Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 19 of 208
Found at i:7617704 original size:8 final size:8
Alignment explanation
Indices: 7617684--7617723 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
7617674 GTCCAAGTTT
7617684 TTTTTTCTG
1 TTTTTT-TG
7617693 TTTTTATT-
1 TTTTT-TTG
7617701 TTTTTTTG
1 TTTTTTTG
7617709 TTTTTTTG
1 TTTTTTTG
7617717 TTTTTTT
1 TTTTTTT
7617724 ATATATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 2 0.07
8 20 0.69
9 6 0.21
10 1 0.03
ACGTcount: A:0.03, C:0.03, G:0.07, T:0.88
Consensus pattern (8 bp):
TTTTTTTG
Found at i:7617704 original size:18 final size:18
Alignment explanation
Indices: 7617681--7617723 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7617671 TCAGTCCAAG
7617681 TTTTTTTTTCTGTTTTTA
1 TTTTTTTTTCTGTTTTTA
* * *
7617699 TTTTTTTTTGTTTTTTTG
1 TTTTTTTTTCTGTTTTTA
7617717 TTTTTTT
1 TTTTTTT
7617724 ATATATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.02, G:0.07, T:0.88
Consensus pattern (18 bp):
TTTTTTTTTCTGTTTTTA
Found at i:7617757 original size:30 final size:29
Alignment explanation
Indices: 7617723--7617788 Score: 109
Period size: 28 Copynumber: 2.3 Consensus size: 29
7617713 TTTGTTTTTT
7617723 TATATATTTTAGTAAATAAAAAAAA-TTA
1 TATATATTTTAGTAAATAAAAAAAAGTTA
*
7617751 TATATATTTTGGTAAATAAAAAAAAGTTA
1 TATATATTTTAGTAAATAAAAAAAAGTTA
7617780 TA-ATATTTT
1 TATATATTTT
7617789 GATAATTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 31 0.86
29 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (29 bp):
TATATATTTTAGTAAATAAAAAAAAGTTA
Found at i:7630838 original size:22 final size:22
Alignment explanation
Indices: 7630810--7630853 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7630800 AAACAAATAG
7630810 AATTTTCAATAATTTTTAAAAA
1 AATTTTCAATAATTTTTAAAAA
7630832 AATTTTCAATAATTTTTAAAAA
1 AATTTTCAATAATTTTTAAAAA
7630854 TTTTGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTTTCAATAATTTTTAAAAA
Found at i:7640971 original size:19 final size:19
Alignment explanation
Indices: 7640929--7640971 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7640919 TAATAAAATC
* *
7640929 ATTTT-TAATTATTTATTA
1 ATTTTATAAATATTTAATA
*
7640947 ACTTTATAAATATTTAATA
1 ATTTTATAAATATTTAATA
7640966 ATTTTA
1 ATTTTA
7640972 ATTTCTCATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTATAAATATTTAATA
Found at i:7641476 original size:13 final size:13
Alignment explanation
Indices: 7641458--7641491 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
7641448 ATATTTCATA
7641458 TCATCAAAACAAG
1 TCATCAAAACAAG
7641471 TCATCAAAACAAG
1 TCATCAAAACAAG
7641484 TCATCAAA
1 TCATCAAA
7641492 GCATCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.53, C:0.24, G:0.06, T:0.18
Consensus pattern (13 bp):
TCATCAAAACAAG
Found at i:7644056 original size:31 final size:32
Alignment explanation
Indices: 7643990--7644083 Score: 86
Period size: 31 Copynumber: 3.0 Consensus size: 32
7643980 AATAAATACC
* **** *
7643990 AAAAAATTTATTTTAAAAATTAAAACAAAAAT
1 AAAAAATTTATTTTAAAAAGTATTTTAAAATT
7644022 AAAAAATTTATTTTAAAAA-TATTTTAAAATT
1 AAAAAATTTATTTTAAAAAGTATTTTAAAATT
* *
7644053 AAAAAA--AATTTAAAAAAAGTATTTTAAAATT
1 AAAAAATTTATTT-TAAAAAGTATTTTAAAATT
7644084 TTAAAAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
29 4 0.08
30 5 0.09
31 25 0.47
32 19 0.36
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (32 bp):
AAAAAATTTATTTTAAAAAGTATTTTAAAATT
Found at i:7644056 original size:42 final size:43
Alignment explanation
Indices: 7643998--7644108 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
7643988 CCAAAAAATT
**
7643998 TATTTTAAAAATTAAAACAAAA-ATAAAAAATTTATTTTAAAAA
1 TATTTTAAAAATTAAAA-AAAATATAAAAAAAGTATTTTAAAAA
*
7644041 TATTTT-AAAATTAAAAAAAATTTAAAAAAAGTATTTT--AAA
1 TATTTTAAAAATTAAAAAAAATATAAAAAAAGTATTTTAAAAA
7644081 -ATTTTAAAAA-TAAATAAATAA-ATAAAAA
1 TATTTTAAAAATTAAA-AAA-AATATAAAAA
7644109 TTATTGTATT
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
39 9 0.15
40 16 0.27
41 6 0.10
42 23 0.38
43 6 0.10
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (43 bp):
TATTTTAAAAATTAAAAAAAATATAAAAAAAGTATTTTAAAAA
Found at i:7654935 original size:13 final size:13
Alignment explanation
Indices: 7654919--7654981 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
7654909 TTTAAACCGA
*
7654919 ACTTTTAAAAAAC
1 ACTTTTCAAAAAC
* *
7654932 ACTTCTCAAAAGC
1 ACTTTTCAAAAAC
*
7654945 ACTTTTC---AGC
1 ACTTTTCAAAAAC
7654955 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
7654968 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
7654981 A
1 A
7654982 ATGATTCATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
10 10 0.24
13 32 0.76
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:7654963 original size:23 final size:23
Alignment explanation
Indices: 7654931--7654975 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7654921 TTTTAAAAAA
*
7654931 CACTTCTCAAAAGCACTTTTCAG
1 CACTTCTCAAAAACACTTTTCAG
*
7654954 CACTTTTCAAAAACACTTTTCA
1 CACTTCTCAAAAACACTTTTCA
7654976 AAAACAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.33
Consensus pattern (23 bp):
CACTTCTCAAAAACACTTTTCAG
Found at i:7665078 original size:16 final size:18
Alignment explanation
Indices: 7665047--7665080 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
7665037 TATTGGATGC
7665047 AAAAGCATTCATTAAGTT
1 AAAAGCATTCATTAAGTT
7665065 AAAAG-ATT-ATTAAGTT
