Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 187 of 208
Found at i:58613913 original size:23 final size:23
Alignment explanation
Indices: 58613887--58613938 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
58613877 AATTAAAAAG
58613887 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
58613910 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
58613933 ATGAAA
1 ATGAAA
58613939 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:58613999 original size:23 final size:23
Alignment explanation
Indices: 58613973--58614024 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
58613963 AATTAAAAAG
58613973 ATGAAAGCAT-TATAGCTATCATT
1 ATGAAAGCATAT-TAGCTATCATT
*
58613996 ATGAAAGCATATTAGCTATTATT
1 ATGAAAGCATATTAGCTATCATT
58614019 ATGAAA
1 ATGAAA
58614025 CCAAGTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:58614010 original size:86 final size:86
Alignment explanation
Indices: 58613860--58614034 Score: 341
Period size: 86 Copynumber: 2.0 Consensus size: 86
58613850 TTATTAATTG
58613860 GCAACTTGCCAATTAATAATTAAAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAG
1 GCAACTTGCCAATTAATAATTAAAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAG
58613925 CTATTATTATGAAACCAAGTT
66 CTATTATTATGAAACCAAGTT
*
58613946 GCAAGTTGCCAATTAATAATTAAAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAG
1 GCAACTTGCCAATTAATAATTAAAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAG
58614011 CTATTATTATGAAACCAAGTT
66 CTATTATTATGAAACCAAGTT
58614032 GCA
1 GCA
58614035 TATCAACTTG
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.31
Consensus pattern (86 bp):
GCAACTTGCCAATTAATAATTAAAAAGATGAAAGCATTATAGCTATCATTATGAAAGCATATTAG
CTATTATTATGAAACCAAGTT
Found at i:58618506 original size:20 final size:20
Alignment explanation
Indices: 58618481--58618518 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
58618471 TGGTTTTAGC
58618481 CTTCTGGTAAGCTACTCTTT
1 CTTCTGGTAAGCTACTCTTT
*
58618501 CTTCTGTTAAGCTACTCT
1 CTTCTGGTAAGCTACTCT
58618519 ATTGATGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.26, G:0.13, T:0.45
Consensus pattern (20 bp):
CTTCTGGTAAGCTACTCTTT
Found at i:58623169 original size:135 final size:135
Alignment explanation
Indices: 58622927--58623193 Score: 315
Period size: 135 Copynumber: 2.0 Consensus size: 135
58622917 CTATTAGGTT
* * * * * *
58622927 GTGTTGTAAGATATAAATTGAAATTGTTCTCTTTTGGTAGTCACAATCCTTTCAAGGTTTTGCTA
1 GTGTTGTAAGATACAAATTGAAATTGTTCACTTTTGGTAGACACAAGCCCTTCAAAGTTTTGCTA
* * ** * *
58622992 CCCTTTCATGCACCTTTATAGATTTGAACCCGAATATTCACACACAAAGTAGTGTACTCTACAAA
66 CCCTTTCATGCAACTTCATAGATTCAAACACGAATATTCACACACAAAGAAGTGTACTCTACAAA
58623057 ATGTC
131 ATGTC
58623062 GTGTTGTAAGATACAAATTGAAATTGTTCACTTTTGGTAGACACAAGCCCTT-AACAGTTTTGCT
1 GTGTTGTAAGATACAAATTGAAATTGTTCACTTTTGGTAGACACAAGCCCTTCAA-AGTTTTGCT
** * * * * *
58623126 A-CCTTATGGTGCAACTTCAGT-GATTCAAACACGTATCTTCACACACGAAGAAGTGTACTTTGC
65 ACCCTT-TCATGCAACTTCA-TAGATTCAAACACGAATATTCACACACAAAGAAGTGTACTCTAC
58623189 AAAAT
128 AAAAT
58623194 AGATATCAAT
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
134 6 0.05
135 103 0.94
136 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (135 bp):
GTGTTGTAAGATACAAATTGAAATTGTTCACTTTTGGTAGACACAAGCCCTTCAAAGTTTTGCTA
CCCTTTCATGCAACTTCATAGATTCAAACACGAATATTCACACACAAAGAAGTGTACTCTACAAA
ATGTC
Found at i:58627062 original size:20 final size:20
Alignment explanation
Indices: 58627037--58627075 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
58627027 GTTTTTACAT
58627037 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
58627057 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
58627076 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:58627844 original size:108 final size:108
Alignment explanation
Indices: 58627624--58627842 Score: 284
Period size: 108 Copynumber: 2.0 Consensus size: 108
58627614 TACTTTGAGG
* * *
58627624 TTTTAAGAGGATATTTGACTATTTGGTCAAACGAAAAATCGAAACACAGCACGTTAGGGAACTCT
1 TTTTAAAAGGATACTCGACTATTTGGTCAAACGAAAAATCGAAACACAGCACGTTAGGGAACTCT
* **
58627689 TTCTCGAATTTTCTAAATGTAAAATATTGTCTTTATTTTAAAA
66 TTCTCGAAATTTCTAAATACAAAATATTGTCTTTATTTTAAAA
* * * *
58627732 TTTTAAAAGGATACTCGGCTATTTGGTCAAACGAGAAGA-CGAAACCCAGCACGTTAGGGCACGT
1 TTTTAAAAGGATACTCGACTATTTGGTCAAACGA-AAAATCGAAACACAGCACGTTAGGGAAC-T
*
58627796 -TTTCTC-AAATTTCTAAATACAAAATATTG-CTTTTATTTTGAAA
64 CTTTCTCGAAATTTCTAAATACAAAATATTGTC-TTTATTTTAAAA
58627839 TTTT
1 TTTT
58627843 TATTTCTTTG
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
106 1 0.01
107 35 0.36
108 57 0.59
109 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (108 bp):
TTTTAAAAGGATACTCGACTATTTGGTCAAACGAAAAATCGAAACACAGCACGTTAGGGAACTCT
TTCTCGAAATTTCTAAATACAAAATATTGTCTTTATTTTAAAA
Found at i:58634945 original size:26 final size:27
Alignment explanation
Indices: 58634916--58634970 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
58634906 ACAATTAATT
*
58634916 AAAATATAAAAGAT-TAAAAAT-TAAAA
1 AAAATA-AAAAAATCTAAAAATCTAAAA
*
58634942 AAAATAAAAAAATCTGAAAATCTAAAA
1 AAAATAAAAAAATCTAAAAATCTAAAA
58634969 AA
1 AA
58634971 TACCATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.24
26 12 0.48
27 7 0.28
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (27 bp):
AAAATAAAAAAATCTAAAAATCTAAAA
Found at i:58637048 original size:17 final size:17
Alignment explanation
Indices: 58637026--58637078 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
58637016 TTAGAATCTT
58637026 TTTAAAATTATTATAAA
1 TTTAAAATTATTATAAA
** *
58637043 TTTAAAAAAAATATAAA
1 TTTAAAATTATTATAAA
*
58637060 TTTAAGAATTTTTATAAA
1 TTTAA-AATTATTATAAA
58637078 T
1 T
58637079 AATTTGAATT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTTAAAATTATTATAAA
Found at i:58637203 original size:9 final size:9
Alignment explanation
Indices: 58637189--58637218 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
58637179 ATATCAATCT
58637189 ATTATTCAA
1 ATTATTCAA
58637198 ATTATTCAA
1 ATTATTCAA
*
58637207 GTTATTCAA
1 ATTATTCAA
58637216 ATT
1 ATT
58637219 GTAAAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (9 bp):
ATTATTCAA
Found at i:58638003 original size:33 final size:33
Alignment explanation
Indices: 58637966--58638033 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
58637956 ACTGCTGTAA
58637966 GTTTTGCTTTTCACAATCTCCATCTCCATCTCT
1 GTTTTGCTTTTCACAATCTCCATCTCCATCTCT
58637999 GTTTTGCTTTTCACAATCTCCATCTCCATCTCT
1 GTTTTGCTTTTCACAATCTCCATCTCCATCTCT
58638032 GT
1 GT
58638034 CTCAAGCTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.15, C:0.32, G:0.07, T:0.46
Consensus pattern (33 bp):
GTTTTGCTTTTCACAATCTCCATCTCCATCTCT
Found at i:58645075 original size:26 final size:28
Alignment explanation
Indices: 58645021--58645081 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
58645011 TATTATCAAG
* *
58645021 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
58645049 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
58645075 AATTATA
1 AATTATA
58645082 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:58645230 original size:66 final size:64
Alignment explanation
Indices: 58645160--58645358 Score: 186
Period size: 66 Copynumber: 3.2 Consensus size: 64
58645150 AAATATATTT
58645160 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
58645225 G
64 G
* * * * * **
58645226 AATATTAATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
58645280 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
58645345 G
64 G
*
58645346 AATATTGATTATT
1 AATATTAATTATT
58645359 AAGAATTTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
54 14 0.14
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 27 0.27
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:58645246 original size:120 final size:120
Alignment explanation
Indices: 58645122--58645419 Score: 517
Period size: 120 Copynumber: 2.5 Consensus size: 120
58645112 AATTATTTTA
* * * *
58645122 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
58645186 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
58645242 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
*
58645307 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
58645362 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
58645420 ATGATTAAAT
Statistics
Matches: 169, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
120 162 0.96
121 7 0.04
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:58645262 original size:61 final size:61
Alignment explanation
Indices: 58645195--58645382 Score: 192
Period size: 61 Copynumber: 3.1 Consensus size: 61
58645185 TTATAGTATC
58645195 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
58645256 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
58645314 C
61 T
*
58645315 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
58645376 ATATATT
1 ATATATT
58645383 TTAATTATAA
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 11 0.11
58 8 0.08
59 18 0.19
60 16 0.17
61 25 0.26
62 7 0.07
63 11 0.11
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:58645282 original size:15 final size:15
Alignment explanation
Indices: 58645247--58645298 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
58645237 TTAAGAATTT
*
58645247 TATTAAATTAT-ATA
1 TATTTAATTATAATA
58645261 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
58645275 TATTTAATAATAAT-
1 TATTTAATTATAATA
58645289 TATGTTAATT
1 TAT-TTAATT
58645299 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:58645397 original size:16 final size:16
Alignment explanation
Indices: 58645376--58645417 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
58645366 TTATTAAATT
*
58645376 ATATATTTTAATTATA
1 ATATATTTTAATAATA
58645392 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
58645407 AT-TATGTTTAA
1 ATATAT-TTTAA
58645418 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:58645402 original size:15 final size:15
Alignment explanation
Indices: 58645367--58645408 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
58645357 TTAAGAATTT
*
58645367 TATTAAATTAT-ATA
1 TATTTAATTATAATA
58645381 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
58645395 TATTTAATAATAAT
1 TATTTAATTATAAT
58645409 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:58645652 original size:16 final size:16
Alignment explanation
Indices: 58645631--58645679 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
58645621 TTGATTTGTT
*
58645631 ATTACGCCTCTATTTC
1 ATTACGCCTCTATTCC
*
58645647 ATTACGCCTCTAATCC
1 ATTACGCCTCTATTCC
58645663 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
58645679 A
1 A
58645680 ATACAGCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.22, C:0.35, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:58646551 original size:15 final size:15
Alignment explanation
Indices: 58646516--58646569 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
58646506 ATTCGGAGGA
* *
58646516 GGAGAGGAGGAGGAG
1 GGAGAGGAAGAGAAG
*
58646531 GAAGAGGAAGAGAAG
1 GGAGAGGAAGAGAAG
58646546 GGAGAGAGAAGA-AAG
1 GGAGAG-GAAGAGAAG
*
58646561 GGAAAGGAA
1 GGAGAGGAA
58646570 AAGGAGGAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
14 3 0.09
15 25 0.76
16 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (15 bp):
GGAGAGGAAGAGAAG
Found at i:58646584 original size:27 final size:26
Alignment explanation
Indices: 58646546--58646613 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
58646536 GGAAGAGAAG
* *
58646546 GGAGAGAG-AAGAAAGGGAAAGGAAAA
1 GGAGAAAGAAAGAAA-GGAAAAGAAAA
*
58646572 GGAGGAAGAAAGAGAAGGAAAAGAAAA
1 GGAGAAAGAAAGA-AAGGAAAAGAAAA
58646599 GGAGAAAGAAAGAAA
1 GGAGAAAGAAAGAAA
58646614 AAGAGAGAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.22
27 26 0.72
28 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (26 bp):
GGAGAAAGAAAGAAAGGAAAAGAAAA
Found at i:58646660 original size:20 final size:20
Alignment explanation
Indices: 58646634--58646680 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
58646624 CGAGGAGAGG
58646634 AAAAGAAA-GAAGAGAAAAGA
1 AAAAGAAAGGAA-AGAAAAGA
* *
58646654 GAAAGAAAGGAAAGCAAAGA
1 AAAAGAAAGGAAAGAAAAGA
58646674 AAAAGAA
1 AAAAGAA
58646681 GGATAAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.72, C:0.02, G:0.26, T:0.00
Consensus pattern (20 bp):
AAAAGAAAGGAAAGAAAAGA
Found at i:58646666 original size:16 final size:16
Alignment explanation
Indices: 58646580--58646666 Score: 59
Period size: 16 Copynumber: 5.1 Consensus size: 16
58646570 AAGGAGGAAG
* *
58646580 AAAGAGAAGGAAAAGA
1 AAAGAGAAAGAAAGGA
*
58646596 AAAGGAGAAAGAAAGAA
1 AAA-GAGAAAGAAAGGA
* *
58646613 AAAGAGAGAGACGAGGA
1 AAAGAGAAAGA-AAGGA
*
58646630 GAGGAAAAGAAAG-AAGAGA
1 -A--AAGAGAAAGAAAG-GA
58646649 AAAGAGAAAGAAAGGA
1 AAAGAGAAAGAAAGGA
58646665 AA
1 AA
58646667 GCAAAGAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
16 22 0.41
17 19 0.35
18 4 0.07
19 2 0.04
20 7 0.13
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.00
Consensus pattern (16 bp):
AAAGAGAAAGAAAGGA
Found at i:58650084 original size:33 final size:33
Alignment explanation
Indices: 58650046--58650113 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
58650036 TCTAACCCTC
58650046 AATCTTAAATCCAAAAAATAAAATGTAGCTTTG
1 AATCTTAAATCCAAAAAATAAAATGTAGCTTTG
58650079 AATCTTAAATCCAAAAAATAAAATGTAGCTTTG
1 AATCTTAAATCCAAAAAATAAAATGTAGCTTTG
58650112 AA
1 AA
58650114 CCTAAAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (33 bp):
AATCTTAAATCCAAAAAATAAAATGTAGCTTTG
Found at i:58650950 original size:105 final size:105
Alignment explanation
Indices: 58650805--58651041 Score: 280
Period size: 103 Copynumber: 2.2 Consensus size: 105
58650795 TTGTATACAG
* * *
58650805 GAAAAAAAAAGAAAAAAAATTTGGGTGCTGGCCTATCAATGGCCGACACCACTTTTACGAGAAAT
1 GAAAAAAATA-AAAAAAAATTTGGGTGCTGGCCTACCAATGGCCGACACCACCTTTACG-GAAA-
* *
58650870 TTTTTTTTACATTTTGGGGGGTCATTAGCAGGCACCAGTATAC
63 TTTTTTTTACATTTTGGGCGGTCATTAGCAGGCAACAGTATAC
* * * * * * *
58650913 G-AAAAAATAAAAAAAAATTTGGTTG-TGGCCTGCCAATGGCTGGCATCACCTTTATGTAAATTT
1 GAAAAAAATAAAAAAAAATTTGGGTGCTGGCCTACCAATGGCCGACACCACCTTTACGGAAATTT
* * * *
58650976 TTTTTACATTTTGGGCTGTCATTGGCCGGCAATAGTATAC
66 TTTTTACATTTTGGGCGGTCATTAGCAGGCAACAGTATAC
*
58651016 GAAAAAAATAAAAAAAAATTTTGGTG
1 GAAAAAAATAAAAAAAAATTTGGGTG
58651042 GTGCCGGCCA
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
103 38 0.35
104 25 0.23
105 24 0.22
106 15 0.14
107 7 0.06
108 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (105 bp):
GAAAAAAATAAAAAAAAATTTGGGTGCTGGCCTACCAATGGCCGACACCACCTTTACGGAAATTT
TTTTTACATTTTGGGCGGTCATTAGCAGGCAACAGTATAC
Found at i:58651366 original size:101 final size:103
Alignment explanation
Indices: 58651052--58651485 Score: 303
Period size: 109 Copynumber: 4.1 Consensus size: 103
