCGGAGTAGACTGAAGA-AAGAAGTCTTGCCTTCCTGTACTGACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGTAGA-TGAAGATAACAAATCTTGCCTTCCTGTACTGACA
* * *
51294466 GTGAAGCAGATCGAAGACACCAGCGTTGCCTTCCTGTACTGGCAGC-AGAGCAAACTGAAGATAG
65 GCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTAGCAGCGA-AGCAAACTGAAGATAG
* * *
51294530 CAGATCTTGCATTCCTCTACTAACAGCGAAGCAAATCGAAGACACCAGC
129 CAGATCTTGCATTCCTCTACTAACAGCGAAGCAAATCAAAAACACCAAC
* * * * *
51294579 CTTGCCTTCCTGTACTGACAGCAGAGAAGATTGAAGATAACAAATCTCGTCTTCCTGTACTAACA
1 CTTGCCTTCCTGTACTGGCAGCAGAGTAGA-TGAAGATAACAAATCTTGCCTTCCTGTACTGACA
51294644 GCGAAGCAGATCGAAGACACCA
65 GCGAAGCAGATCGAAGACACCA
51294666 TAGTTTGCAG
Statistics
Matches: 228, Mismatches: 33, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
176 1 0.00
177 154 0.68
178 72 0.32
179 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (177 bp):
CTTGCCTTCCTGTACTGGCAGCAGAGTAGATGAAGATAACAAATCTTGCCTTCCTGTACTGACAG
CGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTAGCAGCGAAGCAAACTGAAGATAGCA
GATCTTGCATTCCTCTACTAACAGCGAAGCAAATCAAAAACACCAAC
Found at i:51294827 original size:45 final size:45
Alignment explanation
Indices: 51294775--51295134 Score: 340
Period size: 45 Copynumber: 8.0 Consensus size: 45
51294765 AATGTAGACT
*
51294775 GAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* *
51294820 AAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* * *** * * * *
51294865 GAAGATAGCAAATCTTGTCTCCCTG-AGCAGTAGTGGAGTAGGTT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* * * *
51294909 GAAGATAGCA-AGTTTTGTCTTCCTATATTGGCAGTGAAGTAGATC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* * *
51294954 GAAGTTAGCAGATCTTGTC-TCC-CTA--AGCAGCAGTAGAGTAGGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGC-G-A-AGTAGGTC
* * *
51294998 GAAGATAGCA-AGTCTTGTCTTCTTGTATTGGCAACGAAGTA-GAC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* * * * *
51295042 TAAAGATTGTAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATC
1 -GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
* * *
51295088 GAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
51295133 GA
1 GA
51295135 TGACGAGATC
Statistics
Matches: 251, Mismatches: 50, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
41 4 0.02
42 1 0.00
43 5 0.02
44 59 0.24
45 171 0.68
46 6 0.02
47 1 0.00
48 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGGTC
Found at i:51294918 original size:134 final size:135
Alignment explanation
Indices: 51294768--51295134 Score: 431
Period size: 134 Copynumber: 2.7 Consensus size: 135
51294758 TTGTAGCAAT
* * *
51294768 GTAGACTGAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGCGAAGTAGGTCAAAGATAGCAGAT
1 GTAGACTGAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGAT
* *
51294833 CTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAAATCTTGTCTCCCTG-AGCAGTA
66 CTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAGCAAATCTTGTCTCCCTGTAGCAGCA
** *
51294897 GTGGA
131 ACGAA
** * *
51294902 GTAGGTTGAAGATAGCA-AGTTTTGTCTTCCTATATTGGCAGTGAAGTAGATCGAAGTTAGCAGA
1 GTAGACTGAAGATAGCAGA-TTTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGA
* * * * * **
51294966 TCTTGTCTCCCTA-A---GCAGCAGTAGAGTAGGTCGAAGATAGCAAGTCTTGTCTTCTTGTATT
65 TCTTGTCTTCCTATATTGGCAGC-G-A-AGTAGATCGAAGATAGCAAATCTTGTCTCCCTGTAGC
*
