Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 175 of 208
Found at i:55633663 original size:29 final size:29
Alignment explanation
Indices: 55633609--55633664 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
55633599 ATATACTTAG
*
55633609 ATTAAATCTTAATTAATCAAATTTAATTA
1 ATTAAATCTTAATTAATCAAACTTAATTA
* *
55633638 ATTAAATCTTAATTAATTAACCTTAAT
1 ATTAAATCTTAATTAATCAAACTTAAT
55633665 CACAATTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.45
Consensus pattern (29 bp):
ATTAAATCTTAATTAATCAAACTTAATTA
Found at i:55636365 original size:50 final size:50
Alignment explanation
Indices: 55636295--55636579 Score: 321
Period size: 50 Copynumber: 5.7 Consensus size: 50
55636285 GGTAAAGAGG
* **
55636295 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
** *
55636345 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * *
55636395 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--GTACAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ATATGAGAAC
* *
55636443 ATCCCATGTGAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * *
55636494 TCCCATGTAAGACCATATCTAGGATATGGCATTGGCA--G-TATGGGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAG-AAC
* *
55636542 ATCCCATGTGAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
55636580 TGTTATTATC
Statistics
Matches: 196, Mismatches: 32, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
47 5 0.03
48 8 0.04
49 68 0.35
50 111 0.57
51 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:55636485 original size:99 final size:99
Alignment explanation
Indices: 55636354--55636572 Score: 402
Period size: 99 Copynumber: 2.2 Consensus size: 99
55636344 GTCCCCCGTA
* *
55636354 AGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATTTGGGA
1 AGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTAGGA
55636419 TATGGCATTGGCAGTACAGGAAACATCCCATGTG
66 TATGGCATTGGCAGTACAGGAAACATCCCATGTG
55636453 AGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTAGGA
1 AGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTAGGA
**
55636518 TATGGCATTGGCAGTATGGGAAACATCCCATGTG
66 TATGGCATTGGCAGTACAGGAAACATCCCATGTG
55636552 AGACCATGTCTGGGACATGGC
1 AGACCATGTCTGGGACATGGC
55636573 TTTGGCATGT
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 116 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (99 bp):
AGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTAGGA
TATGGCATTGGCAGTACAGGAAACATCCCATGTG
Found at i:55639935 original size:46 final size:46
Alignment explanation
Indices: 55639866--55639981 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 46
55639856 ATACCTAATT
* ** * * **
55639866 TGCGAACTCATATGTTAAAAGTATGCAAAACTATCTATGTTTGTTA
1 TGCGAACTCACATGTTAGCAGTATGCAAAACTATATATATCAGTTA
** *
55639912 TGCGAACTCACATGTTAGCAGTATGTGAACCTATATATATCAGTTA
1 TGCGAACTCACATGTTAGCAGTATGCAAAACTATATATATCAGTTA
*
55639958 TGCCAACTCACATGTTAGCAGTAT
1 TGCGAACTCACATGTTAGCAGTAT
55639982 ATGAACCCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (46 bp):
TGCGAACTCACATGTTAGCAGTATGCAAAACTATATATATCAGTTA
Found at i:55639936 original size:23 final size:23
Alignment explanation
Indices: 55639910--55639981 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
55639900 CTATGTTTGT
55639910 TATGCGAACTCACATGTTAGCAG
1 TATGCGAACTCACATGTTAGCAG
* * * *
55639933 TATGTGAAC-CTATAT-ATATCAG
1 TATGCGAACTC-ACATGTTAGCAG
*
55639955 TTATGCCAACTCACATGTTAGCAG
1 -TATGCGAACTCACATGTTAGCAG
55639979 TAT
1 TAT
55639982 ATGAACCCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
22 6 0.17
23 24 0.67
24 6 0.17
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (23 bp):
TATGCGAACTCACATGTTAGCAG
Found at i:55639987 original size:46 final size:46
Alignment explanation
Indices: 55639908--55640085 Score: 173
Period size: 46 Copynumber: 3.9 Consensus size: 46
55639898 ATCTATGTTT
*
55639908 GTTATGCGAACTCACATGTTAGCAGTATGTGAACCTATATATATCA
1 GTTATGCAAACTCACATGTTAGCAGTATGTGAACCTATATATATCA
* * * * *
55639954 GTTATGCCAACTCACATGTTAGCAGTATATGAACC--CATATGTCT
1 GTTATGCAAACTCACATGTTAGCAGTATGTGAACCTATATATATCA
* * * * *
55639998 GTTATGCAAACTCACACGTTGGCAATATGTGAACCCTATATACA-CC
1 GTTATGCAAACTCACATGTTAGCAGTATGTGAA-CCTATATATATCA
* ** * *
55640044 TTTATGCAAACTCACACATTAACAGTATGCGAACCCTATATA
1 GTTATGCAAACTCACATGTTAGCAGTATGTGAA-CCTATATA
55640086 CGCCTTTGTT
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
44 34 0.31
45 2 0.02
46 70 0.64
47 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (46 bp):
GTTATGCAAACTCACATGTTAGCAGTATGTGAACCTATATATATCA
Found at i:55639995 original size:23 final size:23
Alignment explanation
Indices: 55639923--55639995 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
55639913 GCGAACTCAC
* *
55639923 ATGTTAGCAGTATGTGAACCTAT
1 ATGTTAGCAGTATATGAACCCAT
* * * *
55639946 AT-ATATCAGT-TATGCCAACTCAC
1 ATGTTAGCAGTATATG--AACCCAT
55639969 ATGTTAGCAGTATATGAACCCAT
1 ATGTTAGCAGTATATGAACCCAT
55639992 ATGT
1 ATGT
55639996 CTGTTATGCA
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 3 0.08
22 6 0.17
23 17 0.47
24 6 0.17
25 4 0.11
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (23 bp):
ATGTTAGCAGTATATGAACCCAT
Found at i:55640078 original size:90 final size:91
Alignment explanation
Indices: 55639901--55640084 Score: 219
Period size: 90 Copynumber: 2.0 Consensus size: 91
55639891 CAAAACTATC
* * * * * *
55639901 TATGTTTGTTATGCGAACTCACATGTTAGCAGTATGTGAACCTATATATATCAGTTATGCCAACT
1 TATGTCTGTTATGCAAACTCACACGTTAGCAATATGTGAACCTATATACATCAGTTATGCAAACT
** * *
55639966 CACATGTTAGCAGTATATGAACCC-A
66 CACACATTAACAGTATACGAACCCTA
* **
55639991 TATGTCTGTTATGCAAACTCACACGTTGGCAATATGTGAACCCTATATACA-CCTTTATGCAAAC
1 TATGTCTGTTATGCAAACTCACACGTTAGCAATATGTGAA-CCTATATACATCAGTTATGCAAAC
*
55640055 TCACACATTAACAGTATGCGAACCCTA
65 TCACACATTAACAGTATACGAACCCTA
55640082 TAT
1 TAT
55640085 ACGCCTTTGT
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
90 65 0.83
91 13 0.17
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (91 bp):
TATGTCTGTTATGCAAACTCACACGTTAGCAATATGTGAACCTATATACATCAGTTATGCAAACT
CACACATTAACAGTATACGAACCCTA
Found at i:55640675 original size:47 final size:46
Alignment explanation
Indices: 55640585--55640675 Score: 119
Period size: 47 Copynumber: 2.0 Consensus size: 46
55640575 GACTCCAACA
* * *
55640585 GCCTTTATACAAACTCACACGTTAGCAGTATGCGATCCTTATATAC
1 GCCTTCATACAAACTCACACGTTAGCAGCATGCGATCCCTATATAC
* * *
55640631 GCCTTCATGCAAACTCATACGATTAGCAGCATGTGATCCCTATAT
1 GCCTTCATACAAACTCACACG-TTAGCAGCATGCGATCCCTATAT
55640676 TTATGCGAAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
46 18 0.47
47 20 0.53
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (46 bp):
GCCTTCATACAAACTCACACGTTAGCAGCATGCGATCCCTATATAC
Found at i:55643250 original size:32 final size:32
Alignment explanation
Indices: 55643214--55643287 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
55643204 GCATATATGT
*
55643214 ATTTTCAAAATATAAGTATGATACATAAATAA
1 ATTTTGAAAATATAAGTATGATACATAAATAA
55643246 ATTTTGAAAATATAAGTATGATACATAAATAA
1 ATTTTGAAAATATAAGTATGATACATAAATAA
55643278 ATTTTGAAAA
1 ATTTTGAAAA
55643288 CATGTATATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (32 bp):
ATTTTGAAAATATAAGTATGATACATAAATAA
Found at i:55643275 original size:19 final size:19
Alignment explanation
Indices: 55643221--55643276 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
55643211 TGTATTTTCA
55643221 AAATATAAGTATGATACAT
1 AAATATAAGTATGATACAT
**
55643240 AAATA-AA-T-T--TTGA-
1 AAATATAAGTATGATACAT
55643253 AAATATAAGTATGATACAT
1 AAATATAAGTATGATACAT
55643272 AAATA
1 AAATA
55643277 AATTTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 12
0.63 0.09 0.28
Matches are distributed among these distances:
13 5 0.19
14 4 0.15
15 1 0.04
16 2 0.07
17 1 0.04
18 4 0.15
19 10 0.37
ACGTcount: A:0.55, C:0.04, G:0.09, T:0.32
Consensus pattern (19 bp):
AAATATAAGTATGATACAT
Found at i:55643847 original size:3 final size:3
Alignment explanation
Indices: 55643818--55643878 Score: 79
Period size: 3 Copynumber: 20.3 Consensus size: 3
55643808 GTATGTAAGT
* * *
55643818 ATA ATT ATA ATA CTA TATA AT- ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
55643863 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
55643879 CAAAAACTAC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 46 0.92
4 2 0.04
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:55643908 original size:12 final size:11
Alignment explanation
Indices: 55643880--55643906 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
55643870 TAATAATAAC
55643880 AAAAACTACAA
1 AAAAACTACAA
55643891 AAAAACTACAA
1 AAAAACTACAA
55643902 AAAAA
1 AAAAA
55643907 ACCTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.15, G:0.00, T:0.07
Consensus pattern (11 bp):
AAAAACTACAA
Found at i:55647345 original size:119 final size:119
Alignment explanation
Indices: 55647161--55647391 Score: 408
Period size: 119 Copynumber: 1.9 Consensus size: 119
55647151 TTTATTGATT
* *
55647161 TCTGGTGAGGGTACTTCTAGTGAAATTATTGTACTGAGTCCGTTGGGGCAGTCTGTTCGAGTAAG
1 TCTGGTAAGGGTACTTCTAGTGAAATTATTATACTGAGTCCGTTGGGGCAGTCTGTTCGAGTAAG
*
55647226 TAGACTTTATAGGAATGTACGTTTGGAAGTACAAGGGATTGTGTTTTTGGCAGA
66 TAGACTTTATAGGAATGTACCTTTGGAAGTACAAGGGATTGTGTTTTTGGCAGA
* * *
55647280 TCTGGTAAGGGTAGTTCTAGTGAAATTATTATACTGAGTCCTTTGGGGCATTCTGTTCGAGTAAG
1 TCTGGTAAGGGTACTTCTAGTGAAATTATTATACTGAGTCCGTTGGGGCAGTCTGTTCGAGTAAG
55647345 TAGACTTTATAGGAATGTACCTTTGGAAGTACAAGGGATTGTGTTTT
66 TAGACTTTATAGGAATGTACCTTTGGAAGTACAAGGGATTGTGTTTT
55647392 CAGCGTTTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 106 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.36
Consensus pattern (119 bp):
TCTGGTAAGGGTACTTCTAGTGAAATTATTATACTGAGTCCGTTGGGGCAGTCTGTTCGAGTAAG
TAGACTTTATAGGAATGTACCTTTGGAAGTACAAGGGATTGTGTTTTTGGCAGA
Found at i:55650915 original size:21 final size:19
Alignment explanation
Indices: 55650889--55650931 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
55650879 CAATGCTTAA
55650889 AAATTTTATTAAAAAAGTTTT
1 AAATTTTA-TAAAAAA-TTTT
*
55650910 AAATTTTATATAAAATTTT
1 AAATTTTATAAAAAATTTT
55650929 AAA
1 AAA
55650932 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 6 0.29
