Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 16 of 208
Found at i:6422467 original size:18 final size:19
Alignment explanation
Indices: 6422444--6422485 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
6422434 AATTTGTAGC
6422444 AAAAATATT-TTAAATTAA
1 AAAAATATTGTTAAATTAA
* *
6422462 AAAAATGTTGTTGAATTAA
1 AAAAATATTGTTAAATTAA
6422481 AAAAA
1 AAAAA
6422486 AGATAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (19 bp):
AAAAATATTGTTAAATTAA
Found at i:6423668 original size:2 final size:2
Alignment explanation
Indices: 6423661--6423686 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6423651 TCAACTTCCA
6423661 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
6423687 CATGGGGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:6427383 original size:3 final size:3
Alignment explanation
Indices: 6427375--6427401 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6427365 AACTGAAGAA
6427375 ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
6427402 TTGTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:6434072 original size:30 final size:30
Alignment explanation
Indices: 6434038--6434100 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
6434028 ATTTAACAAG
*
6434038 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** * *
6434068 CAAATGTCTTTAAGATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
6434098 CAA
1 CAA
6434101 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:6434755 original size:21 final size:23
Alignment explanation
Indices: 6434731--6434778 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
6434721 AGGTTACTGC
6434731 TTTTTGATGTTGTT-T-TCATTA
1 TTTTTGATGTTGTTATGTCATTA
*
6434752 TTTTTGTTGTTGTTATGTCATTA
1 TTTTTGATGTTGTTATGTCATTA
6434775 TTTT
1 TTTT
6434779 GGTATGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.54
22 1 0.04
23 10 0.42
ACGTcount: A:0.12, C:0.04, G:0.15, T:0.69
Consensus pattern (23 bp):
TTTTTGATGTTGTTATGTCATTA
Found at i:6437730 original size:189 final size:189
Alignment explanation
Indices: 6437410--6437789 Score: 724
Period size: 189 Copynumber: 2.0 Consensus size: 189
6437400 TTGGTGGTGT
* *
6437410 TGATCTTGGCTATTTTGGACTTTGAGGTGCTTTGGTACTCATGATTGACCTTCTTTGATCTGTGA
1 TGATCTTGGCTATTTTGGACTTTGAGGTGCTTTGGTACTCACGATCGACCTTCTTTGATCTGTGA
*
6437475 AAAAGGGTTGATGCATGGAGGTTGAGTTTGGCACTGTTAGATCTTTTAAAGGATATATATATAGC
66 AAAAGGGTTGATGCATGGAGGATGAGTTTGGCACTGTTAGATCTTTTAAAGGATATATATATAGC
6437540 TGAAGACTTTGCTCATTAACAAAGAATTTCTAAACCTAATTTACTTGAGTTTTTTATAG
131 TGAAGACTTTGCTCATTAACAAAGAATTTCTAAACCTAATTTACTTGAGTTTTTTATAG
6437599 TGATCTTGGCTATTTTGGACTTTGAGGTGCTTTGGTACTCACGATCGACCTTCTTTGATCTGTGA
1 TGATCTTGGCTATTTTGGACTTTGAGGTGCTTTGGTACTCACGATCGACCTTCTTTGATCTGTGA
*
6437664 AAAAGGGTTGATGCATTGAGGATGAGTTTGGCACTGTTAGATCTTTTAAAGGATATATATATAGC
66 AAAAGGGTTGATGCATGGAGGATGAGTTTGGCACTGTTAGATCTTTTAAAGGATATATATATAGC
6437729 TGAAGACTTTGCTCATTAACAAAGAATTTCTAAACCTAATTTACTTGAGTTTTTTATAG
131 TGAAGACTTTGCTCATTAACAAAGAATTTCTAAACCTAATTTACTTGAGTTTTTTATAG
6437788 TG
1 TG
6437790 TTCAAATGGG
Statistics
Matches: 187, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.39
Consensus pattern (189 bp):
TGATCTTGGCTATTTTGGACTTTGAGGTGCTTTGGTACTCACGATCGACCTTCTTTGATCTGTGA
AAAAGGGTTGATGCATGGAGGATGAGTTTGGCACTGTTAGATCTTTTAAAGGATATATATATAGC
TGAAGACTTTGCTCATTAACAAAGAATTTCTAAACCTAATTTACTTGAGTTTTTTATAG
Found at i:6451676 original size:46 final size:46
Alignment explanation
Indices: 6451609--6451996 Score: 498
Period size: 46 Copynumber: 8.6 Consensus size: 46
6451599 TTTGAGTACT
*
6451609 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
6451655 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCATTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGT-G--G---TAGCATTAGCTACACTTA
6451707 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
* * *
6451753 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
* *
6451799 TCTGTTCAAGTGAAAAAGTGATAA---GT-GC--TA--T--ACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
* * *
6451835 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
* *
6451881 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
* *
6451927 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
6451972 TCTGATC-AG-G-GACAAGTGATAAGTG
1 TCTGATCAAGTGAGA-AAGTGATAAGTG
6451997 ATCATATGTA
Statistics
Matches: 308, Mismatches: 17, Indels: 37
0.85 0.05 0.10
Matches are distributed among these distances:
36 27 0.09
38 1 0.00
39 1 0.00
40 4 0.01
42 5 0.02
43 15 0.05
44 3 0.01
45 18 0.06
46 186 0.60
47 1 0.00
49 2 0.01
51 1 0.00
52 44 0.14
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTA
Found at i:6451835 original size:36 final size:36
Alignment explanation
Indices: 6451789--6451861 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
6451779 GGTAGCTTTA
*
6451789 GCTACACTTATCTGTTCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
6451825 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
6451861 G
1 G
6451862 TTAGCCTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.30
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:6451843 original size:82 final size:81
Alignment explanation
Indices: 6451743--6451996 Score: 314
Period size: 82 Copynumber: 3.0 Consensus size: 81
6451733 GGTAGCATTA
* * *
6451743 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGTTCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAA
6451808 GTGAAAAAGTGATAAGT
65 GTGAAAAAGTGATAAGT
*
6451825 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAA
*
6451890 GTGAGAAAGTGATAAGTGGT
65 GTGAAAAAGTGATAA---GT
*
6451910 AGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCT
1 -G-C-TA--TA--CTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCT
* *
6451975 GATC-AG-GGACAAGTGATAAGT
59 GATCAAGTGAAAAAGTGATAAGT
6451996 G
1 G
6451997 ATCATATGTA
Statistics
Matches: 151, Mismatches: 10, Indels: 19
0.84 0.06 0.11
Matches are distributed among these distances:
82 73 0.48
83 1 0.01
85 3 0.02
86 3 0.02
87 1 0.01
88 2 0.01
89 10 0.07
90 4 0.03
91 20 0.13
92 34 0.23
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (81 bp):
GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAAG
TGAAAAAGTGATAAGT
Found at i:6451930 original size:128 final size:128
Alignment explanation
Indices: 6451697--6451953 Score: 424
Period size: 128 Copynumber: 2.0 Consensus size: 128
6451687 ATTAGCATTA
*
6451697 GCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
6451762 GAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGTTCAAGTGAAAAAGTGATAAGT
66 GAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* * *
6451825 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* * * *
6451890 GTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGT
66 GAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
6451953 G
1 G
6451954 GTAGCCTAGC
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 119 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (128 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
GAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:6451946 original size:174 final size:174
Alignment explanation
Indices: 6451645--6451996 Score: 539
Period size: 174 Copynumber: 2.0 Consensus size: 174
6451635 GGTAGCATTA
*
6451645 GCTACACTTATCTGATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCATTAGCTACACTTATCT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAA--GGTAG-ATTAGCATTAGCTACACTTATCT
6451710 GATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGTGAT
63 GATCAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGTGAT
* *
6451775 AAGTGGTAGCTTTAGCTACACTTATCTGTTCAAGTGAAAAAGTGATAAGT
128 AAGTGGTAGC-CTAGCTACACTTATCTGATC-AG-GAAAAAGTGATAAGT
* *
6451825 GCTATACTTATCTGATCAAGTGACAAAGTGATAA-GT-G-TTAGCCTTAGCTACACTTATCTGAT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGGTAGATTAGCATTAGCTACACTTATCTGAT
* * *
6451887 CAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAG
66 CAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAG
* *
6451952 TGGTAGCCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGT
131 TGGTAGCCTAGCTACACTTATCTGATCAGGAAAAAGTGATAAGT
6451996 G
1 G
6451997 ATCATATGTA
Statistics
Matches: 162, Mismatches: 10, Indels: 9
0.90 0.06 0.05
Matches are distributed among these distances:
171 14 0.09
172 2 0.01
173 18 0.11
174 93 0.57
176 1 0.01
177 2 0.01
180 32 0.20
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (174 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGGTAGATTAGCATTAGCTACACTTATCTGAT
CAAGTGAGAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAG
TGGTAGCCTAGCTACACTTATCTGATCAGGAAAAAGTGATAAGT
Found at i:6461412 original size:19 final size:20
Alignment explanation
Indices: 6461372--6461415 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
6461362 GTTTCTTTTG
* *
6461372 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
6461391 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
6461410 GCATTA
1 GCATTA
6461416 GACTTTCGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:6465848 original size:46 final size:46
Alignment explanation
Indices: 6465653--6465981 Score: 154
Period size: 46 Copynumber: 7.4 Consensus size: 46
6465643 ATAACTCTAT
*
6465653 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* ** * ** * * *
6465699 CTTCCTGTATTTGGCAG-CAAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * * *
6465745 CTCCCTG-A--CCACAGTGGAGTACATTGAAGCCGA-T-AACA-CTTG-
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAA---GATTGCAGATCTTGC
6465787 -TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* ** ** * * *
6465832 CTTCCTGTATTTGGCAG-CAAAGTAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * * *
6465878 CTCCCTG-A--CCACAGTGGAGTACATTGAAGCCGA-T-AACA-CTTG-
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAA---GATTGCAGATCTTGC
6465920 -TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* *