58651042 GTGCCGGCCA
* * *
58651052 TTTATGTAAAAAAAAATTTACATTTTGGGCTGTCATTGGCCGGCACCAGTATACGAAAAAATAAA
1 TTTATGTAAAATAAAATTTACATTTTGGGCTATCATTGGACGGCACCAGTATACG-------AAA
* * *
58651117 AAATAAAAAATAAATTTTTTTTGGTAGTGGCCTGCTAATGGCCGGCA-CACC
59 AAAT-AAAAA-AAA-----TTTAGTGGTGGCCTGCCAATGGCCGGCACCACC
* **** * * * ***
58651168 TTTATGTAAATTTTTTTTTAACATTTTGAGCTGTTATTTTTCGGCACCAGTATACG-------AA
1 TTTATGTAAAATAAAATTT-ACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAAATAA
* *
58651226 AAAAAATTTTGATGGTGGCCTGCCAATGGCCAGCACCACC
65 AAAAAATTTAG-TGGTGGCCTGCCAATGGCCGGCACCACC
* * *
58651266 TTTATGTAAAA-AAAATTTACATTTTGGGGTGTCATTGGTCGGCACCAGTATACG-AAAAATAAA
1 TTTATGTAAAATAAAATTTACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAAATAAA
* *
58651329 AAAAATTTAGTGGTGGCCTGCCAATGGTCGGCGCCACC
66 AAAAATTTAGTGGTGGCCTGCCAATGGCCGGCACCACC
**** *
58651367 TTTATGTAAAATTTGTTTTTTTTTTATATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAA
1 TTTATGTAAAA------TAAAATTTACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAA
* * *
58651432 AATAAAAAAAAATTGGTGGTGGCCTACCAATGGCCGGCACCACC
60 AATAAAAAAAATTTAGTGGTGGCCTGCCAATGGCCGGCACCACC
*
58651476 TTTATATAAA
1 TTTATGTAAA
58651486 TTTTTTTTAC
Statistics
Matches: 258, Mismatches: 43, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
96 35 0.14
97 23 0.09
98 14 0.05
101 39 0.15
102 17 0.07
108 35 0.14
109 51 0.20
116 13 0.05
117 31 0.12
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (103 bp):
TTTATGTAAAATAAAATTTACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAAATAAA
AAAAATTTAGTGGTGGCCTGCCAATGGCCGGCACCACC
Found at i:58651439 original size:108 final size:106
Alignment explanation
Indices: 58651281--58651493 Score: 309
Period size: 109 Copynumber: 2.0 Consensus size: 106
58651271 GTAAAAAAAA
* * * *
58651281 TTTACATTTTGGGGTGTCATTGGTCGGCACCAGTATACGAAAAATAAAAAAAATTTAGTGGTGGC
1 TTTACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAATAAAAAAAAATTAGTGGTGGC
* * * *
58651346 CTGCCAATGGTCGGCGCCACCTTTATGTAAAATTTGTTTTTTT
66 CTACCAATGGCCGGCACCACCTTTATAT-AAATTT-TTTTTTT
* *
58651389 TTTATATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAAATAAAAAAAAATTGGTGGTGG
1 TTTACATTTTGGGCTATCATTGGACGGCACCAGTATACG-AAAAATAAAAAAAAATTAGTGGTGG
58651454 CCTACCAATGGCCGGCACCACCTTTATATAAATTTTTTTT
65 CCTACCAATGGCCGGCACCACCTTTATATAAATTTTTTTT
58651494 ACATTTCGGG
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
107 5 0.05
108 41 0.44
109 48 0.51
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (106 bp):
TTTACATTTTGGGCTATCATTGGACGGCACCAGTATACGAAAAATAAAAAAAAATTAGTGGTGGC
CTACCAATGGCCGGCACCACCTTTATATAAATTTTTTTTTT
Found at i:58653497 original size:357 final size:357
Alignment explanation
Indices: 58652842--58653913 Score: 2036
Period size: 357 Copynumber: 3.0 Consensus size: 357
58652832 GCGAAGCAAA
*
58652842 TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCATCATACAACGAGCTTCAAGGGTGGATAGCT
1 TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGCT
58652907 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
66 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
58652972 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
131 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
* *
58653037 GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGACAAATACATG
196 GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGGCAAATACACG
58653102 CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
261 CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
58653167 CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
326 CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
58653199 TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGCT
1 TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGCT
58653264 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
66 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
* *
58653329 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTATTTTAGATGTTCGAGCCGTGTGTTA
131 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
* * *
58653394 GGGCATTCCCTTATTGCAAGCCAATGGTGCAAGCAGACAAGACATGGTTGTATGGCAAATACACG
196 GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGGCAAATACACG
*
58653459 CAAATCCTCCTGATTGTTGTTGTACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
261 CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
*
58653524 CGTGGAGCGTGAGTACTTCAAGTCTTAGGAAT
326 CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
* *
58653556 TGGTGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGTT
1 TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGCT
58653621 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
66 GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
58653686 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
131 CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
58653751 GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGGCAAATACACG
196 GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGGCAAATACACG
58653816 CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
261 CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
58653881 CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
326 CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
58653913 T
1 T
58653914 TTTCTTCACA
Statistics
Matches: 696, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
357 696 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (357 bp):
TGGCGATGCGAGAGTTGTATGGTAATTGGAATGCGTCATACAACGAGCTTCAAGGGTGGATAGCT
GGAATGCAGGAGTATGTGTTGGGGACAGTGACTGATTTGCAAACACTACCGTATAAAAGACCTAA
CGGAGAGATACAACCGGGGAAACAAGTTTTTCACCGATTGTTTTGGATGTTCGAGCCGTGTGTTA
GGGCCTTCCCTTATTGCAAGCCAATGGTGCAAGCGGACAGGACATGGTTGTATGGCAAATACACG
CAAATCCTCCTGATTGTTGTTGCACAAGACGACAATCGAAATGTACTTCCAATCGCTTTCGCCAT
CGTGGAGCGTGAGTGCTTCAAGTCTTAGGAAT
Found at i:58655755 original size:52 final size:52
Alignment explanation
Indices: 58655686--58655786 Score: 159
Period size: 52 Copynumber: 1.9 Consensus size: 52
58655676 TTTTTCCTGT
* * *
58655686 TAATTTTTACTTAATTTAAAATTATTTTGTAAATATTTCTTTTATTTTTAAA
1 TAATTTTTAATTAATTTAAAATTATTCTGTAAAGATTTCTTTTATTTTTAAA
58655738 TAATTATTTAATT-ATTTAAAATTATTCTGTAAAGATTTCTTTTATTTTT
1 TAATT-TTTAATTAATTTAAAATTATTCTGTAAAGATTTCTTTTATTTTT
58655787 TCTGTTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 39 0.87
53 6 0.13
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (52 bp):
TAATTTTTAATTAATTTAAAATTATTCTGTAAAGATTTCTTTTATTTTTAAA
Found at i:58656733 original size:96 final size:94
Alignment explanation
Indices: 58656550--58656746 Score: 256
Period size: 96 Copynumber: 2.1 Consensus size: 94
58656540 AATTTTTTTA
* *****
58656550 TTTTTTTGTATACTGGTGTCGGTCAATGACAGCCTAAAATGTAAATTTTTTTTACATAAAGGTGG
1 TTTTTTTGTATACTGGTGTCGGTCAATGACAGCCCAAAATGTAAAAAAAATTTACATAAAGGTGG
*
58656615 TGCCGGCCATTGGCAAGTCACCACCAATT
66 TGCCGGCCATTGGCAAGCCACCACCAATT
58656644 TTTTTTTCGTATACTGGTG-CAGG-CTAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAG
1 TTTTTTT-GTATACTGGTGTC-GGTC-AATGACAGCCCAAAATGT-AAAAAAAATTTACATAAAG
*
58656707 GTGGTGCCGGTCATTGGC-AGACCACCACCAATT
62 GTGGTGCCGGCCATTGGCAAG-CCACCACCAATT
58656740 TTTTTTT
1 TTTTTTT
58656747 TTATTTTTTC
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
94 9 0.10
95 32 0.36
96 49 0.54
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (94 bp):
TTTTTTTGTATACTGGTGTCGGTCAATGACAGCCCAAAATGTAAAAAAAATTTACATAAAGGTGG
TGCCGGCCATTGGCAAGCCACCACCAATT
Found at i:58656763 original size:105 final size:106
Alignment explanation
Indices: 58656645--58656934 Score: 322
Period size: 105 Copynumber: 2.7 Consensus size: 106
58656635 CCACCAATTT
58656645 TTTTTTCGTATACTGGTGCAGGCTAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTG
1 TTTTTTCGTATACTGGTGCAGGC-AATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTG
* ***
58656710 GTGCCGGTCATTGGCAGACCACCACC-AATTTTTTTT-TTTA
65 GTGCCGGCCATTGGCAGACCACCACCAAATTTTTTTTAAAAA
* * **** *
58656750 TTTTTTCGTATACTGGTGCAGGGCAATGACAGTCAAAAATGT---AATTTTTTTACATAAATGTG
1 TTTTTTCGTATACTGGTGCA-GGCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTG
*
58656812 GTGCCGGCCATTGGCAGGCCACCACCAAAAATTTTTTTTAAAAA
65 GTGCCGGCCATTGGCAGACCACCACC--AAATTTTTTTTAAAAA
* * * *
58656856 TTTTTTCGTATATTGGTGCCGGCCAATGACA-CCCAAAAATGTAAAAAAAAAAATTCACGTAAAG
1 TTTTTTCGTATACTGGTGCAGG-CAATGACAGCCC-AAAATGT--AAAAAAAAATTTACATAAAG
58656920 GTGGTGCCGGCCATT
62 GTGGTGCCGGCCATT
58656935 AATAGGCCAA
Statistics
Matches: 150, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
102 39 0.26
105 49 0.33
106 37 0.25
111 25 0.17
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (106 bp):
TTTTTTCGTATACTGGTGCAGGCAATGACAGCCCAAAATGTAAAAAAAAATTTACATAAAGGTGG
TGCCGGCCATTGGCAGACCACCACCAAATTTTTTTTAAAAA
Found at i:58659158 original size:22 final size:22
Alignment explanation
Indices: 58659071--58659162 Score: 64
Period size: 22 Copynumber: 4.1 Consensus size: 22
58659061 CATTCAAGAC
* **
58659071 TTTGTTTTTAGGAGGTGGGTTT
1 TTTGTTTTTTGGAGGTGTTTTT
* *
58659093 TTGGTTTTTTGGAGAAG-GATTGTTC
1 TTTGTTTTTTGGAG--GTG-TT-TTT
*
58659118 TTTG--TTTTGGAGGAAGTTTTT
1 TTTGTTTTTTGGAGG-TGTTTTT
58659139 TTTGTTTTTTGGAGGTGTTTTT
1 TTTGTTTTTTGGAGGTGTTTTT
58659161 TT
1 TT
58659163 GTAAAAAAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
21 7 0.13
22 22 0.41
23 19 0.35
24 1 0.02
25 5 0.09
ACGTcount: A:0.11, C:0.01, G:0.30, T:0.58
Consensus pattern (22 bp):
TTTGTTTTTTGGAGGTGTTTTT
Found at i:58659506 original size:3 final size:3
Alignment explanation
Indices: 58659492--58659576 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
58659482 GAGCTTTGTT
* *
58659492 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
58659536 TT- TCTCA TGTA TATA TTA TTT TTA -TA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
58659577 ATATGCCCTC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
2 8 0.12
3 50 0.76
4 6 0.09
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:58659527 original size:24 final size:23
Alignment explanation
Indices: 58659495--58659576 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
58659485 CTTTGTTTTA
*
58659495 TTATTTTATTATTTTTACTATTAT
1 TTATATTATTATTTTTA-TATTAT
* *
58659519 TTATATTATTATTATTATTTCTCAT
1 TTATATTATTATTTTTATAT-T-AT
*
58659544 GTATA-TATTATTTTTATATTATT
1 TTATATTATTATTTTTATATTA-T
58659567 ATTATATTAT
1 -TTATATTAT
58659577 ATATGCCCTC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 32 0.70
25 9 0.20
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (23 bp):
TTATATTATTATTTTTATATTAT
Found at i:58659563 original size:11 final size:11
Alignment explanation
Indices: 58659492--58659576 Score: 64
Period size: 11 Copynumber: 7.4 Consensus size: 11
58659482 GAGCTTTGTT
58659492 TTATTATTT-TA
1 TTATT-TTTATA
58659503 TTATTTTTACTA
1 TTATTTTTA-TA
*
58659515 TTATTTATATTA
1 TTATTTTTA-TA
* *
58659527 TTATTATTATT
1 TTATTTTTATA
* *
58659538 TCTCATGTATATA
1 T-T-ATTTTTATA
58659551 TTATTTTTATA
1 TTATTTTTATA
*
58659562 TTATTATTATA
1 TTATTTTTATA
58659573 TTAT
1 TTAT
58659577 ATATGCCCTC
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
10 3 0.05
11 28 0.48
12 21 0.36
13 6 0.10
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:58659816 original size:16 final size:17
Alignment explanation
Indices: 58659794--58659836 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
58659784 ATATATTAGT
*
58659794 GTATATTTTTATGTATA
1 GTATATTTTTATATATA
58659811 -TATA-TTTTATATATA
1 GTATATTTTTATATATA
58659826 GTATTATTTTT
1 GTA-TATTTTT
58659837 TATTACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 10 0.45
16 6 0.27
17 2 0.09
18 4 0.18
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (17 bp):
GTATATTTTTATATATA
Found at i:58665737 original size:27 final size:27
Alignment explanation
Indices: 58665706--58665883 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
58665696 TAAATTGTAC
58665706 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58665733 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58665759 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
58665787 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58665815 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
58665842 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58665869 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58665884 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58665821 original size:82 final size:81
Alignment explanation
Indices: 58665707--58665862 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
58665697 AAATTGTACA
* * *
58665707 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
58665771 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58665788 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
58665853 TGCGAGTTGA
65 TGCGAATTGA
58665863 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58665874 original size:82 final size:81
Alignment explanation
Indices: 58665703--58665883 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
58665693 GATTAAATTG
* * *
58665703 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58665768 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58665784 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58665848 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58665866 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58665884 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58674824 original size:44 final size:44
Alignment explanation
Indices: 58674647--58675224 Score: 416
Period size: 44 Copynumber: 13.1 Consensus size: 44
58674637 TCATTAAAGT
* * * *
58674647 AGATATTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * ** * * *
58674691 AGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAGGAT-GC
1 AGATCTTGTCTTCCTATATTG-GCGTGAAGTAGATCGAAGATAGC
* * * * *
58674734 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * *
58674779 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * * *
58674823 AGATCCTATCTTTCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * *
58674866 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* *
58674911 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * ** * * *
58674955 AGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAATAT-GC
1 AGATCTTGTCTTCCTATATTG-GCGTGAAGTAGATCGAAGATAGC
* * * * *
58674998 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* *
58675043 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGC
1 AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
* * * ** * *
58675087 AGGTCCTATCTTCCTATATTGATAG-GAAGTCGATCCAAGAT-GC
1 AGATCTTGTCTTCCTATATTG-GCGTGAAGTAGATCGAAGATAGC
* * * * * *
58675130 AGATCTTATCTTCCCATACTGGTGGTGAAGTAGATTGAAGATTGC