21 8 0.38
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
AAATTTTATAAAAAATTTT
Found at i:55654794 original size:18 final size:18
Alignment explanation
Indices: 55654771--55654808 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
55654761 ACGAACATCG
55654771 AAGAAATAGAAAAGAAAA
1 AAGAAATAGAAAAGAAAA
*
55654789 AAGAAATCGAAAAGAAAA
1 AAGAAATAGAAAAGAAAA
55654807 AA
1 AA
55654809 AATTAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (18 bp):
AAGAAATAGAAAAGAAAA
Found at i:55667986 original size:15 final size:16
Alignment explanation
Indices: 55667966--55667995 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55667956 CGGGCCCAAT
55667966 GCCAAA-CAAATAAAA
1 GCCAAACCAAATAAAA
55667981 GCCAAACCAAATAAA
1 GCCAAACCAAATAAA
55667996 TAAAATAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.63, C:0.23, G:0.07, T:0.07
Consensus pattern (16 bp):
GCCAAACCAAATAAAA
Found at i:55671570 original size:14 final size:14
Alignment explanation
Indices: 55671553--55671585 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
55671543 ATAAAAAATT
55671553 ATATAATAATAACA-
1 ATATAATAA-AACAC
55671567 ATATAATAAAACAC
1 ATATAATAAAACAC
55671581 ATATA
1 ATATA
55671586 TCTAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (14 bp):
ATATAATAAAACAC
Found at i:55678379 original size:10 final size:10
Alignment explanation
Indices: 55678362--55678432 Score: 56
Period size: 10 Copynumber: 7.3 Consensus size: 10
55678352 TTTTATCGTC
55678362 TTTT-ATAAT
1 TTTTAATAAT
*
55678371 TTCTAATAAT
1 TTTTAATAAT
*
55678381 TTTTTATAAT
1 TTTTAATAAT
* *
55678391 TTTTTACAAT
1 TTTTAATAAT
* *
55678401 ATTT-ACAAT
1 TTTTAATAAT
* *
55678410 TTCTAACAAT
1 TTTTAATAAT
55678420 TTTTAATAAT
1 TTTTAATAAT
55678430 TTT
1 TTT
55678433 ATTATTTATT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
9 10 0.20
10 41 0.80
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:55678387 original size:20 final size:20
Alignment explanation
Indices: 55678362--55678431 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
55678352 TTTTATCGTC
*
55678362 TTTTATAATTTCTAATAATT
1 TTTTATAATTTCTAACAATT
* *
55678382 TTTTATAATTTTTTACAA-T
1 TTTTATAATTTCTAACAATT
* *
55678401 ATTTACAATTTCTAACAATT
1 TTTTATAATTTCTAACAATT
*
55678421 TTTAATAATTT
1 TTTTATAATTT
55678432 TATTATTTAT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 15 0.38
20 24 0.62
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATAATTTCTAACAATT
Found at i:55685372 original size:29 final size:30
Alignment explanation
Indices: 55685308--55685373 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
55685298 CATGAAAAAC
*
55685308 CCTTATTTGAGCACTTTTGTAAAGGTTAAT
1 CCTTATTTGACCACTTTTGTAAAGGTTAAT
*
55685338 CTCTTATTTGACCA-TTTTG-AAAGGTTTGAT
1 C-CTTATTTGACCACTTTTGTAAAGG-TTAAT
55685368 CCTTAT
1 CCTTAT
55685374 ATAAGTAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 10 0.31
30 11 0.34
31 11 0.34
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.45
Consensus pattern (30 bp):
CCTTATTTGACCACTTTTGTAAAGGTTAAT
Found at i:55687019 original size:22 final size:22
Alignment explanation
Indices: 55686972--55687012 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
55686962 GTATCATCTC
*
55686972 GATTTGTTTTTATAGTGGTGGA
1 GATTTGTTTTTATAGTAGTGGA
55686994 GATTTGTTTTT-T-GTAGTGG
1 GATTTGTTTTTATAGTAGTGG
55687013 CATGATTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.54
Consensus pattern (22 bp):
GATTTGTTTTTATAGTAGTGGA
Found at i:55687138 original size:19 final size:18
Alignment explanation
Indices: 55687099--55687138 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
55687089 CAACTTTATT
55687099 TCATTTTCATTTTCTTTG
1 TCATTTTCATTTTCTTTG
55687117 TCATTTTCTATGTTTC-TTG
1 TCATTTTC-AT-TTTCTTTG
55687136 TCA
1 TCA
55687139 CATACAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 8 0.40
20 4 0.20
ACGTcount: A:0.12, C:0.17, G:0.07, T:0.62
Consensus pattern (18 bp):
TCATTTTCATTTTCTTTG
Found at i:55688008 original size:14 final size:15
Alignment explanation
Indices: 55687977--55688010 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
55687967 AAAAAATGGC
55687977 AAAATGTTGTTTTAA
1 AAAATGTTGTTTTAA
*
55687992 AAAATTTTGTTTTAA
1 AAAATGTTGTTTTAA
55688007 AAAA
1 AAAA
55688011 AATTGTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (15 bp):
AAAATGTTGTTTTAA
Found at i:55688023 original size:19 final size:17
Alignment explanation
Indices: 55687977--55688024 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 17
55687967 AAAAAATGGC
*
55687977 AAAATGTTGTTTT--AA
1 AAAATTTTGTTTTAAAA
55687992 AAAATTTTGTTTTAAAA
1 AAAATTTTGTTTTAAAA
55688009 AAAATTGTTGCTTTTA
1 AAAATT-TTG-TTTTA
55688025 TAAAGGGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 12 0.43
17 8 0.29
18 3 0.11
19 5 0.18
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (17 bp):
AAAATTTTGTTTTAAAA
Found at i:55692711 original size:46 final size:45
Alignment explanation
Indices: 55692644--55692877 Score: 256
Period size: 36 Copynumber: 5.6 Consensus size: 45
55692634 TTTGAGTACT
*
55692644 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
55692690 TCTGATCAAGTGAAAAAGTGAT-A-----AG--T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
55692726 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
*
55692772 TCTGATCAAGTGAAAAAGTGATAA---GT-GC-TA--T--ACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
55692808 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
* *
55692853 TCTGATC-AGGGCCAAA-TGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
55692878 ATCATACGTA
Statistics
Matches: 160, Mismatches: 9, Indels: 41
0.76 0.04 0.20
Matches are distributed among these distances:
36 58 0.36
37 2 0.01
38 1 0.01
39 2 0.01
40 6 0.04
41 2 0.01
42 4 0.03
43 12 0.08
44 7 0.04
45 14 0.09
46 52 0.32
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:55692781 original size:82 final size:82
Alignment explanation
Indices: 55692644--55692860 Score: 409
Period size: 82 Copynumber: 2.7 Consensus size: 82
55692634 TTTGAGTACT
55692644 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
55692709 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
55692726 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
55692791 GATAAGTGCTATACTTA
66 GATAAGTGCTACACTTA
*
55692808 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCA
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
55692861 GGGCCAAATG
Statistics
Matches: 133, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 21 0.16
82 112 0.84
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:55701193 original size:43 final size:43
Alignment explanation
Indices: 55701157--55701263 Score: 160
Period size: 43 Copynumber: 2.5 Consensus size: 43
55701147 GTTTGTAATA
* * * *
55701157 AAAGAGCCGCTAAAGGTCATGTTCTTTAGCGATGTTTGTGGGT
1 AAAGCGCCGCTAAAGATCATGTTCTGTAGCGATGTTTGTGGAT
*
55701200 AAAGCGCCGCTAAAGATCATGTTCTGTAGCGGTGTTTGTGGAT
1 AAAGCGCCGCTAAAGATCATGTTCTGTAGCGATGTTTGTGGAT
*
55701243 AAAGCGCCGCTAAAGAACATG
1 AAAGCGCCGCTAAAGATCATG
55701264 ACCTTTAGCA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGTTCTGTAGCGATGTTTGTGGAT
Found at i:55701818 original size:19 final size:20
Alignment explanation
Indices: 55701786--55701824 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
55701776 TTTATCGTAA
55701786 ATTTTATAAAAATA-TATAT
1 ATTTTATAAAAATACTATAT
* *
55701805 ATTTTATTATAATACTATAT
1 ATTTTATAAAAATACTATAT
55701825 GTGTTACGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTTATAAAAATACTATAT
Found at i:55702370 original size:43 final size:43
Alignment explanation
Indices: 55702303--55702437 Score: 173
Period size: 43 Copynumber: 3.1 Consensus size: 43
55702293 CATTTTATCA
* *
55702303 ATCATGTTCTTTAGCGGCATTTGTGGGTAAAGCGCCGCTAAAG
1 ATCATGTTCTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAG
* * * * * *
55702346 GTCATATTCTTTAGCAGCGTTTGT-GATAAAAGTGCCACTAAAT
1 ATCATGTTCTTTAGCGGCGTTTGTGGAT-AAAGCGCCGCTAAAG
55702389 ATCATGTTCTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAG
1 ATCATGTTCTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAG
*
55702432 AACATG
1 ATCATG
55702438 ACGTTTAGCA
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 2 0.03
43 70 0.93
44 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
ATCATGTTCTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAG
Found at i:55712111 original size:10 final size:10
Alignment explanation
Indices: 55712080--55712155 Score: 55
Period size: 10 Copynumber: 7.6 Consensus size: 10
55712070 TTTTATCGTC
55712080 TTTTATAATT
1 TTTTATAATT
**
55712090 TCATATAATT
1 TTTTATAATT
55712100 TTTTATAATT
1 TTTTATAATT
*
55712110 TTTTACAA-T
1 TTTTATAATT
* *
55712119 ATTTACAATT
1 TTTTATAATT
* * *
55712129 TCTAACAATT
1 TTTTATAATT
*
55712139 TTTAATAATT
1 TTTTATAATT
55712149 TTATTAT
1 TT-TTAT
55712156 TTATTATAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
9 8 0.15
10 41 0.79
11 3 0.06
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTATAATT
Found at i:55716866 original size:12 final size:12
Alignment explanation
Indices: 55716849--55716887 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
55716839 TGTTTTGAAG
55716849 AAATTTCAAAAT
1 AAATTTCAAAAT
55716861 AAATTTCAAAAT
1 AAATTTCAAAAT
55716873 AAATTTCAAAAT
1 AAATTTCAAAAT
55716885 AAA
1 AAA
55716888 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATTTCAAAAT
Found at i:55726212 original size:21 final size:21
Alignment explanation
Indices: 55726186--55726226 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
55726176 TAATTAAAGC
55726186 ATAAATTATATT-TATAATAAT
1 ATAAA-TATATTCTATAATAAT
*
55726207 ATAAATATATTCTATCATAA
1 ATAAATATATTCTATAATAA
55726227 ATATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAAATATATTCTATAATAAT
Found at i:55727368 original size:68 final size:68
Alignment explanation
Indices: 55727278--55727413 Score: 236
Period size: 68 Copynumber: 2.0 Consensus size: 68
55727268 TTTCAATCAC
*
55727278 AATCTATTGCATTCAAGAGCACCACATCTTTTTGGATGAAACAAACCTCTCAATTTTAAGATAAA
1 AATCAATTGCATTCAAGAGCACCACATCTTTTTGGATGAAACAAACCTCTCAATTTTAAGATAAA