51295027 GGCAACGAA
127 AGCAACGAA
* * * *
51295036 GTAGACTAAAGATTGTAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGAT
1 GTAGACTGAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGAT
*
51295101 CTTGTCTTCCTATATTGGTAGCGAAGTAGATCGA
66 CTTGTCTTCCTATATTGGCAGCGAAGTAGATCGA
51295135 TGACGAGATC
Statistics
Matches: 192, Mismatches: 31, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
130 5 0.03
131 1 0.01
132 1 0.01
133 31 0.16
134 137 0.71
135 11 0.06
136 1 0.01
137 1 0.01
138 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (135 bp):
GTAGACTGAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGAT
CTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAGCAAATCTTGTCTCCCTGTAGCAGCA
ACGAA
Found at i:51294919 original size:44 final size:44
Alignment explanation
Indices: 51294812--51295017 Score: 169
Period size: 44 Copynumber: 4.6 Consensus size: 44
51294802 TTGGCAGCGA
* * * * *** * *
51294812 AGTAGGTCAAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTCGAAGATAGCAAATCTTGTCTCCCT-AAGCAGCAGTGG
* * *
51294857 AGTAGATCGAAGATAGCAAATCTTGTCTCCCTGAGCAGTAGTGG
1 AGTAGGTCGAAGATAGCAAATCTTGTCTCCCTAAGCAGCAGTGG
* * * * *** *
51294901 AGTAGGTTGAAGATAGCAAGTTTTGTCTTCCTATATTGGCAGTGA
1 AGTAGGTCGAAGATAGCAAATCTTGTCTCCCTA-AGCAGCAGTGG
* * * *
51294946 AGTAGATCGAAGTTAGCAGATCTTGTCTCCCTAAGCAGCAGTAG
1 AGTAGGTCGAAGATAGCAAATCTTGTCTCCCTAAGCAGCAGTGG
*
51294990 AGTAGGTCGAAGATAGCAAGTCTTGTCT
1 AGTAGGTCGAAGATAGCAAATCTTGTCT
51295018 TCTTGTATTG
Statistics
Matches: 122, Mismatches: 38, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
44 62 0.51
45 60 0.49
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
AGTAGGTCGAAGATAGCAAATCTTGTCTCCCTAAGCAGCAGTGG
Found at i:51294927 original size:89 final size:89
Alignment explanation
Indices: 51294775--51295134 Score: 384
Period size: 89 Copynumber: 4.0 Consensus size: 89
51294765 AATGTAGACT
* * *** * * *
51294775 GAAGATAGCAGATTTTGTCTTCCTGTATTGGCAGCGAAGTAGGTCAAAGATAGCAGATCTTGTCT
1 GAAGATAGCAGATCTTGTCTCCCTG-AGCAGCAGTGGAGTAGGTCGAAGATAGCAGATCTTGTCT
*
51294840 TCCTGTATTGGCAGCGAAGTAGATC
65 TCCTATATTGGCAGCGAAGTAGATC
* * * *
51294865 GAAGATAGCAAATCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATAGCA-AGTTTTGTCT
1 GAAGATAGCAGATCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTCGAAGATAGCAGA-TCTTGTCT
*
51294929 TCCTATATTGGCAGTGAAGTAGATC
65 TCCTATATTGGCAGCGAAGTAGATC
* * *
51294954 GAAGTTAGCAGATCTTGTCTCCCTAAGCAGCAGTAGAGTAGGTCGAAGATAGCA-AGTCTTGTCT
1 GAAGATAGCAGATCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTCGAAGATAGCAGA-TCTTGTCT
* * *
51295018 TCTTGTATTGGCAACGAAGTAGA-C
65 TCCTATATTGGCAGCGAAGTAGATC
* * * * *** * *
51295042 TAAAGATTGTAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTC
1 -GAAGATAGCAGATCTTGTCTCCCTG-AGCAGCAGTGGAGTAGGTCGAAGATAGCAGATCTTGTC
*
51295107 TTCCTATATTGGTAGCGAAGTAGATC
64 TTCCTATATTGGCAGCGAAGTAGATC
51295133 GA
1 GA
51295135 TGACGAGATC
Statistics
Matches: 223, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
88 2 0.01
89 146 0.65
90 73 0.33
91 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGATAGCAGATCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTCGAAGATAGCAGATCTTGTCTT
CCTATATTGGCAGCGAAGTAGATC
Found at i:51295443 original size:44 final size:44
Alignment explanation
Indices: 51295147--51295444 Score: 212