1 AGATCTTGTCTTCCTATATTGG-CGTGAAGTAGATCGAAGATAGC
* * * * * *
58675175 AGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGC
1 AGATCTTGTCTTCCTATA-TTGGC-GTGAAGTAGATCGAAGATAGC
58675221 AGAT
1 AGAT
58675225 TTTACCTTCC
Statistics
Matches: 406, Mismatches: 111, Indels: 32
0.74 0.20 0.06
Matches are distributed among these distances:
43 82 0.20
44 218 0.54
45 83 0.20
46 23 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
AGATCTTGTCTTCCTATATTGGCGTGAAGTAGATCGAAGATAGC
Found at i:58674889 original size:132 final size:132
Alignment explanation
Indices: 58674642--58675222 Score: 928
Period size: 132 Copynumber: 4.4 Consensus size: 132
58674632 TGAAGTCATT
* * *
58674642 AAAGTAGATATTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
58674707 TATTGATAGGAAGTGGATCCAGGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
58674772 AG
131 AG
* * *
58674774 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
58674839 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
58674904 AG
131 AG
58674906 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
58674971 TATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
58675036 AG
131 AG
58675038 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * * * * *
58675103 TATTGATAGGAAGTCGATCCAAGATGCAGATCTTATCTTCCCATACTGGTGGTGAAGTAGATTGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
58675168 AG
131 AG
** * * * * * *
58675170 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAG
1 AAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGATAGCAG
58675223 ATTTTACCTT
Statistics
Matches: 417, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
132 393 0.94
133 5 0.01
134 19 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:58675301 original size:134 final size:134
Alignment explanation
Indices: 58675160--58675732 Score: 984
Period size: 134 Copynumber: 4.3 Consensus size: 134
58675150 GGTGGTGAAG
58675160 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* * * *
58675225 TTTACCTTCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
58675290 GGAA
131 GGAA
* *
58675294 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAAAA
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
58675359 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
58675424 GGAA
131 GGAA
* * *
58675428 TAGATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
* *
58675493 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAGT
66 TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
58675558 GGAA
131 GGAA
* *
58675562 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGAT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
*
58675627 TTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
66 TTTACCTCCC--TGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCA
58675692 GTGGAA
129 GTGGAA
* *
58675698 TAGATTGAAGATTGCAGATCCTGCCTTCCTATATT
1 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATT
58675733 GGTAGGAAGT
Statistics
Matches: 419, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
134 328 0.78
136 91 0.22
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
TTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGT
GGAA
Found at i:58675332 original size:46 final size:46
Alignment explanation
Indices: 58675272--58675717 Score: 203
Period size: 46 Copynumber: 9.9 Consensus size: 46
58675262 ATAATTCTAT
* *
58675272 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * ** * *
58675318 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAAAAT-TTAC
1 CTCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATTGC-AGATCTTAC
** * * ** * * *
58675364 CTCCCTG-A-C-CACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* *
58675406 CTCCCTGTATCTGGCAGTGGAATAGATTGAATATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
58675452 CTTCCTGTAT-TCGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATCT-GGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
* * * ** * * *
58675498 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* *
58675540 CTCACTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
58675586 CTTCCTGTAT-TAGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATCT-GGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
* * * ** * * *
58675632 CTCCCTGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGT-ATCTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
58675676 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATC
58675718 CTGCCTTCCT
Statistics
Matches: 277, Mismatches: 93, Indels: 59
0.65 0.22 0.14
Matches are distributed among these distances:
40 2 0.01
41 4 0.01
42 19 0.07
43 25 0.09
44 20 0.07
45 71 0.26
46 120 0.43
47 16 0.06
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (46 bp):
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:58675947 original size:40 final size:40
Alignment explanation
Indices: 58675895--58676046 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 40
58675885 AAGATTACAA
* *
58675895 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*** *
58675935 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG
* * *
58675976 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
58676017 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
58676047 CTAAAAACAC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 58 0.62
41 4 0.04
42 31 0.33
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:58675989 original size:82 final size:83
Alignment explanation
Indices: 58675893--58676062 Score: 261
Period size: 82 Copynumber: 2.1 Consensus size: 83
58675883 TGAAGATTAC
* * * *
58675893 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
58675958 GAGCAGA-TAAAACCACA
66 GAGCAGACTAAAAACACA
* * *
58675975 GATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
58676040 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
58676058 AATCT
1 AATCT
58676063 CATCCCCATG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 65 0.83
83 13 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:58675999 original size:42 final size:42
Alignment explanation
Indices: 58675894--58676062 Score: 157
Period size: 40 Copynumber: 4.1 Consensus size: 42
58675884 GAAGATTACA
* *** **
58675894 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
*
58675935 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* * * *** *
58675976 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* *
58676017 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TAAAAACACAG
58676059 ATCT
1 ATCT
58676063 CATCCCCATG
Statistics
Matches: 101, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 58 0.57
41 8 0.08
42 32 0.32
43 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
Found at i:58676568 original size:23 final size:21
Alignment explanation
Indices: 58676542--58676589 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
58676532 GTTTTTGGTT
58676542 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGAAGG-TT-TTCTTTG
* *
58676565 TTTTGGAGGAGGTTTTTTTTG
1 TTTTGGAGAAGGTTTTCTTTG
58676586 TTTT
1 TTTT
58676590 TTGGAGGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 2 0.09
23 11 0.48
ACGTcount: A:0.12, C:0.02, G:0.29, T:0.56
Consensus pattern (21 bp):
TTTTGGAGAAGGTTTTCTTTG
Found at i:58676587 original size:21 final size:21
Alignment explanation
Indices: 58676542--58676607 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
58676532 GTTTTTGGTT
* *
58676542 TTTTGGAGAAGGATTGTTCTTTG
1 TTTTGGAGGAGG-TT-TTTTTTG
58676565 TTTTGGAGGAGGTTTTTTTTG
1 TTTTGGAGGAGGTTTTTTTTG
**
58676586 TTTT-TTGGAGGTGTTTTTTTG
1 TTTTGGAGGAGGT-TTTTTTTG
58676607 T
1 T
58676608 AAAAAAGGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.16
21 19 0.50
22 2 0.05
23 11 0.29
ACGTcount: A:0.11, C:0.02, G:0.30, T:0.58
Consensus pattern (21 bp):
TTTTGGAGGAGGTTTTTTTTG
Found at i:58676591 original size:23 final size:23
Alignment explanation
Indices: 58676514--58676605 Score: 75
Period size: 22 Copynumber: 4.1 Consensus size: 23
58676504 CATTCAAGAC
* * *
58676514 TTTGTTTTTAGGAGGTGG-GTTT
1 TTTGTTTTTTGGAGGAGGTTTTT
* * *
58676536 TTGGTTTTTTGGAGAAGGATTGTTC
1 TTTGTTTTTTGGAGGAGG-TT-TTT
58676561 TTTG--TTTTGGAGGAGGTTTTT
1 TTTGTTTTTTGGAGGAGGTTTTT
*
58676582 TTTGTTTTTTGGAGG-TGTTTTT
1 TTTGTTTTTTGGAGGAGGTTTTT
58676604 TT
1 TT
58676606 GTAAAAAAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
21 6 0.11
22 24 0.44
23 20 0.36
25 5 0.09
ACGTcount: A:0.10, C:0.01, G:0.32, T:0.58
Consensus pattern (23 bp):
TTTGTTTTTTGGAGGAGGTTTTT
Found at i:58676949 original size:3 final size:3
Alignment explanation
Indices: 58676935--58677023 Score: 66
Period size: 3 Copynumber: 30.3 Consensus size: 3
58676925 GAGCTTTGTT
* *
58676935 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
58676979 TTA TT- TCTCA TGTA TATA TTA TT- TT- TTA -TA TTA TTA TTA -TA TTA
1 TTA TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58677023 T
1 T
58677024 ATATGCCCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
2 12 0.17
3 51 0.72
4 6 0.08
5 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:58677025 original size:30 final size:30
Alignment explanation
Indices: 58676935--58677027 Score: 75
Period size: 30 Copynumber: 3.0 Consensus size: 30
58676925 GAGCTTTGTT
* * *
58676935 TTATTATTT-TATTATTTTTACTATTATTTA
1 TTATTTTTTATATTATTATTA-TATTATATA
* *
58676965 -TA-TTATTATTATTATTATTTCTCATGTATATA
1 TTATTTTTTA-TATTATTA-TTAT-AT-TATATA
58676997 TTATTTTTTATATTATTATTATATTATATA
1 TTATTTTTTATATTATTATTATATTATATA
58677027 T
1 T
58677028 GCCCTCTCCA
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
28 3 0.06
29 2 0.04
30 15 0.31
31 6 0.12
32 8 0.16
33 10 0.20
34 5 0.10
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (30 bp):
TTATTTTTTATATTATTATTATATTATATA
Found at i:58677265 original size:18 final size:19
Alignment explanation
Indices: 58677229--58677285 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
58677219 ATTATTACTA
*
58677229 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
58677249 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
58677266 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
58677284 TT
1 TT
58677286 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:58677387 original size:12 final size:12
Alignment explanation
Indices: 58677370--58677399 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
58677360 GTATTTCTAT
58677370 TATATACATATA
1 TATATACATATA
*
58677382 TATATACATTTA
1 TATATACATATA
58677394 TATATA
1 TATATA
58677400 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATATACATATA
Found at i:58678513 original size:23 final size:23
Alignment explanation
Indices: 58678487--58678532 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
58678477 TTTTATAACT
58678487 TTTTTTATTTACCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
*
58678510 TTTTTTATTTATCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
58678533 AAAAAACTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTTTATTTACCAAAATATATA
Found at i:58678665 original size:4 final size:4
Alignment explanation
Indices: 58678656--58678707 Score: 54
Period size: 4 Copynumber: 13.0 Consensus size: 4
58678646 GAAGGAGAGG
* *
58678656 GAAA GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA G-AA -AAA GAAG GAAA
1 GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
58678704 GAAA
1 GAAA
58678708 AGGAAAGGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
3 4 0.10
4 31 0.77
5 4 0.10
6 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:58678685 original size:18 final size:18
Alignment explanation
Indices: 58678664--58678718 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
58678654 GGGAAAGAAA
58678664 GAAAGAAAGAAAGGAGAG
1 GAAAGAAAGAAAGGAGAG
*
58678682 GAAAGAAAGAAA-AAGAAG
1 GAAAGAAAGAAAGGAG-AG
58678700 GAAAGAAAAGGAAAGGAGA
1 GAAAG-AAA-GAAAGGAGA
58678719 AGAGAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 2 0.06
18 19 0.61
19 3 0.10
20 5 0.16
21 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGAAAGGAGAG
Found at i:58678704 original size:32 final size:31
Alignment explanation
Indices: 58678661--58678764 Score: 95
Period size: 33 Copynumber: 3.2 Consensus size: 31
58678651 AGAGGGAAAG
*
58678661 AAAGAAAGAAAGAAAGGAGAGGAAAGAAAGAA
1 AAAGAAGGAAAGAAAGGAGAGGAAAGAAA-AA
*
58678693 AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
1 AAAGAAGGAAAG-AAAGGAGAGGA-AAGA-AAAA
* *
58678727 AAA-AAGAAGAAGAAGAGG-GAAGAAAGGAAAAA
1 AAAGAAGGA-AAGAA-AGGAGAGGAAA-GAAAAA
58678759 AAAGAA
1 AAAGAA
58678765 AAAAAATGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
32 20 0.33
33 23 0.38
34 15 0.25
35 2 0.03
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (31 bp):
AAAGAAGGAAAGAAAGGAGAGGAAAGAAAAA
Found at i:58678704 original size:36 final size:36
Alignment explanation
Indices: 58678657--58678735 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
58678647 AAGGAGAGGG
* *
58678657 AAAGAAAGAAAG-AAA-GAAAGGAGAGGAAAGAAAGAA
1 AAAGAAGGAAAGAAAAGGAAAGGAGA--AAAGAAAAAA
*
58678693 AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
1 AAAGAAGGAAAGAAAAGGAAAGGAGAAAAGAAAAAA
58678729 AAAGAAG
1 AAAGAAG
58678736 AAGAAGAGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 26 0.68
37 3 0.08
38 9 0.24
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (36 bp):
AAAGAAGGAAAGAAAAGGAAAGGAGAAAAGAAAAAA
Found at i:58678740 original size:21 final size:21
Alignment explanation
Indices: 58678687--58678743 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
58678677 GAGAGGAAAG
* *
58678687 AAAGAAAAAGAAG-GAAAGAA
1 AAAGAAGAAGAAGAGAAAAAA
* *
58678707 AAGGAAAGGAGAAGAGAAAAAA
1 AAAG-AAGAAGAAGAGAAAAAA
58678729 AAAGAAGAAGAAGAG
1 AAAGAAGAAGAAGAG
58678744 GGAAGAAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 3 0.10
21 17 0.59
22 9 0.31
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAGAAGAGAAAAAA
Found at i:58678757 original size:31 final size:34
Alignment explanation
Indices: 58678661--58678761 Score: 104
Period size: 32 Copynumber: 3.1 Consensus size: 34
58678651 AGAGGGAAAG
* * *
58678661 AAAGAAAGAAAG-AAAGGAGAGGAAA-GAAAGAA
1 AAAGAAGGAAAGAAAAGGAAAGGAAAGGAAAAAA
58678693 AAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
1 AAAGAAGGAAAGAAAAGGAAAGGA-AAG-GAAAAAA
* *
58678729 AAAGAA-G-AAGAAGAGGGAA-GAAAGGAAAAAA
1 AAAGAAGGAAAGAAAAGGAAAGGAAAGGAAAAAA
58678760 AA
1 AA
58678762 GAAAAAAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
31 9 0.15
32 14 0.23
33 12 0.20
34 12 0.20
35 1 0.02
36 12 0.20
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (34 bp):
AAAGAAGGAAAGAAAAGGAAAGGAAAGGAAAAAA
Found at i:58679007 original size:21 final size:21