55727343 CGG
66 CGG
* * *
55727346 AATCAATTGCATTCAAGAGCACCACGTCTTTTTGGATGAAACAAAGCTCTCAATTTTAGGATAAA
1 AATCAATTGCATTCAAGAGCACCACATCTTTTTGGATGAAACAAACCTCTCAATTTTAAGATAAA
55727411 CGG
66 CGG
55727414 GTCTTTAGGG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (68 bp):
AATCAATTGCATTCAAGAGCACCACATCTTTTTGGATGAAACAAACCTCTCAATTTTAAGATAAA
CGG
Found at i:55729706 original size:19 final size:18
Alignment explanation
Indices: 55729667--55729706 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
55729657 CAACTTTATT
55729667 TCATTTTCATTTTCTTTG
1 TCATTTTCATTTTCTTTG
55729685 TCATTTTCTATGTTTC-TTG
1 TCATTTTC-AT-TTTCTTTG
55729704 TCA
1 TCA
55729707 AATACAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 8 0.40
20 4 0.20
ACGTcount: A:0.12, C:0.17, G:0.07, T:0.62
Consensus pattern (18 bp):
TCATTTTCATTTTCTTTG
Found at i:55737628 original size:44 final size:44
Alignment explanation
Indices: 55737536--55738333 Score: 249
Period size: 44 Copynumber: 17.7 Consensus size: 44
55737526 TTATGGCGAG
* * ** * *
55737536 TCTTATCTCCCTGAAGTTGCAATGGAGCATATAAAAGCTAGTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* *
55737580 TCTTATCTCCCTGAAGTTGCAGTAGAGCGGATTGAAGTTA-CAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * * * *
55737623 GTCTTATCCCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGTGAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAG-CAA
* * * * *
55737669 TCTTATTTCCCTGAAGCTGCAGTGGAACAAATTGAAGCTATAAATTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--GCA-A
* * * * * * * *
55737720 TTTTATCTCTCTAAAGTTGCAATAGAGAAGA-T-CA--TATCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * * ** *
55737760 ACTTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAAATACCAA
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * * *
55737805 TCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGC-AA
* * * * *
55737850 TCTTATTTCTCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--GCA-A
* * ** * *
55737901 TCTTATCTCTCAGAAGTTGCAGTAAAGCAGA-T-CA--TAGAAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAG-CAA
* * * * *
55737942 CCTTATCTCCCTGAACTTGCAGTGGAGTAGGTTGAAGTTA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * *
55737985 GTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGC-AA
* * * * * * *
55738031 TCTTATTTCCTTGAAGTTGCACTAGAACGGATTGAAGATATAAATTACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-T--A--GCA-A
* * * * *
55738082 TCTTATCTCTCTAAAGTTGTAGTAGAGCAGA-T-CA--TAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGC-AA
* *
55738123 CCTTATCTCCCTGAAGTTGTAGTGGAGC------AAGTT-G-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * **
55738159 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCAAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGC-AA
* * * * * *
55738205 TCTTATTTCCCTGGCA-TTGCATTGGAACAGATTAAAGCTACAAATTATGGCGGA
1 TCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATT---G----AAGTTA--GC-AA
* ** *
55738259 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
* * *
55738302 GCATTATCTCCCTAAAGTTGCAGCGGAGCAGA
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGA
55738334 CTAAAGACAA
Statistics
Matches: 541, Mismatches: 150, Indels: 126
0.66 0.18 0.15
Matches are distributed among these distances:
36 2 0.00
37 26 0.05
38 1 0.00
39 1 0.00
40 1 0.00
41 73 0.13
42 4 0.01
43 14 0.03
44 159 0.29
45 125 0.23
46 8 0.01
47 6 0.01
48 1 0.00
49 6 0.01
50 6 0.01
51 75 0.14
52 3 0.01
53 2 0.00
54 28 0.05
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTAGCAA
Found at i:55737789 original size:92 final size:91
Alignment explanation
Indices: 55737671--55738148 Score: 349
Period size: 92 Copynumber: 5.3 Consensus size: 91
55737661 ATAGTGAATC
* * * *
55737671 TTATTTCCCTGAAGCTGCAGTGGAACAAATTGAAGCTATAAATTACAGATTTTATCTCTCTAAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TATAAATTACAGATCTTATCTCTCTAAAG
* *
55737736 TTGCAATAGAGAAGATCATATCAAACT
65 TTGCAGTAGAGAAGATCATAGCAAACT
* * * *
55737763 TTATCTCCCTGAAGTTGTAGTGGAACAGGTT---G-A-AAA-TACCA-ATCTTATCTCCCTGAAG
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTATAAATTA-CAGATCTTATCTCTCTAAAG
* * ** *
55737821 TTACAGTGGAGTAGACTGAAGATAGCGAA-T
65 TTGCAGT--AG-AGA-AGATCATAGCAAACT
* * *
55737851 CTTATTTCTCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTACAGATCTTATCTCTC-AGA
1 -TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TATAAATTACAGATCTTATCTCTCTA-A
* * * *
55737915 AGTTGCAGTAAAGCAGATCATAGAAAACC
63 AGTTGCAGTAGAGAAGATCATAGCAAACT
* ** * *
55737944 TTATCTCCCTGAACTTGCAGTGGAGTAGGTTGAAGT-T--A-TA-AG-TCTTATCTCCCTAAAGT
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTATAAATTACAGATCTTATCTCTCTAAAGT
* ** *
55738003 TGCAGTGGAGCAGACTGAAGATAGCGAA-T
66 TGCAGT--AG-AGA-AGATCATAGCAAACT
* * * * *
55738032 CTTATTTCCTTGAAGTTGCACTAGAACGGATTGAAGATATAAATTACAGATCTTATCTCTCTAAA
1 -TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TATAAATTACAGATCTTATCTCTCTAAA
* * *
55738097 GTTGTAGTAGAGCAGATCATAGCAAACC
64 GTTGCAGTAGAGAAGATCATAGCAAACT
*
55738125 TTATCTCCCTGAAGTTGTAGTGGA
1 TTATCTCCCTGAAGTTGCAGTGGA
55738149 GCAAGTTGAA
Statistics
Matches: 287, Mismatches: 69, Indels: 60
0.69 0.17 0.14
Matches are distributed among these distances:
85 41 0.14
86 8 0.03
87 6 0.02
88 7 0.02
89 69 0.24
90 2 0.01
91 2 0.01
92 91 0.32
93 5 0.02
94 6 0.02
95 7 0.02
96 43 0.15
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (91 bp):
TTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTATAAATTACAGATCTTATCTCTCTAAAGT
TGCAGTAGAGAAGATCATAGCAAACT
Found at i:55737811 original size:181 final size:181
Alignment explanation
Indices: 55737581--55738290 Score: 868
Period size: 181 Copynumber: 3.9 Consensus size: 181
55737571 AGCTAGTAAT
* *
55737581 CTTATCTCCCTGAAGTTGCAGTAGAGC-GGATTGAAGTTACAAGTCTTATCCCCCTAAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAAGTTACAAGTCTTATCTCCCTAAAGTTACA
* * **
55737645 GTGGAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGCTGCAGTGGAACAAATTGAAGCTAT
65 GTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTAT
* * * *
55737710 AAATTACAGATTTTATCTCTCTAAAGTTGCAATAGAGAAGATCATATCAAAC
130 AAATTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGCAAAC
* * * ** *
55737762 TTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAAATACCAA-TCTTATCTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCTCCCTAAAGTTACA
* *
55737826 GTGGAGTAGACTGAAGATAGCGAATCTTATTTCTCTGAAGTTGCAGTGGAACGGATTGAAGCTAT
65 GTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTAT
* *
55737891 AAATTACAGATCTTATCTCTC-AGAAGTTGCAGTAAAGCAGATCATAGAAAAC
130 AAATTACAGATCTTATCTCTCTA-AAGTTGCAGTAGAGCAGATCATAGCAAAC
* * * *
55737943 CTTATCTCCCTGAACTTGCAGTGGAGTAGGTTGAAGTTATAAGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTACAG
* * * *
55738008 TGGAGCAGACTGAAGATAGCGAATCTTATTTCCTTGAAGTTGCACTAGAACGGATTGAAGATATA
66 TGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATA
*
55738073 AATTACAGATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATCATAGCAAAC
131 AATTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGCAAAC
* * * *
55738124 CTTATCTCCCTGAAGTTGTAGTGGAGC------AAGTT-GAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTACAG
* * * * * * * *
55738182 CGGAGCAGACTGAAGACAGCAAATCTTATTTCCCTGGCA-TTGCATTGGAACAGATTAAAGCTAC
66 TGGAGCAGACTGAAGATAGCGAATCTTATTTCCCT-GAAGTTGCAGTGGAACGGATTGAAGCTAT
* * *
55738246 AAATTATGGCGGATCTTATCT-TCCTGAAGTTGCAGTGGAGCAGAT
130 AAATTA---CAGATCTTATCTCT-CTAAAGTTGCAGTAGAGCAGAT
55738291 TGAAGCCACC
Statistics
Matches: 460, Mismatches: 59, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
174 80 0.17
175 7 0.02
176 1 0.00
177 30 0.07
180 3 0.01
181 333 0.72
182 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (181 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTACAG
TGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACGGATTGAAGCTATA
AATTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGCAAAC
Found at i:55737886 original size:45 final size:44
Alignment explanation
Indices: 55737763--55738070 Score: 157
Period size: 45 Copynumber: 6.9 Consensus size: 44
55737753 ATATCAAACT
* *
55737763 TTATCTCCCTGAAGTTGTAGTGGAACAGG-TTGAAAATACCAATC
1 TTATCTCCCTGAAGTTGCAGTGGAAC-GGATTGAAGATACCAATC
* *** * *
55737807 TTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGATA-CCAATC
* * *
55737852 TTATTTCTCTGAAGTTGCAGTGGAACGGATTGAAGCTATAAATTACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAG--AT--A--CCA-ATC
* * * * * *
55737903 TTATCTCTCAGAAGTTGCAGT-AAAGCAGA-TCATAGA-A--AACC
1 TTATCTCCCTGAAGTTGCAGTGGAA-CGGATTGA-AGATACCAATC
* * *
55737944 TTATCTCCCTGAACTTGCAGTGGAGTA-GG-TTGAAGTTA-TAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGA--ACGGATTGAAGATACCAA-TC
* * * * *
55737988 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGATA-CCAATC
* * * *
55738033 TTATTTCCTTGAAGTTGCACTAGAACGGATTGAAGATA
1 TTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGATA
55738071 TAAATTACAG
Statistics
Matches: 196, Mismatches: 47, Indels: 41
0.69 0.17 0.14
Matches are distributed among these distances:
41 22 0.11
42 6 0.03
43 4 0.02
44 60 0.31
45 65 0.33
46 3 0.02
47 2 0.01
49 2 0.01
50 5 0.03
51 27 0.14
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAACGGATTGAAGATACCAATC
Found at i:55738196 original size:37 final size:37
Alignment explanation
Indices: 55738124--55738196 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
55738114 CATAGCAAAC
* * *
55738124 CTTATCTCCCTGAAGTTGTAGTGGAGCAAGTTGAAGT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAAGCTGAAGT
55738161 CTTATCTCCCTGAAGTTGCAGCGGAGC-AGACTGAAG
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAAG-CTGAAG
55738197 ACAGCAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (37 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAAGCTGAAGT
Found at i:55738375 original size:143 final size:143
Alignment explanation
Indices: 55738161--55739030 Score: 1220
Period size: 143 Copynumber: 6.1 Consensus size: 143
55738151 AAGTTGAAGT
* * *
55738161 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCAAATCTTATTTCCCTGGCATTGCA