1 AAAAGCATTCATTAAGTT
7665081 TGATGGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (18 bp):
AAAAGCATTCATTAAGTT
Found at i:7670878 original size:2 final size:2
Alignment explanation
Indices: 7670873--7670903 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
7670863 GAGAGACACA
7670873 AG AG AG ATG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG A-G AG AG AG AG AG AG AG AG AG AG AG
7670904 TTACAGCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.48, T:0.03
Consensus pattern (2 bp):
AG
Found at i:7675704 original size:21 final size:23
Alignment explanation
Indices: 7675664--7675705 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
7675654 TCATGATTGT
7675664 TAAACATTTAGAACAAATAAATC
1 TAAACATTTAGAACAAATAAATC
*
7675687 TAAAC-TTTA-AACACATAAA
1 TAAACATTTAGAACAAATAAA
7675706 GATGTTCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 4 0.22
23 5 0.28
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAACATTTAGAACAAATAAATC
Found at i:7677465 original size:18 final size:18
Alignment explanation
Indices: 7677434--7677478 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
7677424 ATTCCCACTC
7677434 ATAATAATAATAATACTA
1 ATAATAATAATAATACTA
* *
7677452 ATAATTATATTAATACTA
1 ATAATAATAATAATACTA
*
7677470 ATATTAATA
1 ATAATAATA
7677479 CTTACTTCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAATAATAATACTA
Found at i:7677480 original size:12 final size:12
Alignment explanation
Indices: 7677438--7677478 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
7677428 CCACTCATAA
*
7677438 TAATAATAATAC
1 TAATAATAATAT
*
7677450 TAATAATTATAT
1 TAATAATAATAT
*
7677462 TAATACTAATAT
1 TAATAATAATAT
7677474 TAATA
1 TAATA
7677479 CTTACTTCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:7678245 original size:19 final size:19
Alignment explanation
Indices: 7678200--7678239 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7678190 TTTGTTTTGT
*
7678200 TTTTATTT-CTTTACTTTC
1 TTTTATTTACTTTACTTTA
7678218 TTTTATTTACTTTACTTTA
1 TTTTATTTACTTTACTTTA
7678237 TTT
1 TTT
7678240 CTTTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTTACTTTACTTTA
Found at i:7678399 original size:5 final size:5
Alignment explanation
Indices: 7678391--7678445 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
7678381 TATTTAATTT
* *
7678391 ATATA ATATA ATACA ATATA ATATA TTATATT ATATA ATA-A A-ATA ATAT-
1 ATATA ATATA ATATA ATATA ATATA --ATATA ATATA ATATA ATATA ATATA
7678440 ATATA A
1 ATATA A
7678446 AACATAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
3 1 0.02
4 8 0.20
5 28 0.68
7 4 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:7678420 original size:27 final size:25
Alignment explanation
Indices: 7678389--7678441 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
7678379 TCTATTTAAT
7678389 TTATATAATATAATACAATATAATATA
1 TTATATAATATAATA-AA-ATAATATA
*
7678416 TTATATTATATAATAAAATAATATA
1 TTATATAATATAATAAAATAATATA
7678441 T
1 T
7678442 ATAAAACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.36
26 2 0.08
27 14 0.56
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTATATAATATAATAAAATAATATA
Found at i:7678995 original size:17 final size:18
Alignment explanation
Indices: 7678952--7678995 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 18
7678942 GAGAATTATT
7678952 TTATTTTTATATGAAATAA
1 TTATTTTTATA-GAAATAA
7678971 TT-TGTTTTATA-AAATAA
1 TTAT-TTTTATAGAAATAA
7678988 TTATTTTT
1 TTATTTTT
7678996 CGAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 12 0.52
18 2 0.09
19 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
TTATTTTTATAGAAATAA
Found at i:7679935 original size:2 final size:2
Alignment explanation
Indices: 7679928--7679953 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7679918 ACATAGTTAA
7679928 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7679954 TCATTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7687365 original size:27 final size:27
Alignment explanation
Indices: 7687335--7687392 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
7687325 GCTATCTATA
7687335 AATAATCCCAGAATGCGCTTCGTTTTC
1 AATAATCCCAGAATGCGCTTCGTTTTC
* *
7687362 AATAGTCCCAGAATGCTCTTCGTTTTC
1 AATAATCCCAGAATGCGCTTCGTTTTC
7687389 AATA
1 AATA
7687393 TATACTTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (27 bp):
AATAATCCCAGAATGCGCTTCGTTTTC
Found at i:7708154 original size:24 final size:24
Alignment explanation
Indices: 7708126--7708176 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7708116 AACCTATAAC
7708126 GGGTAGCTCTAAAGAGCAATTAAT
1 GGGTAGCTCTAAAGAGCAATTAAT
7708150 GGGTAGCTCTAAAGAGCAATTAAT
1 GGGTAGCTCTAAAGAGCAATTAAT
7708174 GGG
1 GGG
7708177 AAGCACCAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (24 bp):
GGGTAGCTCTAAAGAGCAATTAAT
Found at i:7715516 original size:21 final size:21
Alignment explanation
Indices: 7715490--7715602 Score: 124
Period size: 21 Copynumber: 5.4 Consensus size: 21
7715480 CGTGTTTTAC
*
7715490 TTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAACTCTTACGAG
7715511 TTTCTGTT-AAGCTCTTACGAG
1 TTTCTGTTCAA-CTCTTACGAG
* *
7715532 CTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAACTCTTACGAG
* *
7715553 TTTTTGTTCAGCTCTTACGAG
1 TTTCTGTTCAACTCTTACGAG
*
7715574 CTTCTGTT-AAGCTCTTACGAG
1 TTTCTGTTCAA-CTCTTACGAG
7715595 CTTT-TGTT
1 -TTTCTGTT
7715603 GGCTCAGTTG