6465965 TTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
6465982 CGAAGCAAAT
Statistics
Matches: 193, Mismatches: 64, Indels: 52
0.62 0.21 0.17
Matches are distributed among these distances:
41 16 0.08
42 4 0.02
43 25 0.13
44 44 0.23
45 6 0.03
46 98 0.51
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:6465850 original size:133 final size:134
Alignment explanation
Indices: 6465545--6466109 Score: 929
Period size: 133 Copynumber: 4.2 Consensus size: 134
6465535 GCAGAGCTGG
* *
6465545 TTGAAGATAT-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTT
* * * *
6465609 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
65 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATGTCCCTGTATTTGGCAGTGGA
6465674 ATAGA
130 ATAGA
6465679 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTTA
6465744 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACT-TGTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATGTCCCTGTATTTGGCAGTGGAA
6465808 TAGA
131 TAGA
*
6465812 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGTAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTTA
6465877 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACT-TGTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATGTCCCTGTATTTGGCAGTGGAA
6465941 TAGA
131 TAGA
* * *
6465945 TTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAAATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTTA
* * * *
6466010 TCTCCCTGACCACAGTGGAGTACATTGAAGCCGGTAACTCTATTTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATGTCCCTGTATTTGGCAGTGGAA
6466075 TAGA
131 TAGA
** * * *
6466079 TTGAAGAAAGTAGATCTTGTCTTCATGTATT
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATT
6466110 GGCGTGAAGT
Statistics
Matches: 408, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
133 257 0.63
134 151 0.37
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATGTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:6466060 original size:267 final size:267
Alignment explanation
Indices: 6465545--6466130 Score: 946
Period size: 267 Copynumber: 2.2 Consensus size: 267
6465535 GCAGAGCTGG
*
6465545 TTGAAGATAT-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATGGCAGATTTT
* *
6465609 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
65 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATCTCCCTGTATCTGGCAGTGGA
*
6465674 ATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAGATCAAAGATGGCAGA
130 ATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAAATCAAAGATGGCAGA
6465739 TTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTTGTCCCTGTATTTGGCAGT
195 TTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTTGTCCCTGTATTTGGCAGT
6465804 GGAATAGA
260 GGAATAGA
* *
6465812 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGTAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATGGCAGATTTTA
* *
6465877 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACT-TGTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATCTCCCTGTATCTGGCAGTGGAA
* *
6465941 TAGATTGAAGATTGCAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAAATCAAAGATGGCAGAT
131 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAAATCAAAGATGGCAGAT
* * * *
6466006 TTTATCTCCCTGACCACAGTGGAGTACATTGAAGCCGGTAACTCTATTTCCCTGTATTTGGCAGT
196 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACT-TGTCCCTGTATTTGGCAGT
6466071 GGAATAGA
260 GGAATAGA
** * * * *
6466079 TTGAAGAAAGTAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGAT
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGAT
6466131 AGCTGATCCT
Statistics
Matches: 295, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
265 15 0.05
266 131 0.44
267 149 0.51
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (267 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATGGCAGATTTTA
CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTATCTCCCTGTATCTGGCAGTGGAA
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGCAAATCAAAGATGGCAGAT
TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACACTTGTCCCTGTATTTGGCAGTG
GAATAGA
Found at i:6466129 original size:44 final size:45
Alignment explanation
Indices: 6466075--6466802 Score: 635
Period size: 44 Copynumber: 16.6 Consensus size: 45
6466065 GGCAGTGGAA
* * * *
6466075 TAGATTGAAGAAAGTAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * * *
6466119 TAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-GAAA
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * *
6466163 TGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * *
6466207 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
** * * *
6466251 TAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * *
6466295 TGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * *
6466339 TAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGG-CATGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
** * * *
6466383 TAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * *
6466427 TGGATCGAAG-ATGCAGATCTTGTCTTCCCAT-TTGGTGGCGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * *
6466470 TAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGT-GTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * ** *
6466514 TAGATCGAAGATAGCAGGTCCGGTCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * * * *
6466558 TGGATCGACG-ATGCAGATCTTGTCTACCCATATTGGTGGCGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * *
6466602 TAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * * * *
6466646 TAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-AAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * * * * *
6466690 TGGATCCAAGATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
* * *
6466734 TAGATCGAAGAAAGCAGATCTTGTCTTCCCAT-CTGGTGGTGAAG
1 TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
6466778 TAGATCGAAGAAAGCAGATCTTGTC
1 TAGATCGAAGAAAGCAGATCTTGTC
6466803 CCTGTATTTG
Statistics
Matches: 542, Mismatches: 126, Indels: 32
0.77 0.18 0.05
Matches are distributed among these distances:
42 6 0.01
43 113 0.21
44 332 0.61
45 91 0.17
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
TAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTCGTGAAG
Found at i:6466239 original size:132 final size:132
Alignment explanation
Indices: 6466083--6466797 Score: 1157
Period size: 132 Copynumber: 5.4 Consensus size: 132
6466073 AATAGATTGA
* *
6466083 AGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCTGATCCTATCTTCC
1 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
*
6466148 TATATTGGTAGGAAATGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
66 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
6466213 GC
131 GC
*
6466215 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCC
1 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
6466280 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
66 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
6466345 GC
131 GC
* * *
6466347 AGAAAGCAGATCTTATCTTCATGTATTGGCATGAAGTAGATCGAAGGTAGCAGATCCTATCTTCC
1 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
6466412 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCAT-TTGGTGGCGAAGTAGATC
66 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
6466476 GC
131 GC
* * * **
6466478 AGAAAGTAGATCTTGTCTTCATGTATTGGTGTGAAGTAGATCGAAGATAGCAGGTCCGGTCTTCC
1 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
* *
6466543 TATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTACCCATATTGGTGGCGAAGTAGATC
66 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
6466608 GC
131 GC
*
6466610 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCC
1 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
* * * * * *
6466675 TATATTGATAGAAAGTGGATCCAAGATACAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC
66 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
*
6466740 GA
131 GC
** * *
6466742 AGAAAGCAGATCTTGTCTTC--CCATCTGGTGGTGAAGTAGATCGAAGAAAGCAGATC
1 AGAAAGCAGATCTTGTCTTCATGTAT-TGG-CGTGAAGTAGATCGAAGATAGCAGATC
6466798 TTGTCCCTGT
Statistics
Matches: 546, Mismatches: 34, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
130 2 0.00
131 124 0.23
132 420 0.77
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (132 bp):
AGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCC
TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
GC
Found at i:6467023 original size:40 final size:40
Alignment explanation
Indices: 6466974--6467286 Score: 283
Period size: 40 Copynumber: 7.7 Consensus size: 40
6466964 AAACCACAGA
**
6466974 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGTATCAAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCAAATCAAG
* * * *
6467014 TCTTATCTCCCTAAGTAGTAGCGGAGCGGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-AAATCA-AG
**
6467055 ATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCGGATCAAATCAAG
* * * *
6467096 TCTTATCTCCCCAAGCAGTAGCGGAGCGGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-AAATCA-AG
* ***
6467137 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCTTCAAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCGGATCAAATCAAG
* * *
6467178 TCTTATCTCCCCAAGCAATAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCGGATC-AAATCA-AG
* ** * *
6467219 ATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAG
1 -TCTTATCT-CCCTAAGCAATAGTGGAGCGGATCAAATCAAG
*
6467260 TCTTATCTCCCTAAGCAGTAGTGGAGC
1 TCTTATCTCCCTAAGCAATAGTGGAGC
6467287 AGACTAAAAC
Statistics
Matches: 221, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
39 3 0.01
40 115 0.52
41 14 0.06
42 86 0.39
43 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCGGATCAAATCAAG
Found at i:6467182 original size:122 final size:122
Alignment explanation
Indices: 6466963--6467289 Score: 290
Period size: 122 Copynumber: 2.7 Consensus size: 122