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
*
55738226 TTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
55738291 TGAAGCCACCAGC
131 TGAAGCCACCAGC
* * ** * * * * **
55738304 ATTATCTCCCTAAAGTTGCAGCGGAGCAGACTAAAGACAATGAATATTACTTCCATGCCGTTATA
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* * * * * *
55738369 GTGGAACAGATTAAAGTTACAAATTATGACGGATCTTATCTTCCTAAATTTACAATGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
55738434 TGAAGCCACCAGC
131 TGAAGCCACCAGC
* *** * * *
55738447 CTTATCTCCCTGAAGTTGCAATAGAGCAGACTGAAGACAGCGAATCATATTTCCTTGGCATTGCA
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* *
55738512 GTGGAACAGATTAAAGTTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
55738577 TGAAGCCACCAGC
131 TGAAGCCACCAGC
*
55738590 CTTATCTCCCTAAAGTTGTAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
* ** ** * * * *
55738655 GTGAAACAGATTAAATATACAAATTATGGTAGATCTTATCTTCCTAAAGTTGTAATAGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
55738720 TGAAGCCACCAGC
131 TGAAGCCACCAGC
* * ** * *
55738733 CTTATCTCCCTGAAGTTGTAGTAGAGCAGACTGAAGACAGCGAATTTTATTTCCCTGGTC-TTGT
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGG-CGTTGC
* * *
55738797 AGTGGAATAGATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCTGA
65 AGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
55738862 TTGAAGCCACCAGC
130 TTGAAGCCACCAGC
* * * * *
55738876 CTTATCTCCCTAAATTTGCAGCGGAGCATACTGAAGACAACAAATCTTATTTCCCTGTTCGTTGC
1 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTG-GCGTTGC
* *
55738941 AGTGGATCAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGA
65 AGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
55739006 TTGAAGCCACCAGC
130 TTGAAGCCACCAGC
55739020 CTTATCTCCCT
1 CTTATCTCCCT
55739031 GTAAGGCCAA
Statistics
Matches: 633, Mismatches: 91, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
143 544 0.86
144 89 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (143 bp):
CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCA
GTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAGC
Found at i:55754367 original size:38 final size:40
Alignment explanation
Indices: 55754305--55754388 Score: 127
Period size: 38 Copynumber: 2.1 Consensus size: 40
55754295 ATTTTATAGC
* * *
55754305 AGATTTGTGGATTCTGATTTAGATGGATATGTTCAATTT-
1 AGATTTGTGGATTCCGATTCAGATGGATATATTCAATTTA
55754344 AGATTTGT-GATTCCGATTCAGATGGATATATTCAATTTA
1 AGATTTGTGGATTCCGATTCAGATGGATATATTCAATTTA
55754383 AGATTT
1 AGATTT
55754389 TATAACAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 27 0.66
39 14 0.34
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (40 bp):
AGATTTGTGGATTCCGATTCAGATGGATATATTCAATTTA
Found at i:55756502 original size:34 final size:35
Alignment explanation
Indices: 55756451--55756519 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
55756441 AAAGTAGTTT
*
55756451 TTAGGAAAGCAGTAAT-AAAAAAAAGTAAAAACTA
1 TTAGAAAAGCAGTAATAAAAAAAAAGTAAAAACTA
*
55756485 TTAGAAAAGTAGTAATAAAAAAAAAGTAAAAACTA
1 TTAGAAAAGCAGTAATAAAAAAAAAGTAAAAACTA
55756520 ATGCAAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 14 0.44
35 18 0.56
ACGTcount: A:0.64, C:0.04, G:0.13, T:0.19
Consensus pattern (35 bp):
TTAGAAAAGCAGTAATAAAAAAAAAGTAAAAACTA
Found at i:55756528 original size:35 final size:34
Alignment explanation
Indices: 55756456--55756529 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 34
55756446 AGTTTTTAGG
* *
55756456 AAAGCAGTAATAAAAAAAAGTAAAAACTATTAGA
1 AAAGTAGTAATAAAAAAAAGTAAAAACTAATAGA
55756490 AAAGTAGTAATAAAAAAAAAGTAAAAACTAAT-GCA
1 AAAGTAGTAAT-AAAAAAAAGTAAAAACTAATAG-A
55756525 AAAGT
1 AAAGT
55756530 TACCAATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 11 0.31
35 25 0.69
ACGTcount: A:0.65, C:0.05, G:0.12, T:0.18
Consensus pattern (34 bp):
AAAGTAGTAATAAAAAAAAGTAAAAACTAATAGA
Found at i:55757849 original size:40 final size:41
Alignment explanation
Indices: 55757805--55757892 Score: 108
Period size: 41 Copynumber: 2.2 Consensus size: 41
55757795 CTAGAGGGAG
*
55757805 CGATTTCCTTCCACGT-CAGT-AAATCGCGCTGACGTGGACA
1 CGATTTCC-TCCACGTACACTGAAATCGCGCTGACGTGGACA
* * * *
55757845 CGATTTCCTGCACGTACCCTGACATCGCGCTGACGTGGACG
1 CGATTTCCTCCACGTACACTGAAATCGCGCTGACGTGGACA
55757886 CGATTTC
1 CGATTTC
55757893 GCGGAAAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 6 0.15
40 10 0.24
41 25 0.61
ACGTcount: A:0.19, C:0.32, G:0.24, T:0.25
Consensus pattern (41 bp):
CGATTTCCTCCACGTACACTGAAATCGCGCTGACGTGGACA
Found at i:55757955 original size:29 final size:30
Alignment explanation
Indices: 55757904--55757962 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
55757894 CGGAAAATGA
55757904 CCCATTCCGGTAAATAATT-AAAAAACCGG
1 CCCATTCCGGTAAATAATTAAAAAAACCGG
* *
55757933 CCCATTTCGGTAAAT-TTTGAAAAAAACCGG
1 CCCATTCCGGTAAATAATT-AAAAAAACCGG
55757963 TCTTTTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 2 0.08
29 14 0.54
30 10 0.38
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (30 bp):
CCCATTCCGGTAAATAATTAAAAAAACCGG
Found at i:55760024 original size:30 final size:30
Alignment explanation
Indices: 55759984--55760085 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
55759974 TTTTAAAAAA
* *
55759984 AAATTGCATTTTGACCCTTAAACTTTTC-CT
1 AAATTTCATTTTGACCCTTAAAC-TTTCATT
*
55760014 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
* * * *
55760044 AAATTTCACTTAGACCCCTAAACCTTCATT
1 AAATTTCATTTTGACCCTTAAACTTTCATT
55760074 AAATTTCATTTT
1 AAATTTCATTTT
55760086 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCTTAAACTTTCATT
Found at i:55761329 original size:17 final size:17
Alignment explanation
Indices: 55761309--55761348 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
55761299 CGTTTTTAAA
55761309 AAAAATT-TCATGTCTTC
1 AAAAATTCTCATGT-TTC
*
55761326 AAAATTTCTCATGTTTC
1 AAAAATTCTCATGTTTC
55761343 AAAAAT
1 AAAAAT
55761349 AATAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (17 bp):
AAAAATTCTCATGTTTC
Found at i:55761425 original size:16 final size:16
Alignment explanation
Indices: 55761404--55761452 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 16
55761394 TTCTTTCTAA
55761404 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
55761420 AAAAATTTCCGTG-TTTC
1 AAAAA-TT-CGTGTTTTC
55761437 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
55761453 GTGTTTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.13
16 11 0.37
17 11 0.37
18 4 0.13
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (16 bp):
AAAAATTCGTGTTTTC
Found at i:55761496 original size:20 final size:20
Alignment explanation
Indices: 55761451--55761499 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
55761441 ATTCGTGTTT
*
55761451 TCGTGTTTTCAAAAAAAATTC
1 TCGTG-TTTCAAAAAAAAATC
* *
55761472 CCGTGTTTCAAAAAAAAATG
1 TCGTGTTTCAAAAAAAAATC
55761492 TCGTGTTT
1 TCGTGTTT
55761500 TAAGAAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
TCGTGTTTCAAAAAAAAATC
Found at i:55761507 original size:20 final size:18
Alignment explanation
Indices: 55761450--55761542 Score: 60
Period size: 19 Copynumber: 4.8 Consensus size: 18
55761440 AATTCGTGTT
55761450 TTCGTGTTTTCAAAAAAAA
1 TTCGTGTTTT-AAAAAAAA
*
55761469 TTCCCGTGTTTCAAAAAAAAA
1 TT--CGTGTTT-TAAAAAAAA
* *
55761490 TGTCGTGTTTTAAGAAAAT
1 T-TCGTGTTTTAAAAAAAA
* * **
55761509 TTCGTTTTTTCTAAAAATT
1 TTCGTGTTTT-AAAAAAAA
55761528 TTCGTGTTTCTAAAA
1 TTCGTGTTT-TAAAA
55761543 TTTTCGTGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 8 0.14
19 25 0.43
20 8 0.14
21 16 0.28
22 1 0.02
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (18 bp):
TTCGTGTTTTAAAAAAAA
Found at i:55761507 original size:21 final size:19
Alignment explanation
Indices: 55761450--55761507 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
55761440 AATTCGTGTT
*
55761450 TTCGTGTTTTCAAAAAAAA
1 TTCGTGTTTTAAAAAAAAA
*
55761469 TTCCCGTGTTTCAAAAAAAAA
1 TT--CGTGTTTTAAAAAAAAA
*
55761490 TGTCGTGTTTTAAGAAAA
1 T-TCGTGTTTTAAAAAAA
55761508 TTTCGTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.41
21 16 0.50
22 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (19 bp):
TTCGTGTTTTAAAAAAAAA
Found at i:55761513 original size:18 final size:17
Alignment explanation
Indices: 55761484--55761594 Score: 93
Period size: 18 Copynumber: 6.4 Consensus size: 17
55761474 GTGTTTCAAA
*
55761484 AAAAAATGTCGTGTTTT
1 AAAAAATTTCGTGTTTT
*
55761501 AAGAAAATTTCGTTTTTTCT
1 AA-AAAATTTCG-TGTTT-T
*
55761521 AAAAATTTTCGTGTTTCT
1 AAAAAATTTCGTGTTT-T
*
55761539 -AAAATTTTCGTG-TTT
1 AAAAAATTTCGTGTTTT
*
55761554 -ACAAATTCTCGTGTTTT
1 AAAAAATT-TCGTGTTTT
*
55761571 CAAAAATTCTCGTGTTTT
1 AAAAAATT-TCGTGTTTT
55761589 AAAAAA
1 AAAAAA
55761595 AACTTTCGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
15 6 0.08
16 7 0.09
17 17 0.21
18 35 0.44
19 12 0.15
20 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (17 bp):
AAAAAATTTCGTGTTTT
Found at i:55761565 original size:16 final size:17
Alignment explanation
Indices: 55761516--55761593 Score: 86
Period size: 17 Copynumber: 4.5 Consensus size: 17
55761506 AATTTCGTTT
*
55761516 TTTCTAAAAATTTTCGTG
1 TTTC-AAAAATTCTCGTG
* *
55761534 TTTCTAAAATTTTCGTG
1 TTTCAAAAATTCTCGTG
*
55761551 TTT-ACAAATTCTCGTG
1 TTTCAAAAATTCTCGTG
55761567 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTCTCGTG
*
55761585 TTTTAAAAA
1 TTTCAAAAA
55761594 AAACTTTCGT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
16 10 0.19
17 26 0.50
18 16 0.31
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.47
Consensus pattern (17 bp):
TTTCAAAAATTCTCGTG
Found at i:55765322 original size:16 final size:16
Alignment explanation
Indices: 55765298--55765347 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
55765288 GACAGTCATG
55765298 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
*
55765314 AAAACAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
* *
55765330 AAAAGGACAAGAAAAA
1 AAAAGAAAAAGAAAAA
55765346 AA
1 AA
55765348 TAAAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:55765954 original size:13 final size:12
Alignment explanation
Indices: 55765932--55765966 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
55765922 TCATTCATTC