Alignment explanation
Indices: 58678981--58679023 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
58678971 ATTATAACTT
58678981 TTTTTTAGTTACAAAAAAATA
1 TTTTTTAGTTACAAAAAAATA
* * *
58679002 TTTTTTATTTACCAAAATATA
1 TTTTTTAGTTACAAAAAAATA
58679023 T
1 T
58679024 AAAAAACCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTTTTAGTTACAAAAAAATA
Found at i:58679291 original size:19 final size:21
Alignment explanation
Indices: 58679253--58679291 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
58679243 AATAATTGAT
*
58679253 TATATTTTTGTTATTATTTTG
1 TATATTTTTGTTAATATTTTG
58679274 TATA-TTTTG-TAATATTTT
1 TATATTTTTGTTAATATTTT
58679292 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (21 bp):
TATATTTTTGTTAATATTTTG
Found at i:58682702 original size:9 final size:9
Alignment explanation
Indices: 58682688--58682721 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
58682678 TTTGGTTAAA
58682688 AATTACCCG
1 AATTACCCG
58682697 AATTACCCG
1 AATTACCCG
*
58682706 AATTAACCG
1 AATTACCCG
58682715 AATTACC
1 AATTACC
58682722 GAAAAATACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:58683811 original size:111 final size:106
Alignment explanation
Indices: 58683502--58683973 Score: 482
Period size: 108 Copynumber: 4.4 Consensus size: 106
58683492 AAAAATTTTT
* * * ** *** * *
58683502 TTTTTTTCATGTCAGAGTCAGATATAAATATACG-AAAAAAGGAAAAA-AAATTTGGGTGCCGAC
1 TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAAAATTAAAAATTTTTTTGGGTGCTGGC
* * * *
58683565 CTATCAATGGCCGGCACCTAGTACAATTTTTAAAAAAAAAATTTAC
66 CTGTCAATGGCCGGCACCCAGTACAA--ATT--AAAAAAAA-TTCC
* * * * * *
58683611 TTTTTTT-GTGTCAGAGTCAGATATAAATATACGAAAAAAATAAAAAAATATTTTGGATGCTGGC
1 TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAAAATTAAAAATTTTTTTGGGTGCTGGC
* *** *
58683675 CTGTCAATGGCCGGCACCTAGTACAAATTAAAAATTTTTTTCTTT
66 CTGTCAATGGCCGGCACCCAGTACAAATTAAAAA--AAATTC--C
*
58683720 TTTTTTTCGTGTTAGAATCATATATAAATATACGAAAAAAATTAAAAATTTTTTTTGGGTGCTGG
1 TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAAAATTAAAAA-TTTTTTTGGGTGCTGG
*
58683785 CCTGTCAATGGCCGGCACCCAATACAAATTAAAAAAAATTCC
65 CCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAATTCC
*
58683827 TTTTTTTCGTGTTCGAATCAGATATAAATATACGAAAAAAATTTTAAAAATTTTTTTGGGTGCTG
1 TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAAAA--TTAAAAATTTTTTTGGGTGCTG
* * * *
58683892 GCCTATTAATGGCCGGCACCCAGTACAATTTAAAAAAAATTCT
64 GCCTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAATTCC
* * * * *
58683935 TTTTTTTTGTGTCAGAGTTAGATATAAATATATGAAAAA
1 TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAA
58683974 TATGCGCTAT
Statistics
Matches: 312, Mismatches: 41, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
106 5 0.02
107 41 0.13
108 113 0.36
109 35 0.11
110 72 0.23
111 46 0.15
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (106 bp):
TTTTTTTCGTGTTAGAATCAGATATAAATATACGAAAAAAATTAAAAATTTTTTTGGGTGCTGGC
CTGTCAATGGCCGGCACCCAGTACAAATTAAAAAAAATTCC
Found at i:58686272 original size:18 final size:17
Alignment explanation
Indices: 58686241--58686274 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
58686231 TTATGTAAAT
58686241 ATTTTTTTTATTTTTAC
1 ATTTTTTTTATTTTTAC
*
58686258 ATTTTTCTTTTTTTTTA
1 ATTTTT-TTTATTTTTA
58686275 ATATTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
ATTTTTTTTATTTTTAC
Found at i:58686878 original size:96 final size:97
Alignment explanation
Indices: 58686779--58687172 Score: 313
Period size: 96 Copynumber: 3.9 Consensus size: 97
58686769 TTTTTTAAAT
* * *
58686779 TTTTTTCGTATATTTATATCTGATTCTGATACGAAAAAAAGAAAATTTTTTTAATTTGTACTGGG
1 TTTTTTCGTATATTTATATCTGACTCTGATACGAAAAAAAGAAATTTTTTTTAAATTGTACTGGG
**
58686844 TGCCGGCCATTGGCAGGCCAACACCTAAATTTTTTTAA
66 TGCCGGCCATTAACAGGCCAACACCTAAA-----TT-A
* * * * *
58686882 TTTATTTTGTATATTTATATCTGATTCTG--AC------ACGAATTTTTTTTTAATTTGTACTGG
1 TTT-TTTCGTATATTTATATCTGACTCTGATACGAAAAAAAGAAATTTTTTTTAAATTGTACTGG
* * *
58686939 GTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTA
65 GTGCCGGCCATTAACAGGCCAACA-CCTAAA------TTA
* *
58686979 TTTTTTTGTATATTTATATCTGACTCTGACACGAAAAAAAAAGTAAATTTTTTTTAAATTGTACT
1 TTTTTTCGTATATTTATATCTGACTCTGATACG--AAAAAAAG-AAATTTTTTTTAAATTGTACT
* * *
58687044 GGGTGCCGCCCATTAACAGGCCAACACCCAATTTTTTTA
63 GGGTGCCGGCCATTAACAGGCCAACACCTAA----ATTA
* * *
58687083 TTTTTTCGCATATTTATATCTGACTCTGACATA-AAAAAAAAG-AATTTTTTTTAAATAGTACTG
1 TTTTTTCGTATATTTATATCTGACTCTG--ATACGAAAAAAAGAAATTTTTTTTAAATTGTACTG
*
58687146 GGTGCCGGCCATTAACAGGCCAGCACC
64 GGTGCCGGCCATTAACAGGCCAACACC
58687173 CAAAAAAAAA
Statistics
Matches: 248, Mismatches: 23, Indels: 42
0.79 0.07 0.13
Matches are distributed among these distances:
96 69 0.28
97 9 0.04
98 9 0.04
101 45 0.18
102 2 0.01
103 11 0.04
104 53 0.21
106 8 0.03
107 42 0.17
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (97 bp):
TTTTTTCGTATATTTATATCTGACTCTGATACGAAAAAAAGAAATTTTTTTTAAATTGTACTGGG
TGCCGGCCATTAACAGGCCAACACCTAAATTA
Found at i:58686917 original size:104 final size:104
Alignment explanation
Indices: 58686673--58687281 Score: 616
Period size: 107 Copynumber: 5.9 Consensus size: 104
58686663 ATAGAGCATA
58686673 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAA-AGAAATTTTTTTAAAATTGTACTGG
1 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGA-AAATTTTTTT-AAATTGTACTGG
* *
58686737 GTGCCGGCCATTGACAGTCCAGCACCCAAATTTTTTTTAAATT
64 GTGCCGGCCATTGACAGGCCAGCA-CCAAAATTTTTTT-AATT
* * *
58686780 TTTTTCGTATATTTATATCTGATTCTGATACGAAAAAAAGAAAATTTTTTTAATTTGTACTGGGT
1 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAAAATTTTTTTAAATTGTACTGGGT
* * *
58686845 GCCGGCCATTGGCAGGCCAACACCTAAATTTTTTTAATT
66 GCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTAATT
* ** *
58686884 TATTTT-GTATATTTATATCTGATTCTGACAC--------GAATTTTTTTTTAATTTGTACTGGG
1 T-TTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAAAATTTTTTTAAATTGTACTGGG
*
58686940 TGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTATT
65 TGCCGGCCATTGACAGGCCAGCA-CCAAAATTTTTTTAATT
*
58686981 TTTTT-GTATATTTATATCTGACTCTGACACGAAAAAAAAAGTAAATTTTTTTTAAATTGTACTG
1 TTTTTCGTATATTTATATCTGACTCTGACACG--AAAAAAAG-AAAATTTTTTTAAATTGTACTG
* * * *
58687045 GGTGCCGCCCATTAACAGGCCAACACC-CAATTTTTTT-A-T
63 GGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTAATT
* * *
58687084 TTTTTCGCATATTTATATCTGACTCTGACA-TAAAAAAA-AAGAATTTTTTTTAAATAGTACTGG
1 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAA-AA-TTTTTTTAAATTGTACTGG
* *
58687147 GTGCCGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTATT-ATT
64 GTGCCGGCCATTGACAGGCCAGCA-CC-----AAAATTTTTTTAATT
* * * * * * *
58687193 ATTTTCGTATATTTATATCTTATTCTG--AC-TAAAAAAGGAAATTTTTTGT-TACTGT--TGGG
1 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAAAATTTTTT-TAAATTGTACTGGG
58687252 TGCCGGCCATTGACAGGCCAGCACCCAAAA
65 TGCCGGCCATTGACAGGCCAGCA-CCAAAA
58687282 AATAAATTTT
Statistics
Matches: 434, Mismatches: 40, Indels: 64
0.81 0.07 0.12
Matches are distributed among these distances:
96 72 0.17
97 16 0.04
99 6 0.01
100 1 0.00
101 47 0.11
102 2 0.00
103 6 0.01
104 82 0.19
105 24 0.06
106 44 0.10
107 99 0.23
108 11 0.03
109 24 0.06
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (104 bp):
TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAGAAAATTTTTTTAAATTGTACTGGGT
GCCGGCCATTGACAGGCCAGCACCAAAATTTTTTTAATT
Found at i:58687283 original size:104 final size:101
Alignment explanation
Indices: 58686673--58687282 Score: 527
Period size: 104 Copynumber: 5.9 Consensus size: 101
58686663 ATAGAGCATA
* * *
58686673 TTTTTCGTATATTTATATCTGACTCTGACACGAAAAAAAAGAAATTTTTTTAAAATTGTACTGGG
1 TTTTTCGTATATTTATATCTGACTCTGACA-TAAAAAAGA-AAATTTTTTTTAAA-TGTA-TGGG
* * *
58686738 TGCCGGCCATTGACAGTCCAGCACCC-AAATTTTTTTTAAATT
62 TGCCGGCCATTAACAGGCCAGCACCCAAAAATTTTTTT--A-T
* *
58686780 TTTTTCGTATATTTATATCTGATTCTGATACGA-AAAAAAGAAAA-TTTTTTTAATTTGTACTGG
1 TTTTTCGTATATTTATATCTGACTCTG--AC-ATAAAAAAGAAAATTTTTTTTAA-ATGTA-TGG
** * *
58686843 GTGCCGGCCATTGGCAGGCCAACA-CC-TAAATTTTTTTAAT
61 GTGCCGGCCATTAACAGGCCAGCACCCAAAAATTTTTTT-AT
* * * * *
58686883 TTATTTTGTATATTTATATCTGATTCTGAC------ACG-AATTTTTTTTTAATTTGTACTGGGT
1 TT-TTTCGTATATTTATATCTGACTCTGACATAAAAAAGAAAATTTTTTTTAA-ATGTA-TGGGT
* *
58686941 GCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTAT
63 GCCGGCCATTAACAGGCCAGCACCCAAAAATTTTTTTAT
* * *
58686980 TTTTTTGTATATTTATATCTGACTCTGACACGAAAAAAAAAGTAAATTTTTTTTAAATTGTACTG
1 TTTTTCGTATATTTATATCTGACTCTG--AC--ATAAAAAAGAAAATTTTTTTTAAA-TGTA-TG
* *
58687045 GGTGCCGCCCATTAACAGGCCAACACCC---AATTTTTTTAT
60 GGTGCCGGCCATTAACAGGCCAGCACCCAAAAATTTTTTTAT
* *
58687084 TTTTTCGCATATTTATATCTGACTCTGACATAAAAAAAAAGAATTTTTTTTAAATAGTACTGGGT
1 TTTTTCGTATATTTATATCTGACTCTGACATAAAAAAGAA-AATTTTTTTTAAAT-GTA-TGGGT
*
58687149 GCCGGCCATTAACAGGCCAGCACCCAAAAAAAAATTTTATTAT
63 GCCGGCCATTAACAGGCCAGCACCC----AAAAATTTTTTTAT
* * * *
58687192 TATTTTCGTATATTTATATCTTATTCTGAC-TAAAAAAGGAAATTTTTTGTT-ACTGT-TGGGTG
1 T-TTTTCGTATATTTATATCTGACTCTGACATAAAAAAGAAAATTTTTT-TTAAATGTATGGGTG
*
58687254 CCGGCCATTGACAGGCCAGCACCCAAAAA
64 CCGGCCATTAACAGGCCAGCACCCAAAAA
58687283 ATAAATTTTT
Statistics
Matches: 433, Mismatches: 39, Indels: 69
0.80 0.07 0.13
Matches are distributed among these distances:
95 2 0.00
96 67 0.15
97 6 0.01
98 11 0.03
100 14 0.03
101 45 0.10
102 4 0.01
103 3 0.01
104 90 0.21
105 11 0.03
106 41 0.09
107 83 0.19
108 28 0.06
109 27 0.06
110 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (101 bp):
TTTTTCGTATATTTATATCTGACTCTGACATAAAAAAGAAAATTTTTTTTAAATGTATGGGTGCC
GGCCATTAACAGGCCAGCACCCAAAAATTTTTTTAT
Found at i:58688698 original size:160 final size:160
Alignment explanation
Indices: 58688284--58688736 Score: 410
Period size: 160 Copynumber: 2.8 Consensus size: 160
58688274 TTATTCCCCT
* *
58688284 TAACACACTAAGTTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAAGACTA
1 TAACACACTAA-TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATACGA
*
58688349 AGTTTATGATATTTTTTAAAGTAATAAAATACGGAGAAAAAAATACGAAG-AAATGGCAGAAGTA
65 AG-TTATGATATTTTTTAAAGTAATAAAATACGGAGAAAAAAATACG-AGTAAAGGGCAGAAGTA
** *
58688413 AGAGTGTATTACTAACTTTCTTAAAATTCAGAAA
128 AGAGTGTATTA-TAACTTTCACAAAATTAAGAAA
* * * ** * * * *
58688447 TAATTA-A-TACA--AA-ATATTTCAAAGAAAATGTACTGAAATAATATAAAATAATAAAATAGG
1 TAA-CACACTA-ATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATACG
* * * *
58688507 AGAATAATAT-ATTTTTATTTAAAGTAATAAAA-ATC-GAGAAAATAATACGAGTAAAGGGCAGG
64 A-AGT--TATGATATTT-TTTAAAGTAATAAAATA-CGGAGAAAAAAATACGAGTAAAGGGCAGA
* ** * *
58688569 GGTAAGAGT-TATT-T-TTTTTACACCAAATTAATTTAAA
124 AGTAAGAGTGTATTATAACTTT-CACAAAATTAA--GAAA
58688606 TAACACACTAGATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTA-G
1 TAACACACTA-ATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAA-TACG
* * * * *
58688670 AAGTTATGATATTTTTTAAAGGAATAAAATGCGGAGAAAAAAATACGAATAAATGGCCGAAGTAA
64 AAGTTATGATATTTTTTAAAGTAATAAAATACGGAGAAAAAAATACGAGTAAAGGGCAGAAGTAA
58688735 GA
129 GA
58688737 TTTTTTTACT
Statistics
Matches: 227, Mismatches: 43, Indels: 42
0.73 0.14 0.13
Matches are distributed among these distances:
156 3 0.01
157 8 0.04
158 1 0.00
159 52 0.23
160 59 0.26
161 52 0.23
162 6 0.03
163 43 0.19
164 3 0.01
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (160 bp):
TAACACACTAATTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATACGAA
GTTATGATATTTTTTAAAGTAATAAAATACGGAGAAAAAAATACGAGTAAAGGGCAGAAGTAAGA
GTGTATTATAACTTTCACAAAATTAAGAAA
Found at i:58692246 original size:3 final size:3
Alignment explanation
Indices: 58692231--58692298 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
58692221 TACTAACAGT
*
58692231 AAC AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
58692279 AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AA
58692299 TAATAATAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.68, C:0.31, G:0.00, T:0.01
Consensus pattern (3 bp):
AAC
Found at i:58692396 original size:19 final size:21
Alignment explanation
Indices: 58692372--58692410 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
58692362 TTAAAACAAA
*
58692372 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
58692391 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
58692411 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:58692580 original size:27 final size:27
Alignment explanation
Indices: 58692534--58692634 Score: 134
Period size: 27 Copynumber: 3.7 Consensus size: 27
58692524 AATACGAGTA
58692534 GTGCCGCCAAT--CAATATGGCACCATTG
1 GTGCCGCCAATGGC-AT-TGGCACCATTG
58692561 GTGCCGCCAATGGCATTGGCACCATTG
1 GTGCCGCCAATGGCATTGGCACCATTG
** *
58692588 GTGCCGCCAATGGTTTTGGCACCTTTG
1 GTGCCGCCAATGGCATTGGCACCATTG
*
58692615 GTGCCGCCAATGGCTTTGGC
1 GTGCCGCCAATGGCATTGGC
58692635 GTGACCAAGG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 65 0.96
28 2 0.03
29 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.26
Consensus pattern (27 bp):
GTGCCGCCAATGGCATTGGCACCATTG
Found at i:58692710 original size:23 final size:23
Alignment explanation
Indices: 58692684--58692731 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
58692674 AGGTTTTTTT
58692684 AATATATTTTGGTAAATAAAAAA
1 AATATATTTTGGTAAATAAAAAA
58692707 AATATATTTTGGTAAATAAAAAA
1 AATATATTTTGGTAAATAAAAAA
58692730 AA
1 AA
58692732 GTTATAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (23 bp):
AATATATTTTGGTAAATAAAAAA
Found at i:58693918 original size:27 final size:27
Alignment explanation
Indices: 58693861--58693949 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
58693851 TCTGATAGGC
* ** *
58693861 GGCGGCACCAAAGGTGCC-TAACTGATA
1 GGCGGCACCAAAGGTGCCAT-TCCCATG
58693888 GGCGGCACCAAAGGTGCCATTCCCATG
1 GGCGGCACCAAAGGTGCCATTCCCATG
* * *
58693915 GGCGGCATCGATGGTGCCATTCCCATG
1 GGCGGCACCAAAGGTGCCATTCCCATG
*
58693942 GGCAGCAC
1 GGCGGCAC
58693950 TAGTCGTGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.16
Consensus pattern (27 bp):
GGCGGCACCAAAGGTGCCATTCCCATG
Found at i:58698233 original size:16 final size:18
Alignment explanation
Indices: 58698212--58698258 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
58698202 AATAATACTC
58698212 AAAATAATACTAA-C-TA
1 AAAATAATACTAACCATA
58698228 AAAATAATAACTAACCATA
1 AAAATAAT-ACTAACCATA
*
58698247 ATAATAATACTA
1 AAAATAATACTA
58698259 GTTTTTTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 8 0.30
17 5 0.19
18 5 0.19
19 9 0.33
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATAATACTAACCATA
Found at i:58706862 original size:31 final size:31
Alignment explanation
Indices: 58706820--58706895 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
58706810 AATTAATATT
* *
58706820 AAAAAATTTAAAATAAAAG-AAATATTTACAG
1 AAAAAATTTAAAAT-AAAGTAAAAATTAACAG
* *