Period size: 44 Copynumber: 6.8 Consensus size: 44
51295137 ACGAGATCCA
* * * * **
51295147 AATCTTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCCA-C
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC
** * * * **
51295190 AAGTTTTACCTCCCTGAAGTTGCAATGGAGCAAACAGAAGAAACC
1 AA-TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC
* * * *
51295235 AATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATT-AA-AACCAC
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAAC-C
* * * * * * **
51295278 AGATCTTATCTCTCTGAAGTTGCAATAGAGCAGA-T--CGTATTC
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC
* * *
51295320 AGTCTTATCTCCCTGAAGTTGCAGTGTGGAGTAGATTGAAGAAACC
1 AATCCTATCTCCCTGAAGTTGCA--GTGGAGCAGATTGAAGAAACC
* * ** *
51295366 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAGGCTACT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC
51295410 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT
51295445 AAATTGATGA
Statistics
Matches: 196, Mismatches: 49, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
41 20 0.10
42 5 0.03
43 15 0.08
44 128 0.65
45 3 0.02
46 25 0.13
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAAACC
Found at i:51296926 original size:14 final size:15
Alignment explanation
Indices: 51296907--51296949 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
51296897 AATCATTTCA
51296907 ATATTATT-ATTATC
1 ATATTATTCATTATC
*
51296921 ATATTATATCATTATT
1 ATATTAT-TCATTATC
51296937 AT-TTATTCATTAT
1 ATATTATTCATTAT
51296950 ACTTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 14 0.54
15 5 0.19
16 7 0.27
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTATTCATTATC
Found at i:51296927 original size:11 final size:12
Alignment explanation
Indices: 51296909--51296949 Score: 50
Period size: 11 Copynumber: 3.4 Consensus size: 12
51296899 TCATTTCAAT
51296909 ATTATTATTATC
1 ATTATTATTATC
51296921 A-TATTA-TATC
1 ATTATTATTATC
51296931 ATTATTATTTATTC
1 ATTATTA-TTA-TC
51296945 ATTAT
1 ATTAT
51296950 ACTTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 5 0.20
11 10 0.40
12 1 0.04
13 2 0.08
14 7 0.28
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:51297747 original size:109 final size:109
Alignment explanation
Indices: 51297546--51297874 Score: 554
Period size: 109 Copynumber: 3.0 Consensus size: 109
51297536 TATCTGTTTA
* *
51297546 AAAAGATTTCAAAATAAGGTAATGTTTTGCATTTGGAAATTCTAGAAAACGTGCCCTAATGTGCT
1 AAAA-ATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCT
*
51297611 GGGTTTCGATTTTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
65 GGGTTTCGATTTTTCTCATTCGACCAAATAGCCAAATATCCTTTT
* *
51297656 AAAAATTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAATGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
51297721 GGTTTCGATTTTTCTCATTCGACCAAATAGCCAAATATCCTTTT
66 GGTTTCGATTTTTCTCATTCGACCAAATAGCCAAATATCCTTTT
* *
51297765 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGCCCTAATGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
* *
51297830 GGTTTCGA--TTTCTCATTGGACCAAATAGCCAAATATCCTCTT
66 GGTTTCGATTTTTCTCATTCGACCAAATAGCCAAATATCCTTTT
51297872 AAA
1 AAA
51297875 TCTTAATCCA
Statistics
Matches: 208, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
107 35 0.17
109 169 0.81