55765932 AAAAGCAAAAAAG
1 AAAAG-AAAAAAG
55765945 AAAAAGAAAAAAG
1 -AAAAGAAAAAAG
55765958 AAAAGAAAA
1 AAAAGAAAA
55765967 TGGAGAGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 7 0.33
14 5 0.24
ACGTcount: A:0.83, C:0.03, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:55767640 original size:72 final size:72
Alignment explanation
Indices: 55767543--55767731 Score: 269
Period size: 72 Copynumber: 2.7 Consensus size: 72
55767533 TGATGCTTTT
*
55767543 ATTTCTG-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
55767607 AATTTCA
66 AATTTCA
55767614 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
* *
55767679 ATTTTTA
66 AATTTCA
* * * ** *
55767686 GTTTATGTTTT--AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
55767732 TTTAATTTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
69 26 0.24
70 5 0.05
71 7 0.06
72 70 0.65
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (72 bp):
ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
AATTTCA
Found at i:55768002 original size:72 final size:72
Alignment explanation
Indices: 55767731--55768064 Score: 474
Period size: 72 Copynumber: 4.8 Consensus size: 72
55767721 GAGTTAAGCC
*
55767731 TTTT-AATTTTTGTTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
55767794 TTGAGG--
65 TTGAGGTA
55767800 ---T-AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
55767861 TGAGGTA
66 TGAGGTA
*
55767868 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
55767933 TTGAGGTA
65 TTGAGGTA
* *
55767941 ATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACAT
1 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
55768006 TGAGGTA
66 TGAGGTA
* * * * ** *
55768013 TTTTTAGTTTATGTTTT--AAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
55768065 TTTAATTTTT
Statistics
Matches: 244, Mismatches: 13, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
65 9 0.04
66 55 0.23
69 26 0.11
70 5 0.02
71 1 0.00
72 78 0.32
73 70 0.29
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
TGAGGTA
Found at i:55768288 original size:72 final size:72
Alignment explanation
Indices: 55768068--55768304 Score: 352
Period size: 72 Copynumber: 3.2 Consensus size: 72
55768058 TAAGCCTTTT
*
55768068 AATTTTTGTTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAG
55768132 GTAATTTC
65 GTAATTTC
*
55768140 AATTTCTGTTGTTAGAAAAAAATT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
1 AATTTCTGTT-TT----CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
55768204 TGAGGTAATTTC
61 TGAGGTAATTTC
* * *
55768216 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
55768281 TATTTTC
66 TAATTTC
55768288 AATTTCTGTTTTCAAAA
1 AATTTCTGTTTTCAAAA
55768305 AAAAAAAGAG
Statistics
Matches: 151, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
71 8 0.05
72 74 0.49
75 2 0.01
76 66 0.44
77 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:55768665 original size:145 final size:146
Alignment explanation
Indices: 55768480--55768769 Score: 512
Period size: 145 Copynumber: 2.0 Consensus size: 146
55768470 CCTTTTAATT
*
55768480 TTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAT
1 TTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAT
55768545 TTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
66 TTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
55768609 TTGAGGTAATTTCAATC
130 CTGAGGTAATTTCAATC
55768626 TTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAT
1 TTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAT
* *
55768690 TTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGC
66 TTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
*
55768755 TGAGGTATTTTCAAT
131 TGAGGTAATTTCAAT
55768770 TTCTGCTTTA
Statistics
Matches: 138, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
145 132 0.96
146 6 0.04
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (146 bp):
TTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAT
TTTCAATTTCTGCTTTTCAAAACTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
TGAGGTAATTTCAATC
Found at i:55768675 original size:72 final size:73
Alignment explanation
Indices: 55768472--55768778 Score: 505
Period size: 73 Copynumber: 4.2 Consensus size: 73
55768462 GAGTTAAGCC
* *
55768472 TTTT-AATTTTTGTTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
55768536 TTGAGGTA
66 TTGAGGTA
55768544 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
55768609 TTGAGGTA
66 TTGAGGTA
*
55768617 ATTTCAATCTT-TG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAAT-TTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
55768680 ATTGAGGTA
65 GTTGAGGTA
* *
55768689 TTTTCAATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCAC
1 TTTTCAATTTCTGCTTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
55768753 GCTGAGGTA
65 GTTGAGGTA
55768762 TTTTCAATTTCTGCTTT
1 TTTTCAATTTCTGCTTT
55768779 ACTAATTCTA
Statistics
Matches: 221, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
71 2 0.01
72 71 0.32
73 144 0.65
74 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (73 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:55768853 original size:87 final size:87
Alignment explanation
Indices: 55768697--55768861 Score: 219
Period size: 87 Copynumber: 1.9 Consensus size: 87
55768687 TATTTTCAAT
* * *
55768697 TTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGGCACGCTGAGGTA
1 TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACGCTGAGGTA
*
55768762 TTTTCAATTTCTGCTTTACTAA
66 TTTTCAAATTCTGCTTTACTAA
* *
55768784 TTCTACTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCCACACGCTGAG
1 TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGG---CACGCTGAG
*
55768846 GTCTTTTCAAATTCTG
63 GTATTTTCAAATTCTG
55768862 TTTTTAATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 3 0.04
85 29 0.43
86 3 0.04
87 33 0.49
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (87 bp):
TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTGAGCCTCAAGGCACGCTGAGGTA
TTTTCAAATTCTGCTTTACTAA
Found at i:55768873 original size:13 final size:13
Alignment explanation
Indices: 55768857--55768890 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
55768847 TCTTTTCAAA
55768857 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
55768870 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
55768885 TTCTGT
1 TTCTGT
55768891 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:55768882 original size:15 final size:15
Alignment explanation
Indices: 55768862--55768890 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
55768852 TCAAATTCTG
55768862 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
55768877 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
55768891 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:55769123 original size:53 final size:54
Alignment explanation
Indices: 55768975--55769347 Score: 662
Period size: 54 Copynumber: 6.9 Consensus size: 54
55768965 TACTTTTCAG
55768975 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
55769029 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
*
55769083 TTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
55769136 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
55769190 TTTCTGTTTTTCAAAAATCAAC-CATATTGCGAGAGGTGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
* *
55769243 TTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AA
* *
55769299 ATTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
55769348 GGCTCACGTG
Statistics
Matches: 307, Mismatches: 8, Indels: 7
0.95 0.02 0.02
Matches are distributed among these distances:
53 103 0.34
54 157 0.51
55 41 0.13
56 6 0.02
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (54 bp):
TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
Found at i:55769162 original size:107 final size:108
Alignment explanation
Indices: 55768975--55769347 Score: 646
Period size: 107 Copynumber: 3.5 Consensus size: 108
55768965 TACTTTTCAG
*
55768975 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
55769040 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
66 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
55769083 TTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
55769147 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
66 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
* *
55769190 TTTCTGTTTTTCAAAAATCAAC-CATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTATTTTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
*
55769254 CAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAA
66 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT--AA
*
55769299 ATTCTG-TTTTCAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTT
55769348 GGCTCACGTG
Statistics
Matches: 254, Mismatches: 6, Indels: 9
0.94 0.02 0.03
Matches are distributed among these distances:
107 186 0.73
108 36 0.14
109 32 0.13
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (108 bp):
TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
Found at i:55769657 original size:30 final size:30
Alignment explanation
Indices: 55769621--55769692 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
55769611 TTTTTTTTAA
* * *
55769621 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACCTTCATT
* *
55769651 AAATTTCACTTAGACCCCTAAACCTTCATT
1 AAATTTCATTTTGACCCCTAAACCTTCATT
55769681 AAATTTCATTTT
1 AAATTTCATTTT
55769693 AATCCTAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACCTTCATT
Found at i:55770315 original size:28 final size:32
Alignment explanation
Indices: 55770246--55770315 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 32
55770236 AGGTAACTGA
55770246 AAAGAAAAAAGAAGAGAAGAAACAGAAAAATG
1 AAAGAAAAAAGAAGAGAAGAAACAGAAAAATG
*
55770278 AAAGGAAAAAG-AGAG-A-AAA-AGATAAAAT-
1 AAAGAAAAAAGAAGAGAAGAAACAGA-AAAATG
55770306 AAAGAAAAAA
1 AAAGAAAAAA
55770316 TAAAACCCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 12 0.34
29 8 0.23
30 1 0.03
31 4 0.11
32 10 0.29
ACGTcount: A:0.74, C:0.01, G:0.20, T:0.04
Consensus pattern (32 bp):
AAAGAAAAAAGAAGAGAAGAAACAGAAAAATG
Found at i:55770935 original size:17 final size:17
Alignment explanation