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
20 3 0.04
21 70 0.91
22 4 0.05
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (21 bp):
TTTCTGTTCAACTCTTACGAG
Found at i:7715550 original size:42 final size:42
Alignment explanation
Indices: 7715491--7715590 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
7715481 GTGTTTTACT
7715491 TTCTGTTCAACTCTTATGAGTTTCTGTTAAGCTCTTACGAGC
1 TTCTGTTCAACTCTTATGAGTTTCTGTTAAGCTCTTACGAGC
* *
7715533 TTCTGTTCAACTCTTATGAGTTTTTGTTCAGCTCTTACGAGC
1 TTCTGTTCAACTCTTATGAGTTTCTGTTAAGCTCTTACGAGC
7715575 TTCTGTT-AAGCTCTTA
1 TTCTGTTCAA-CTCTTA
7715591 CGAGCTTTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
41 2 0.04
42 53 0.96
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (42 bp):
TTCTGTTCAACTCTTATGAGTTTCTGTTAAGCTCTTACGAGC
Found at i:7715600 original size:42 final size:41
Alignment explanation
Indices: 7715491--7715602 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 41
7715481 GTGTTTTACT
7715491 TTCTGTTCAACTCTTATGAGTTTCTGTTAAGCTCTTACGAGC
1 TTCTGTTCAACTCTTATGAGTTT-TGTTAAGCTCTTACGAGC
*
7715533 TTCTGTTCAACTCTTATGAGTTTTTGTTCAGCTCTTACGAGC
1 TTCTGTTCAACTCTTATGAG-TTTTGTTAAGCTCTTACGAGC
*
7715575 TTCTGTT-AAGCTCTTACGAGCTTTTGTT
1 TTCTGTTCAA-CTCTTATGAG-TTTTGTT
7715603 GGCTCAGTTG
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
41 2 0.03
42 60 0.92
43 3 0.05
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.46
Consensus pattern (41 bp):
TTCTGTTCAACTCTTATGAGTTTTGTTAAGCTCTTACGAGC
Found at i:7717951 original size:50 final size:50
Alignment explanation
Indices: 7717893--7718128 Score: 359
Period size: 50 Copynumber: 4.7 Consensus size: 50
7717883 ATTTGGGTAA
* *
7717893 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
7717943 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* *
7717993 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* *
7718043 AGAGGTCTGCC--GTAAGACCATGTCTGGGACATGGCATGGGTACCGACATG
1 AGAGGTC--CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
**
7718093 AGTACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
7718129 TTTAGCATGT
Statistics
Matches: 171, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
49 2 0.01
50 140 0.82
51 27 0.16
52 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:7719972 original size:67 final size:67
Alignment explanation
Indices: 7719864--7719999 Score: 263
Period size: 67 Copynumber: 2.0 Consensus size: 67
7719854 TGAATCGGCA
7719864 ATCAAAAGTTTGGTACCTAACCTGCGCACGTGAAACAAAACCGTACGCTAAGTATAAACTCAGTG
1 ATCAAAAGTTTGGTACCTAACCTGCGCACGTGAAACAAAACCGTACGCTAAGTATAAACTCAGTG
7719929 GT
66 GT
*
7719931 ATCAAAAGTTTGGTACCTAACCTGCGCACGTGAAACAAAACCGTACGCTAAGTATAAACTTAGTG
1 ATCAAAAGTTTGGTACCTAACCTGCGCACGTGAAACAAAACCGTACGCTAAGTATAAACTCAGTG
7719996 GT
66 GT
7719998 AT
1 AT
7720000 TTCTATAATC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (67 bp):
ATCAAAAGTTTGGTACCTAACCTGCGCACGTGAAACAAAACCGTACGCTAAGTATAAACTCAGTG
GT
Found at i:7721462 original size:16 final size:15
Alignment explanation
Indices: 7721441--7721505 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 15
7721431 TTCTCCTTCC
7721441 TTTCTTTCCGTTTTCT
1 TTTCTTT-CGTTTTCT
*
7721457 TTTCTTTCTTTTTCT
1 TTTCTTTCGTTTTCT
* *
7721472 TTGTGTTTCGTTTCTAT
1 TT-TCTTTCGTTT-TCT
7721489 CTTTCTTTC-TTTTCT
1 -TTTCTTTCGTTTTCT
7721504 TT
1 TT
7721506 ATTCTTATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
14 2 0.05
15 11 0.28
16 18 0.45
17 7 0.17
18 2 0.05
ACGTcount: A:0.02, C:0.20, G:0.06, T:0.72
Consensus pattern (15 bp):
TTTCTTTCGTTTTCT
Found at i:7724319 original size:21 final size:21
Alignment explanation
Indices: 7724295--7724334 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7724285 TTTCGTTGCT
* *
7724295 TCTGCCTTGGATTCTGAATAG
1 TCTGACTTGGATTCCGAATAG
*
7724316 TCTGACTTTGATTCCGAAT
1 TCTGACTTGGATTCCGAAT
7724335 GCAATTCTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (21 bp):
TCTGACTTGGATTCCGAATAG
Found at i:7726207 original size:72 final size:72
Alignment explanation
Indices: 7726107--7726278 Score: 269
Period size: 72 Copynumber: 2.4 Consensus size: 72
7726097 AACAACAATG
* *
7726107 CTAAA-CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTT
1 CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
7726171 ATTTAT-
66 ATTTATA
* * *
7726177 GTGTAATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
1 CT-AAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
7726242 TATTTATA
65 TATTTATA
7726250 CTAAAT-TAGTTTTATCAATAGTTGTTTAT
1 CTAAATCTAGTTTTATCAATAGTTGTTTAT
7726279 ATATGATTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
70 1 0.01
71 24 0.26
72 65 0.71
73 1 0.01
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (72 bp):
CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
ATTTATA
Found at i:7728429 original size:118 final size:118
Alignment explanation
Indices: 7728221--7728463 Score: 450
Period size: 118 Copynumber: 2.1 Consensus size: 118
7728211 TAAAATGAAC
7728221 ATTTTATTTCTCAAAAATATTTTTTGACAGCAATACCAAACACTTAAAATTTTCAAAAGCACTTC
1 ATTTTATTTCTCAAAAATATTTTTTGACAGCAATACCAAACACTTAAAATTTTCAAAAGCACTTC
* *
7728286 TCAAAAGCAGTTTTTCATAGCACTTTTCAAAAACATTGCCAAACTAGTTCTAA
66 TCAAAAGCAGTTTTTCATAACACTTTTCAAAAACATTGCCAAACTAGCTCTAA
*
7728339 ATTTTATTTCTCAAAATTATTTTTTGACAGCAATACCAAACACTTAAAATTTTCAAAAGCACTTC
1 ATTTTATTTCTCAAAAATATTTTTTGACAGCAATACCAAACACTTAAAATTTTCAAAAGCACTTC