6466953 GAATAGAGTG
* * * ** * *
6466963 AAAACCACAGATCTTA-TCTCCCTAAGCAATAGTGGAGCGGATCGTATCAAGTCTTATCTCCCTA
1 AAAACCACAGATCTTATTC-CCCTAAGCAGTAGCGGAGCAGATCAAACCCAGTCTTATCTCCCTA
* * * * **** * *
6467027 AGTAGTAGCGGAGCGGA-CAAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATC
65 AGCAATAGTGGAGCAGATC-GCTTCA-AG-TCTTATCTCCCCAAGCAATAGTGGAGCAGA-C
** * *
6467088 -GCATCA-AG-TCTTATCTCCCC-AAGCAGTAGCGGAGCGGA-CAAAACCACAGATCTTATCTCC
1 AAAACCACAGATCTTAT-TCCCCTAAGCAGTAGCGGAGCAGATC-AAACC-CAG-TCTTATCTCC
6467148 CTAAGCAATAGTGGAGCAGATCGCTTCAAGTCTTATCTCCCCAAGCAATAGTGGAGCAGAC
62 CTAAGCAATAGTGGAGCAGATCGCTTCAAGTCTTATCTCCCCAAGCAATAGTGGAGCAGAC
* * * *
6467209 AAAACCACAGATCTTATTCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTCCCTAA
1 AAAACCACAGATCTTATTCCCCTAAGCAGTAGCGGAGCAGATCAAACCCAGTCTTATCTCCCTAA
*
6467274 GCAGTAGTGGAGCAGA
66 GCAATAGTGGAGCAGA
6467290 CTAAAACCAC
Statistics
Matches: 163, Mismatches: 28, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
121 2 0.01
122 83 0.51
123 19 0.12
124 57 0.35
125 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (122 bp):
AAAACCACAGATCTTATTCCCCTAAGCAGTAGCGGAGCAGATCAAACCCAGTCTTATCTCCCTAA
GCAATAGTGGAGCAGATCGCTTCAAGTCTTATCTCCCCAAGCAATAGTGGAGCAGAC
Found at i:6467312 original size:82 final size:82
Alignment explanation
Indices: 6466963--6467305 Score: 508
Period size: 82 Copynumber: 4.2 Consensus size: 82
6466953 GAATAGAGTG
* * *
6466963 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGTATCAAGTCTTATCTCCCTAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCCAA
* *
6467028 GTAGTAGCGGAGCGGAC
66 GCAGTAGCGGAGCAGAC
*
6467045 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAGTCTTATCTCCCCAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCCAA
*
6467110 GCAGTAGCGGAGCGGAC
66 GCAGTAGCGGAGCAGAC
*
6467127 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCTTCAAGTCTTATCTCCCCAA
1 AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCCAA
* *
6467192 GCAATAGTGGAGCAGAC
66 GCAGTAGCGGAGCAGAC
* * * * *
6467209 AAAACCACAGATCTTAT-TCCCCTAAGCAGTAGTGGAGTAGATCACATCCAGTCTTATCTCCCTA
1 AAAACCACAGATCTTATCT-CCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCCA
*
6467273 AGCAGTAGTGGAGCAGAC
65 AGCAGTAGCGGAGCAGAC
*
6467291 TAAAACCACAAATCT
1 -AAAACCACAGATCT
6467306 CATCCCCATG
Statistics
Matches: 243, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
81 1 0.00
82 229 0.94
83 13 0.05
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (82 bp):
AAAACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCCAA
GCAGTAGCGGAGCAGAC
Found at i:6476000 original size:16 final size:16
Alignment explanation
Indices: 6475979--6476009 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6475969 AGACACATGA
*
6475979 TCAAAATAGAAAAAAG
1 TCAAAAAAGAAAAAAG
6475995 TCAAAAAAGAAAAAA
1 TCAAAAAAGAAAAAA
6476010 AAACATAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.10, T:0.10
Consensus pattern (16 bp):
TCAAAAAAGAAAAAAG
Found at i:6479541 original size:31 final size:31
Alignment explanation
Indices: 6479506--6479645 Score: 137
Period size: 31 Copynumber: 4.5 Consensus size: 31
6479496 TTAATATAAC
* *
6479506 ATTTGGTACTTGAGCTTGACACTTTTTCCTA
1 ATTTGGTACTTAAACTTGACACTTTTTCCTA
***
6479537 ATTTGGTACTTAAA-TT--TTTTTTTGGTCC-A
1 ATTTGGTACTTAAACTTGACACTTTT--TCCTA
6479566 ATTTGGTA-TCTAAACTTGACACTTTTTTCCTA
1 ATTTGGTACT-TAAACTTGACAC-TTTTTCCTA
* *
6479598 ATTTGGTACCTAAACTTGACACTTTTTCTTA
1 ATTTGGTACTTAAACTTGACACTTTTTCCTA
*
6479629 AGTTGGTACTTAAACTT
1 ATTTGGTACTTAAACTT
6479646 TTGGGGGTGC
Statistics
Matches: 88, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
28 5 0.06
29 13 0.15
30 7 0.08
31 38 0.43
32 21 0.24
33 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACACTTTTTCCTA
Found at i:6480197 original size:28 final size:28
Alignment explanation
Indices: 6480143--6480197 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
6480133 AAAAAATGCC
* ***
6480143 AAGTTCAGGTATCAAATTGGGCCAAAAA
1 AAGTTCAGGTATCAAATTAGAAAAAAAA
*
6480171 AAGTTTAGGTATCAAATTAGAAAAAAA
1 AAGTTCAGGTATCAAATTAGAAAAAAA
6480198 GTGTCAAGTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.24
Consensus pattern (28 bp):
AAGTTCAGGTATCAAATTAGAAAAAAAA
Found at i:6480219 original size:60 final size:59
Alignment explanation
Indices: 6480090--6480219 Score: 145
Period size: 59 Copynumber: 2.2 Consensus size: 59
6480080 TAATAAATTT
* *
6480090 ATGTACCAAATTGAACCTAAAAAAAGCTTAACTACCAATTAGGAAAAAATGCCAAGTTC
1 ATGTACCAAATTGAACCTAAAAAAAGCTTAACTACAAATTAGAAAAAAATGCCAAGTTC
* * ** * ** *
6480149 AGGTATCAAATTGGGCC-AAAAAAAGTTTAGGTATCAAATTAGAAAAAAAGTGTCAAGTTC
1 ATGTACCAAATTGAACCTAAAAAAAGCTTAACTA-CAAATTAGAAAAAAA-TGCCAAGTTC
6480209 ATGTACCAAAT
1 ATGTACCAAAT
6480220 GTTATATTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
58 13 0.23
59 26 0.46
60 18 0.32
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (59 bp):
ATGTACCAAATTGAACCTAAAAAAAGCTTAACTACAAATTAGAAAAAAATGCCAAGTTC
Found at i:6490870 original size:16 final size:18
Alignment explanation
Indices: 6490843--6490875 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6490833 AACCCATGTT
6490843 TATAATTTTTTA-ATAAA
1 TATAATTTTTTACATAAA
6490860 TATAA-TTTTTACATAA
1 TATAATTTTTTACATAA
6490876 TATTTCAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (18 bp):
TATAATTTTTTACATAAA
Found at i:6501143 original size:16 final size:16
Alignment explanation
Indices: 6501122--6501158 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
6501112 TTGGTTCGCT
6501122 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
6501138 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
6501154 GTAAT
1 GTAAT
6501159 AACAAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.35, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:6501412 original size:18 final size:17
Alignment explanation
Indices: 6501391--6501425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6501381 TTATTATTAA
*
6501391 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6501409 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6501426 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6501597 original size:47 final size:46
Alignment explanation
Indices: 6501528--6501786 Score: 193
Period size: 47 Copynumber: 5.7 Consensus size: 46
6501518 TTAATTAAAA
*
6501528 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * *
6501575 TATATGAATTTGTATAATTTAAAATAATTAT--TATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * *
6501620 TA-AT-AATAATATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
* *
6501666 TATATGAATTTATATAATTTAAAATAA-T-TAATATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * *
6501711 TA-AT-AATGATATATAATTTCATAAA-ATTTTTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-A-AAATAATTATAATAATAAATTTTCT
6501757 TATATGAATTTATATAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
6501787 ATATTAAATA
Statistics
Matches: 166, Mismatches: 23, Indels: 47
0.70 0.10 0.20
Matches are distributed among these distances:
43 6 0.04
44 43 0.26
45 19 0.11
46 22 0.13
47 66 0.40
48 10 0.06
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:6501658 original size:91 final size:91
Alignment explanation
Indices: 6501562--6501824 Score: 490
Period size: 91 Copynumber: 2.9 Consensus size: 91
6501552 TAATTATAAC
* *
6501562 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
6501627 AATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
6501653 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
6501718 GATATATAATTTCATAAAATTTTTGA
66 GATATATAATTTCATAAAATTCTTGA
6501744 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
6501809 GATATATAATTTCATA
66 GATATATAATTTCATA
6501825 TATGTTCTTA
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 168 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:6515670 original size:154 final size:154
Alignment explanation
Indices: 6515385--6515698 Score: 601
Period size: 154 Copynumber: 2.0 Consensus size: 154
6515375 AAACATTTTG
*
6515385 ATAGACTGTACAAAAAAAATTGCTTATTACTTTAACCAATAATTGATATACTGATCCCGAACAAC
1 ATAGGCTGTACAAAAAAAATTGCTTATTACTTTAACCAATAATTGATATACTGATCCCGAACAAC
6515450 CATTGACATACAAAAGTTAATGCTGCCAACACCCCAACCACTCTGCATTATCAGAGAAGAAAGAA
66 CATTGACATACAAAAGTTAATGCTGCCAACACCCCAACCACTCTGCATTATCAGAGAAGAAAGAA
6515515 CAGAGAGAAAGGTCCTAGATAGAC
131 CAGAGAGAAAGGTCCTAGATAGAC
* *
6515539 ATAGGCTGTACTAAACAAATTGCTTATTACTTTAACCAATAATTGATATACTGATCCCGAACAAC
1 ATAGGCTGTACAAAAAAAATTGCTTATTACTTTAACCAATAATTGATATACTGATCCCGAACAAC
6515604 CATTGACATACAAAAGTTAATGCTGCCAACACCCCAACCACTCTGCATTATCAGAGAAGAAAGAA
66 CATTGACATACAAAAGTTAATGCTGCCAACACCCCAACCACTCTGCATTATCAGAGAAGAAAGAA
6515669 CAGAGAGAAAGGTCCTAGATAGAC
131 CAGAGAGAAAGGTCCTAGATAGAC
6515693 ATAGGC
1 ATAGGC
6515699 ATAAAAAAGT
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
154 157 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (154 bp):
ATAGGCTGTACAAAAAAAATTGCTTATTACTTTAACCAATAATTGATATACTGATCCCGAACAAC
CATTGACATACAAAAGTTAATGCTGCCAACACCCCAACCACTCTGCATTATCAGAGAAGAAAGAA
CAGAGAGAAAGGTCCTAGATAGAC
Found at i:6521741 original size:2 final size:2
Alignment explanation
Indices: 6521734--6521781 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
6521724 TTTGATAGTA
6521734 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
6521776 AG AG AG
1 AG AG AG
6521782 GAGCCTGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6526802 original size:23 final size:22
Alignment explanation
Indices: 6526776--6526831 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
6526766 TAGTTAAGAC
6526776 TAAAATTAAAAAAATTAAAAAA
1 TAAAATTAAAAAAATTAAAAAA
** *
6526798 TTAAAATTAATCAAATTAAAATA
1 -TAAAATTAAAAAAATTAAAAAA
6526821 TAAATATTAAA
1 TAAA-ATTAAA
6526832 TTCACAACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
TAAAATTAAAAAAATTAAAAAA
Found at i:6526819 original size:15 final size:14