58706851 AATAATTTTAAAATAAAGTAAAAATTAACAG
1 AAAAAATTTAAAATAAAGTAAAAATTAACAG
58706882 AAAAAATTTAAAAT
1 AAAAAATTTAAAAT
58706896 TGTTGCGATC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 4 0.11
31 34 0.89
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (31 bp):
AAAAAATTTAAAATAAAGTAAAAATTAACAG
Found at i:58709140 original size:22 final size:21
Alignment explanation
Indices: 58709114--58709171 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
58709104 AACCCTTTTT
58709114 TTTCATTCAAATTTTATTTTAA
1 TTTCATT-AAATTTTATTTTAA
** *
58709136 TTTCATTACTTTTTATTTTAT
1 TTTCATTAAATTTTATTTTAA
*
58709157 TTTCCTTTAAATTTT
1 TTT-CATTAAATTTT
58709172 CCTAATATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 14 0.48
22 15 0.52
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTCATTAAATTTTATTTTAA
Found at i:58709583 original size:21 final size:21
Alignment explanation
Indices: 58709553--58709597 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
58709543 TCATTTCAAT
*
58709553 ATTTTTTTTTCATTTCATTTC
1 ATTTTGTTTTCATTTCATTTC
* *
58709574 ATTTTGTTTTTATTTGATTTC
1 ATTTTGTTTTCATTTCATTTC
58709595 ATT
1 ATT
58709598 CTAATTTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.09, G:0.04, T:0.71
Consensus pattern (21 bp):
ATTTTGTTTTCATTTCATTTC
Found at i:58710295 original size:15 final size:15
Alignment explanation
Indices: 58710271--58710302 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
58710261 TTTACCCTAA
58710271 TATTTCATTCTGATT
1 TATTTCATTCTGATT
*
58710286 TATTTTATTCTGATT
1 TATTTCATTCTGATT
58710301 TA
1 TA
58710303 CCCTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.09, G:0.06, T:0.62
Consensus pattern (15 bp):
TATTTCATTCTGATT
Found at i:58710325 original size:38 final size:38
Alignment explanation
Indices: 58710248--58710325 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
58710238 TGTGTGTTGC
*
58710248 TATTTTATTCTGATTTACCCTAATATTTCATTCTGATT
1 TATTTTATTCTGATTTACCCTAATATTTCATTCTAATT
58710286 TATTTTATTCTGATTTACCCTAATATTTCATT-TAAATT
1 TATTTTATTCTGATTTACCCTAATATTTCATTCT-AATT
58710324 TA
1 TA
58710326 AATTTTATCC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 1 0.03
38 37 0.97
ACGTcount: A:0.27, C:0.14, G:0.04, T:0.55
Consensus pattern (38 bp):
TATTTTATTCTGATTTACCCTAATATTTCATTCTAATT
Found at i:58715972 original size:51 final size:51
Alignment explanation
Indices: 58715852--58716141 Score: 215
Period size: 51 Copynumber: 5.7 Consensus size: 51
58715842 TATCATTCGA
* *
58715852 TACACGTAGTAGCCTTCACAT-AGTACTATACACGTGATCA-AG-TT-TTACGG
1 TACACGTAGTAGCCTTCAC-TCAGTACTACACACGTGCTCAGAGCTTCTT--GG
58715902 CT-CACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAGAGCTTCTTGG
1 -TACACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAGAGCTTCTTGG
* * * * *
58715953 TACACATAGTAGCCTTCACTTAGTACTACACATGTGAC-C-GTAGTTTAC-CGAG
1 TACACGTAGTAGCCTTCACTCAGTACTACACACGTG-CTCAG-AGCTT-CTTG-G
* * * * * *
58716005 -ACCCGTGGTAGCATGCACACAGTACTACACACGTGCTCAAAGCTTCTTGG
1 TACACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAGAGCTTCTTGG
* * * * * * *
58716055 TACACATAGTAGCCTTCACTTAGTACTACACATGTGAC-CATTA-CTTATCGA
1 TACACGTAGTAGCCTTCACTCAGTACTACACACGTG-CTCA-GAGCTTCTTGG
* *
58716106 TACACGTAGTAGCCTTCACACAGTACTACATACGTG
1 TACACGTAGTAGCCTTCACTCAGTACTACACACGTG
58716142 TTCATCGATA
Statistics
Matches: 189, Mismatches: 35, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
49 1 0.01
50 39 0.21
51 140 0.74
52 7 0.04
53 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAGAGCTTCTTGG
Found at i:58716118 original size:102 final size:102
Alignment explanation
Indices: 58715904--58716141 Score: 361
Period size: 102 Copynumber: 2.3 Consensus size: 102
58715894 TTTTACGGCT
* *
58715904 CACGTAGTAGCCTTCACTCAGTACTACACACGTGCTCAGAGCTTCTTGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTCTTGGTACACATAGTAGCCTT
*
58715969 CACTTAGTACTACACATGTGACCGTAGTTTACCGAGA
66 CACTTAGTACTACACATGTGACCGTAGCTTACCGAGA
* * * *
58716006 CCCGTGGTAGCATGCACACAGTACTACACACGTGCTCAAAGCTTCTTGGTACACATAGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTCTTGGTACACATAGTAGCCTT
* * *
58716071 CACTTAGTACTACACATGTGACCATTA-CTTATCGATA
66 CACTTAGTACTACACATGTGACC-GTAGCTTACCGAGA
*
58716108 CACGTAGTAGCCTTCACACAGTACTACATACGTG
1 CACGTAGTAGCCTTCACACAGTACTACACACGTG
58716142 TTCATCGATA
Statistics
Matches: 120, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
102 118 0.98
103 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (102 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAAGCTTCTTGGTACACATAGTAGCCTT
CACTTAGTACTACACATGTGACCGTAGCTTACCGAGA
Found at i:58716491 original size:30 final size:30
Alignment explanation
Indices: 58716457--58716514 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
58716447 GCTTCGTCTC
*
58716457 AACTTTTATAAAATTACGA-TTTTGTCCCTA
1 AACTTTTACAAAATTAC-ATTTTTGTCCCTA
*
58716487 AACTTTTACATAATTACATTTTTGTCCC
1 AACTTTTACAAAATTACATTTTTGTCCC
58716515 AAGCTCGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.31, C:0.19, G:0.05, T:0.45
Consensus pattern (30 bp):
AACTTTTACAAAATTACATTTTTGTCCCTA
Found at i:58731886 original size:904 final size:905
Alignment explanation
Indices: 58724225--58736000 Score: 20402
Period size: 905 Copynumber: 13.0 Consensus size: 905
58724215 CACCATCGAT
* * * * *
58724225 ATTGCCTAATAAACATTTTCACGAGATGCTGTCAATTTTACGTTCAATTAATGGAGAATGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* * * *
58724290 ACTACCTTTGTGACATACGTTTTGAAC-GTCGGGCACAAGCATACGACGGTGGCCTACGAGATGG
66 ACTACCTTTGTGACATACGTTTCGAACAGT-GGGCACCAGCATACGACGGCGGCCTACGATATGG
*
58724354 CCATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTCTTAAAGGAACGA-GCCATCTGTCG
130 CCATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAAC-ACGCCATCTGTCG
* * *
58724418 ATAACACCGATTGTGCAAGAGACATATTTTCGTTTGGCGGCGCTATTTCCAAAGCGAGCAGCAAG
194 ATAACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAG
58724483 CTATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGG
259 CTATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGG
* * * * *
58724548 -CAATTGTACGGGAAAACACCATGCACACAGTGTTTCACGATCGGGACAACTTATTGTTTCGCGT
324 ACAA-TGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGT
* *
58724612 GACAGA-TTATGACAGACTGCACCAAGGTGTTGTTGGCGGGCAATATCATGTACACTTGCGAAAT
388 GACAGAGTT-TGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAAT
*
58724676 AGGACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGTTCATGTTATTGCAGCTTG
452 AGGACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTG
*
58724741 TCAGAATCTCCGTTTGGATCAGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACA
517 TCAGAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACA
* ** *
58724806 ACATCTAGAGACACGTTTTCCCACCGGTCCGAGATGATTGTAAGTGGCCGCTCGTATCTTTTGCT
582 ACGTCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCT
* * * * *
58724871 CCTTTTAAGCTGTTACCGGATAGAGAATTACGTCGTAAACCAAAGGGTCAACCTTGCTCGACTAG
647 CCTTTTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAG
** *
58724936 AATACGCAACAATATGGATATCCGGGAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGA
712 AATACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGA
*
58725001 ATCCAGGCCATACAAGTCGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTA
777 ATCCAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTA
*
58725066 TATTTGTAAAATTATTAATTGATAAATTGTATTAATGGTCAGTAAAATTATCAAATTATATAAA
842 TATTTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* *
58725130 ATTGCCTAATACACGTTTTCACGAGATGCTGTCAATTCTACGTTCAATTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58725195 ACTACCTTTGTGACATACGTTTCGAACAGTGGCCACCAGCATACGACGGCGGACTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
*
58725260 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCTATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
* *
58725325 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAACGAGCAGGAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
* * *
58725390 ATGCAGGCCAAATGTAGGGAGGCCACGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
* *
58725455 AATGGACGAGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
58725520 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58725585 CTTGCGACGGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
58725650 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
* * *
58725715 CTAGAGACACGTTTTCCCACTGGTCTGAGATGAACGTAAGTGGCCGCCCGTATCTTCTGCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
*
58725780 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAAGTCGACCTTGCTCGACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
*
58725845 CATAACAATATGGATATTCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
* * *
58725910 AGGTCATACGAGTAGACCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
58725975 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* *
58726035 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTTAATTAACGGAGAAGTGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58726100 CCTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGACTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* * *
58726165 CATATGACGACAAACCTGGCTGGATGCATAAATTCTGTTATTAAAGGAACACGCTATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
* *
58726230 CACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGTAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
*
58726295 ATGCAGGCCAGATGCAGGGAGGCCACGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
*
58726360 AATGCACGAGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
58726425 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
* * *
58726490 CTTGCGAGTGTGGGGTGTTTGATGCATTTTGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
*
58726555 AATCTCCGTTTGGATCCGATGAGTTATGTGGATGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
* *
58726620 CTAGAGACACGTTTTCCCACTGGTCTGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* *
58726685 TTAAGCTGTTGGTGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* *
58726750 CATAACAAAATGGATATCTGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
*
58726815 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTACAAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
58726880 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
*
58726940 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAACTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
*
58727005 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGTGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58727070 CATCTGACGTCAAACCTGGTTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
* * * *
58727135 AACACTGGTTGTGTGAGAGACATATTTTCGTGTGGCAGCACTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
*
58727200 ATGCAGGCCAGATGCAGGGAGGCCATGTTTGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
58727265 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
58727330 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58727395 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGTTCATGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
*
58727460 AATCTCCATTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
*
58727525 CTAGAGACACGTTTTCCCACTGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTTCC-
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGC-TCCT
** *
58727589 TTTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAAGTAAAAGGTCAACCTTGCTCGACTAGAAT
650 TTTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAAT
*
58727654 ACATAACAATATGGATATCCGGCAAACAGCCAGTGAAACGAAGTTGTGCGGATGGTGTAGGAATC
715 ACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATC
** *
58727719 CAGGCCATATGAGTAGACCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATAT
780 CAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATAT
*
58727784 TTGTAAAAATATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
845 TTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
*
58727845 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTATGTTCAATTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* * * * *
58727910 TCAACCTTTGTGACATACGTTTCGAACAGTGGTCACCAGCATACGACGTCGGACTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58727975 CATATGACGTCAAACCCGGCTGAATGCATAAATTCTATTATTAAAGGAACACGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
*
58728040 AACACCGGTTGTGCGAGAGACATATTTTCCTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
* *
58728105 ATGCAGGCCAGATGCAGGGAGGTCATGTATGGTACAGTAAGGTAGTTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
*
58728170 AATGCACGAGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
* *
58728235 AGATTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCAAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58728300 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCAGGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
*
58728365 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATATACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
* * * *
58728430 CTAGAGACACGTTTTCTCATCGGTCTGAGATGAACGTAAGTGGCCGCCCGTATCTTCTGCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* * *
58728495 CTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCACTACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* * * *
58728560 AATAACATTATGGACATCCGGCAAACAGCCAGTCAAACGAAGTTTTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
58728625 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
*
58728690 TGTTAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* ** * *
58728750 ATTGCCTAATACACGTTTGCACAAGATGCTGTCAATTTTACGTTGTATTAACGGAGAATGGGCAG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58728815 ACTACCTTTGTGACATACGTTTCAAACAGTGGGCACCAGCAAACGACGGCGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* * *
58728880 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTG-CTAA
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTC-GA
* * *
58728944 TAACACCGGTTGTGCGAGAGACATATTTTCATTTGGCGACGCTATTTCCAAAGCGAGCAGCAAGC
195 TAACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGC
*
58729009 TATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGC
260 TATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGA
*
58729074 CAATACACGGGCAAACA-CATGCACACA--GTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
325 CAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
58729136 CAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGC--G-------G-G-----TTGCGAAATAGG
390 CAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGG
58729186 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
455 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