7728404 TCAAAAGCAGTTTTTCATAACACTTTTCAAAAACATTGCCAAACTAGCTCTAA
66 TCAAAAGCAGTTTTTCATAACACTTTTCAAAAACATTGCCAAACTAGCTCTAA
*
7728457 ATATTAT
1 ATTTTAT
7728464 CGGGTTGGAT
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 121 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.35
Consensus pattern (118 bp):
ATTTTATTTCTCAAAAATATTTTTTGACAGCAATACCAAACACTTAAAATTTTCAAAAGCACTTC
TCAAAAGCAGTTTTTCATAACACTTTTCAAAAACATTGCCAAACTAGCTCTAA
Found at i:7736831 original size:6 final size:6
Alignment explanation
Indices: 7736814--7736847 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7736804 TCTAAGACAG
* *
7736814 ATGGTG ATGGTA ATGGTA ATGCTA ATGGTA ATGG
1 ATGGTA ATGGTA ATGGTA ATGGTA ATGGTA ATGG
7736848 AAGGTATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (6 bp):
ATGGTA
Found at i:7747539 original size:13 final size:13
Alignment explanation
Indices: 7747501--7747539 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
7747491 TTCTTTATTA
*
7747501 CTTTTGAAAAGTG
1 CTTTTGAAAAGTT
*
7747514 CTTTTGAGAAGTT
1 CTTTTGAAAAGTT
7747527 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
7747540 TAGTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.44
Consensus pattern (13 bp):
CTTTTGAAAAGTT
Found at i:7748278 original size:22 final size:22
Alignment explanation
Indices: 7748250--7748314 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
7748240 ACTAATGAAT
*
7748250 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTAAAC
*
7748272 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTA-AAGTGCTAAAC
*
7748294 AGAGAGCACTAACGTGCTAAA
1 AGAGAGCACTAAAGTGCTAAA
7748315 TATCAGAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.15
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTAAAC
Found at i:7749285 original size:8 final size:8
Alignment explanation
Indices: 7749272--7749312 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
7749262 GTTTTTTTAT
7749272 ATATAATA
1 ATATAATA
7749280 ATATAATA
1 ATATAATA
*
7749288 TTATAATA
1 ATATAATA
7749296 ATATAATTA
1 ATATAA-TA
7749305 ATATAATA
1 ATATAATA
7749313 CTTATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:7749346 original size:28 final size:29
Alignment explanation
Indices: 7749277--7749347 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 29
7749267 TTTATATATA
*
7749277 ATAATATAATATTATAATAATATAATTAAT
1 ATAATAT-ATATTATAATAATATAATAAAT
*
7749307 ATAATACT-TATT-TATTAAGTA-AATAAAT
1 ATAATA-TATATTATAATAA-TATAATAAAT
7749335 ATAATATATATTA
1 ATAATATATATTA
7749348 ACTAAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
27 1 0.03
28 21 0.60
29 6 0.17
30 6 0.17
31 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
ATAATATATATTATAATAATATAATAAAT
Found at i:7760345 original size:12 final size:12
Alignment explanation
Indices: 7760328--7760352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7760318 AACAAACACT
7760328 AACTAACAATGC
1 AACTAACAATGC
7760340 AACTAACAATGC
1 AACTAACAATGC
7760352 A
1 A
7760353 GAAGACGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
AACTAACAATGC
Found at i:7762231 original size:51 final size:51
Alignment explanation
Indices: 7762128--7762249 Score: 138
Period size: 51 Copynumber: 2.4 Consensus size: 51
7762118 ATTAGAGTAT
* * *
7762128 ACAATCTATAAATGTTGAAAGTTTATTTTTTTGAAATAAAGACTAAAATGAC
1 ACAATATATAAATGTT-AAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
* * * * *
7762180 ACAAT-TAGTAAATGTTAAGGGTTATCTTTTTGAAATTAGGATTAAATTGAC
1 ACAATATA-TAAATGTTAAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
*
7762231 ATAATATATAAATGTTAAA
1 ACAATATATAAATGTTAAA
7762250 AATTAAAGAT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 44 0.75
52 15 0.25
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (51 bp):
ACAATATATAAATGTTAAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
Found at i:7764337 original size:22 final size:20
Alignment explanation
Indices: 7764312--7764355 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
7764302 TTTTAGCCAC
*
7764312 TAAAAAAATTACTTTTTTAGAG
1 TAAAAAAATCA-TTTTTTA-AG
7764334 TAAAAAAATCATTTTTTAAG
1 TAAAAAAATCATTTTTTAAG
7764354 TA
1 TA
7764356 TTGATTGGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 10 0.48
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (20 bp):
TAAAAAAATCATTTTTTAAG
Found at i:7764755 original size:44 final size:44
Alignment explanation
Indices: 7764681--7764765 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
7764671 TATCAAACTT
* * *
7764681 AATTTTTTTTGGTTATATAATTTCAAATCTTTTATGCTAAGTTA
1 AATTTCTTTTGATTATATAATTTCAAATCTTTCATGCTAAGTTA
**
7764725 AATTTCTTTTGATTATATAATATT-GGATCTTTCATGCTAAG
1 AATTTCTTTTGATTATATAAT-TTCAAATCTTTCATGCTAAG
7764766 ATAATAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (44 bp):
AATTTCTTTTGATTATATAATTTCAAATCTTTCATGCTAAGTTA
Found at i:7769417 original size:9 final size:9
Alignment explanation
Indices: 7769389--7769422 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7769379 ATTGAAATTT
7769389 TAAAAAAAA
1 TAAAAAAAA
7769398 TAGAAAAAAA
1 TA-AAAAAAA
*
7769408 TAAAATAAA
1 TAAAAAAAA
7769417 TAAAAA
1 TAAAAA
7769423 CCCTCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:7770791 original size:16 final size:17
Alignment explanation
Indices: 7770772--7770803 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7770762 AGGGGGTCTC