Alignment explanation
Indices: 6526786--6526824 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
6526776 TAAAATTAAA
6526786 AAAATTAAAAAATT
1 AAAATTAAAAAATT
*
6526800 AAAATTAATCAAATT
1 AAAATTAA-AAAATT
6526815 AAAATATAAA
1 AAAAT-TAAA
6526825 TATTAAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 8 0.38
15 10 0.48
16 3 0.14
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAATTAAAAAATT
Found at i:6532627 original size:15 final size:15
Alignment explanation
Indices: 6532588--6532629 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6532578 TTAAAATTTT
6532588 ATAA-ATTAAAAATA
1 ATAATATTAAAAATA
*
6532602 ATTATATTAAAAATAA
1 ATAATATTAAAAAT-A
6532618 ATAATA-TAAAAA
1 ATAATATTAAAAA
6532630 GTATTCAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 3 0.12
15 15 0.62
16 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAATATTAAAAATA
Found at i:6533610 original size:21 final size:20
Alignment explanation
Indices: 6533586--6533628 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
6533576 TATAATTCAC
*
6533586 ATACATATATATTTTTCTTAT
1 ATACATATATATATTT-TTAT
6533607 ATACATATATATATTTTTAT
1 ATACATATATATATTTTTAT
6533627 AT
1 AT
6533629 TTTATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (20 bp):
ATACATATATATATTTTTAT
Found at i:6534808 original size:17 final size:14
Alignment explanation
Indices: 6534772--6534800 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6534762 CATAATTAAA
6534772 TAAATTTATTTTTT
1 TAAATTTATTTTTT
6534786 TAAATTTATTTTTT
1 TAAATTTATTTTTT
6534800 T
1 T
6534801 TGTAAATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TAAATTTATTTTTT
Found at i:6547325 original size:16 final size:16
Alignment explanation
Indices: 6547288--6547319 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6547278 ACTTGTATAT
*
6547288 AACTGATTCTGCTAAC
1 AACTAATTCTGCTAAC
6547304 AACTAATTCTGCTAAC
1 AACTAATTCTGCTAAC
6547320 TGCTAACTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (16 bp):
AACTAATTCTGCTAAC
Found at i:6549348 original size:3 final size:3
Alignment explanation
Indices: 6549340--6549373 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
6549330 GGCTTCTCTT
* *
6549340 TGA TGA TGA TGA CGA TGA CGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
6549374 CTTTTGTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (3 bp):
TGA
Found at i:6556469 original size:16 final size:16
Alignment explanation
Indices: 6556432--6556463 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
6556422 TTTCCAGGAG
6556432 AAGAAAGATTATGCCT
1 AAGAAAGATTATGCCT
6556448 AAGAAAGATTATGCCT
1 AAGAAAGATTATGCCT
6556464 GTGAAAAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (16 bp):
AAGAAAGATTATGCCT
Found at i:6558746 original size:5 final size:5
Alignment explanation
Indices: 6558736--6558779 Score: 79
Period size: 5 Copynumber: 8.6 Consensus size: 5
6558726 GTATTACTTA
6558736 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATTATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT A-TATT ATA
6558780 ATAACAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:6558867 original size:12 final size:13
Alignment explanation
Indices: 6558850--6558878 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
6558840 AAAGGAGAGA
6558850 AAAGAAAAAT-AG
1 AAAGAAAAATGAG
6558862 AAAGAAAAATGAG
1 AAAGAAAAATGAG
6558875 AAAG
1 AAAG
6558879 CTAGGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (13 bp):
AAAGAAAAATGAG
Found at i:6559801 original size:40 final size:39
Alignment explanation
Indices: 6559694--6559825 Score: 124
Period size: 40 Copynumber: 3.4 Consensus size: 39
6559684 TTACAAGTCA
* * *
6559694 ATGAGACACGGGGTGTCAATCTATTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAAT-TATTACTTCGG-TTTATCCG
* * * *
6559735 ATGAGGCACTAGGTGCCAA-T-TTACTTCGGTTTAGCCG
1 ATGAGACACTGGGTGTCAATTATTACTTCGGTTTATCCG
**
6559772 ATGAGACACTGGGTGTCAACTTATTACTTCGAATTATCCG
1 ATGAGACACTGGGTGTCAA-TTATTACTTCGGTTTATCCG
**
6559812 ATGAGGTACTGGGT
1 ATGAGACACTGGGT
6559826 ACCAAACTGA
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 21 0.29
38 9 0.12
39 2 0.03
40 26 0.36
41 15 0.21
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (39 bp):
ATGAGACACTGGGTGTCAATTATTACTTCGGTTTATCCG
Found at i:6566257 original size:7 final size:7
Alignment explanation
Indices: 6566247--6566275 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
6566237 ATTGGTCGTT
6566247 GGGGCGA
1 GGGGCGA
6566254 GGGGCGA
1 GGGGCGA
6566261 GGGGCGA
1 GGGGCGA
6566268 GGGGCGA
1 GGGGCGA
6566275 G
1 G
6566276 TGGGGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.72, T:0.00
Consensus pattern (7 bp):
GGGGCGA
Found at i:6582473 original size:96 final size:96
Alignment explanation
Indices: 6582341--6582540 Score: 244
Period size: 96 Copynumber: 2.1 Consensus size: 96
6582331 GGGTTTTGGA
* *
6582341 TTTAG-GTTTA-GAGTTTTAAAGAAAAAATTAAATAAATAAAGGATTAGGGTTTCTTAATTAAAT
1 TTTAGTGTTTATG-GTTTTAAAGAAAAAATTAAATAAATAAAGGATTAGGGTTACTTAAGTAAAT
* *
6582404 TAATTATAAA-ATTTTCAAAATTAGATTAGGG
65 TAATTATAAATATTTTAAAAATCAGATTAGGG
* * * * * * *
6582435 TTTTGTGTTTATGGTTTTCAAGGAAAAAATTAATTAAATTAGGGTTTAGGGTTACTTGAGTAAAT
1 TTTAGTGTTTATGGTTTT-AAAGAAAAAATTAAATAAATAAAGGATTAGGGTTACTTAAGTAAAT
*
6582500 TAATTATAAATTTTTTTAAAAATCAGATTAGGG
65 TAATTATAAA-TATTTTAAAAATCAGATTAGGG
6582533 TTTAGTGT
1 TTTAGTGT
6582541 AGAGGTGTCC
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
94 4 0.05
95 10 0.11
96 49 0.56
98 25 0.28
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.41
Consensus pattern (96 bp):
TTTAGTGTTTATGGTTTTAAAGAAAAAATTAAATAAATAAAGGATTAGGGTTACTTAAGTAAATT
AATTATAAATATTTTAAAAATCAGATTAGGG
Found at i:6583399 original size:61 final size:61
Alignment explanation
Indices: 6583214--6583406 Score: 222
Period size: 58 Copynumber: 3.3 Consensus size: 61
6583204 ATATTGTATT
* *
6583214 ATTTATATTTT-TTAAATGAAATAATATAGAAATACTCAAAATATTGCCTTATTTAAAAGA
1 ATTTATATTTTATTAAATGAAATAATATAGAAATATTCAAAATATTGTCTTATTTAAAAGA
* * * * ** * *
6583274 ATTTATATTTTATT-AA--AAATATTAAAG-TATATT-ACAAT-TACT-TTATTCAAAACA
1 ATTTATATTTTATTAAATGAAATAATATAGAAATATTCAAAATATTGTCTTATTTAAAAGA
*
6583328 ATGTTTTATTTTATTAAATGAAATAATATAGAAATATTCAAAATATTGTCTTATTTAAAAGA
1 AT-TTATATTTTATTAAATGAAATAATATAGAAATATTCAAAATATTGTCTTATTTAAAAGA
6583390 ATTTATATTTTATTAAA
1 ATTTATATTTTATTAAA
6583407 ATATAAAAGT
Statistics
Matches: 104, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
54 12 0.12
55 12 0.12
56 6 0.06
57 4 0.04
58 18 0.17
59 5 0.05
60 17 0.16
61 18 0.17
62 12 0.12
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (61 bp):
ATTTATATTTTATTAAATGAAATAATATAGAAATATTCAAAATATTGTCTTATTTAAAAGA
Found at i:6583466 original size:34 final size:35
Alignment explanation
Indices: 6583406--6583484 Score: 133
Period size: 34 Copynumber: 2.3 Consensus size: 35
6583396 ATTTTATTAA
6583406 AATATAAAAGTAAATTTCTATATTATTACATGAAAT
1 AATATAAAAG-AAATTTCTATATTATTACATGAAAT
*
6583442 AATATAAAAG-AATTTCTATTTTATTACATGAAAT
1 AATATAAAAGAAATTTCTATATTATTACATGAAAT
6583476 AATATAAAA
1 AATATAAAA
6583485 ATATTCAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
34 32 0.76
36 10 0.24
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (35 bp):
AATATAAAAGAAATTTCTATATTATTACATGAAAT
Found at i:6584028 original size:30 final size:30
Alignment explanation
Indices: 6583994--6584054 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6583984 TGTTAGGCTG
* * *
6583994 GGTGACTGTGTCGGTGCTGTTGCTGGGCCT
1 GGTGACTGTGGCGGCGCTGTTGATGGGCCT
* *
6584024 GGTGATTGTGGGGGCGCTGTTGATGGGCCT
1 GGTGACTGTGGCGGCGCTGTTGATGGGCCT
6584054 G
1 G
6584055 CGTCGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.05, C:0.16, G:0.48, T:0.31
Consensus pattern (30 bp):
GGTGACTGTGGCGGCGCTGTTGATGGGCCT
Found at i:6584561 original size:7 final size:7
Alignment explanation
Indices: 6584551--6584576 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
6584541 TTATATACAT
6584551 AATACTA
1 AATACTA
6584558 AATACTA
1 AATACTA
6584565 AATACTA
1 AATACTA
6584572 AATAC
1 AATAC
6584577 GAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:6585637 original size:11 final size:11
Alignment explanation
Indices: 6585623--6585692 Score: 72
Period size: 11 Copynumber: 6.4 Consensus size: 11
6585613 GAGAGCTTTA
6585623 AGAGGAATTTG
1 AGAGGAATTTG
6585634 AGAGGAATTTG
1 AGAGGAATTTG
* *
6585645 AGAGAAATATG
1 AGAGGAATTTG
6585656 AGA-GAATATTGG
1 AGAGGAAT-TT-G
* *
6585668 AGAGAAATATG
1 AGAGGAATTTG
6585679 AGA-GAATTTG
1 AGAGGAATTTG
6585689 AGAG
1 AGAG
6585693 AAAGGATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
10 11 0.23
11 28 0.60
12 5 0.11
13 3 0.06
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:6585674 original size:23 final size:21
Alignment explanation
Indices: 6585623--6585695 Score: 101
Period size: 23 Copynumber: 3.3 Consensus size: 21
6585613 GAGAGCTTTA
* *
6585623 AGAGGAATTTGAGAGGAATTTG
1 AGAGAAATATGAGA-GAATTTG
6585645 AGAGAAATATGAGAGAATATTGG
1 AGAGAAATATGAGAGAAT-TT-G
6585668 AGAGAAATATGAGAGAATTTG
1 AGAGAAATATGAGAGAATTTG
6585689 AGAGAAA
1 AGAGAAA
6585696 GGATTTAAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.26
22 16 0.34
23 19 0.40
ACGTcount: A:0.47, C:0.00, G:0.32, T:0.22
Consensus pattern (21 bp):
AGAGAAATATGAGAGAATTTG
Found at i:6603667 original size:15 final size:17
Alignment explanation
Indices: 6603647--6603686 Score: 57
Period size: 15 Copynumber: 2.4 Consensus size: 17
6603637 TTTCTTTTTC
6603647 AGAAAGAAAA-AAAA-A
1 AGAAAGAAAAGAAAAGA
6603662 AGAAAGAAAAGAAAAGA
1 AGAAAGAAAAGAAAAGA
6603679 AGAGAAGA
1 AGA-AAGA
6603687 TGTGCTTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 4 0.18
17 4 0.18
18 4 0.18
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
AGAAAGAAAAGAAAAGA
Found at i:6612069 original size:25 final size:25
Alignment explanation
Indices: 6612022--6612069 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