110 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (109 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
GGTTTCGATTTTTCTCATTCGACCAAATAGCCAAATATCCTTTT
Found at i:51298546 original size:50 final size:52
Alignment explanation
Indices: 51298420--51298551 Score: 137
Period size: 50 Copynumber: 2.6 Consensus size: 52
51298410 ATGAACAAAT
* *
51298420 GAGTTACTTAATGCA-AGACTTAATTTAATGATGCAGACTTAAACTAACATAG
1 GAGTTACATAATGCATA-ACTTTATTTAATGATGCAGACTTAAACTAACATAG
* ** * * *
51298472 GAGTAACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCAT-G
1 GAGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATAG
*
51298521 GAAGTTACATAATGCATAACTTTATTAAATG
1 G-AGTTACATAATGCATAACTTTATTTAATG
51298552 CGAAACACAA
Statistics
Matches: 64, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
49 2 0.03
50 28 0.44
51 15 0.23
52 19 0.30
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATAG
Found at i:51303354 original size:30 final size:32
Alignment explanation
Indices: 51303282--51303357 Score: 93
Period size: 30 Copynumber: 2.4 Consensus size: 32
51303272 TAATGCATGT
* *
51303282 CATAATTAAAAGATGTAGATTAATAATGCAAGA
1 CATAATT-AAAGATGCAGATTAATAATACAAGA
*
51303315 CATTAATTAAAGATGCA-TTTAATAA-ACAAGA
1 CA-TAATTAAAGATGCAGATTAATAATACAAGA
51303346 CATAATTAAAGA
1 CATAATTAAAGA
51303358 CTCATATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
30 10 0.26
31 7 0.18
32 7 0.18
33 10 0.26
34 5 0.13
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.28
Consensus pattern (32 bp):
CATAATTAAAGATGCAGATTAATAATACAAGA
Found at i:51305580 original size:20 final size:20
Alignment explanation
Indices: 51305555--51305599 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
51305545 GTACTAACCG
51305555 AATTAATTAG-GTCTTAG-TTT
1 AATTAATT-GTGTCTT-GTTTT
51305575 AATTAATTGTGTCTTGTTTT
1 AATTAATTGTGTCTTGTTTT
51305595 AATTA
1 AATTA
51305600 TGTGAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.53
Consensus pattern (20 bp):
AATTAATTGTGTCTTGTTTT
Found at i:51306912 original size:27 final size:27
Alignment explanation
Indices: 51306868--51306928 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
51306858 TTGGAAAAGT
* *
51306868 AAAAAAA-AAAGAATTATGAAAATTA-A
1 AAAAAAAGAAAAAAATATG-AAATTATA
*
51306894 AAAAAAAGAAAAAAATATGAAGTTATA
1 AAAAAAAGAAAAAAATATGAAATTATA
51306921 AAAAAAAG
1 AAAAAAAG
51306929 TGAAGTGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 12 0.40
27 18 0.60
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (27 bp):
AAAAAAAGAAAAAAATATGAAATTATA
Found at i:51306923 original size:26 final size:26
Alignment explanation
Indices: 51306867--51306927 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
51306857 ATTGGAAAAG
* *
51306867 TAAAAAAAAAAGAATTATGAAAATTA
1 TAAAAAAAAAAAAAATATGAAAATTA
* *
51306893 AAAAAAAAGAAAAAAATATG-AAGTTA
1 TAAAAAAA-AAAAAAATATGAAAATTA
51306919 TAAAAAAAA
1 TAAAAAAAA
51306928 GTGAAGTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.66
27 9 0.31
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (26 bp):
TAAAAAAAAAAAAAATATGAAAATTA
Found at i:51308011 original size:30 final size:27
Alignment explanation
Indices: 51307962--51308021 Score: 66
Period size: 30 Copynumber: 2.1 Consensus size: 27
51307952 AAAGAAATTG
* **
51307962 AAGAAAGAAGAGAAAACGAGTTAGAAA
1 AAGAAAGAAGAAAAAACGAGCGAGAAA
51307989 AAGAAATGAAAGAAAAAGACGAGCGAGAAA