Indices: 55770915--55770954 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
55770905 CGTTTTTAAA
55770915 AAAAATT-TCATGTCTTC
1 AAAAATTCTCATGT-TTC
*
55770932 AAAATTTCTCATGTTTC
1 AAAAATTCTCATGTTTC
55770949 AAAAAT
1 AAAAAT
55770955 AATAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (17 bp):
AAAAATTCTCATGTTTC
Found at i:55771031 original size:16 final size:16
Alignment explanation
Indices: 55771010--55771058 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 16
55771000 TTCTTTCTAA
55771010 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
55771026 AAAAATTTCCGTG-TTTC
1 AAAAA-TT-CGTGTTTTC
55771043 AAAAATTCGTGTTTTC
1 AAAAATTCGTGTTTTC
55771059 GTGTTTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.13
16 11 0.37
17 11 0.37
18 4 0.13
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (16 bp):
AAAAATTCGTGTTTTC
Found at i:55771038 original size:18 final size:18
Alignment explanation
Indices: 55771017--55771198 Score: 69
Period size: 18 Copynumber: 9.8 Consensus size: 18
55771007 TAAAAAAATT
55771017 CGTGTTTTCAAAAATTTC
1 CGTGTTTTCAAAAATTTC
*
55771035 CGTG-TTTCAAAAATTCGTGTTTT
1 CGTGTTTTCAAAAA------TTTC
*
55771058 CGTGTTTTCAAAAAAAATTCC
1 CGTGTTTTC---AAAAATTTC
*
55771079 CGTG-TTTCAAAAAAAATGT-
1 CGTGTTTTC---AAAAATTTC
*
55771098 CGTGTTTTAAGAAAATTT-
1 CGTGTTTTCA-AAAATTTC
* *
55771116 CGTTTTTTCTAAAAATTTT
1 CGTGTTTTC-AAAAATTTC
* *
55771135 CGTG-TTTCTAAAATTTT
1 CGTGTTTTCAAAAATTTC
*
55771152 CGTG-TTT-ACAAA-TTC
1 CGTGTTTTCAAAAATTTC
55771167 TCGTGTTTTCAAAAA-TTC
1 -CGTGTTTTCAAAAATTTC
55771185 TCGTGTTTT-AAAAA
1 -CGTGTTTTCAAAAA
55771199 AAAACTTTCG
Statistics
Matches: 132, Mismatches: 15, Indels: 35
0.73 0.08 0.19
Matches are distributed among these distances:
15 2 0.02
16 7 0.05
17 33 0.25
18 44 0.33
19 8 0.06
20 16 0.12
21 6 0.05
23 7 0.05
24 4 0.03
27 5 0.04
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTC
Found at i:55771101 original size:19 final size:18
Alignment explanation
Indices: 55771056--55771147 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 18
55771046 AATTCGTGTT
55771056 TTCGTGTTTTCAAAAAAAA
1 TTCGTG-TTTCAAAAAAAA
55771075 TTCCCGTGTTTCAAAAAAAA
1 TT--CGTGTTTCAAAAAAAA
* * *
55771095 TGTCGTGTTTTAAGAAAAT
1 T-TCGTGTTTCAAAAAAAA
* * **
55771114 TTCGTTTTTTCTAAAAATT
1 TTCG-TGTTTCAAAAAAAA
55771133 TTCGTGTTTCTAAAA
1 TTCGTGTTTC-AAAA
55771148 TTTTCGTGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
18 8 0.14
19 32 0.55
20 13 0.22
21 5 0.09
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (18 bp):
TTCGTGTTTCAAAAAAAA
Found at i:55771199 original size:18 final size:18
Alignment explanation
Indices: 55771069--55771199 Score: 101
Period size: 18 Copynumber: 7.3 Consensus size: 18
55771059 GTGTTTTCAA
* *
55771069 AAAAAATTCCCGTGTTTCA
1 AAAAAATTCTCGTGTTT-T
* *
55771088 AAAAAAATGTCGTGTTTT
1 AAAAAATTCTCGTGTTTT
*
55771106 AAGAAAATT-TCGTTTTTT
1 AA-AAAATTCTCGTGTTTT
* *
55771124 CTAAAAATTTTCGTGTTTCT
1 -AAAAAATTCTCGTGTTT-T
*
55771144 --AAAATTTTCGTG-TTT
1 AAAAAATTCTCGTGTTTT
*
55771159 -ACAAATTCTCGTGTTTT
1 AAAAAATTCTCGTGTTTT
*
55771176 CAAAAATTCTCGTGTTTT
1 AAAAAATTCTCGTGTTTT
55771194 AAAAAA
1 AAAAAA
55771200 AAACTTTCGT
Statistics
Matches: 93, Mismatches: 12, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
15 1 0.01
16 12 0.13
17 15 0.16
18 37 0.40
19 27 0.29
20 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (18 bp):
AAAAAATTCTCGTGTTTT
Found at i:55773388 original size:25 final size:25
Alignment explanation
Indices: 55773360--55773407 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
55773350 TTATAAATTT
* *
55773360 TAAAAATTATGAAGATTATCTAATC
1 TAAAAATTATGAAAATGATCTAATC
55773385 TAAAAATTATGAAAATGATCTAA
1 TAAAAATTATGAAAATGATCTAA
55773408 CTTTAAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.33
Consensus pattern (25 bp):
TAAAAATTATGAAAATGATCTAATC
Found at i:55773769 original size:5 final size:5
Alignment explanation
Indices: 55773759--55773795 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
55773749 TGAATGAAAT
* *
55773759 TCGAG TCGAG TCGAA TCGAG TCGAG TCGAG TTGAG TC
1 TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG TCGAG TC
55773796 AAATCAAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.24
Consensus pattern (5 bp):
TCGAG
Found at i:55774061 original size:24 final size:24
Alignment explanation
Indices: 55774034--55774080 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
55774024 TATTTTTTAG
* * *
55774034 AATTTTTAGAATTTTTTAAATATA
1 AATTTTGAAAATTTTATAAATATA
55774058 AATTTTGAAAATTTTATAAATAT
1 AATTTTGAAAATTTTATAAATAT
55774081 TTTGAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
AATTTTGAAAATTTTATAAATATA
Found at i:55774088 original size:18 final size:20
Alignment explanation
Indices: 55774059--55774110 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
55774049 TTAAATATAA
*
55774059 ATTTTGAAAATTTTATAAA-T
1 ATTTTG-AAATTTTAAAAATT
55774079 ATTTTG-AATTTTAAAAATT
1 ATTTTGAAATTTTAAAAATT
55774098 ATTTTGAAATTTT
1 ATTTTGAAATTTT
55774111 TTTCGTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.34
19 7 0.24
20 12 0.41
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (20 bp):
ATTTTGAAATTTTAAAAATT
Found at i:55782838 original size:50 final size:51
Alignment explanation
Indices: 55782763--55782864 Score: 163
Period size: 50 Copynumber: 2.0 Consensus size: 51
55782753 TTATCTCAAC
* *
55782763 TTTAAGGTGATAATTTGGTATAAAAATTTATTGTG-CAAGTCACATT-TCCA
1 TTTAAGGTGATAAATTGGTATAAAAATTTAATGTGACAAGTCAC-TTCTCCA
55782813 TTTAAGGTGATAAATTGGTATAAAAATTTAATGTGACAAGTCACTTCTCCA
1 TTTAAGGTGATAAATTGGTATAAAAATTTAATGTGACAAGTCACTTCTCCA
55782864 T
1 T
55782865 ATCATGTCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
50 35 0.73
51 13 0.27
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (51 bp):
TTTAAGGTGATAAATTGGTATAAAAATTTAATGTGACAAGTCACTTCTCCA
Found at i:55783345 original size:5 final size:5
Alignment explanation
Indices: 55783331--55783370 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
55783321 TTTTTATGTA
*
55783331 ATAA- ATAAT ATAAT ATAA- AAAAT A-AAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
55783371 TTAAAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
4 11 0.34
5 21 0.66
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (5 bp):
ATAAT
Found at i:55783360 original size:18 final size:17
Alignment explanation
Indices: 55783333--55783366 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
55783323 TTTATGTAAT
55783333 AAATAATATAATATAAA
1 AAATAATATAATATAAA
55783350 AAATAAATATAATATAA
1 AAAT-AATATAATATAA
55783367 TATATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATAATATAATATAAA
Found at i:55792376 original size:23 final size:23
Alignment explanation
Indices: 55792296--55792403 Score: 80
Period size: 23 Copynumber: 4.8 Consensus size: 23
55792286 CAAACTACAA
* *
55792296 AGAATATTTACTATTCATACCAG
1 AGAATATTTACTGTTCATGCCAG
* * **
55792319 AGAAT-CTTACTGTTTC-GGTTAG
1 AGAATATTTACTG-TTCATGCCAG
*
55792341 AG-AT-TTCTACTGTTCATGTCAG
1 AGAATATT-TACTGTTCATGCCAG
55792363 AGAATATTTACTGTTCATGCCAG
1 AGAATATTTACTGTTCATGCCAG
* * *
55792386 ATAATATTTCCTATTCAT
1 AGAATATTTACTGTTCAT
55792404 CTTCATTCAT
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
21 6 0.09
22 20 0.30
23 39 0.58
24 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (23 bp):
AGAATATTTACTGTTCATGCCAG
Found at i:55798586 original size:31 final size:31
Alignment explanation
Indices: 55798548--55798616 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
55798538 CTAATATGGA
* *
55798548 TAAATTTGTTAA-AAGTTTTTATGAAGTTTTT
1 TAAATTTGCTAATAACTTTTTATGAA-TTTTT
* *
55798579 TAAATTTGCTAATTACTTTTTATTAATTTTT
1 TAAATTTGCTAATAACTTTTTATGAATTTTT
55798610 TAAATTT
1 TAAATTT
55798617 TTATGAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 23 0.70
32 10 0.30
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (31 bp):
TAAATTTGCTAATAACTTTTTATGAATTTTT
Found at i:55802689 original size:22 final size:22
Alignment explanation
Indices: 55802646--55802689 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
55802636 TTTTTTGAAA
*
55802646 AATATTTATATTACTTTAATAT
1 AATATTTATATAACTTTAATAT
*
55802668 AATATTTA-ATAATTTTATATAT
1 AATATTTATATAACTTTA-ATAT
55802690 TTTTCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
AATATTTATATAACTTTAATAT
Found at i:55805197 original size:42 final size:42
Alignment explanation
Indices: 55805104--55805201 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
55805094 TTCCGATTAA
* * *** *
55805104 CCTTAATGGGTTTCCGTTCATCTCTTTTGAGCTTTTGTTTAAC
1 CCTT-ATGGGTTTCCGTTCAGCACTTTTGAGCTCCCGTTCAAC
* * *
55805147 CCTAATGGGTTTTCGTTCAGCACTTTTGAGCTCCCGTTCAAT
1 CCTTATGGGTTTCCGTTCAGCACTTTTGAGCTCCCGTTCAAC
55805189 CCTTATGGGTTTC
1 CCTTATGGGTTTC
55805202 TCTTAGCACC
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.44
Consensus pattern (42 bp):
CCTTATGGGTTTCCGTTCAGCACTTTTGAGCTCCCGTTCAAC
Found at i:55805351 original size:16 final size:16
Alignment explanation
Indices: 55805330--55805375 Score: 92
Period size: 16 Copynumber: 2.9 Consensus size: 16
55805320 AAAGTCTTAT
55805330 TGTAATTATTGGTAAG
1 TGTAATTATTGGTAAG
55805346 TGTAATTATTGGTAAG
1 TGTAATTATTGGTAAG
55805362 TGTAATTATTGGTA
1 TGTAATTATTGGTA
55805376 TTAATATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (16 bp):
TGTAATTATTGGTAAG
Found at i:55811002 original size:4 final size:4
Alignment explanation
Indices: 55810993--55811029 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
55810983 ACATTTACCC
55810993 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
55811030 ATTTTAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:55812467 original size:7 final size:7
Alignment explanation
Indices: 55812455--55812489 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
55812445 GCGGTGGTGG
55812455 TTTTAGT
1 TTTTAGT
55812462 TTTTAGT
1 TTTTAGT
55812469 TTTTAGT
1 TTTTAGT
55812476 TTTTAGT
1 TTTTAGT
*
55812483 TTCTAGT
1 TTTTAGT
55812490 CATATCTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.14, C:0.03, G:0.14, T:0.69
Consensus pattern (7 bp):
TTTTAGT