7770772 AACAGTACC-GAGCTCT
1 AACAGTACCTGAGCTCT
7770788 AACAGTACCTGAGCTC
1 AACAGTACCTGAGCTC
7770804 ACCCAGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (17 bp):
AACAGTACCTGAGCTCT
Found at i:7791710 original size:14 final size:14
Alignment explanation
Indices: 7791702--7791731 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7791692 AAATATATAT
7791702 AATATAATAAAGTA
1 AATATAATAAAGTA
*
7791716 AATATAATAAAATA
1 AATATAATAAAGTA
7791730 AA
1 AA
7791732 CAAGTAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AATATAATAAAGTA
Found at i:7791730 original size:22 final size:23
Alignment explanation
Indices: 7791688--7791740 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
7791678 CTTAATATTT
*
7791688 AAGTAAATATATATAATATAATA-
1 AAGTAAATATATATAAAATAA-AC
7791711 AAGTAAATATA-ATAAAATAAAC
1 AAGTAAATATATATAAAATAAAC
7791733 AAGTAAAT
1 AAGTAAAT
7791741 GAAACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 1 0.04
22 16 0.57
23 11 0.39
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (23 bp):
AAGTAAATATATATAAAATAAAC
Found at i:7794214 original size:41 final size:39
Alignment explanation
Indices: 7794154--7794265 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 39
7794144 TTTGACTACG
7794154 AGCCGATGAGACACTGGGTGTCAATCTATTATTTCAGATTA
1 AGCCGATGAGACACTGGGTGTCAA-CTATTATTTC-GATTA
** * * * *
7794195 ATTCGATGAGGCATTGGGTGCCAA-T-TTATTTCGATTT
1 AGCCGATGAGACACTGGGTGTCAACTATTATTTCGATTA
*
7794232 AGCCGATGAGTCACTGGGTGTCAACTTATTATTT
1 AGCCGATGAGACACTGGGTGTCAAC-TATTATTT
7794266 TGAATTATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
37 23 0.40
38 7 0.12
39 2 0.04
40 6 0.11
41 19 0.33
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (39 bp):
AGCCGATGAGACACTGGGTGTCAACTATTATTTCGATTA
Found at i:7795081 original size:35 final size:31
Alignment explanation
Indices: 7795046--7795107 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7795036 TGGTTGAATG
7795046 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
1 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
7795077 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
1 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
7795108 TGTAGGGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (31 bp):
AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
Found at i:7797104 original size:41 final size:42
Alignment explanation
Indices: 7796988--7797104 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
7796978 TTGCATAAAA
*
7796988 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTG-ATACATTT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAATACATTT
* * *
7797029 CACCGGCATAAAGCCTGCTAGACATCAAGTCTGAATTA-A-TT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAA-TACATTT
* * *
7797070 CACCGGCATCAAGCCTGCTAGGCATTAGGCCTGAA
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAA
7797105 AATCTCAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 61 0.94
42 2 0.03
43 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (42 bp):
CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAATACATTT
Found at i:7809115 original size:9 final size:9
Alignment explanation
Indices: 7809101--7809125 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7809091 CTTGGGTCAG
7809101 AACCTCTTC
1 AACCTCTTC
7809110 AACCTCTTC
1 AACCTCTTC
7809119 AACCTCT
1 AACCTCT
7809126 AATTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (9 bp):
AACCTCTTC
Found at i:7809213 original size:21 final size:21
Alignment explanation
Indices: 7809187--7809227 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7809177 ATCTGCTCAA
* *
7809187 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7809208 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7809228 TAGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7830088 original size:27 final size:27
Alignment explanation
Indices: 7830050--7830135 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
7830040 GCCTGATCAG
* *
7830050 GCCAATTAAATTGGCGGCACCAAAGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
7830077 GCCAAATAAATTGGTGGCACCAATGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
7830104 GCC-AATGTAATTGGCGGCACC-ATGGT
1 GCCAAAT-AAATTGGCGGCACCAATGGT
7830130 GCCAAA
1 GCCAAA
7830136 GGAAAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 11 0.21
27 41 0.79
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCAATGGT
Found at i:7830234 original size:19 final size:19
Alignment explanation
Indices: 7830207--7830276 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
7830197 TCAACTCATT
*
7830207 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
7830226 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
7830244 TTATCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
7830263 TTTTAATTTAATAA
1 TTTTAATTTAATAA
7830277 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:7830255 original size:37 final size:37
Alignment explanation
Indices: 7830212--7830283 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
7830202 TCATTTTTTT
7830212 ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
7830249 ATTTAATAACTCTATTTTAATTTAATAAACTATTA
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTA
7830284 AGTAATACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
Found at i:7830577 original size:19 final size:19
Alignment explanation