1 AAGAAA-G-AAGAAAAA-ACGAGCGAGAAA
51308019 AAG
1 AAG
51308022 TGAGGAATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.22
28 1 0.04
29 7 0.26
30 13 0.48
ACGTcount: A:0.63, C:0.05, G:0.27, T:0.05
Consensus pattern (27 bp):
AAGAAAGAAGAAAAAACGAGCGAGAAA
Found at i:51320250 original size:17 final size:18
Alignment explanation
Indices: 51320230--51320263 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51320220 TAACTTCAAT
51320230 TTGCATT-TAATTATGTC
1 TTGCATTATAATTATGTC
51320247 TTGCATTATAATTATGT
1 TTGCATTATAATTATGT
51320264 TTCTTATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (18 bp):
TTGCATTATAATTATGTC
Found at i:51322866 original size:9 final size:9
Alignment explanation
Indices: 51322839--51322882 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
51322829 TTATATTTCT
*
51322839 TTTTCTATA
1 TTTTATATA
51322848 TTTCTATATA
1 TTT-TATATA
51322858 TTTTATATA
1 TTTTATATA
51322867 TTTTATGAT-
1 TTTTAT-ATA
51322876 TTTTATA
1 TTTTATA
51322883 ATCTTTTTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
8 1 0.03
9 21 0.66
10 10 0.31
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTATATA
Found at i:51322866 original size:19 final size:18
Alignment explanation
Indices: 51322838--51322882 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
51322828 TTTATATTTC
*
51322838 TTTTTCTATATTTCTAT-A
1 TTTTTATATATTT-TATGA
51322856 TATTTTATATATTTTATGA
1 T-TTTTATATATTTTATGA
51322875 TTTTTATA
1 TTTTTATA
51322883 ATCTTTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTTATATATTTTATGA
Found at i:51323318 original size:86 final size:86
Alignment explanation
Indices: 51323106--51323327 Score: 261
Period size: 86 Copynumber: 2.5 Consensus size: 86
51323096 TGCATTTTGG
* * **
51323106 CAATTGAGTGCAAAAAAAAAGCAGGGATTAATTGTTTTTTTG-AAAAAGTTTGAGGGCCCTTTTG
1 CAATTGAGTGCAAAAAAAGAG--GGGATTAATTG-CTTTTTGAAAAAAAATTGAGGGCCCTTTTG
*
51323170 ATGCATTTTGTCAGTTCAAGTATC
63 ATGCATTTTGCCAGTTCAAGTATC
* * * *
51323194 CAATTGAGTGCAAAAAAAGA-GAGCTTAATTACATTTTTTGAAAAAAAATTGA-GGCCTTTTTGA
1 CAATTGAGTGCAAAAAAAGAGGGGATTAATTGC--TTTTTGAAAAAAAATTGAGGGCCCTTTTGA
51323257 TGCATTTTGCCAGTTCAAGTATC
64 TGCATTTTGCCAGTTCAAGTATC
* * *
51323280 TAATTGAGTGCAAAAAAAGTAGGGGTTTAATTGCTTTTTTAAAAAAAA
1 CAATTGAGTGCAAAAAAAG-AGGGGATTAATTGCTTTTTGAAAAAAAA
51323328 AGTTTAAGGG
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
85 8 0.07
86 69 0.60
87 10 0.09
88 28 0.24
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (86 bp):
CAATTGAGTGCAAAAAAAGAGGGGATTAATTGCTTTTTGAAAAAAAATTGAGGGCCCTTTTGATG
CATTTTGCCAGTTCAAGTATC
Found at i:51325279 original size:19 final size:18
Alignment explanation
Indices: 51325249--51325305 Score: 73
Period size: 17 Copynumber: 3.2 Consensus size: 18
51325239 TGGTTGAATA
51325249 AATT-ACTCATCTTAGTT
1 AATTAACTCATCTTAGTT
*
51325266 AATTGAATTCATCTTAGTT
1 AATT-AACTCATCTTAGTT
51325285 AA-TAACTCATCTTAGATT
1 AATTAACTCATCTTAG-TT
51325303 AAT
1 AAT
51325306 ACATGAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 15 0.44
18 5 0.15
19 14 0.41
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (18 bp):
AATTAACTCATCTTAGTT
Found at i:51325296 original size:17 final size:17
Alignment explanation
Indices: 51325253--51325306 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 17
51325243 TGAATAAATT