Found at i:55813255 original size:15 final size:15
Alignment explanation
Indices: 55813235--55813276 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
55813225 CTATGCATAA
55813235 ATTATATTTTTAATC
1 ATTATATTTTTAATC
*
55813250 ATTATA-TTTTAATT
1 ATTATATTTTTAATC
*
55813264 TTTATATTTTTAA
1 ATTATATTTTTAA
55813277 AATTTAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTATATTTTTAATC
Found at i:55821111 original size:21 final size:22
Alignment explanation
Indices: 55821058--55821100 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
55821048 CTTATAGAAA
*
55821058 ATATT-TTAAAA-TTCAAATAT
1 ATATTATTAAAATTTCAAAAAT
55821078 ATATTATTAAAATTTCAAAAAT
1 ATATTATTAAAATTTCAAAAAT
55821100 A
1 A
55821101 ATATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 6 0.30
22 9 0.45
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATTATTAAAATTTCAAAAAT
Found at i:55822326 original size:6 final size:6
Alignment explanation
Indices: 55822315--55822355 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
55822305 CAACTTTATT
55822315 AAATTA AAATTA AAATTA AAATTA TAGAA-TA AAATTA AAAT
1 AAATTA AAATTA AAATTA AAATTA -A-AATTA AAATTA AAAT
55822356 ATATTTACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 2 0.06
6 25 0.78
7 3 0.09
8 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:55823045 original size:29 final size:30
Alignment explanation
Indices: 55823004--55823084 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
55822994 GAATTGGACC
55823004 AAATCAAAATTTCATATATAAAATTACACA-
1 AAATC-AAATTTCATATATAAAATTACACAT
*
55823034 AAATCAAATTTCACATATAAAATTACACATT
1 AAATCAAATTTCATATATAAAATTACACA-T
* *
55823065 AAATCAAAATTCATGTATAA
1 AAATCAAATTTCATATATAA
55823085 TTTTAATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 23 0.51
30 5 0.11
31 17 0.38
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.31
Consensus pattern (30 bp):
AAATCAAATTTCATATATAAAATTACACAT
Found at i:55823062 original size:14 final size:14
Alignment explanation
Indices: 55823009--55823067 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
55822999 GGACCAAATC
* *
55823009 AAAATTTCATATAT
1 AAAATTACACATAT
*
55823023 AAAATTACACAAAAT
1 AAAATTACAC-ATAT
* *
55823038 CAAATTTCACATAT
1 AAAATTACACATAT
55823052 AAAATTACACAT-T
1 AAAATTACACATAT
55823065 AAA
1 AAA
55823068 TCAAAATTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 4 0.11
14 21 0.58
15 11 0.31
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATTACACATAT
Found at i:55825277 original size:5 final size:5
Alignment explanation
Indices: 55825269--55825325 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
55825259 AACTTTTTTT
*
55825269 TTTCA TTTCA TTTCA TTTTTA TTTCCA TTTCA TTTCA TTTACA TTTCTA
1 TTTCA TTTCA TTTCA -TTTCA TTT-CA TTTCA TTTCA TTT-CA TTTC-A
*
55825318 TTCCA TTT
1 TTTCA TTT
55825326 AAATTATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 27 0.61
6 17 0.39
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:55825297 original size:17 final size:17
Alignment explanation
Indices: 55825267--55825315 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
55825257 TCAACTTTTT
55825267 TTTTTCATTTCATTTCA
1 TTTTTCATTTCATTTCA
55825284 TTTTT-ATTTCCATTTCA
1 TTTTTCATTT-CATTTCA
55825301 --TTTCATTTACATTTC
1 TTTTTCATTT-CATTTC
55825316 TATTCCATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 3 0.10
16 14 0.48
17 12 0.41
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTCATTTCATTTCA
Found at i:55825297 original size:22 final size:22
Alignment explanation
Indices: 55825262--55825308 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
55825252 TCCTTTCAAC
* *
55825262 TTTTTTTTTTCATTTCATTTCA
1 TTTTTATTTCCATTTCATTTCA
55825284 TTTTTATTTCCATTTCATTTCA
1 TTTTTATTTCCATTTCATTTCA
55825306 TTT
1 TTT
55825309 ACATTTCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTTATTTCCATTTCATTTCA
Found at i:55825301 original size:27 final size:27
Alignment explanation
Indices: 55825269--55825325 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
55825259 AACTTTTTTT
*
55825269 TTTCATTTCATTT-CATTTTTATTTCCA
1 TTTCATTTCATTTACATTTCTA-TTCCA
55825296 TTTCATTTCATTTACATTTCTATTCCA
1 TTTCATTTCATTTACATTTCTATTCCA
55825323 TTT
1 TTT
55825326 AAATTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTCATTTCATTTACATTTCTATTCCA
Found at i:55825303 original size:11 final size:10
Alignment explanation
Indices: 55825269--55825325 Score: 60
Period size: 11 Copynumber: 5.3 Consensus size: 10
55825259 AACTTTTTTT
55825269 TTTCATTTCA
1 TTTCATTTCA
*
55825279 TTTCATTTTTA
1 TTTCA-TTTCA
55825290 TTTCCATTTCA
1 TTT-CATTTCA
55825301 TTTCATTTACA
1 TTTCATTT-CA
*
55825312 TTTCTATTCCA
1 TTTC-ATTTCA
55825323 TTT
1 TTT
55825326 AAATTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 10 0.25
11 25 0.62
12 5 0.12
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTCATTTCA
Found at i:55825314 original size:22 final size:22
Alignment explanation
Indices: 55825272--55825325 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
55825262 TTTTTTTTTT
**
55825272 CATTTCATTTCATTTTTATTTC
1 CATTTCATTTCATTTACATTTC
55825294 CATTTCATTTCATTTACATTTC
1 CATTTCATTTCATTTACATTTC
* *
55825316 TATTCCATTT
1 CATTTCATTT
55825326 AAATTATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.59
Consensus pattern (22 bp):
CATTTCATTTCATTTACATTTC
Found at i:55825397 original size:18 final size:16
Alignment explanation
Indices: 55825361--55825406 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 16
55825351 TAATTATATC
55825361 TCATTTCAATTTTTTT
1 TCATTTCAATTTTTTT
*
55825377 TCATTTCAGTTTTGGTTT
1 TCATTTCAATTTT--TTT
55825395 TCATTTCAATTT
1 TCATTTCAATTT
55825407 ATAATTTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 12 0.46
18 14 0.54
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (16 bp):
TCATTTCAATTTTTTT
Found at i:55825612 original size:22 final size:23
Alignment explanation
Indices: 55825575--55825618 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
55825565 GTTATCTTTT
55825575 TTCAATTCAATATTTTTTTTCAA
1 TTCAATTCAATATTTTTTTTCAA
*
55825598 TTCATTTC-ATATTTTTTTTCA
1 TTCAATTCAATATTTTTTTTCA
55825619 TATTAATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (23 bp):
TTCAATTCAATATTTTTTTTCAA
Found at i:55825895 original size:6 final size:5
Alignment explanation
Indices: 55825871--55825951 Score: 58
Period size: 5 Copynumber: 15.6 Consensus size: 5
55825861 CTTCTTTTTT
*
55825871 TTTCA TTTCA TTTTTA TTTCCA TTTCA TTTCA TTT-- TTTCCA TTTCA
1 TTTCA TTTCA -TTTCA TTT-CA TTTCA TTTCA TTTCA TTT-CA TTTCA
* * * *
55825917 TTCCA TTTGTA TTTCCA TTTAA TTTAA TTTCA TTT
1 TTTCA TTT-CA TTT-CA TTTCA TTTCA TTTCA TTT
55825952 AAATTATCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
3 3 0.05
5 39 0.64
6 19 0.31
ACGTcount: A:0.20, C:0.17, G:0.01, T:0.62
Consensus pattern (5 bp):
TTTCA
Found at i:55825896 original size:22 final size:22
Alignment explanation
Indices: 55825871--55825946 Score: 95
Period size: 22 Copynumber: 3.6 Consensus size: 22
55825861 CTTCTTTTTT
55825871 TTTCATTTCATTTTTATTTCCA
1 TTTCATTTCATTTTTATTTCCA
55825893 TTTCATTTCA--TTT-TTTCCA
1 TTTCATTTCATTTTTATTTCCA
* *
55825912 TTTCATTCCATTTGTATTTCCA
1 TTTCATTTCATTTTTATTTCCA
* *
55825934 TTTAATTTAATTT
1 TTTCATTTCATTT
55825947 CATTTAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
19 15 0.33
20 3 0.07
21 2 0.04
22 26 0.57
ACGTcount: A:0.20, C:0.17, G:0.01, T:0.62
Consensus pattern (22 bp):
TTTCATTTCATTTTTATTTCCA
Found at i:55825911 original size:19 final size:19
Alignment explanation
Indices: 55825867--55825924 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
55825857 TCATCTTCTT
*
55825867 TTTTTTTCATTTCATTT--
1 TTTTTTCCATTTCATTTCA
*
55825884 TTATTTCCATTTCATTTCA
1 TTTTTTCCATTTCATTTCA
*
55825903 TTTTTTCCATTTCATTCCA
1 TTTTTTCCATTTCATTTCA
55825922 TTT
1 TTT
55825925 GTATTTCCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 15 0.43
19 20 0.57
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTCCATTTCATTTCA
Found at i:55825971 original size:21 final size:21
Alignment explanation
Indices: 55825947--55826128 Score: 109
Period size: 22 Copynumber: 7.9 Consensus size: 21
55825937 AATTTAATTT
55825947 CATTTAAATT-ATCTTTTTTTC
1 CATTTAAATTAAT-TTTTTTTC
55825968 CATTTAAATTTAATTTTTTTTC
1 CATTTAAA-TTAATTTTTTTTC
* *
55825990 TCATTTTATTTAAATTATTTTTTTC
1 -CATTTAAATT-AA-T-TTTTTTTC
55826015 CATTTAAATTTAATTTTTTTCTC
1 CATTTAAA-TTAATTTTTTT-TC
* *
55826038 ATTTCATTTAAATT-ATCTTTCTTCC
1 ----CATTTAAATTAAT-TTTTTTTC
*
55826063 CATTTTAATTTAATTTTTTTCTC
1 CA-TTTAAATTAATTTTTTT-TC
55826086 ATTTCATTTAAATT-ATCTTTTTTTC
1 ----CATTTAAATTAAT-TTTTTTTC
*
55826111 CATTTAAATTTATTTTTT
1 CATTTAAATTAATTTTTT
55826129 CCCATTTCAC
Statistics
Matches: 129, Mismatches: 10, Indels: 44
0.70 0.05 0.24
Matches are distributed among these distances:
21 25 0.19
22 32 0.25
23 16 0.12
24 9 0.07
25 17 0.13
26 20 0.16
27 10 0.08
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.63
Consensus pattern (21 bp):
CATTTAAATTAATTTTTTTTC
Found at i:55826012 original size:48 final size:48
Alignment explanation
Indices: 55825943--55826193 Score: 384
Period size: 48 Copynumber: 5.3 Consensus size: 48
55825933 ATTTAATTTA
55825943 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTTCTC
1 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAA-TTTTTTTCTC
*
55825992 ATTTTATTTAAATTA--TTTTTTTCCATTTAAATTTAATTTTTTTCTC
1 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTC
* * *
55826038 ATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTCTC
1 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTC
*
55826086 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTT-A-TTTTTTCCC
1 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTC
* * *
55826132 ATTTCACTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTCTC
1 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTC
*
55826180 ATTTCATCTAAATT
1 ATTTCATTTAAATT
55826194 TAATTCTTTT
Statistics
Matches: 183, Mismatches: 15, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
46 65 0.36
47 23 0.13
48 81 0.44
49 14 0.08
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (48 bp):
ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTCTC
Found at i:55826143 original size:94 final size:94
Alignment explanation
Indices: 55825943--55826193 Score: 398
Period size: 94 Copynumber: 2.7 Consensus size: 94
55825933 ATTTAATTTA
* * *
55825943 ATTTCATTTAAATTATCTTTTTTTCCATTTAAATTTAATTTTTTTTCTCATTTTATTTAAATTAT
1 ATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAA-TTTTTTTCTCATTTCATTTAAATTAT
*
55826008 TTTTTTCCATTTAAATTTAATTTTTTTCTC
65 TTTTTTCCATTTAAATTTAATTTTTTTCCC
*
55826038 ATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATC
1 ATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTA--
55826103 TTTTTTTCCATTTAAATTT-A-TTTTTTCCC
64 TTTTTTTCCATTTAAATTTAATTTTTTTCCC
* *
55826132 ATTTCACTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTCTCATTTCATCTAAATT
1 ATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATT
55826194 TAATTCTTTT
Statistics
Matches: 146, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
94 91 0.62
95 36 0.25
96 19 0.13
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (94 bp):
ATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATT
TTTTTCCATTTAAATTTAATTTTTTTCCC
Found at i:55826166 original size:21 final size:21
Alignment explanation
Indices: 55825997--55826166 Score: 76
Period size: 21 Copynumber: 7.4 Consensus size: 21
55825987 TTCTCATTTT
55825997 ATTTAAATTAT-TTT-TTTCC
1 ATTTAAATTATCTTTCTTTCC
* *
55826016 ATTTAAATTTAATTTTTTTCTCATTTC
1 ATTTAAA-TT-A--TCTTTCT--TTCC
*
55826043 ATTTAAATTATCTTTCTTCCC
1 ATTTAAATTATCTTTCTTTCC
* * *
55826064 ATTTTAATTTAATTTTTTTCTCATTTC
1 A-TTTAAATT-A--TCTTTCT--TTCC
*
55826091 ATTTAAATTATCTTTTTTTCC
1 ATTTAAATTATCTTTCTTTCC
*
55826112 ATTTAAATTTATTTTTTCCCATTT-C
1 ATTTAAA-TTA-TCTTT--C-TTTCC
*
55826137 ACTTAAATTATCTTTCTTTCC
1 ATTTAAATTATCTTTCTTTCC
*
55826158 ATTTTAATT
1 ATTTAAATT
55826167 TAATTTTTTT
Statistics
Matches: 113, Mismatches: 18, Indels: 38
0.67 0.11 0.22
Matches are distributed among these distances:
19 7 0.06
20 5 0.04
21 23 0.20
22 10 0.09
23 21 0.19
24 6 0.05
25 16 0.14
26 12 0.11
27 13 0.12
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTAAATTATCTTTCTTTCC
Found at i:55826216 original size:73 final size:71
Alignment explanation
Indices: 55825968--55826241 Score: 244
Period size: 73 Copynumber: 3.8 Consensus size: 71
55825958 TCTTTTTTTC
* * *
55825968 CATTTAAATTTAATTTTTTTTCTCATTTTATTTAAATTATTTTTTTCCATTTAAATTTAATTTTT
1 CATTTAAATTT-A-TTCTTTTCT-ATTTCATTTAAATTATTTTTTTCCATTTTAATTTAATTTTT
55826033 TTCTCATTT
63 TTCTCATTT
** * *
55826042 CATTTAAA-TTA-TC-TTTCT-TCCCATTTTAATTTAATTTTTTTCTCA-TTTCATTTAAATTAT
1 CATTTAAATTTATTCTTTTCTATTTCA-TTTAAATT-ATTTTTTTC-CATTTTAATTT-AATT-T
*
55826102 CTTTT-T--TTC
61 -TTTTCTCATTT
* *
55826111 CATTTAAATTTATT-TTTTCCCATTTCACTTAAATTATCTTTCTTTCCATTTTAATTTAATTTTT
1 CATTTAAATTTATTCTTTT-CTATTTCATTTAAATTAT-TTT-TTTCCATTTTAATTTAATTTTT
55826175 TTCTCATTT
63 TTCTCATTT
*
55826184 CATCTAAATTTAATTCTTTTCTA-TTCATTTAAATTATCTTTCTTTCCATTTTAATTTA
1 CATTTAAATTT-ATTCTTTTCTATTTCATTTAAATTAT-TTT-TTTCCATTTTAATTTA
55826242 CGTTTATTAC
Statistics
Matches: 163, Mismatches: 18, Indels: 39
0.74 0.08 0.18
Matches are distributed among these distances:
67 2 0.01
68 7 0.04
69 30 0.18
70 14 0.09
71 10 0.06
72 21 0.13
73 62 0.38
74 13 0.08
75 4 0.02
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (71 bp):
CATTTAAATTTATTCTTTTCTATTTCATTTAAATTATTTTTTTCCATTTTAATTTAATTTTTTTC
TCATTT
Found at i:55829435 original size:53 final size:53
Alignment explanation
Indices: 55829378--55829493 Score: 137
Period size: 53 Copynumber: 2.2 Consensus size: 53
55829368 CAAAATATTT
* *
55829378 TTTTTCTTTTTTTAAATACA-CTGGTGCCGGCCATCTA-TTGGCCAGCACCAAAA
1 TTTTT-TTTTTTTAAATACATCTGGTGCCAGCCAT-TACATGGCCAGCACCAAAA
* * * * *
55829431 TTTTTTTTTATTAAATATATTTGGTGCCAGCCATTACATGGCCAGGACCCAAA
1 TTTTTTTTTTTTAAATACATCTGGTGCCAGCCATTACATGGCCAGCACCAAAA
55829484 TTTTTTTTTT
1 TTTTTTTTTT
55829494 AAAATATACT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
52 14 0.26
53 39 0.74
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (53 bp):
TTTTTTTTTTTTAAATACATCTGGTGCCAGCCATTACATGGCCAGCACCAAAA
Found at i:55829658 original size:108 final size:107
Alignment explanation
Indices: 55829451--55829754 Score: 358
Period size: 108 Copynumber: 2.8 Consensus size: 107
55829441 TTAAATATAT
* * * *
55829451 TTGGTGCC-AGCCATTACATGGCCAGGACCCAAATTTTTTTTTTAAAATATACTAGTGTCAACCA
1 TTGGTGCCGA-CCATTACATGGCCAGCACCCAAA--TTTTTTTT-AAATAT-CTGGTGCCAGCCA
* * *
55829515 TCAGTGTTCCAAAATTAAAAAAATACATTGGGAGCCGGAAATTGTAC
61 TCAGTGTTCCAAAATAAAAAAAATACATTGAGAGCCGAAAATTGTAC
*
55829562 TTGGTGCCGACCATTACATGGCCATCACCCAAATTTTATTTTAAATATCTGGTGCCAGCCATCAG
1 TTGGTGCCGACCATTACATGGCCAGCACCCAAATTTT-TTTTAAATATCTGGTGCCAGCCATCAG
* *
55829627 TGTTTCAAAATAAAAAAAATGCATTGAGAGCCGAAAATTGTAC
65 TGTTCCAAAATAAAAAAAATACATTGAGAGCCGAAAATTGTAC
* * * * * *
55829670 CTGGTGCTGGCCATTACATGGCTAGCACCCAAAATTTTTTTTAAATACACTGGTGCCAGTCATCA
1 TTGGTGCCGACCATTACATGGCCAGCACCC-AAATTTTTTTTAAATA-TCTGGTGCCAGCCATCA
* * *
55829735 ATGTCCCAAAGTAAAAAAAA
64 GTGTTCCAAAATAAAAAAAA
55829755 AATGTGGCTT
Statistics
Matches: 168, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
108 86 0.51
109 48 0.29
110 4 0.02
111 29 0.17
112 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (107 bp):
TTGGTGCCGACCATTACATGGCCAGCACCCAAATTTTTTTTAAATATCTGGTGCCAGCCATCAGT
GTTCCAAAATAAAAAAAATACATTGAGAGCCGAAAATTGTAC
Found at i:55830172 original size:6 final size:7
Alignment explanation
Indices: 55830151--55830175 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
55830141 ACTAACTTAG
55830151 AATTAAA
1 AATTAAA
55830158 AATTAAA
1 AATTAAA
55830165 AATTAAA
1 AATTAAA
55830172 AATT
1 AATT
55830176 TTAATGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AATTAAA
Found at i:55837277 original size:16 final size:17
Alignment explanation
Indices: 55837247--55837279 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
55837237 ATTACTATAA
55837247 TTAAAAAATATAATATT
1 TTAAAAAATATAATATT
55837264 TTAAAAAATA-AATATT
1 TTAAAAAATATAATATT
55837280 AAATGTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAAATATAATATT
Found at i:55839718 original size:18 final size:18
Alignment explanation
Indices: 55839697--55839747 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
55839687 AATTTCAAAG
55839697 AAATATATAAAAATACAT
1 AAATATATAAAAATACAT
* ** *
55839715 AAATATTTTCAAATATAT
1 AAATATATAAAAATACAT
55839733 ATAAT-TATAAAAATA
1 A-AATATATAAAAATA
55839748 AAAAAATATT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
18 22 0.88
19 3 0.12
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATATATAAAAATACAT
Found at i:55843696 original size:17 final size:16
Alignment explanation
Indices: 55843667--55843701 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
55843657 GTGAAGCAAT
55843667 AAAGAAAAAAAGAAGA
1 AAAGAAAAAAAGAAGA
55843683 AAAGAAAAAGAAGAAGA
1 AAAGAAAAA-AAGAAGA
55843700 AA
1 AA
55843702 GGAATAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAAAGAAGA
Found at i:55845699 original size:23 final size:24
Alignment explanation
Indices: 55845672--55845718 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
55845662 TAATTTTTCA
55845672 AAAAAAATTCAAA-AAAA-TTATTTG
1 AAAAAAA-T-AAATAAAATTTATTTG
55845696 AAAAAAATAAATAAAATTTATTT
1 AAAAAAATAAATAAAATTTATTT
55845719 CTAGGTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.14
23 5 0.24
24 13 0.62
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (24 bp):
AAAAAAATAAATAAAATTTATTTG
Found at i:55846094 original size:25 final size:25
Alignment explanation
Indices: 55846066--55846119 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
55846056 CTTAAAATAC
*
55846066 TATT-AATTGATAAATTAATTTTATT
1 TATTAAATTGA-AAATTAAATTTATT
*
55846091 TATTAAATTTAAAATTAAATTTATT
1 TATTAAATTGAAAATTAAATTTATT
55846116 TATT
1 TATT
55846120 TTTAGTGTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TATTAAATTGAAAATTAAATTTATT
Found at i:55851530 original size:17 final size:18
Alignment explanation
Indices: 55851475--55851535 Score: 65
Period size: 17 Copynumber: 3.5 Consensus size: 18
55851465 TTAAGATTAC
*
55851475 TATATAAAAATT-TTCAA
1 TATATAAAAATTATTAAA
* *
55851492 TAAATAAAAATGTATAAAA
1 TATATAAAAAT-TATTAAA
55851511 TATAT-AAAATTATTAAA
1 TATATAAAAATTATTAAA
55851528 TAT-TAAAA
1 TATATAAAA
55851536 TAAAATAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
16 1 0.03
17 22 0.61
18 6 0.17
19 7 0.19
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
TATATAAAAATTATTAAA
Found at i:55854319 original size:6 final size:6
Alignment explanation
Indices: 55854294--55854332 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
55854284 TATTCAACGA
* *
55854294 ATTTAT ATTCAAT ATATAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATT-TAT ATTTAT ATTTAT ATTTAT ATTTAT AT
55854333 AACATGTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (6 bp):
ATTTAT
Found at i:55862395 original size:20 final size:19
Alignment explanation
Indices: 55862345--55862404 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
55862335 TTGTACGGGA
55862345 TTGCACTTTGGTGCCTTTG
1 TTGCACTTTGGTGCCTTTG
* * *
55862364 TTACAGTTTGGTGTCTTTG
1 TTGCACTTTGGTGCCTTTG
*
55862383 TTTGCACTTTGGTGCCTCTG
1 -TTGCACTTTGGTGCCTTTG
55862403 TT
1 TT
55862405 ACGCATCTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.07, C:0.18, G:0.25, T:0.50
Consensus pattern (19 bp):
TTGCACTTTGGTGCCTTTG
Found at i:55864246 original size:64 final size:63
Alignment explanation
Indices: 55864127--55864247 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 63
55864117 CTGTGGGGTT
* * *
55864127 TCACACGGCCTGACACACGCCTGTGTCTCTGGCCCATGTGGTCTCCAAATTACAAACAGTGAG
1 TCACACGGCCTGACACACGCCTGTGTCTCTGACCCATGTGGACTCCAAATCACAAACAGTGAG
* * * **
55864190 TCACACGGTCTGGACACATG-CTCGTGTCTCTGACCCGTGTGGACTGTAAATCACAAAC
1 TCACACGGCCT-GACACACGCCT-GTGTCTCTGACCCATGTGGACTCCAAATCACAAAC
55864248 TGTAACACCC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
63 12 0.25
64 36 0.75
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (63 bp):
TCACACGGCCTGACACACGCCTGTGTCTCTGACCCATGTGGACTCCAAATCACAAACAGTGAG
Done.