Indices: 7830550--7830621 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
7830540 TACTTAATAT
* *
7830550 TTTACTAAATTAAAATAGA
1 TTTATTAAATAAAAATAGA
* *
7830569 TTTATTAAATGAGAATAG-
1 TTTATTAAATAAAAATAGA
*
7830587 TTTATTAAATAAAAATTGA
1 TTTATTAAATAAAAATAGA
*
7830606 GTTATTAAATAAAAAT
1 TTTATTAAATAAAAAT
7830622 TGAGTCGAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.33
19 30 0.67
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.39
Consensus pattern (19 bp):
TTTATTAAATAAAAATAGA
Found at i:7830602 original size:37 final size:37
Alignment explanation
Indices: 7830545--7830615 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
7830535 AGTATTACTT
* * *
7830545 AATATTTTACTAAATTAAAATAGATTTATTAAATGAG
1 AATAGTTTACTAAATAAAAATAGAGTTATTAAATGAG
* *
7830582 AATAGTTTATTAAATAAAAATTGAGTTATTAAAT
1 AATAGTTTACTAAATAAAAATAGAGTTATTAAAT
7830616 AAAAATTGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.49, C:0.01, G:0.08, T:0.41
Consensus pattern (37 bp):
AATAGTTTACTAAATAAAAATAGAGTTATTAAATGAG
Found at i:7830622 original size:19 final size:19
Alignment explanation
Indices: 7830588--7830626 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7830578 TGAGAATAGT
7830588 TTATTAAATAAAAATTGAG
1 TTATTAAATAAAAATTGAG
7830607 TTATTAAATAAAAATTGAG
1 TTATTAAATAAAAATTGAG
7830626 T
1 T
7830627 CGAAGGGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATAAAAATTGAG
Found at i:7830878 original size:37 final size:37
Alignment explanation
Indices: 7830836--7830907 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
7830826 AAGTATTACT
7830836 TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
1 TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
7830873 TAATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 TAATAGTTTATTAAATTAAAATAGAGTTATTAAAT
7830908 AAAAAAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.42
Consensus pattern (37 bp):
TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
Found at i:7830912 original size:19 final size:19
Alignment explanation
Indices: 7830843--7830911 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
7830833 ACTTAATAGT
7830843 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
7830862 TTATTAAATGATAATAG-T
1 TTATTAAATTAAAATAGAG
7830880 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
7830899 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
7830912 AAATGAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:7831059 original size:293 final size:291
Alignment explanation
Indices: 7830503--7831263 Score: 1324
Period size: 293 Copynumber: 2.6 Consensus size: 291
7830493 TCAATTTTTT
* *
7830503 ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATATTTTACTAAATTAAAATAG
1 ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATAG
* * * * *
7830568 ATTTATTAAATGAGAATAGTTTATTAAATAAAAATTGAGTTATTAAATAAAAATTGAGTCGAAGG
66 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAGG
7830633 GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
131 GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
* *
7830698 GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATGTCAGGTCCTTGAAA
196 GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAAAA
*
7830763 CTGCAGATGGCCACTTAATTAGAATTCTCTC
261 CTGCAGATAGCCACTTAATTAGAATTCTCTC
7830794 ATTTAATAACTCTATTTTAATTTCAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
1 ATTTAATAACTCTATTTTAATTT-AAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
*
7830859 GAGTTATTAAATGATAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAAATGAGTTGAA
65 GAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAAT-AAAAAATGAGTTGAA
*
7830924 GGGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAATTTTA
129 GGGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTA
* *
7830989 GTGCGCAAGCAGCAGCAATTCACTTTCAAAATTTAAAATGGTAAATTTGCATATCAGGTCCTTAA
194 GTGCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAA
*
7831054 AACTGCAGATAGTCACTTAATTAGAATTCTCTC
259 AACTGCAGATAGCCACTTAATTAGAATTCTCTC
7831087 ATTTAATAACTCTATTTTAATTTAAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
1 ATTTAATAACTCTATTTTAATTT-AAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
7831152 GAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAG
65 GAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAG
* * * *
7831217 GGGAATAAAAAGAAAATAATAAACAATGAGGACTTAGAAAGCAATTA
130 GGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTA
7831264 CACACTTTTT
Statistics
Matches: 447, Mismatches: 21, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
291 23 0.05
292 143 0.32
293 281 0.63
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (291 bp):
ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATAG
AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAGG
GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAAAA
CTGCAGATAGCCACTTAATTAGAATTCTCTC
Found at i:7831172 original size:37 final size:37
Alignment explanation
Indices: 7831130--7831200 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
7831120 AGTATTACTT
7831130 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
7831167 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
7831201 AAAAAATGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.39
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:7831212 original size:19 final size:19