51325253 ACTCATCTTAGTTAATTGA
1 ACTCATCTTAGTTAA-T-A
*
51325272 ATTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATA
51325289 ACTCATCTTAGATTAATA
1 ACTCATCTTAG-TTAATA
51325307 CATGAGTTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 11 0.34
18 7 0.22
19 14 0.44
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (17 bp):
ACTCATCTTAGTTAATA
Found at i:51326472 original size:50 final size:52
Alignment explanation
Indices: 51326414--51326532 Score: 188
Period size: 50 Copynumber: 2.3 Consensus size: 52
51326404 TTAATAAAGT
* *
51326414 CATGCATTATGTAACTCTCATGTTAG-TTAAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATCATTAAATTATGA
*
51326464 CATGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATCATTAAATTATGT
1 CATGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATCATTAAATTATGA
*
51326516 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
51326533 ATTTGTTCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 25 0.40
51 13 0.21
52 25 0.40
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATCATTAAATTATGA
Found at i:51327117 original size:27 final size:27
Alignment explanation
Indices: 51327079--51327130 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
51327069 AGTTTGTAGG
*
51327079 TACATGCATGGACAGCATTGAAGATAA
1 TACATGCATGGACAGCAATGAAGATAA
51327106 TACATGCATGGACAGCAATGAAGAT
1 TACATGCATGGACAGCAATGAAGAT
51327131 GCTTCAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (27 bp):
TACATGCATGGACAGCAATGAAGATAA
Found at i:51327832 original size:21 final size:24
Alignment explanation
Indices: 51327787--51327836 Score: 70
Period size: 21 Copynumber: 2.2 Consensus size: 24
51327777 GCTGAATTCA
51327787 TGAACCATCTTTAATGTTTTAGTG
1 TGAACCATCTTTAATGTTTTAGTG
*
51327811 TGAACCCT-TTTAAT-TTTT-GTG
1 TGAACCATCTTTAATGTTTTAGTG
51327832 TGAAC
1 TGAAC
51327837 ACATTAGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 8 0.32
22 4 0.16
23 6 0.24
24 7 0.28
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (24 bp):
TGAACCATCTTTAATGTTTTAGTG
Found at i:51329855 original size:20 final size:20
Alignment explanation
Indices: 51329830--51329875 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
51329820 TAATTAAATG
51329830 AGCTCAAACGAGCTGAATTA
1 AGCTCAAACGAGCTGAATTA
***
51329850 AGCTCATGTGAGCTGAATTA
1 AGCTCAAACGAGCTGAATTA
*
51329870 AACTCA
1 AGCTCA
51329876 TGTGAGCTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (20 bp):
AGCTCAAACGAGCTGAATTA
Found at i:51329876 original size:20 final size:20
Alignment explanation
Indices: 51329839--51329886 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
51329829 GAGCTCAAAC
*
51329839 GAGCTGAATTAAGCTCATGT
1 GAGCTGAATTAAACTCATGT
51329859 GAGCTGAATTAAACTCATGT
1 GAGCTGAATTAAACTCATGT
51329879 GAGCTGAA
1 GAGCTGAA
51329887 CCGAGGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (20 bp):
GAGCTGAATTAAACTCATGT
Found at i:51333271 original size:45 final size:42
Alignment explanation
Indices: 51333216--51333337 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 42
51333206 TTTTCTCTTA
51333216 TTTCT-TCAATTTCTTTTTCGATTTTCTCTTTTTCACTTCCTT
1 TTTCTCTCAATTTCTTTTTC-ATTTTCTCTTTTTCACTTCCTT
** *
51333258 TTTCAATCTCAATTTCTTTTTCAATTTTCTCTTTTTCTTTTTCTT
1 TTTC--TCTCAATTTCTTTTTC-ATTTTCTCTTTTTCACTTCCTT
* *
51333303 TTTCTCTCACTTCTCTTTTTC-TTTTCTCATTTTCA