6612012 TTGCATAATT
* *
6612022 ATGTCATGATTCTATCACTACAATC
1 ATGTCATGATTCTACCACAACAATC
6612047 ATGTCA-GATTACTACCACAACAA
1 ATGTCATGATT-CTACCACAACAA
6612070 CCTTCATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (25 bp):
ATGTCATGATTCTACCACAACAATC
Found at i:6619735 original size:31 final size:31
Alignment explanation
Indices: 6619642--6619737 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
6619632 GGCAAATTAC
* *
6619642 AAGAGTAATTTAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
*
6619673 AAGAGTAATTGAATTCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
6619705 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
6619736 AA
1 AA
6619738 ATTATCTAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 31 0.52
32 29 0.48
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:6620317 original size:12 final size:12
Alignment explanation
Indices: 6620300--6620325 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6620290 GTCGTAGTCG
6620300 GAGGATGTATTA
1 GAGGATGTATTA
6620312 GAGGATGTATTA
1 GAGGATGTATTA
6620324 GA
1 GA
6620326 AAAAGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (12 bp):
GAGGATGTATTA
Found at i:6622095 original size:3 final size:3
Alignment explanation
Indices: 6622087--6622121 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
6622077 TATAATTTAA
6622087 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
6622122 CTAAAATTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6634378 original size:16 final size:16
Alignment explanation
Indices: 6634357--6634389 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6634347 TTGAACTCTG
6634357 TTGCAACTTGAGGTTA
1 TTGCAACTTGAGGTTA
6634373 TTGCAACTTGAGGTTA
1 TTGCAACTTGAGGTTA
6634389 T
1 T
6634390 CTATGAAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (16 bp):
TTGCAACTTGAGGTTA
Found at i:6646544 original size:26 final size:26
Alignment explanation
Indices: 6646508--6646557 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6646498 ACAACGAGAA
*
6646508 TGTCAACTAAACTAGTAGGGGTGATT
1 TGTCAACTAAACTAGTAGAGGTGATT
*
6646534 TGTCAACTAAATTAGTAGAGGTGA
1 TGTCAACTAAACTAGTAGAGGTGA
6646558 GTTTAGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (26 bp):
TGTCAACTAAACTAGTAGAGGTGATT
Found at i:6647978 original size:11 final size:11
Alignment explanation
Indices: 6647961--6647998 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
6647951 TTTTTAATCA
6647961 AATATATATTT
1 AATATATATTT
* *
6647972 TATATATATTA
1 AATATATATTT
6647983 AATATATATTT
1 AATATATATTT
6647994 AATAT
1 AATAT
6647999 GAGTCGGGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATATATATTT
Found at i:6661186 original size:19 final size:18
Alignment explanation
Indices: 6661164--6661199 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6661154 TAAAATTTAA
*
6661164 ATTTTTAGTTTTTTTAAAT
1 ATTTTTA-TATTTTTAAAT
6661183 ATTTTTATATTTTTAAA
1 ATTTTTATATTTTTAAA
6661200 ATTATTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
ATTTTTATATTTTTAAAT
Found at i:6661201 original size:19 final size:19
Alignment explanation
Indices: 6661149--6661211 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 19
6661139 CATGTTAATT
6661149 TTTTTTAAAATTTAAATTTTTA
1 TTTTTTAAAA-TT--ATTTTTA
*
6661171 GTTTTTTTAAA-TATTTTTA
1 -TTTTTTAAAATTATTTTTA
6661190 TATTTTTAAAATTATTTGTTA
1 T-TTTTTAAAATTATTT-TTA
6661211 T
1 T
6661212 CATGACATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 1 0.03
19 15 0.43
20 5 0.14
21 5 0.14
23 9 0.26
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTTAAAATTATTTTTA
Found at i:6664766 original size:31 final size:31
Alignment explanation
Indices: 6664731--6664791 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
6664721 TACAAAATGG
* *
6664731 TTATTTAACTATTCGAAA-TTTTTCATTTAAA
1 TTATTAAACTATTCAAAAGTTTTT-ATTTAAA
*
6664762 TTATTAAATTATTCAAAAGTTTTTATTTAA
1 TTATTAAACTATTCAAAAGTTTTTATTTAA
6664792 GTCATTGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (31 bp):
TTATTAAACTATTCAAAAGTTTTTATTTAAA
Found at i:6668088 original size:19 final size:19
Alignment explanation
Indices: 6668047--6668088 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
6668037 TCAGAATTTT
* *
6668047 TATTTTTATTTTTAAATTG
1 TATTTTTATTTATAAATTA
6668066 TATTTTTATTTAATAAA-TA
1 TATTTTTATTT-ATAAATTA
6668085 TATT
1 TATT
6668089 ATTTTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTTATTTATAAATTA
Found at i:6668489 original size:19 final size:19
Alignment explanation
Indices: 6668448--6668489 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
6668438 TCAAAATTGT
* *
6668448 TATTTTTATTTTTAAACTG
1 TATTTTTATTTATAAACTA
6668467 TATTTTTATTTAATAAA-TA
1 TATTTTTATTT-ATAAACTA
6668486 TATT
1 TATT
6668490 ATTTTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTTTATTTATAAACTA
Found at i:6672169 original size:21 final size:20
Alignment explanation
Indices: 6672122--6672169 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
6672112 ATTTAGTTGT
6672122 TAATGTTTATATTTTTTTTTA
1 TAAT-TTTATATTTTTTTTTA
* *
6672143 TAAATTTTATCTTTATTTTTTC
1 T-AATTTTATATTT-TTTTTTA
6672165 TAATT
1 TAATT
6672170 AAATTTAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TAATTTTATATTTTTTTTTA
Found at i:6675407 original size:51 final size:51
Alignment explanation
Indices: 6675326--6675433 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
6675316 AGTACTTCTC
*
6675326 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAATGACA
*
6675377 AGTGGCAAGTGATAAGT-GATAGCTTCAGCTACACTTATCTGATCAATGACA
1 AGTGACAAGTGATAAGTAG-TAGCTTCAGCTACACTTATCTGATCAATGACA
6675428 AGTGAC
1 AGTGAC
6675434 TTATCTAATC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
50 1 0.02
51 52 0.98
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAATGACA
Found at i:6675435 original size:23 final size:23
Alignment explanation
Indices: 6675409--6675455 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
6675399 CTTCAGCTAC
*
6675409 ACTTATCTGATCAATGACAAGTG
1 ACTTATCTAATCAATGACAAGTG
*
6675432 ACTTATCTAATCAGTGACAAGTG
1 ACTTATCTAATCAATGACAAGTG
6675455 A
1 A
6675456 TAAGTGATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (23 bp):
ACTTATCTAATCAATGACAAGTG
Found at i:6675495 original size:44 final size:44
Alignment explanation
Indices: 6675432--6675552 Score: 163
Period size: 44 Copynumber: 2.8 Consensus size: 44
6675422 ATGACAAGTG
*
6675432 ACTTATCTAATCAGTGACAAGTGATAAGTGATAGCTTTAGCTAC
1 ACTTATCTGATCAGTGACAAGTGATAAGTGATAGCTTTAGCTAC
* * *
6675476 ACTTATCTGATCAGTGACAAGTAATGAGTGGTAGCTTTAGCTAC
1 ACTTATCTGATCAGTGACAAGTGATAAGTGATAGCTTTAGCTAC
* * *
6675520 ACTTATATGATTAG-GTACAAGTGACAAGTGATA
1 ACTTATCTGATCAGTG-ACAAGTGATAAGTGATA
6675553 AATGTGATCC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
43 1 0.02
44 65 0.98
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (44 bp):
ACTTATCTGATCAGTGACAAGTGATAAGTGATAGCTTTAGCTAC
Found at i:6675550 original size:118 final size:114
Alignment explanation
Indices: 6675324--6675530 Score: 305
Period size: 118 Copynumber: 1.8 Consensus size: 114
6675314 TGAGTACTTC
6675324 TCAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGA
1 TCAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGT-G-AAGTG-
*
6675389 TAAGTGATAGCTTCAGCTACACTTATCTGATCAATGACAAGTGACTTATCTAA
63 -AAGTGATAGCTTCAGCTACACTTATATGATCAATGACAAGTGACTTATCTAA
*
6675442 TCAGTGACAAGTGATAAGT-GATAGCTTTAGCTACACTTATCTGATCAGTGACAAGT-AA-TG-A
1 TCAGTGACAAGTGATAAGTAG-TAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGAAGTGAA
* *
6675503 GTGGTAGCTTTAGCTACACTTATATGAT
65 GTGATAGCTTCAGCTACACTTATATGAT
6675531 TAGGTACAAG
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
111 26 0.31
114 2 0.02
115 2 0.02
117 1 0.01
118 53 0.63
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (114 bp):
TCAGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGAAGTGAAG
TGATAGCTTCAGCTACACTTATATGATCAATGACAAGTGACTTATCTAA
Found at i:6688261 original size:22 final size:22
Alignment explanation
Indices: 6688236--6688279 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6688226 CATATAAAAT
*
6688236 TATAATAAATCTTTAATAGTAA
1 TATAATAAATCTTTAACAGTAA
*
6688258 TATAATAAGTCTTTAACAGTAA
1 TATAATAAATCTTTAACAGTAA
6688280 ACACAGAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (22 bp):
TATAATAAATCTTTAACAGTAA
Found at i:6691022 original size:3 final size:3
Alignment explanation
Indices: 6691014--6691044 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
6691004 TCTCGAGGTC
*
6691014 CAT CAT CAT CAT CAT CAT CAT CAT CAC CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
6691045 CTGTAGGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (3 bp):
CAT
Found at i:6696153 original size:318 final size:318
Alignment explanation
Indices: 6695576--6696211 Score: 1218
Period size: 318 Copynumber: 2.0 Consensus size: 318
6695566 CAAGAAAAAT
6695576 CTTCCACTTTCTCAATTGGATAAAGAGATTCAAAGTTTTTCATATTGAAAAAATAAACTATGCTT
1 CTTCCACTTTCTCAATTGGATAAAGAGATTCAAAGTTTTTCATATTGAAAAAATAAACTATGCTT
* *
6695641 CATTTAACCAGTGCCAATGGTCAAATCAAATCCTTTTTCTGAATCACTCTGGATGTAAAACATGA
66 CATTTAACCAGTGCCAATGGTCAAATCAAATCCTCTTTCTGAATCACTCGGGATGTAAAACATGA
* *
6695706 AGGCAAAACATTTCGATCAAGGTCAGAATGATTAAAGATGCAAAAGCAACATACAACATTTTACG
131 AGGCAAAACATTTCGATCAAGGTCAGAATGATTAAAGATGCAAAAGCAACATACAACAGTTAACG
*
6695771 ACAAAATTAGCAAAATAGCCATTAATTTACTCATTGAGTAGAATCCAGAACCAAATATGCAGATA
196 ACAAAATTAGCAAAATAGCCATTAATTTACTCATTGAGTAGAATCAAGAACCAAATATGCAGATA
6695836 CTGGGAGAGAAAAGAAAATCCTAAAGCTAAAATTAAATTTATGCAAATTTCATCTGGG
261 CTGGGAGAGAAAAGAAAATCCTAAAGCTAAAATTAAATTTATGCAAATTTCATCTGGG
6695894 CTTCCACTTTCTCAATTGGATAAAGAGATTCAAAGTTTTTCATATTGAAAAAATAAACTATGCTT
1 CTTCCACTTTCTCAATTGGATAAAGAGATTCAAAGTTTTTCATATTGAAAAAATAAACTATGCTT
6695959 CATTTAACCAGTGCCAATGGTCAAATCAAATCCTCTTTCTGAATCACTCGGGATGTAAAACATGA
66 CATTTAACCAGTGCCAATGGTCAAATCAAATCCTCTTTCTGAATCACTCGGGATGTAAAACATGA