Alignment explanation
Indices: 7831136--7831204 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
7831126 ACTTAATAGT
7831136 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
7831155 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
7831173 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
7831192 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
7831205 AATGAGTTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:7831447 original size:25 final size:26
Alignment explanation
Indices: 7831393--7831447 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
7831383 TTGGTTTTTT
7831393 TTATATATTTTGATAAATTAAAAAAA
1 TTATATATTTTGATAAATTAAAAAAA
*
7831419 -TATAT-TTTTGGTAAA-TAAAAAAA
1 TTATATATTTTGATAAATTAAAAAAA
7831442 GTTATA
1 -TTATA
7831448 ACATTTTAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 8 0.31
24 9 0.35
25 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (26 bp):
TTATATATTTTGATAAATTAAAAAAA
Found at i:7833125 original size:252 final size:252
Alignment explanation
Indices: 7832671--7833185 Score: 1014
Period size: 252 Copynumber: 2.0 Consensus size: 252
7832661 ATATTCCAAT
*
7832671 TTTA-TTTTCTTATACATATTCTAATTTAATTAAACATATGTTTATTATACTCAAACCATTTTTT
1 TTTATTTTTATTATACATATTCTAATTTAATTAAACATATGTTTATTATACTCAAACCATTTTTT
7832735 GCTTCGCATTTTAAATATTTTGTATTATATTAATATCTTTTAGGTACATTCTTACAAAAACAATA
66 GCTTCGCATTTTAAATATTTTGTATTATATTAATATCTTTTAGGTACATTCTTACAAAAACAATA
7832800 GTACGTTATAATTATTCCTACAATAATTCACTTATATGCAATATTTTTATTGTATTATACATTAA
131 GTACGTTATAATTATTCCTACAATAATTCACTTATATGCAATATTTTTATTGTATTATACATTAA
7832865 GTTACAAGCACTATTAAATCAATTTTTTAAATATTCATTGTATTTTAGATCAATATC
196 GTTACAAGCACTATTAAATCAATTTTTTAAATATTCATTGTATTTTAGATCAATATC
7832922 TTTATTTTTATTATACATATTCTAATTTAATTAAACATATGTTTATTATACTCAAACCATTTTTT
1 TTTATTTTTATTATACATATTCTAATTTAATTAAACATATGTTTATTATACTCAAACCATTTTTT
7832987 GCTTCGCATTTTAAATATTTTGTATTATATTAATATCTTTTAGGTACATTCTTACAAAAACAATA
66 GCTTCGCATTTTAAATATTTTGTATTATATTAATATCTTTTAGGTACATTCTTACAAAAACAATA
7833052 GTACGTTATAATTATTCCTACAATAATTCACTTATATGCAATATTTTTATTGTATTATACATTAA
131 GTACGTTATAATTATTCCTACAATAATTCACTTATATGCAATATTTTTATTGTATTATACATTAA
7833117 GTTACAAGCACTATTAAATCAATTTTTTAAATATTCATTGTATTTTAGATCAATATC
196 GTTACAAGCACTATTAAATCAATTTTTTAAATATTCATTGTATTTTAGATCAATATC
7833174 TTTATTTTTATT
1 TTTATTTTTATT
7833186 TATCCTTATA
Statistics
Matches: 262, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
251 4 0.02
252 258 0.98
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (252 bp):
TTTATTTTTATTATACATATTCTAATTTAATTAAACATATGTTTATTATACTCAAACCATTTTTT
GCTTCGCATTTTAAATATTTTGTATTATATTAATATCTTTTAGGTACATTCTTACAAAAACAATA
GTACGTTATAATTATTCCTACAATAATTCACTTATATGCAATATTTTTATTGTATTATACATTAA
GTTACAAGCACTATTAAATCAATTTTTTAAATATTCATTGTATTTTAGATCAATATC
Found at i:7835473 original size:19 final size:19
Alignment explanation
Indices: 7835431--7835473 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7835421 TAAAAATTTA
*
7835431 AAAAAATTAAAACATAGTT
1 AAAAAATAAAAACATAGTT
*
7835450 TAAAAATAAAAACA-ATGTT
1 AAAAAATAAAAACATA-GTT
7835469 AAAAA
1 AAAAA
7835474 TGTTTTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAAAATAAAAACATAGTT
Found at i:7836427 original size:9 final size:9
Alignment explanation
Indices: 7836413--7836452 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7836403 GTAGTGATTC
*
7836413 AATTCGATT
1 AATTCGGTT
*
7836422 AATTCGGGT
1 AATTCGGTT
*
7836431 AATCCGGTT
1 AATTCGGTT
7836440 AATTCGGTT
1 AATTCGGTT
7836449 AATT
1 AATT
7836453 TTTAATTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7839515 original size:37 final size:37
Alignment explanation
Indices: 7839457--7839532 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
7839447 ACTAAGAGAG
*
7839457 GATGCTGTTCTACTTAGAAAGGTGATAGGTTACATTT
1 GATGCTGTTCTACTTAGAAAGGTCATAGGTTACATTT
7839494 GATGCTGTTCTACCTTA-AAAGGTCATAGGTTACATTT
1 GATGCTGTTCTA-CTTAGAAAGGTCATAGGTTACATTT
7839531 GA
1 GA
7839533 GAAGGTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
37 33 0.89
38 4 0.11
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (37 bp):
GATGCTGTTCTACTTAGAAAGGTCATAGGTTACATTT
Found at i:7847141 original size:27 final size:25
Alignment explanation
Indices: 7847099--7847149 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
7847089 ATAAATACAT
*
7847099 ATATATATATATATAGTAGCATATC
1 ATATATATAAATATAGTAGCATATC
*
7847124 ATATATATCAAATCATAGTAGGATAT
1 ATATATAT-AAAT-ATAGTAGCATAT
7847150 TCAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (25 bp):
ATATATATAAATATAGTAGCATATC
Found at i:7848172 original size:81 final size:81
Alignment explanation
Indices: 7848108--7848664 Score: 309
Period size: 81 Copynumber: 7.1 Consensus size: 81
7848098 GCAATACTCG
* * *
7848108 CCACCCGCTCAAGGTCGCACACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
*
7848173 CACTCAAACTCATCCA
66 CACTCAAACGCATCCA
* * * * * *
7848189 CCACCTACTCAAGGTTGCACACCACCTACTCAAGCTCATCCACCACCAACACAATTCACACCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
* * *
7848254 CACTCAAGCTCATCCT
66 CACTCAAACGCATCCA
* ** * ** * *
7848270 CCACCAAGACAA--TAC-C-CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCAC
1 CCACCCACTCAAGGT-CGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCAC
*
7848331 CCACTCAAACACATCCA
65 CCACTCAAACGCATCCA
* * * ** * ** * *
7848348 CCA-CCAATGCAA--T---AC-TCACC-GC-CAA-CTCAAACTCCACCAAGGCGATACCTGCCAC