1 TTTCTCTCAATT-TCTTTTTCATTTTCTCTTTTTCA
51333338 TATTCATTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 16 0.23
43 7 0.10
44 9 0.13
45 37 0.54
ACGTcount: A:0.11, C:0.24, G:0.01, T:0.65
Consensus pattern (42 bp):
TTTCTCTCAATTTCTTTTTCATTTTCTCTTTTTCACTTCCTT
Found at i:51333361 original size:18 final size:17
Alignment explanation
Indices: 51333293--51333387 Score: 59
Period size: 18 Copynumber: 5.4 Consensus size: 17
51333283 TTTCTCTTTT
51333293 TCTTTTTCTTTTTC-TC
1 TCTTTTTCTTTTTCTTC
* *
51333309 TCACTTCTCTTTTTCTTTTC
1 TC-TTTTTCTTTTTC--TTC
* * *
51333329 TCATTTTCATATTCATTC
1 TCTTTTTCTTTTTC-TTC
**
51333347 TCTTTTTCTTTTTCACC
1 TCTTTTTCTTTTTCTTC
*
51333364 TACCTTTTCTTTTTCTTC
1 T-CTTTTTCTTTTTCTTC
51333382 T-TTTTT
1 TCTTTTT
51333388 GATTTTATTA
Statistics
Matches: 58, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
16 6 0.10
17 12 0.21
18 28 0.48
19 8 0.14
20 4 0.07
ACGTcount: A:0.07, C:0.25, G:0.00, T:0.67
Consensus pattern (17 bp):
TCTTTTTCTTTTTCTTC
Found at i:51333380 original size:6 final size:6
Alignment explanation
Indices: 51333270--51333360 Score: 58
Period size: 6 Copynumber: 14.7 Consensus size: 6
51333260 TCAATCTCAA
* ** *
51333270 TTTCTT TTTCAATT TTCTCTT TTTCTT TTTCTT TTTCTC TCAC-T TCTCTT
1 TTTCTT TTTC--TT TT-TCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* * * * *
51333320 TTTCTT TTCTCAT TTTCAT ATTCAT TCTCTT TTTCTT TTTC
1 TTTCTT TT-TCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTC
51333361 ACCTACCTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
5 3 0.04
6 50 0.74
7 9 0.13
8 4 0.06
9 2 0.03
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTCTT
Found at i:51335878 original size:20 final size:20
Alignment explanation
Indices: 51335855--51335904 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
51335845 TGAGCTCAAA
* *
51335855 TGAGCTGAATTAAGCTTATG
1 TGAGCTGAATTAAACTCATG
*
51335875 TGAGTTGAATTAAACTCATG
1 TGAGCTGAATTAAACTCATG
51335895 TGAGCTGAAT
1 TGAGCTGAAT
51335905 CGAGGTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (20 bp):
TGAGCTGAATTAAACTCATG
Found at i:51337671 original size:13 final size:13
Alignment explanation
Indices: 51337653--51337678 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51337643 ACCTGAAAGC
51337653 AATTTAATTCATA
1 AATTTAATTCATA
51337666 AATTTAATTCATA
1 AATTTAATTCATA
51337679 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:51338093 original size:20 final size:21
Alignment explanation
Indices: 51338068--51338106 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51338058 TCAAACAAGC
51338068 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
51338088 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
51338107 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:51339401 original size:18 final size:18
Alignment explanation
Indices: 51339380--51339431 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
51339370 CTCTCTTTCT
51339380 TTTTCAATCTCATTTTGC
1 TTTTCAATCTCATTTTGC
* *
51339398 TTTTCACTCT-ATTTTGT
1 TTTTCAATCTCATTTTGC
*
51339415 TTTTGAAATCTCATTTT
1 TTTT-CAATCTCATTTT
51339432 CATATTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 10 0.36
18 13 0.46
19 5 0.18
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTCAATCTCATTTTGC
Found at i:51339445 original size:6 final size:6