** *
58729251 GAATCTCCGTTTGGATTAGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATATACAACG
520 GAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACG
* *
58729316 TCTAGAGACACGTTTTCCCACCAGTCCGAGATGAACGTAAGTGGCCGCTCGTATCTTTTGCTCCT
585 TCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCT
* *
58729381 TTTAAGCTGTTA-CTGGATAGAGAATTACGTCGCAAACCAAAGGGTCGACCTTGCTCGACTAGAA
650 TTTAAGCTGTTAGC-GGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAA
* * *
58729445 TACGTAACAATATGGATATCCGGGAAACCGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAAT
714 TACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAAT
*
58729510 CCAGGCCATACAAGTCGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAA--ATA
779 CCAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATA
*
58729573 TTTTTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
844 TTTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* * * *
58729635 ATTTCCTAATACAAGTTTTCACGAGATGCTGTCAATTTTACGTTCAATTAACGGAAAAGGGGGGC
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAA--GGGGC
* * *
58729700 AGACTACCTTTGTGACATACGTTTCGAACAGTGGGAACAAGCATACGACGGCGGCCTACGATATG
64 GGACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATG
*
58729765 GCCATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTCTTAAAGGAACACGCCATCTGTCG
129 GCCATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCG
* * *
58729830 ATAACACCGGTTGTGTGAAAGACATATTTTCGTGTGGCGGCACTATTTCCAAAGCGAGCAGCAAG
194 ATAACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAG
* *
58729895 CTATGCAGGCCAGATGTAGGGAGGCCATGTATGGTGCAGTAAGGTAGCTCAAGAAATAAACAAGG
259 CTATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGG
58729960 ACAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTG
324 ACAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTG
*
58730025 ACAGAGTTTGACAGACTGCCCCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAG
389 ACAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAG
58730090 GACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTC
454 GACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTC
58730155 AGAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAAC
519 AGAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAAC
*
58730220 GTCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTTCTCC
584 GTCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCC
*
58730285 TTTTAAGCTGTTAGCGGATAGAAAATTATGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAA
649 TTTTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAA
* *
58730350 TACATAACAATATGGATATCCGACAAACAGCCAGTGAAACGAAGTTGTGCGGATGGTGTAGGAAT
714 TACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAAT
*
58730415 CCAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGTAAAAAAAATTATA
779 CCAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATA
*
58730480 TTTGTAAAATTATTAACTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
844 TTTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* * * * *
58730542 ATTGCCTAATACACGTTTTCACGAGATGCTGTCAATTTTACGTTTAACTAACAGAGAAGGGGCAG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58730607 ACTATCTTTGTGACATACGTTTCGAACAATGGGCACCAGCATACGACGGCGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58730672 CATATGACGTCAAACCTGGTTGAATGCATAAATTATGTTATTAAAGGAACACGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
58730737 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
*
58730802 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGCTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
58730867 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
* *
58730932 AGAGTTTGACAGACTGCCCCAAGGTGTTGTTGGCGGGTAATATTGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58730997 CTTGCGACTGTGGGGTGTTTGGTGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
58731062 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
*
58731127 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTTCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* *
58731192 TTAAGCTGTTAGCGGATAGAAAATTATGTCACAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* *
58731257 CATAACAATATGGATATCCGACAAACAGCCAGTGAAACGAAGTTGTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
*
58731322 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTG-TAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
*
58731386 TGTAAAATTATTAACTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* * * *
58731446 ATTGCCTAATACACGTTTTCACGAGATGCTGTCAATTTTACGTTTAACTAACGGAGAAGGGGCAG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
58731511 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
*
58731576 CATATGACGTCAAACCTGGTTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
58731641 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
58731706 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
* * *
58731771 AATGCATGAGCAAATACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
* *
58731836 AGAGTTTGACAGACTACACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTAGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58731901 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCACTCATGTTATTGCAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
*
58731966 AATCTTCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
* *
58732031 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCATATCTTTTGCTCTTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* *
58732096 TTAAGGTTTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* * *
58732161 CATAACAATATGGATATCTGGAAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCT
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
58732226 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
58732291 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* *
58732351 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTAGGTTCAACTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58732416 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGACGGCCTATGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58732481 CATATGACGTGAAACCTGGTTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
*
58732546 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCAGCGCTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
58732611 ATGCAGG-CACGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGA
261 ATGCAGGCCA-GATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGA
58732675 CAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
325 CAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
*
58732740 CAGAGTTTGACAGACTGCACGAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGG
390 CAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGG
58732805 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
455 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
*
58732870 GAATCTCCGTTTGGATCCGATGAATTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACG
520 GAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACG
* * *
58732935 TCTAGAGACACGTTTTCCCACTGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTACTTCT
585 TCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCT
* *
58733000 TTTAAGCTGTTAGCGGATAGAAAATTACATCGCAAAGCAAAAGGTCGACCTTGCTCGACTAGAAT
650 TTTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAAT
* *
58733065 ACATAACAATATGGATATCCGGTAAACAGCCAGTGAAACGAAGTTGTGCGGATGGTGTAGGAATC
715 ACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATC
* ** * *
58733130 CAGGTCATATGAGTATACCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATAT
780 CAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATAT
58733195 TTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
845 TTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* * * *
58733256 ATTTCCTAATACATGTTTTCACAAGATGTTGTCAATTTTATGTTCAATTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58733321 GCTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGACTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
*
58733386 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACATGCCATCTGTCGAT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
*
58733451 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGGGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
* *
58733516 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAACCAAGGCC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
*
58733581 AATGCACGAGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
*
58733646 AGAGTTTGACAGACTGCACGAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
*
58733711 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTTAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
58733776 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
* * * *
58733841 CCAGAGACACGTTTTCTCATCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTCTGCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* * *
58733906 TTAAGTTGTTAGCGGATAGAAAATTACGTCACAAACCAAAAGGTCGACCTTGCTCGACTAAAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* * * *
58733971 AATAACATTATGGACATCCGGCAAACAGCCAGTCAAACGAAGTTTTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
58734036 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
*
58734101 TGTTAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* *
58734161 ATTGCCTAATACACGTTTGCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAATGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
*
58734226 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGTGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58734291 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACGCGCCATCTG-CTAA
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTC-GA
* * *
58734355 TAACACCGGTTGTGCGAGAGACATATTTTCATTTGGCGACGCTATTTCCAAAGCGAGCAGCAAGC
195 TAACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGC
* **
58734420 TATGCAGGCCAGATGCAGGGAGGCCATGTATGTTGCAGTAAGGTAGTTCAAGAAATAAACAAGTC
260 TATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGA
58734485 CAATGCACGGGCAAACA-CATGCACACA--GTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
325 CAATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGA
* *
58734547 CAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCAGGCAATATCGTGTACACTTGCGAAATAGG
390 CAGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGG
58734612 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
455 ACTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCA
* ** *
58734677 GAATCTCCATTTGGATTAGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATATACAACG
520 GAATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACG
*
58734742 TCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCATATCTTTTGCTCCT
585 TCTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCT
* *
58734807 TTTAAGCTGTTA-CTGGATAGAGAATTACGTCGCAAACCAAAGGGTCGACCTTGCTCGACTAGAA
650 TTTAAGCTGTTAGC-GGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAA
* * * *
58734871 TACGTAACAATATGGATATCCGGGAAACCGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGAAAT
714 TACATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAAT
* *
58734936 CTAGGCCATACAAGTCGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTAT-
779 CCAGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATA
58735000 TTT-TAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
844 TTTGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* ** *
58735061 ATTTCCTAATACACGTTTTCATGAGATGCTGTCAATTTTACGTTCATTTAACGGAGAAGGGGCGG
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
* *
58735126 ACTACCTTTGTGACATACGTTTCGAACAGTGGGAACAAGCATACGACGGCGGCCTACGATATGGC
66 ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
* *
58735191 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTCTTAAAGGAACACGCCATCTGTCGGT
131 CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
* *
58735256 AACACCGGTTGTGTGAGAGACATATTTTCGTGTGGCGGCACTATTTCCAAAGCGAGCAGCAAGCT
196 AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
*
58735321 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGCTCAAGAAATAAACAAGGAC
261 ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
58735386 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
326 AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
*
58735451 AGAGTTTGACAGACTGCCCCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
391 AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
* * *
58735516 TTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCTATGCGCTCATGTTATTGTAGCTTGTCAG
456 CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
58735581 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
521 AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
58735646 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
586 CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
* *
58735711 TTAAGCTGTTAGCAGATAGAAAATTACGTCGCAAACTAAAAGGTCGACCTTGCTCGACTAGAATA
651 TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
* * *
58735776 CATAACAATATGGATATTCGGGAAACAGCCAATCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
716 CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
* * *
58735841 AGGCCATACAAGTCGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCGAAAAACATTATATT
781 AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
58735906 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
846 TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
* *
58735966 ATTCCCTAATACACGTTTTCACGAGATGCTGTCAA
1 ATTGCCTAATACACGTTTTCACAAGATGCTGTCAA
58736001 ATTATATAAA
Statistics
Matches: 10336, Mismatches: 491, Indels: 88
0.95 0.04 0.01
Matches are distributed among these distances:
885 114 0.01
886 1 0.00
887 635 0.06
888 11 0.00
890 69 0.01
892 2 0.00
893 1 0.00
899 1 0.00
900 376 0.04
901 15 0.00
902 527 0.05
903 463 0.04
904 908 0.09
905 7085 0.69
906 13 0.00
907 115 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (905 bp):
ATTGCCTAATACACGTTTTCACAAGATGCTGTCAATTTTACGTTCAATTAACGGAGAAGGGGCGG
ACTACCTTTGTGACATACGTTTCGAACAGTGGGCACCAGCATACGACGGCGGCCTACGATATGGC
CATATGACGTCAAACCTGGCTGAATGCATAAATTCTGTTATTAAAGGAACACGCCATCTGTCGAT
AACACCGGTTGTGCGAGAGACATATTTTCGTGTGGCGGCGCTATTTCCAAAGCGAGCAGCAAGCT
ATGCAGGCCAGATGCAGGGAGGCCATGTATGGTGCAGTAAGGTAGTTCAAGAAATAAACAAGGAC
AATGCACGGGCAAACACCATGCACACAGTGTGTCACGATCGAGACAACTTATGGTTTCGCGTGAC
AGAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGTAATATCGTGTACACTTGCGAAATAGGA
CTTGCGACTGTGGGGTGTTTGATGCACTTCGTTATCCATGCGCTCATGTTATTGCAGCTTGTCAG
AATCTCCGTTTGGATCCGATGAGTTATGTGGACGAAGTGTACAAATTAGAAAACATGTACAACGT
CTAGAGACACGTTTTCCCACCGGTCCGAGATGAACGTAAGTGGCCGCCCGTATCTTTTGCTCCTT
TTAAGCTGTTAGCGGATAGAAAATTACGTCGCAAACCAAAAGGTCGACCTTGCTCGACTAGAATA