*
6696024 AGGCAAAACATTTTGATCAAGGTCAGAATGATTAAAGATGCAAAAGCAACATACAACAGTTAACG
131 AGGCAAAACATTTCGATCAAGGTCAGAATGATTAAAGATGCAAAAGCAACATACAACAGTTAACG
6696089 ACAAAATTAGCAAAATAGCCATTAATTTACTCATTGAGTAGAATCAAGAACCAAATATGCAGATA
196 ACAAAATTAGCAAAATAGCCATTAATTTACTCATTGAGTAGAATCAAGAACCAAATATGCAGATA
6696154 CTGGGAGAGAAAAGAAAATCCTAAAGCTAAAATTAAATTTATGCAAATTTCATCTGGG
261 CTGGGAGAGAAAAGAAAATCCTAAAGCTAAAATTAAATTTATGCAAATTTCATCTGGG
6696212 TTCTAGCAGG
Statistics
Matches: 312, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
318 312 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.28
Consensus pattern (318 bp):
CTTCCACTTTCTCAATTGGATAAAGAGATTCAAAGTTTTTCATATTGAAAAAATAAACTATGCTT
CATTTAACCAGTGCCAATGGTCAAATCAAATCCTCTTTCTGAATCACTCGGGATGTAAAACATGA
AGGCAAAACATTTCGATCAAGGTCAGAATGATTAAAGATGCAAAAGCAACATACAACAGTTAACG
ACAAAATTAGCAAAATAGCCATTAATTTACTCATTGAGTAGAATCAAGAACCAAATATGCAGATA
CTGGGAGAGAAAAGAAAATCCTAAAGCTAAAATTAAATTTATGCAAATTTCATCTGGG
Found at i:6718833 original size:17 final size:17
Alignment explanation
Indices: 6718811--6718888 Score: 80
Period size: 16 Copynumber: 5.0 Consensus size: 17
6718801 AAAATTTATT
6718811 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
6718828 TTAAAAA-A----AAAA
1 TTAAAAATATTTTAAAA
*
6718840 TTAAAAGTATTTTAAAA
1 TTAAAAATATTTTAAAA
*
6718857 TT-AAAATACTTTAAAA
1 TTAAAAATATTTTAAAA
*
6718873 TTAAAAA-AATTTAAAA
1 TTAAAAATATTTTAAAA
6718889 AAAGTATTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
12 10 0.20
13 1 0.02
16 23 0.45
17 17 0.33
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:6718889 original size:17 final size:17
Alignment explanation
Indices: 6718835--6718889 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
6718825 AAATTAAAAA
**
6718835 AAAAATTAAAAGTATTT
1 AAAAATTAAAAAAATTT
* * *
6718852 TAAAATTAAAATACTTT
1 AAAAATTAAAAAAATTT
6718869 -AAAATTAAAAAAATTT
1 AAAAATTAAAAAAATTT
6718885 AAAAA
1 AAAAA
6718890 AAGTATTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAAATTAAAAAAATTT
Found at i:6718892 original size:46 final size:44
Alignment explanation
Indices: 6718814--6718902 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 44
6718804 ATTTATTTTA
*
6718814 AAAATATTTTAAAATTAAAAAAAAAATTAAAAGTATTTTAAAATT
1 AAAATACTTTAAAATTAAAAAAAAAA-TAAAAGTATTTTAAAATT
6718859 AAAATACTTTAAAATTAAAAAAATTTAAA-AAAAGTATTTTAAAA
1 AAAATACTTTAAAATTAAAAAAA---AAATAAAAGTATTTTAAAA
6718903 GTATTTTCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
45 22 0.55
46 15 0.38
48 3 0.08
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (44 bp):
AAAATACTTTAAAATTAAAAAAAAAATAAAAGTATTTTAAAATT
Found at i:6718928 original size:40 final size:39
Alignment explanation
Indices: 6718769--6718936 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 39
6718759 ATAAATACCA
**
6718769 AAAAATTATTTTAAAAATTAAAACAAAAATAAAAAATTTATTTT
1 AAAAA-TATTTT-AAAATT--AA-AAAAATAAAAAAAGTATTTT
6718813 AAAAATATTTTAAAATTAAAAAAA-AAATTAAAAGTATTTT
1 AAAAATATTTTAAAATTAAAAAAATAAA--AAAAGTATTTT
*
6718853 AAAATTAAAATACTTTAAAATTAAAAAAATTTAAAAAAAGTATTTT
1 ---A--AAAATATTTTAAAATTAAAAAAA--TAAAAAAAGTATTTT
* * *
6718899 AAAAGTATTTTCAAATTTAAAAAAATAAAAAAATTATT
1 AAAAATATTTT-AAAATTAAAAAAATAAAAAAAGTATT
6718937 GTATTCGGGC
Statistics
Matches: 106, Mismatches: 7, Indels: 26
0.76 0.05 0.19
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 23 0.22
41 8 0.08
42 18 0.17
43 8 0.08
44 5 0.05
45 22 0.21
46 11 0.10
48 3 0.03
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAAATATTTTAAAATTAAAAAAATAAAAAAAGTATTTT
Found at i:6720512 original size:87 final size:87
Alignment explanation
Indices: 6720366--6720533 Score: 327
Period size: 87 Copynumber: 1.9 Consensus size: 87
6720356 ACAGGGGAAA
6720366 CAACTAAATCTGGGATAGGTTTGTTTGTGATAATAGTAGTAGGATCAGGAGGTATAATGAGGAGA
1 CAACTAAATCTGGGATAGGTTTGTTTGTGATAATAGTAGTAGGATCAGGAGGTATAATGAGGAGA
6720431 GTATTAAGGGTCTCATGAATAG
66 GTATTAAGGGTCTCATGAATAG
*
6720453 CAACTAAATCTGGGATAGGTTTGTTTGTGATAGTAGTAGTAGGATCAGGAGGTATAATGAGGAGA
1 CAACTAAATCTGGGATAGGTTTGTTTGTGATAATAGTAGTAGGATCAGGAGGTATAATGAGGAGA
6720518 GTATTAAGGGTCTCAT
66 GTATTAAGGGTCTCAT
6720534 CTTCATTAAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (87 bp):
CAACTAAATCTGGGATAGGTTTGTTTGTGATAATAGTAGTAGGATCAGGAGGTATAATGAGGAGA
GTATTAAGGGTCTCATGAATAG
Found at i:6731197 original size:6 final size:6
Alignment explanation
Indices: 6731181--6731215 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
6731171 AAGTAGCCAT
*
6731181 TTTTCC CTTTCC TTTTCC TTTTCC TTTTCAC TTTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTTTC-C TTTT
6731216 GTTTTAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTTCC
Found at i:6739406 original size:357 final size:357
Alignment explanation
Indices: 6738926--6739638 Score: 1417
Period size: 357 Copynumber: 2.0 Consensus size: 357
6738916 TTGACACTCA
6738926 TGCCTAAGTTCAAGTAACTTATAAGTGCAACTCAGTTTGGCTGATAATTGAATGTCTTGAGGCAC
1 TGCCTAAGTTCAAGTAACTTATAAGTGCAACTCAGTTTGGCTGATAATTGAATGTCTTGAGGCAC
6738991 TTCCTTTTCGCACAAATTCTGTGTTTGATTGGGGTTATTCTAGTACTCTTCTCCATTATCTTTGT
66 TTCCTTTTCGCACAAATTCTGTGTTTGATTGGGGTTATTCTAGTACTCTTCTCCATTATCTTTGT
*
6739056 AGTTATACTCTTAAAGAAGTGGGAAAATGACACAAGATTGAACACCTTTGCTTAATTAATACTTG
131 AGTTATACTCTTAAAGAAGCGGGAAAATGACACAAGATTGAACACCTTTGCTTAATTAATACTTG
6739121 GGCTTATTTGAGATGGCTTTATTATAATGTTAAGATCAACTGTGAATTGCCTCGCTTTATTATGA
196 GGCTTATTTGAGATGGCTTTATTATAATGTTAAGATCAACTGTGAATTGCCTCGCTTTATTATGA
6739186 CATGTTTGATTTCTTTTCTTTTTATACTTAAAAATAAGCTTTTAATTTCACACTTAAAATTTGTA
261 CATGTTTGATTTCTTTTCTTTTTATACTTAAAAATAAGCTTTTAATTTCACACTTAAAATTTGTA
6739251 TTGGACCACTGTTCTTATTAGAGCTGTTTAAG
326 TTGGACCACTGTTCTTATTAGAGCTGTTTAAG
6739283 TGCCTAAGTTCAAGTAACTTATAAGTGCAACTCAGTTTGGCTGATAATTGAATGTCTTGAGGCAC
1 TGCCTAAGTTCAAGTAACTTATAAGTGCAACTCAGTTTGGCTGATAATTGAATGTCTTGAGGCAC
6739348 TTCCTTTTCGCACAAATTCTGTGTTTGATTGGGGTTATTCTAGTACTCTTCTCCATTATCTTTGT
66 TTCCTTTTCGCACAAATTCTGTGTTTGATTGGGGTTATTCTAGTACTCTTCTCCATTATCTTTGT
6739413 AGTTATACTCTTAAAGAAGCGGGAAAATGACACAAGATTGAACACCTTTGCTTAATTAATACTTG
131 AGTTATACTCTTAAAGAAGCGGGAAAATGACACAAGATTGAACACCTTTGCTTAATTAATACTTG
6739478 GGCTTATTTGAGATGGCTTTATTATAATGTTAAGATCAACTGTGAATTGCCTCGCTTTATTATGA
196 GGCTTATTTGAGATGGCTTTATTATAATGTTAAGATCAACTGTGAATTGCCTCGCTTTATTATGA
6739543 CATGTTTGATTTCTTTTCTTTTTATACTTAAAAATAAGCTTTTAATTTCACACTTAAAATTTGTA
261 CATGTTTGATTTCTTTTCTTTTTATACTTAAAAATAAGCTTTTAATTTCACACTTAAAATTTGTA
6739608 TTGGACCACTGTTCTTATTAGAGCTGTTTAA
326 TTGGACCACTGTTCTTATTAGAGCTGTTTAA
6739639 TGTGGCATAG
Statistics
Matches: 355, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
357 355 1.00
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.41
Consensus pattern (357 bp):
TGCCTAAGTTCAAGTAACTTATAAGTGCAACTCAGTTTGGCTGATAATTGAATGTCTTGAGGCAC
TTCCTTTTCGCACAAATTCTGTGTTTGATTGGGGTTATTCTAGTACTCTTCTCCATTATCTTTGT
AGTTATACTCTTAAAGAAGCGGGAAAATGACACAAGATTGAACACCTTTGCTTAATTAATACTTG
GGCTTATTTGAGATGGCTTTATTATAATGTTAAGATCAACTGTGAATTGCCTCGCTTTATTATGA
CATGTTTGATTTCTTTTCTTTTTATACTTAAAAATAAGCTTTTAATTTCACACTTAAAATTTGTA
TTGGACCACTGTTCTTATTAGAGCTGTTTAAG
Found at i:6750636 original size:6 final size:6
Alignment explanation
Indices: 6750625--6750652 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6750615 TTAAATATAC
6750625 AATTGA AATTGA AATTGA AATTGA AATT
1 AATTGA AATTGA AATTGA AATTGA AATT
6750653 ATAAGATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (6 bp):
AATTGA
Found at i:6751367 original size:14 final size:14
Alignment explanation
Indices: 6751345--6751374 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6751335 TTTAATTATT
6751345 ATATATTTAATGAA
1 ATATATTTAATGAA
*
6751359 ATATTTTTAATGAA
1 ATATATTTAATGAA
6751373 AT
1 AT
6751375 TAAAATTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
ATATATTTAATGAA
Found at i:6751512 original size:35 final size:34
Alignment explanation
Indices: 6751446--6751520 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 34
6751436 ATAATTATTT
* *
6751446 TTATTAACGTAAAAAAAATTCACATTGATATATACG
1 TTATTAACGTAAAAAAAATGCACATTCATATAT--G
6751482 TTATTAACGT-AAAAAAATGGCA-ATTCATATATG
1 TTATTAACGTAAAAAAAAT-GCACATTCATATATG
6751515 TTATTA
1 TTATTA
6751521 TAGATAGACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
33 7 0.19
35 17 0.47
36 12 0.33
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (34 bp):
TTATTAACGTAAAAAAAATGCACATTCATATATG
Found at i:6754302 original size:6 final size:6
Alignment explanation
Indices: 6754291--6754315 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6754281 TAAGCATTAA
6754291 AGACAC AGACAC AGACAC AGACAC A
1 AGACAC AGACAC AGACAC AGACAC A
6754316 TACATATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00
Consensus pattern (6 bp):
AGACAC
Found at i:6756804 original size:33 final size:33
Alignment explanation
Indices: 6756765--6756832 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
6756755 TTTAGTTATA
6756765 GTTAATTGTATAAATTTAACGGTTGATATAGTT
1 GTTAATTGTATAAATTTAACGGTTGATATAGTT
6756798 GTTAATTGTATAAATTTAACGGTTGATATAGTT
1 GTTAATTGTATAAATTTAACGGTTGATATAGTT
6756831 GT
1 GT
6756833 ATTTTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (33 bp):
GTTAATTGTATAAATTTAACGGTTGATATAGTT
Found at i:6757118 original size:16 final size:16
Alignment explanation
Indices: 6757097--6757133 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
6757087 GAGTGAAAGG
*
6757097 AAATTGGAAGGATAAA
1 AAATTGAAAGGATAAA
*
6757113 AAATTGAAAGTATAAA
1 AAATTGAAAGGATAAA
6757129 AAATT
1 AAATT
6757134 AAAAACTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.24
Consensus pattern (16 bp):
AAATTGAAAGGATAAA
Found at i:6776920 original size:20 final size:20
Alignment explanation
Indices: 6776886--6776927 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6776876 AACTGTTTAA
** *
6776886 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
6776906 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