Alignment explanation
Indices: 51339436--51339534 Score: 74
Period size: 6 Copynumber: 16.0 Consensus size: 6
51339426 CATTTTCATA
* * * **
51339436 TTTTTC TTTTTC AATTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC TTTTTC
1 TTTTTC TTTTTC -TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
* * **
51339487 GTTTTC TTTTTC TTTTT- TGTTTTC TTTTTC TTCTTC ACTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC
51339535 GAATTCATTA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
5 1 0.01
6 56 0.80
7 10 0.14
8 3 0.04
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:51340499 original size:11 final size:10
Alignment explanation
Indices: 51340482--51340533 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
51340472 TCAATCCACG
51340482 ATTTTTTTTT
1 ATTTTTTTTT
51340492 ACTTTTTTTTT
1 A-TTTTTTTTT
**
51340503 ATTTTTTTCG
1 ATTTTTTTTT
51340513 ATTTTTTTTT
1 ATTTTTTTTT
**
51340523 AAATTTTTTT
1 ATTTTTTTTT
51340533 A
1 A
51340534 ATCACTTACT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 25 0.71
11 10 0.29
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:51341706 original size:13 final size:13
Alignment explanation
Indices: 51341688--51341713 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51341678 ACCTGAAAGT
51341688 AATTTAATTCATA
1 AATTTAATTCATA
51341701 AATTTAATTCATA
1 AATTTAATTCATA
51341714 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:51342128 original size:20 final size:21
Alignment explanation
Indices: 51342103--51342141 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
51342093 TCAAACAAGC
51342103 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
51342123 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
51342142 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:51343686 original size:16 final size:17
Alignment explanation
Indices: 51343645--51343693 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
51343635 CGGATAGTAT
51343645 CATGAAAATGCATGATC
1 CATGAAAATGCATGATC
51343662 CATTGAAAATGCATG-TAC
1 CA-TGAAAATGCATGAT-C
51343680 C-TGAAAATGCATGA
1 CATGAAAATGCATGA
51343694 ATGTTGGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 12 0.41
17 3 0.10
18 14 0.48
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.24
Consensus pattern (17 bp):
CATGAAAATGCATGATC
Found at i:51347586 original size:15 final size:13
Alignment explanation
Indices: 51347547--51347588 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 13
51347537 AGTGTGAGGA
51347547 AAAAGAGAAAATAG
1 AAAAGAGAAAA-AG
51347561 AAAAG-GAAAAAG
1 AAAAGAGAAAAAG
51347573 AAATGAGAGAAAAAG
1 AAA--AGAGAAAAAG
51347588 A
1 A
51347589 GGCAAGTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 7 0.28
15 8 0.32
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (13 bp):
AAAAGAGAAAAAG
Found at i:51349084 original size:36 final size:36
Alignment explanation
Indices: 51349033--51349104 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
51349023 AAGTTTGAAT
51349033 GGGTTGTCGAAAAGTTATTTTCTGTTCAAAATTCAA
1 GGGTTGTCGAAAAGTTATTTTCTGTTCAAAATTCAA
* *
51349069 GGGTTTTCGAGAAGTTATTTTCTGTTCAAAATTCAA
1 GGGTTGTCGAAAAGTTATTTTCTGTTCAAAATTCAA
51349105 AGTGTCACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.40
Consensus pattern (36 bp):
GGGTTGTCGAAAAGTTATTTTCTGTTCAAAATTCAA
Done.