CATAACAATATGGATATCCGGCAAACAGCCAGTCAAACGAAGTTGTGCGGATGGTGTAGGAATCC
AGGCCATACAAGTAGATCATGCCCTAATCGCAATAGTTGAATGTAATTGCAAAAAAAATTATATT
TGTAAAATTATTAATTGATAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAA
Found at i:58736065 original size:18 final size:18
Alignment explanation
Indices: 58736042--58736077 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
58736032 TTCCTCTCCT
*
58736042 TTTCTTTCTTTTTCTTTC
1 TTTCTTTCTTCTTCTTTC
58736060 TTTCTTTCTTCTTCTTTC
1 TTTCTTTCTTCTTCTTTC
58736078 CCTCTCCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTCTTTCTTCTTCTTTC
Found at i:58753087 original size:17 final size:18
Alignment explanation
Indices: 58753037--58753090 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 18
58753027 TATTGCCCCC
58753037 TAAGTTCAAAATTAATTA
1 TAAGTTCAAAATTAATTA
* *
58753055 TAACTCGTAAACAATTAATT-
1 TAAGT--TCAA-AATTAATTA
58753075 TAAGTTCAAAATTAAT
1 TAAGTTCAAAATTAAT
58753091 CCTTTGCCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.24
18 7 0.24
20 7 0.24
21 8 0.28
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (18 bp):
TAAGTTCAAAATTAATTA
Found at i:58756811 original size:42 final size:42
Alignment explanation
Indices: 58756719--58756885 Score: 192
Period size: 42 Copynumber: 3.9 Consensus size: 42
58756709 TCTGATATGC
* * * * **
58756719 GAACCCTTAGTGCAGGTTATGTGAACCCCCTTAGTGAGTATATGC
1 GAACCCTTAGTACATG-TATGTG-A-TCCCTTAGTGAATATATAT
* *
58756764 AAACCCTTAGTACATGTATGAT-ATCCCTTAATGAATATATAT
1 GAACCCTTAGTACATGTATG-TGATCCCTTAGTGAATATATAT
*
58756806 GAACCCTTAGTACATGTATGTGATCCCTTAGTGAATATATGT
1 GAACCCTTAGTACATGTATGTGATCCCTTAGTGAATATATAT
* *
58756848 GAACCTTTAGTACATGTATGTGATCCATTAGTGAATAT
1 GAACCCTTAGTACATGTATGTGATCCCTTAGTGAATAT
58756886 GAGCGAAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 87 0.81
43 1 0.01
44 4 0.04
45 14 0.13
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (42 bp):
GAACCCTTAGTACATGTATGTGATCCCTTAGTGAATATATAT
Found at i:58756863 original size:84 final size:87
Alignment explanation
Indices: 58756719--58756885 Score: 216
Period size: 84 Copynumber: 2.0 Consensus size: 87
58756709 TCTGATATGC
* *
58756719 GAACCCTTAGTGCAGGTTATGTGAACCCCCTTAGTGAGTATATGCAAACCCTTAGTACATGTATG
1 GAACCCTTAGTACAGGTTATGTGAACCCCCTTAGTGAATATATGCAAACCCTTAGTACATGTATG
*
58756784 AT-ATCCCTTAATGAATATATAT
66 -TGATCCATTAATGAATATATAT
* * ** *
58756806 GAACCCTTAGTACATG-TATGTG-A-TCCCTTAGTGAATATATGTGAACCTTTAGTACATGTATG
1 GAACCCTTAGTACAGGTTATGTGAACCCCCTTAGTGAATATATGCAAACCCTTAGTACATGTATG
*
58756868 TGATCCATTAGTGAATAT
66 TGATCCATTAATGAATAT
58756886 GAGCGAAACC
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
83 1 0.01
84 48 0.69
85 1 0.01
86 6 0.09
87 14 0.20
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (87 bp):
GAACCCTTAGTACAGGTTATGTGAACCCCCTTAGTGAATATATGCAAACCCTTAGTACATGTATG
TGATCCATTAATGAATATATAT
Found at i:58756868 original size:21 final size:21
Alignment explanation
Indices: 58756765--58756879 Score: 101
Period size: 21 Copynumber: 5.5 Consensus size: 21
58756755 AGTATATGCA
58756765 AACCCTTAGTACATGTATGAT-
1 AACCCTTAGTACATGTATG-TG
* * * *
58756786 ATCCCTTAATGA-ATATATATG
1 AACCCTTAGT-ACATGTATGTG
58756807 AACCCTTAGTACATGTATGTG
1 AACCCTTAGTACATGTATGTG
* *
58756828 ATCCCTTAGTGA-ATATATGTG
1 AACCCTTAGT-ACATGTATGTG
*
58756849 AACCTTTAGTACATGTATGTG
1 AACCCTTAGTACATGTATGTG
* *
58756870 ATCCATTAGT
1 AACCCTTAGT
58756880 GAATATGAGC
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
20 3 0.04
21 69 0.93
22 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (21 bp):
AACCCTTAGTACATGTATGTG
Found at i:58761011 original size:23 final size:22
Alignment explanation
Indices: 58760959--58761023 Score: 80
Period size: 23 Copynumber: 3.0 Consensus size: 22
58760949 CCTGATTAGT
*
58760959 ATACGACTCATAAGTGCCT-AA
1 ATACGACACATAAGTGCCTGAA
58760980 A-ACGACACATGAAGTGCCTGAA
1 ATACGACACAT-AAGTGCCTGAA
*
58761002 ATACGACACATAAATTGCCTGA
1 ATACGACACAT-AAGTGCCTGA
58761024 TCGGCAAAGC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 8 0.21
21 9 0.24
22 3 0.08
23 18 0.47
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (22 bp):
ATACGACACATAAGTGCCTGAA
Found at i:58762905 original size:43 final size:43
Alignment explanation
Indices: 58762844--58763011 Score: 200
Period size: 43 Copynumber: 3.9 Consensus size: 43
58762834 GATTTCTGAT
** *
58762844 TTGTGTTTTTGTGTAAGACCACGTCTGGGATGTTGGCA-CTGAC
1 TTGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATC-GAC
* **
58762887 TTGTGTTTTCGTGTAAGACCACGTCTGAAACGTTGGCATCGAC
1 TTGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAC
58762930 TTGTGTTTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-
1 TTGTGTTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAC
* *
58762972 TCTGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 T-TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
58763012 TGTACGAGCC
Statistics
Matches: 110, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.03
43 104 0.95
44 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.33
Consensus pattern (43 bp):
TTGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCATCGAC
Found at i:58764128 original size:32 final size:32
Alignment explanation
Indices: 58764090--58764150 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
58764080 AAGTACAACA
*
58764090 ATATGATTGGCACA-AAGCCATCAGTAGCAGTG
1 ATATGATCGGCACACAA-CCATCAGTAGCAGTG
*
58764122 ATATGATCGGCATACAACCATCAGTAGCA
1 ATATGATCGGCACACAACCATCAGTAGCA
58764151 TCGTAGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (32 bp):
ATATGATCGGCACACAACCATCAGTAGCAGTG
Found at i:58764182 original size:26 final size:26
Alignment explanation
Indices: 58764150--58764213 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
58764140 CATCAGTAGC
* *
58764150 ATCGTAGCAAAGCTGCCAGCAACAGT
1 ATCGTAGCAAAGCTACCAGCAACAAT
*
58764176 ATCGTAGCAAAGCTACCAGTAACAAT
1 ATCGTAGCAAAGCTACCAGCAACAAT
* *
58764202 ATTGCAGCAAAG
1 ATCGTAGCAAAG
58764214 TCACCAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.17
Consensus pattern (26 bp):
ATCGTAGCAAAGCTACCAGCAACAAT
Found at i:58764371 original size:11 final size:11
Alignment explanation
Indices: 58764355--58764397 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
58764345 AATCATTCAT
58764355 ACAAATCACAG
1 ACAAATCACAG
*
58764366 ACAAATCAGTCAT
1 ACAAATCA--CAG
*
58764379 ACCAATCACAG
1 ACAAATCACAG
58764390 ACAAATCA
1 ACAAATCA
58764398 GTCATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.51, C:0.28, G:0.07, T:0.14
Consensus pattern (11 bp):
ACAAATCACAG
Found at i:58764372 original size:24 final size:24
Alignment explanation
Indices: 58764345--58764419 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
58764335 CCATGCTCAG
*
58764345 AATCATTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
*
58764369 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
** *
58764393 AATCAGTCATTTAAATCATAGACA
1 AATCAGTCATACAAATCACAGACA
58764417 AAT
1 AAT
58764420 TAATCATATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.48, C:0.23, G:0.07, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:58764543 original size:27 final size:27
Alignment explanation
Indices: 58764503--58764669 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
58764493 GGTATTACCG
* * * * *
58764503 TCATTTT-TCCTACAAGGGCGTCACGG
1 TCATTTTACCCTACAGGGGCATTACGA
* * *
58764529 TCATTCTACCCTACAGGGGTATTTA-GG
1 TCATTTTACCCTACAGGGGCA-TTACGA
58764556 TCATTTTACCCTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGA
* *
58764583 TTATTTTACCTTACAGGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGA
* * *
58764610 TCAATTTACCCTATAAGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGA
*
58764637 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGA
58764664 TCATTT
1 TCATTT
58764670 GTGGCCCATT
Statistics
Matches: 118, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 9 0.08
27 107 0.91
28 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGA
Found at i:58764601 original size:54 final size:54
Alignment explanation
Indices: 58764496--58764669 Score: 208
Period size: 54 Copynumber: 3.2 Consensus size: 54
58764486 TAACAGAGGT
* * * * * * *
58764496 ATTACCGTCATTTT-TCCTACAAGGGCGTCACGGTCATTCTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACAAGGGCATTACGATCATTTTACCCTACAGGGGC
* * *
58764549 ATTTA-GGTCATTTTACCCTACAGGGGCATTACGATTATTTTACCTTACAGGGGC
1 A-TTACGGTCATTTTACCCTACAAGGGCATTACGATCATTTTACCCTACAGGGGC
* * *
58764603 ATTACGATCAATTTACCCTATAAGGGCATTACGATCATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAAGGGCATTACGATCATTTTACCCTACAGGGGC
58764657 ATTACGGTCATTT
1 ATTACGGTCATTT
58764670 GTGGCCCATT
Statistics
Matches: 100, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (54 bp):
ATTACGGTCATTTTACCCTACAAGGGCATTACGATCATTTTACCCTACAGGGGC
Found at i:58768456 original size:23 final size:24
Alignment explanation
Indices: 58768430--58768475 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
58768420 TTACTAAGCA
58768430 ATATATATT-TTATTATTA-AATAC
1 ATATAT-TTATTATTATTACAATAC
*
58768453 ATATGTTTATTATTATTACAATA
1 ATATATTTATTATTATTACAATA
58768476 ATAATAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 14 0.70
24 4 0.20
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
ATATATTTATTATTATTACAATAC
Found at i:58768463 original size:20 final size:19
Alignment explanation
Indices: 58768429--58768467 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
58768419 ATTACTAAGC
*
58768429 AATATATATTTTATTATTA
1 AATACATATTTTATTATTA
58768448 AATACATATGTTTATTATTA
1 AATACATAT-TTTATTATTA
58768468 TTACAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (19 bp):
AATACATATTTTATTATTA
Found at i:58768545 original size:16 final size:14
Alignment explanation
Indices: 58768474--58768545 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 14
58768464 ATTATTACAA
58768474 TAATAATAATAA-T
1 TAATAATAATAATT
* *
58768487 T-ACAACAATAATT
1 TAATAATAATAATT
58768500 TAAT-ATAATAATT
1 TAATAATAATAATT
*
58768513 TAATAA-ATATCTATT
1 TAATAATA-AT-AATT
58768528 TAATAATCAATATATT
1 TAATAAT-AATA-ATT
58768544 TA
1 TA
58768546 TTACAAGTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
12 8 0.18
13 16 0.36
14 4 0.09
15 9 0.20
16 7 0.16
17 1 0.02
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
TAATAATAATAATT
Found at i:58769742 original size:69 final size:69
Alignment explanation
Indices: 58769631--58769772 Score: 266
Period size: 69 Copynumber: 2.1 Consensus size: 69
58769621 GCAAAGAGGT
58769631 ATGACTTACCAGTCCCGAACCTTTCACCTTACAAATATGCCTCGATGGTGTTCCAACAACAATCT
1 ATGACTTACCAGTCCCGAACCTTTCACCTTACAAATATGCCTCGATGGTGTTCCAACAACAATCT
58769696 GGGA
66 GGGA
*
58769700 ATGACTTACCAGTCCTGAACCTTTCACCTTACAAATATGCCTCGATGGTGTTCCAACAACAATCT
1 ATGACTTACCAGTCCCGAACCTTTCACCTTACAAATATGCCTCGATGGTGTTCCAACAACAATCT
*
58769765 GGGG
66 GGGA
58769769 ATGA
1 ATGA
58769773 AGAGGATGAG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (69 bp):
ATGACTTACCAGTCCCGAACCTTTCACCTTACAAATATGCCTCGATGGTGTTCCAACAACAATCT
GGGA
Found at i:58774319 original size:21 final size:21
Alignment explanation
Indices: 58774293--58774332 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
58774283 TGGCCGTATG
58774293 AGCCATACAGGCTAGCTAAGT
1 AGCCATACAGGCTAGCTAAGT
58774314 AGCCATACAGGCTAGCTAA
1 AGCCATACAGGCTAGCTAA
58774333 ATAGTTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (21 bp):
AGCCATACAGGCTAGCTAAGT
Found at i:58774596 original size:12 final size:12
Alignment explanation
Indices: 58774579--58774622 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
58774569 ATGCCACACA
58774579 GCCGTGTGCTAG
1 GCCGTGTGCTAG
*
58774591 GCCGTGTGGTAG
1 GCCGTGTGCTAG
*
58774603 GCCATGTGCT-G
1 GCCGTGTGCTAG
58774614 GACCGTGTG
1 G-CCGTGTG
58774623 AGACACACGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.09, C:0.23, G:0.43, T:0.25
Consensus pattern (12 bp):
GCCGTGTGCTAG
Found at i:58777626 original size:16 final size:15
Alignment explanation
Indices: 58777607--58777655 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
58777597 TTTGAAAAAA
58777607 AATAATGATAATTGTG
1 AATAATGATAATT-TG
*
58777623 AATAATGATACTTTG
1 AATAATGATAATTTG
* *
58777638 AATAGTCAT-ATTTG
1 AATAATGATAATTTG
58777652 AATA
1 AATA
58777656 TTTTAGGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 8 0.28
15 9 0.31
16 12 0.41
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (15 bp):
AATAATGATAATTTG
Found at i:58777799 original size:3 final size:3
Alignment explanation
Indices: 58777791--58777831 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
58777781 TAATTATGAG
* *
58777791 TAA TAA TAA TAA TAA TAG TAA TAC TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
58777832 GAAATCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:58779920 original size:15 final size:16
Alignment explanation
Indices: 58779882--58779913 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
58779872 CTAGCCCCTA
58779882 ACCCTAGCCTGTTGCC
1 ACCCTAGCCTGTTGCC
58779898 ACCCTAGCCT-TTGCC
1 ACCCTAGCCTGTTGCC
58779913 A
1 A
58779914 TGCTAGCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.16, C:0.44, G:0.16, T:0.25
Consensus pattern (16 bp):
ACCCTAGCCTGTTGCC
Found at i:58780834 original size:3 final size:3
Alignment explanation
Indices: 58780822--58781105 Score: 172
Period size: 3 Copynumber: 95.7 Consensus size: 3
58780812 ATACTACTAC
* *
58780822 TAT TAC TAT TAT TAT TAT TAG TAT TAT TGA- TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
** * *
58780867 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CCT TAC TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
58780915 TAT TAG CAT TAT TAT CAT TAGT T-T TAT TGT TAT T-T TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * ** * * * *
58780959 TAA CAT TAT TAT TGG AAT TAT TAT TAA TGT TAT TAC TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
58781006 TTT TCT AAC TAT TAA TAT TAT T-T ATAT TAT TAT AAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * **
58781051 TAT T-T TCAT TAC CAC TAT TAT TA- TAT T-T CTCG TA- TACT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TA-T TAT TAT
58781095 TAT TAT TAT TA
1 TAT TAT TAT TA
58781106 CCCTGTTGTT
Statistics
Matches: 212, Mismatches: 54, Indels: 30
0.72 0.18 0.10
Matches are distributed among these distances:
2 15 0.07
3 189 0.89
4 8 0.04
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:58786307 original size:14 final size:15
Alignment explanation
Indices: 58786281--58786313 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
58786271 TACCAAATTG
*
58786281 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
58786296 GGAAGG-CCTTATCT
1 GGAAGGACCTTATCT
58786310 GGAA