6776926 AT
1 AT
6776928 GTGTTTATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:6778971 original size:11 final size:11
Alignment explanation
Indices: 6778954--6778983 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6778944 AGGTTTGACT
6778954 TTGTTGATTGA
1 TTGTTGATTGA
*
6778965 TTTTTGATTGA
1 TTGTTGATTGA
6778976 TTGTTGAT
1 TTGTTGAT
6778984 AGATCATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (11 bp):
TTGTTGATTGA
Found at i:6790418 original size:31 final size:31
Alignment explanation
Indices: 6790383--6790445 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
6790373 TATAATTTTA
*
6790383 TTATTAAATTATTTAAAAGTTTTTATTTAAG
1 TTATTAAATTATTCAAAAGTTTTTATTTAAG
*
6790414 TTATTGAATTATTCAAAAGTTTTTATTTAAG
1 TTATTAAATTATTCAAAAGTTTTTATTTAAG
6790445 T
1 T
6790446 GATTGGGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (31 bp):
TTATTAAATTATTCAAAAGTTTTTATTTAAG
Found at i:6793963 original size:3 final size:3
Alignment explanation
Indices: 6793951--6793991 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
6793941 CTACTACTAC
*
6793951 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6793992 ACAACTAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:6809704 original size:124 final size:124
Alignment explanation
Indices: 6809484--6809728 Score: 472
Period size: 124 Copynumber: 2.0 Consensus size: 124
6809474 TAATCAGCAC
*
6809484 AAGGAATAGACAACAACAACAGCAACAATAGTAAAATTTAATTAATCTGATAATGTTCTATTTAA
1 AAGGAATAGACAACAACAACAGCAACAATAATAAAATTTAATTAATCTGATAATGTTCTATTTAA
*
6809549 AGTTAACCTAATAAGGAAGCCTTTCCAGATGTGAGAAAAACATTATCTACTAACCTAAT
66 AGTTAACCTAACAAGGAAGCCTTTCCAGATGTGAGAAAAACATTATCTACTAACCTAAT
6809608 AAGGAATAGACAACAACAACAGCAACAATAATAAAATTTAATTAATCTGATAATGTTCTATTTAA
1 AAGGAATAGACAACAACAACAGCAACAATAATAAAATTTAATTAATCTGATAATGTTCTATTTAA
6809673 AGTTAACCTAACAAGGAAGCCTTTCCAGATGTGAGAAAAACATTATCTACTAACCT
66 AGTTAACCTAACAAGGAAGCCTTTCCAGATGTGAGAAAAACATTATCTACTAACCT
6809729 CCAAAAGCCT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 119 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (124 bp):
AAGGAATAGACAACAACAACAGCAACAATAATAAAATTTAATTAATCTGATAATGTTCTATTTAA
AGTTAACCTAACAAGGAAGCCTTTCCAGATGTGAGAAAAACATTATCTACTAACCTAAT
Found at i:6812239 original size:36 final size:39
Alignment explanation
Indices: 6812199--6812291 Score: 138
Period size: 41 Copynumber: 2.4 Consensus size: 39
6812189 GAACAACACT
6812199 TGGTAGAA-TT-AAA-AATTCACACATAACAATCATCTA
1 TGGTAGAACTTGAAACAATTCACACATAACAATCATCTA
*
6812235 TGGTAGAACTTGAAACTCAGTTCACACATAACAATCATCTA
1 TGGTAGAACTTGAAA--CAATTCACACATAACAATCATCTA
6812276 TGGTAGAACTTGAAAC
1 TGGTAGAACTTGAAAC
6812292 TCAGTACTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
36 8 0.16
37 2 0.04
38 3 0.06
39 1 0.02
41 37 0.73
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (39 bp):
TGGTAGAACTTGAAACAATTCACACATAACAATCATCTA
Found at i:6812271 original size:41 final size:41
Alignment explanation
Indices: 6812214--6812296 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
6812204 GAATTAAAAA
6812214 TTCACACATAACAATCATCTATGGTAGAACTTGAAACTCAG
1 TTCACACATAACAATCATCTATGGTAGAACTTGAAACTCAG
6812255 TTCACACATAACAATCATCTATGGTAGAACTTGAAACTCAG
1 TTCACACATAACAATCATCTATGGTAGAACTTGAAACTCAG
6812296 T
1 T
6812297 ACTCAAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.28
Consensus pattern (41 bp):
TTCACACATAACAATCATCTATGGTAGAACTTGAAACTCAG
Found at i:6817949 original size:17 final size:18
Alignment explanation
Indices: 6817917--6817950 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6817907 AATTTTTTTA
*
6817917 TTTAAACTTATTAAATTT
1 TTTAAAATTATTAAATTT
6817935 TTTAAAATT-TTAAATT
1 TTTAAAATTATTAAATT
6817951 AGTAAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAAAATTATTAAATTT
Found at i:6825719 original size:20 final size:20
Alignment explanation
Indices: 6825687--6825731 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6825677 ATTTGGTCAC
6825687 AAAGGCAGAGACAAAAAAAA
1 AAAGGCAGAGACAAAAAAAA
* *
6825707 AAAGG-AGAGGACAAAGAAAT
1 AAAGGCAGA-GACAAAAAAAA
6825727 AAAGG
1 AAAGG
6825732 GAAACCCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.64, C:0.07, G:0.27, T:0.02
Consensus pattern (20 bp):
AAAGGCAGAGACAAAAAAAA
Found at i:6831553 original size:3 final size:3
Alignment explanation
Indices: 6831545--6831583 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
6831535 TTCGTTTTAG
*
6831545 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAAT TTT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA
6831584 ACCTCGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6835192 original size:25 final size:26
Alignment explanation
Indices: 6835158--6835219 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
6835148 CATATTTTTC
*
6835158 AAATAGATGAACTAATTTTTTTTAAT
1 AAATAAATGAACTAATTTTTTTTAAT
* **
6835184 -ATTAAATGAACTGTTTTTTTTTAAT
1 AAATAAATGAACTAATTTTTTTTAAT
6835209 AAATAAATGAA
1 AAATAAATGAA
6835220 AAACAAGAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 21 0.70
26 9 0.30
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (26 bp):
AAATAAATGAACTAATTTTTTTTAAT
Found at i:6841212 original size:32 final size:32
Alignment explanation
Indices: 6841175--6841238 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
6841165 ACCATAAAGT
* *
6841175 AAATATAGCTTTTTTATTTTATAATTTGATAA
1 AAATATAACTTTTTTATTTTATAATTTAATAA
6841207 AAATATAACTTTTTTATTTTATAATTTAATAA
1 AAATATAACTTTTTTATTTTATAATTTAATAA
6841239 TTTACTAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (32 bp):
AAATATAACTTTTTTATTTTATAATTTAATAA
Found at i:6841377 original size:17 final size:18
Alignment explanation
Indices: 6841355--6841390 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
6841345 TGATAGAGTG
*
6841355 TGTATAATAA-ACTAAAA
1 TGTATAAAAATACTAAAA
6841372 TGTATAAAAATACTAAAA
1 TGTATAAAAATACTAAAA
6841390 T
1 T
6841391 AAAGCTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.31
Consensus pattern (18 bp):
TGTATAAAAATACTAAAA
Found at i:6846954 original size:24 final size:25
Alignment explanation
Indices: 6846923--6846987 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
6846913 TCTCAAGCAC
*
6846923 TATAACGGGAAGCTCAT-TGAGCCA
1 TATAACGGGAAGCTCATCCGAGCCA
* * **
6846947 TGTAACGGGAAGCTTATCCGAGCTT
1 TATAACGGGAAGCTCATCCGAGCCA
6846972 TATAACGGGAAGCTCA
1 TATAACGGGAAGCTCA
6846988 CAAAGAGCCT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (25 bp):
TATAACGGGAAGCTCATCCGAGCCA
Found at i:6848280 original size:64 final size:64
Alignment explanation
Indices: 6848204--6848327 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 64
6848194 ATGAAGAGTC
* * ** * * * *
6848204 ATATATCAGGACGCTCATAAAGAGTTGCGGTATGTCCGCAATATATGCAGGATCAATACCAATT
1 ATATAACAGGACGCTCACAAAGAACTGCGGTATATCCACAACATATGCACGATCAATACCAATT
*
6848268 ATATAACAGGACGCTCACAAAGAACTGCGGTATATTCACAACATATGCACGATCAATACC
1 ATATAACAGGACGCTCACAAAGAACTGCGGTATATCCACAACATATGCACGATCAATACC
6848328 GATCGGGATG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (64 bp):
ATATAACAGGACGCTCACAAAGAACTGCGGTATATCCACAACATATGCACGATCAATACCAATT
Found at i:6852396 original size:15 final size:16
Alignment explanation
Indices: 6852371--6852404 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
6852361 TCCTTTCTCA
6852371 AAACGCTATAATGGAT
1 AAACGCTATAATGGAT
6852387 AAAC-CTATAATGGAT
1 AAACGCTATAATGGAT
6852402 AAA
1 AAA
6852405 TTTTCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.24
Consensus pattern (16 bp):
AAACGCTATAATGGAT
Found at i:6856683 original size:118 final size:116
Alignment explanation
Indices: 6856477--6856710 Score: 344
Period size: 118 Copynumber: 2.0 Consensus size: 116
6856467 AACATAGGCA
* * * *
6856477 TTAACATGAGATTTAAAAGAGTAAAATAATTTTTGGAAAGAGTGATTAAGTGTGATATATATAAT
1 TTAACATGAAATTTAAAAGAGCAAAATAATTTTTGGAAAGAGTGATTAAGTGTCATATATATAAA
* *
6856542 TTGTAATATCAAAACTGGAAGAATAATATATACTTAAACATGCTTGAATCT
66 TTGTAATATCAAAACTGGAAGAATAATACATACTTAAACATACTTGAATCT
* *
6856593 TTAACATGAAATTTAAAAAGAGCAAAATAATGTTTTTGAAAGAGTGATTAAGTGTCATGTATATA
1 TTAACATGAAATTT-AAAAGAGCAAAATAAT-TTTTGGAAAGAGTGATTAAGTGTCATATATATA
* *
6856658 AATTGTATTATCAAAA-TGGGAAGAATAATACATACTTAACCATACTTGAATCT
64 AATTGTAATATCAAAACT-GGAAGAATAATACATACTTAAACATACTTGAATCT
6856711 GTATGTTTTA
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
116 13 0.12
117 16 0.15
118 76 0.72
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (116 bp):
TTAACATGAAATTTAAAAGAGCAAAATAATTTTTGGAAAGAGTGATTAAGTGTCATATATATAAA
TTGTAATATCAAAACTGGAAGAATAATACATACTTAAACATACTTGAATCT
Found at i:6859359 original size:21 final size:21
Alignment explanation
Indices: 6859333--6859402 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
6859323 AATAAATACC
6859333 AAAAAATTATTTTAAAAATTA
1 AAAAAATTATTTTAAAAATTA
* *
6859354 AAAAAAGTATTTTAAAAATATTT
1 AAAAAATTATTTT-AAAA-ATTA
*
6859377 TAAAAA-TATTTT-AAAATTA
1 AAAAAATTATTTTAAAAATTA
6859396 AAAAAAT
1 AAAAAAT
6859403 AAATATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
19 8 0.20
20 3 0.07
21 12 0.29
22 10 0.24
23 8 0.20
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (21 bp):
AAAAAATTATTTTAAAAATTA
Found at i:6859375 original size:11 final size:11
Alignment explanation
Indices: 6859334--6859392 Score: 68
Period size: 11 Copynumber: 5.4 Consensus size: 11
6859324 ATAAATACCA
6859334 AAAAATTATTTT
1 AAAAA-TATTTT
**
6859346 -AAAA-ATTAA
1 AAAAATATTTT
6859355 AAAAAGTATTTT
1 AAAAA-TATTTT
6859367 AAAAATATTTT
1 AAAAATATTTT
6859378 AAAAATATTTT
1 AAAAATATTTT
6859389 AAAA
1 AAAA
6859393 TTAAAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 3 0.08
10 4 0.10
11 25 0.62
12 8 0.20
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:6877993 original size:9 final size:9
Alignment explanation
Indices: 6877981--6878010 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
6877971 AATCGAATCA