1 GGAA
58786314 AAGCGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:58787370 original size:44 final size:43
Alignment explanation
Indices: 58787304--58787788 Score: 357
Period size: 44 Copynumber: 10.8 Consensus size: 43
58787294 ATGGCAAATA
* * **
58787304 TTATCTCCCTGAAGCTGTAGTGGAGCAGATTGAAGCCACTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-AATC
* * *
58787348 TTATC-CCCTTGAAGTTACAGTGGGGCAGATTGAAGAGACAAGTC
1 TTATCTCCC-TGAAGTTGCAGTGGAGCAGATTGAAGATACAA-TC
* * * *
58787392 TTATCTCCCTGAAGTTGCAGTAGAGCTGACTGAAGATAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AATC
*
58787437 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-AATC
* * * * *
58787481 TTTTCTCTCAGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AATC
* * * * *
58787526 TTATCTGCCGGAAGTTGCAGTGGAACAGGTTAAAGATACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAA-TC
* *
58787570 TTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C-AATC
* * * * * *
58787615 TTATTTTCCTGAAGTGGCAGTGGAACAGATTAAAGCTATAAGTTATAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT-A--CA-A--TC
* * * * * *
58787666 TTATCTCTCTGAAGTTGTAGTAGAGCAGA-T-CATAT-CAAACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC-AATC
* * * *
58787707 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAAATAAATCAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--A-CAATC
* *
58787753 TTATCTCCATGAAGTTGCAGTAGAGCAGATTGAAGA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
58787789 CCTTCTACAA
Statistics
Matches: 344, Mismatches: 74, Indels: 44
0.74 0.16 0.10
Matches are distributed among these distances:
41 27 0.08
42 1 0.00
43 11 0.03
44 130 0.38
45 104 0.30
46 37 0.11
47 5 0.01
48 2 0.01
49 2 0.01
50 1 0.00
51 24 0.07
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAATC
Found at i:58787459 original size:89 final size:89
Alignment explanation
Indices: 58787304--58787788 Score: 428
Period size: 89 Copynumber: 5.4 Consensus size: 89
58787294 ATGGCAAATA
* * * * ** * * *
58787304 TTATCTCCCTGAAGCTGTAGTGGAGCAGATTGAAGCCA-CTAATCTTATC-CCCTTGAAGTTACA
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCC-TGAAGTTGCA
* * *
58787367 GTGGGGCAGATTGAAGAGACAAGTC
65 GTGGAGCAGGTTAAAGAGACAAGTC
*
58787392 TTATCTCCCTGAAGTTGCAGTAGAGCTGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
* *
58787457 TGGAGCAGGTTGAAGATACGAA-TC
66 TGGAGCAGGTTAAAGAGAC-AAGTC
* * * * * *
58787481 TTTTCTCTCAGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTATCTGCCGGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
* *
58787546 TGGAACAGGTTAAAGATACAAGTC
66 TGGAGCAGGTTAAAGAGACAAGTC
* * * * * *
58787570 TTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTTCCTGAAGTGGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
* * * *
58787635 TGGAACAGATTAAAGCTATAAGTTATAGGTC
66 TGGAGCAGGTTAAAG-----AG--ACAAGTC
* * * * *
58787666 TTATCTCTCTGAAGTTGTAGTAGAGCAGA-T---CATATCAAACCTTATCTCCCTGAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
* *
58787727 TGGAGCAGGTTAAAAATAAATCAA-TC
66 TGGAGCAGGTT--AAAGAGA-CAAGTC
* *
58787753 TTATCTCCATGAAGTTGCAGTAGAGCAGATTGAAGA
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGA
58787789 CCTTCTACAA
Statistics
Matches: 323, Mismatches: 56, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
87 29 0.09
88 35 0.11
89 185 0.57
90 5 0.02
91 1 0.00
92 33 0.10
94 4 0.01
95 1 0.00
96 30 0.09
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (89 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAG
TGGAGCAGGTTAAAGAGACAAGTC
Found at i:58787495 original size:133 final size:129
Alignment explanation
Indices: 58787304--58787788 Score: 380
Period size: 133 Copynumber: 3.6 Consensus size: 129
58787294 ATGGCAAATA
* * ** * * * *
58787304 TTATCTCCCTGAAGCTGTAGTGGAGCAGATTGAAGCCACTAATCTTATCCCCTTGAAGTTACAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTTTCTCC-TGAAGTTGCAGT
*
58787369 GGGGCAGATTGAAGAGACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCTGACTGAAGATAGCAA
65 GGAGCAGATTGAAGAGACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGC-GA-TGAAGATA-CAA
58787434 ACC
127 ACC
* * *
58787437 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACGAATCTTTTCTCTCAGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTTTCTC-CTGAAGTTGCAGT
* * ** * * * * * *
58787502 GGAGCAGACTGAAGATAGCAAACCTTATCTGCCGGAAGTTGCAGTGGAACAGGTTAAAGATACAA
65 GGAGCAGATTGAAGAGA-CAAGTCTTATCTCCCTGAAGTTGCAGTAGAGC--GATGAAGATACAA
**
58787567 GTC
127 ACC
* * * *
58787570 TTATCTCCCTGAAGTTGCAATGGAGCAGACTGAAGATAGCAAATCTTATTTTCCTGAAGTGGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAATCTT-TTCTCCTGAAGTTGCAG
* * * * * * **
58787635 TGGAACAGATTAAAGCTATAAGTTATAGGTCTTATCTCTCTGAAGTTGTAGTAGAGC-A-GATCA
64 TGGAGCAGATTGAAG-----AG--ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCGATGAAGA
58787698 TATCAAACC
122 TA-CAAACC
* * * * * *
58787707 TTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAAATAAATCAATCTTATCTCCATGAAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA--AATCTTTTCTCC-TGAAGTTGCA
*
58787772 GTAGAGCAGATTGAAGA
63 GTGGAGCAGATTGAAGA
58787789 CCTTCTACAA
Statistics
Matches: 272, Mismatches: 64, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
133 107 0.39
134 63 0.23
135 5 0.02
136 5 0.02
137 40 0.15
138 28 0.10
139 1 0.00
140 22 0.08
141 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (129 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTTTCTCCTGAAGTTGCAGTG
GAGCAGATTGAAGAGACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCGATGAAGATACAAACC
Found at i:58789269 original size:3 final size:3
Alignment explanation
Indices: 58789257--58789513 Score: 118
Period size: 3 Copynumber: 85.7 Consensus size: 3
58789247 ATACTACTAC
* * *
58789257 TAT TAC TAT TAT TAT TAG TAT TAT TGA- TAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
** * * * *
58789302 TAT TAT TAT CCT TAC TAT TAT TAT TAG CAT TAT TAT CAT TAGT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * * *
58789347 TAT TGT TAT T-T TAT TAC TAT TAA CAT TAT TAT TGGAGT TAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T--A-T TAT TAT TAT
** * * * * *
58789394 TGC TAT TAC TAT TAT T-T TTT TCT TAC TAT TAA TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * *
58789438 TAT TAT TAT AAT TAC TAT TAT T-T TTT TCAT TAC CAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
**
58789482 TAT T-T CTCG TA- TACT TAT TAT TAT TAT TAT TA
1 TAT TAT -TAT TAT TA-T TAT TAT TAT TAT TAT TA
58789514 CCCTGTTGTT
Statistics
Matches: 186, Mismatches: 50, Indels: 36
0.68 0.18 0.13
Matches are distributed among these distances:
2 15 0.08
3 159 0.85
4 9 0.05
5 1 0.01
6 2 0.01
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:58792973 original size:24 final size:24
Alignment explanation
Indices: 58792945--58793002 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
58792935 TTTTTAGAAG
* *
58792945 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTACTAGTATAATAT
58792969 ATTTAGCATTTACTAGTATAATAT
1 ATTTAGCATTTACTAGTATAATAT
*
58792993 ATTTAACATT
1 ATTTAGCATT
58793003 GATTGGAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTACTAGTATAATAT
Found at i:58796652 original size:24 final size:24
Alignment explanation
Indices: 58796589--58796640 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
58796579 TTTCTAGAAG
*
58796589 ATTTAGTATTTATTAG-TGTAATAT
1 ATTTAGCATTTATTAGCT-TAATAT
58796613 ATTTAGCATTTATTAGCTTAATAT
1 ATTTAGCATTTATTAGCTTAATAT
58796637 ATTT
1 ATTT
58796641 GACATTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 25 0.96
25 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCTTAATAT
Found at i:58798830 original size:15 final size:16
Alignment explanation
Indices: 58798810--58798839 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58798800 ATTCAAGATC
58798810 AATTTA-CTTGTTTGA
1 AATTTATCTTGTTTGA
58798825 AATTTATCTTGTTTG
1 AATTTATCTTGTTTG
58798840 CATGATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.07, G:0.13, T:0.57
Consensus pattern (16 bp):
AATTTATCTTGTTTGA
Found at i:58804123 original size:41 final size:41
Alignment explanation
Indices: 58804066--58804221 Score: 242
Period size: 41 Copynumber: 3.8 Consensus size: 41
58804056 TTATATAAAA
* * *
58804066 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCGATACATTT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCCGATACATTT
*
58804107 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATACATTT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCCGATACATTT
* *
58804148 CACCGGCATAGAGCCTGCTAGGCATAAAGCCTGATACATTT
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCCGATACATTT
*
58804189 CACC-GAACAGAGCCTGCTAGGCATAAAGCCCGA
1 CACCGGCACAGAGCCTGCTAGGCATAAAGCCCGA
58804222 ACTTACAAAA
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 26 0.24
41 81 0.76
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.17
Consensus pattern (41 bp):
CACCGGCACAGAGCCTGCTAGGCATAAAGCCCGATACATTT
Found at i:58804444 original size:47 final size:47
Alignment explanation
Indices: 58804326--58804612 Score: 160
Period size: 47 Copynumber: 5.7 Consensus size: 47
58804316 TAACTTCAAA
* * * *
58804326 TAATTTATTTCAATGCATAACAAGTATATATATGCATTCAGCCATAGTT
1 TAATTCATTTCAATGTATAACAA-T-TATATATACATTCAGCCATAGAT
** * * * *
58804375 TAATTCATTTCTCTGCAAAACAATTACATATACATTCAGCTATAGAT
1 TAATTCATTTCAATGTATAACAATTATATATACATTCAGCCATAGAT
* *
58804422 TAATTCATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACCTAT
1 TAATTCATTTCAATGTATAAC--A-AT-TATATATACATTCAGCCAT-A--GAT
* * * * * * *
58804476 GTAATTTCAAATAATTTATTTCAATGCATAACAAATATATATAGATTCGGCCATAGCT
1 -TAA-TTC--AT--TTCA-AT--GT--ATAACAATTATATATACATTCAGCCATAGAT
** * * * *
58804534 TAATTCATTTCTCTGCATAACAATTACATATAAATTCAGCTATAGAT
1 TAATTCATTTCAATGTATAACAATTATATATACATTCAGCCATAGAT
*
58804581 TAATTCATTTCAATGTATAACAAATATATATA
1 TAATTCATTTCAATGTATAACAATTATATATA
58804613 TATACATTCG
Statistics
Matches: 181, Mismatches: 39, Indels: 38
0.70 0.15 0.15
Matches are distributed among these distances:
47 88 0.49
48 1 0.01
49 20 0.11
50 2 0.01
51 17 0.09
52 3 0.02
54 4 0.02
55 3 0.02
56 6 0.03
57 3 0.02
58 3 0.02
60 4 0.02
61 19 0.10
62 1 0.01
63 2 0.01
65 5 0.03
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (47 bp):
TAATTCATTTCAATGTATAACAATTATATATACATTCAGCCATAGAT
Found at i:58804483 original size:51 final size:51
Alignment explanation
Indices: 58804422--58804805 Score: 144
Period size: 47 Copynumber: 7.3 Consensus size: 51
58804412 AGCTATAGAT
*
58804422 TAATTCATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
1 TAATTAATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
* * * * * *
58804473 T-ATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATATATAGATTCGGCCATAGCT
1 TAAT-TAATTTC----AATGTA--T-AA--CA-AATATATATATATACATTCGGCCATAACC
* ** * * * * *
58804534 TAATTCATTTCTCTGCATAAC-AAT-TACATATA-A-ATTCAGCTATAGA-T
1 TAATTAATTTCAATGTATAACAAATATATATATATACATTCGGCCATA-ACC
*
58804581 TAATTCATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
1 TAATTAATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
* * * * * *
58804632 T-ATGTAATTTCAAATAATTTATTTCAACTCATAACAAATATATATACATTCAGCCATAGCT
1 TAAT-TAATTTC----AATGTA--T-AA--CA-AATATATATATATACATTCGGCCATAACC
* ** * * * * ***
58804693 TAATTCATTTCTCTGCATAAC--A-AT-TACATATACATTCAGCTATAGTT
1 TAATTAATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
* *
58804740 TAATTCATTTCAATGTATAACAAATATATATATATATACATTCAGCCATAACC
1 TAATTAATTTCAATGTATAAC-AA-ATATATATATATACATTCGGCCATAACC
58804793 T-ATGTAATTTCAA
1 TAAT-TAATTTCAA
58804806 ATAATTTATT
Statistics
Matches: 246, Mismatches: 50, Indels: 72
0.67 0.14 0.20
Matches are distributed among these distances:
47 66 0.27
48 5 0.02
49 14 0.06
50 8 0.03
51 24 0.10
52 6 0.02
53 27 0.11
54 4 0.02
55 12 0.05
57 6 0.02
58 4 0.02
60 4 0.02
61 62 0.25
62 4 0.02
ACGTcount: A:0.40, C:0.16, G:0.06, T:0.38
Consensus pattern (51 bp):
TAATTAATTTCAATGTATAACAAATATATATATATACATTCGGCCATAACC
Found at i:58804612 original size:161 final size:159
Alignment explanation
Indices: 58804290--58804867 Score: 973
Period size: 159 Copynumber: 3.6 Consensus size: 159
58804280 AACAATTCAC
* * * *
58804290 TATAT-TACATTTGGCCATAGCTTATGTAACTTCAAATAATTTATTTCAATGCATAACAAGTATA
1 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAA--ATA
* * *
58804354 TATATGCATTCAGCCATAGTTTAATTCATTTCTCTGCAAAACAATTACATATACATTCAGCTATA
64 TATATACATTCAGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATA
58804419 GATTAATTCATTTCAATGTATAACAAATATA
129 GATTAATTCATTTCAATGTATAACAAATATA
58804450 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATA
1 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATA
* * *
58804515 TATAGATTCGGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATAAATTCAGCTATAGA
66 TATACATTCAGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAGA
58804580 TTAATTCATTTCAATGTATAACAAATATA
131 TTAATTCATTTCAATGTATAACAAATATA
58804609 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAACT-CATAACAAATAT
1 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAA-TGCATAACAAATAT
58804673 ATATACATTCAGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAG
65 ATATACATTCAGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAG
*
58804738 TTTAATTCATTTCAATGTATAACAAATATATA
130 ATTAATTCATTTCAATGTATAAC-AA-ATATA
*
58804770 TATATATACATTCAGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATA
1 TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATA
58804835 TATACATTC-GACCATAGCTTAATTCATTTCTCT
66 TATACATTCAG-CCATAGCTTAATTCATTTCTCT
58804868 CAGATGTCGT
Statistics
Matches: 397, Mismatches: 15, Indels: 11
0.94 0.04 0.03
Matches are distributed among these distances:
159 239 0.60
160 10 0.03
161 148 0.37
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.38
Consensus pattern (159 bp):
TATATATACATTCGGCCATAACCTATGTAATTTCAAATAATTTATTTCAATGCATAACAAATATA
TATACATTCAGCCATAGCTTAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAGA
TTAATTCATTTCAATGTATAACAAATATA
Found at i:58804715 original size:47 final size:47
Alignment explanation
Indices: 58804646--58804771 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 47
58804636 TAATTTCAAA
*
58804646 TAATTTATTTCAACT-CATAACAAATATATATACATTCAGCCATAGCT
1 TAATTCATTTCAA-TGCATAACAAATATATATACATTCAGCCATAGCT
** * * * *
58804693 TAATTCATTTCTCTGCATAACAATTACATATACATTCAGCTATAGTT
1 TAATTCATTTCAATGCATAACAAATATATATACATTCAGCCATAGCT
*
58804740 TAATTCATTTCAATGTATAACAAATATATATA
1 TAATTCATTTCAATGCATAACAAATATATATA
58804772 TATATACATT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 1 0.02
47 65 0.98
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (47 bp):
TAATTCATTTCAATGCATAACAAATATATATACATTCAGCCATAGCT
Done.