6877981 AGTTATTCG
1 AGTTATTCG
6877990 AGTTATTCG
1 AGTTATTCG
*
6877999 AATTATTCG
1 AGTTATTCG
6878008 AGT
1 AGT
6878011 CAACTTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (9 bp):
AGTTATTCG
Found at i:6878203 original size:19 final size:19
Alignment explanation
Indices: 6878152--6878212 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 19
6878142 TCTCTTAACG
* *
6878152 AAAAATCAAAATAATTTTC
1 AAAATTCAAAATAATTTTT
*
6878171 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
6878191 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
6878209 AAAA
1 AAAA
6878213 ATTTTAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
18 9 0.25
19 11 0.31
20 16 0.44
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:6878213 original size:19 final size:19
Alignment explanation
Indices: 6878152--6878215 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
6878142 TCTCTTAACG
6878152 AAAAA-TCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
* *
6878170 CAAAATTTGAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
*
6878190 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
6878209 AAAAATT
1 AAAAATT
6878216 TTAAAAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
18 4 0.11
19 21 0.57
20 12 0.32
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:6878274 original size:24 final size:22
Alignment explanation
Indices: 6878223--6878275 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
6878213 ATTTTAAAAA
*
6878223 TATAAATTTTAAAAAAATATAT
1 TATAAAATTTAAAAAAATATAT
* *
6878245 CA-AAAATTTAATAAAATAATAAT
1 TATAAAATTTAAAAAAAT-AT-AT
6878268 TATAAAAT
1 TATAAAAT
6878276 CAAAATAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 13 0.54
22 3 0.12
23 3 0.12
24 5 0.21
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TATAAAATTTAAAAAAATATAT
Found at i:6892570 original size:15 final size:14
Alignment explanation
Indices: 6892550--6892584 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
6892540 AGAGTGGGAA
6892550 AAAAAAAGAAAACTG
1 AAAAAAAG-AAACTG
*
6892565 AAAAAAAGGAACTG
1 AAAAAAAGAAACTG
6892579 AAAAAA
1 AAAAAA
6892585 TTGAAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (14 bp):
AAAAAAAGAAACTG
Found at i:6893350 original size:83 final size:84
Alignment explanation
Indices: 6893211--6893378 Score: 284
Period size: 83 Copynumber: 2.0 Consensus size: 84
6893201 ATGCTATATC
* *
6893211 TGTAATATCCCGAAAATTACTATAGTAAGAAAATAGGTATATTTGATATAGTAAAATAAGGAAAT
1 TGTAATATCCCGAAAATTACTATAGTAAGAAAATAGGCATACTTGATATAGTAAAATAAGGAAAT
**
6893276 AAA-TGTTAAAAAGCAAAA
66 AAAGTGACAAAAAGCAAAA
*
6893294 TGTAATATCCCGAAAATTACTATAGTAAGAAAGTAGGCATACTTGATATAGTAAAATAAGGAAAT
1 TGTAATATCCCGAAAATTACTATAGTAAGAAAATAGGCATACTTGATATAGTAAAATAAGGAAAT
6893359 AAAGTGACAAAAAGCAAAA
66 AAAGTGACAAAAAGCAAAA
6893378 T
1 T
6893379 TTTGATTTAT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 65 0.82
84 14 0.18
ACGTcount: A:0.51, C:0.08, G:0.15, T:0.26
Consensus pattern (84 bp):
TGTAATATCCCGAAAATTACTATAGTAAGAAAATAGGCATACTTGATATAGTAAAATAAGGAAAT
AAAGTGACAAAAAGCAAAA
Found at i:6901994 original size:36 final size:36
Alignment explanation
Indices: 6901922--6902070 Score: 226
Period size: 36 Copynumber: 4.1 Consensus size: 36
6901912 ACTCAGGATG
* * * * *
6901922 CTTATGAGAGGAAACTGGGATGTAAAACAGTATATCA
1 CTTATAAGAGGAAAATGAGAT-TTAAACAGTTTATCA
6901959 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
6901995 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
*
6902031 CTTACAAGAGGAAAATGAGATTTAGAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTTA-AACAGTTTATCA
6902068 CTT
1 CTT
6902071 CAGCAATTAT
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 72 0.69
37 33 0.31
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (36 bp):
CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
Found at i:6903727 original size:13 final size:14
Alignment explanation
Indices: 6903703--6903731 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
6903693 CATTTATTGT
6903703 TTAAATAAATATCA
1 TTAAATAAATATCA
6903717 TTAAA-AAATATCA
1 TTAAATAAATATCA
6903730 TT
1 TT
6903732 TAATGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAATAAATATCA
Found at i:6903734 original size:14 final size:15
Alignment explanation
Indices: 6903702--6903734 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
6903692 TCATTTATTG
6903702 TTTAAATAAATATCA
1 TTTAAATAAATATCA
6903717 -TTAAA-AAATATCA
1 TTTAAATAAATATCA
6903730 TTTAA
1 TTTAA
6903735 TGTTTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
TTTAAATAAATATCA
Found at i:6904804 original size:57 final size:54
Alignment explanation
Indices: 6904707--6904837 Score: 149
Period size: 57 Copynumber: 2.4 Consensus size: 54
6904697 CAAATTATCA
* * *
6904707 AAAGATTCATTGATTCGATCTAGAAAAAAACCATCCGTTTCGTCATACACATCGTTG
1 AAAGATTTATTGATTCCATCTAGAAAAAAACCATCCGTTTCG---TACACATCATTG
* * *
6904764 GAAGATTTATTGATTCCA-CTGAGAAAAAAGCCA-CTTGTTTCGTACACATCATTG
1 AAAGATTTATTGATTCCATCT-AGAAAAAAACCATC-CGTTTCGTACACATCATTG
6904818 AAAGATTTATTGATTCCATC
1 AAAGATTTATTGATTCCATC
6904838 GAGTAATATG
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
54 28 0.44
55 1 0.02
56 3 0.05
57 32 0.50
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (54 bp):
AAAGATTTATTGATTCCATCTAGAAAAAAACCATCCGTTTCGTACACATCATTG
Found at i:6925686 original size:9 final size:9
Alignment explanation
Indices: 6925628--6925686 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
6925618 TCAAAAAATT
6925628 AAATTTAAA
1 AAATTTAAA
*
6925637 AAA-ATAAA
1 AAATTTAAA
*
6925645 AAATTTTAA
1 AAATTTAAA
6925654 AAATCTTATATA
1 AAAT-TTA-A-A
*
6925666 AAATTTACA
1 AAATTTAAA
6925675 AAATTTAAA
1 AAATTTAAA
6925684 AAA
1 AAA
6925687 AAGCTTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
8 7 0.17
9 22 0.55
10 2 0.05
11 4 0.10
12 5 0.12
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATTTAAA
Found at i:6926030 original size:23 final size:25
Alignment explanation
Indices: 6926004--6926049 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
6925994 AAATGTTTAA
*
6926004 ATTTAGGATA-AATTTAA-ATTTTG
1 ATTTAAGATATAATTTAATATTTTG
*
6926027 ATTTAATATATAATTTAATATTT
1 ATTTAAGATATAATTTAATATTT
6926050 AAACTTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 7 0.37
25 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (25 bp):
ATTTAAGATATAATTTAATATTTTG
Found at i:6928199 original size:17 final size:18
Alignment explanation
Indices: 6928159--6928199 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
6928149 AATCAAAATT
*
6928159 TATAAATCAAATTGCATA
1 TATAAATAAAATTGCATA
*
6928177 TA-AAATAAAATTG-ATG
1 TATAAATAAAATTGCATA
6928193 TATAAAT
1 TATAAAT
6928200 TTGATATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 4 0.20
17 14 0.70
18 2 0.10
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (18 bp):
TATAAATAAAATTGCATA
Found at i:6938102 original size:37 final size:37
Alignment explanation
Indices: 6938041--6938270 Score: 320
Period size: 37 Copynumber: 6.0 Consensus size: 37
6938031 TACGTATGAT
*
6938041 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
6938076 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
6938113 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
6938150 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
6938187 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
6938230 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
6938270 C
1 C
6938271 GAAGCTATCA
Statistics
Matches: 178, Mismatches: 6, Indels: 20
0.87 0.03 0.10
Matches are distributed among these distances:
35 9 0.05
36 4 0.02
37 122 0.69
39 2 0.01
40 4 0.02
41 1 0.01
42 1 0.01
43 3 0.02
44 2 0.01
46 30 0.17
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:6938240 original size:46 final size:46
Alignment explanation
Indices: 6938187--6938455 Score: 349
Period size: 46 Copynumber: 5.6 Consensus size: 46
6938177 TAAGTGTAGC
* **
6938187 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6938233 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
6938279 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
6938331 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
** *
6938377 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
6938429 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
6938456 AGTACTCAAA
Statistics
Matches: 201, Mismatches: 10, Indels: 24
0.86 0.04 0.10
Matches are distributed among these distances:
46 113 0.56
48 1 0.00
49 2 0.01
50 1 0.00
52 84 0.42
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:6938306 original size:52 final size:52
Alignment explanation
Indices: 6938230--6938449 Score: 308
Period size: 52 Copynumber: 4.3 Consensus size: 52
6938220 TAGCTAAAGC
* *
6938230 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
6938283 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
6938335 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
6938381 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
6938433 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
6938450 ATCAGAAGTA
Statistics
Matches: 150, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
46 44 0.29
49 1 0.01
52 87 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:6938352 original size:98 final size:98
Alignment explanation
Indices: 6938187--6938455 Score: 466
Period size: 98 Copynumber: 2.7 Consensus size: 98
6938177 TAAGTGTAGC
* * *
6938187 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
6938252 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
6938286 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
6938351 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
6938384 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
6938449 GATCAGA
66 GATCAGA
6938456 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 152 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Done.