1 CCACCCACT-CAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCAC
* * *
7848403 CCACTCAAGCTCATCCT
65 CCACTCAAACGCATCCA
* ** ** * * * **
7848420 CCACCAAAGCAATACTTGC-CACC-CACT-CA-AGGC-CATCCACCACCCACACAA-ACTCATCC
1 CCACCCACTCAA-GGTCGCACACCAC-CTACACAAGCTCATCCACCACCAACACAATAC-CCGCC
* *
7848479 -TCCAC-C-AATGCAATACCCA
63 ACCCACTCAAACGC-AT--CCA
* * * *
7848498 CCACCCACTCAA--ACACATCCACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCA
1 CCACCCACTCAAGGTCGCA--CACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCA
*
7848561 CCCACTCAAACTCATCCA
64 CCCACTCAAACGCATCCA
* * * * * *
7848579 CCACCTACTCAAGGTTGCACACCACCTACTCAAGCTCATCCTCCACCAAGACAATACCCACCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
* *
7848644 CACTCAAGCTCATCCA
66 CACTCAAACGCATCCA
7848660 CCACC
1 CCACC
7848665 AAGGCAATAC
Statistics
Matches: 363, Mismatches: 81, Indels: 64
0.71 0.16 0.13
Matches are distributed among these distances:
72 43 0.12
73 6 0.02
74 1 0.00
75 8 0.02
76 4 0.01
77 10 0.03
78 97 0.27
79 6 0.02
80 3 0.01
81 171 0.47
82 6 0.02
83 5 0.01
84 3 0.01
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.14
Consensus pattern (81 bp):
CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
CACTCAAACGCATCCA
Found at i:7848185 original size:39 final size:39
Alignment explanation
Indices: 7848127--7849204 Score: 422
Period size: 39 Copynumber: 27.7 Consensus size: 39
7848117 CAAGGTCGCA
* * *
7848127 CACCACCTACACAAGCTCATTCACCACCAACGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * *
7848166 CGCCACCCACTCAAACTCATCCACCACCTACTCAAGGTTGCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAA---TACC
* * * *
7848208 CACCACCTACTCAAGCTCATCCACCACCAACACAATTCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
*
7848247 CACCACCCACTCAAGCTCATCCTCCACCAA-GACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACG-CAATACC
* * *
7848286 CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * *
7848325 CACCACCCACTCAAACACATCCACCACCAATGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * *
7848364 CACCGCCAACTCAA----A--CTCCACCAAGGCGATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
** * * *
7848397 TGCCACCCACTCAAGCTCATCCTCCACCAAAGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
** * * *
7848436 TGCCACCCACTCAAGGC-CATCCACCACCCACACAA-ACT
1 CACCACCCACTCAA-GCTCATCCACCACCAACGCAATACC
* * * * *
7848474 CATCC-TCCAC-CAATGCAAT-ACCCACCACCCACTCAAACACATC
1 CA-CCACCCACTCAA-GC--TCATCCACCACCAACGC-AATAC--C
* * *
7848517 CACCACCTACACAAGCTCATTCACCACCAACGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * *
7848556 CGCCACCCACTCAAACTCATCCACCACCTACTCAAGGTTGCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAA---TACC
* *
7848598 CACCACCTACTCAAGCTCATCCTCCACCAA-GACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACG-CAATACC
* *
7848637 CACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * * * *
7848676 CGCCACCCACTCAAACACATCCACCGCCCACAC-AGACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * *
7848714 CATCC-TCCAC-CAAGGCAAT-ACCCACCACCCACTCAA-ACA
1 CA-CCACCCACTCAA-GC--TCATCCACCACCAACGCAATACC
* * *
7848753 CATCCA-CCAC-CAATGC-AATACTCACCGCCAACTCAA-A--
1 CA-CCACCCACTCAA-GCTCAT-C-CACCACCAACGCAATACC
* * ** * * * * *
7848790 CTCCACCTAGGCAA--T-ACCCGCCACCCACTCAAGCTCATC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAA--T-ACC
* * ** * * * * *
7848829 CTCCACCAAGGCAATACTC-GCCACCCCCTCAAGGCCAT--C
1 CACCACCCACTCAA-GCTCATCCA-CCAC-CAACGCAATACC
* * * *
7848868 CACCACCAACTCAAACTCCTCCA-CA--AAGGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * *
7848904 CGCCTCCCACTCAAGCTCATTCACCACCAACACAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * *
7848943 CGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * *
7848982 CACCACCCATTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * *
7849021 CGCCACCCACTCAGGGC-CATCCACCACCTACACTA-ACT
1 CACCACCCACTCA-AGCTCATCCACCACCAACGCAATACC
* * * *
7849059 CACC-CTCCAC-CAAGGC-AATGCCCACCACCCACTCAA-ACA
1 CACCAC-CCACTCAA-GCTCAT--CCACCACCAACGCAATACC
* *
7849098 CATCCA-CCAC-CAA-CTCAAACTCCTCCACCAAGGCAATACC
1 CA-CCACCCACTCAAGCTC--A-TCCACCACCAACGCAATACC
* * * *
7849138 CGCCACCCACTCAAGCACATCCACCACCAAGGCTATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* *
7849177 CACCACCTATTCAAGCTCATCCACCACC
1 CACCACCCACTCAAGCTCATCCACCACC
7849205 CACTCAAACA
Statistics
Matches: 800, Mismatches: 166, Indels: 146
0.72 0.15 0.13
Matches are distributed among these distances:
33 35 0.04
34 8 0.01
35 2 0.00
36 21 0.03
37 25 0.03
38 35 0.04
39 545 0.68
40 20 0.03
41 11 0.01
42 81 0.10
43 10 0.01
44 7 0.01
ACGTcount: A:0.32, C:0.47, G:0.07, T:0.13
Consensus pattern (39 bp):
CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
Found at i:7848191 original size:60 final size:60
Alignment explanation
Indices: 7848083--7848201 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 60
7848073 CCATTGAAAG
* * **
7848083 TCATCCACCACCAACGCAATACTCGCCACCCGCTCAAGGTCGCACACCACCTACACAAGC
1 TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTCGCACACCACCTACACAAGC
* * *
7848143 TCATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCATC-CACCACCTACTCAAG
1 TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTC-GCACACCACCTACACAAG
7848202 GTTGCACACC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.31, C:0.47, G:0.08, T:0.13
Consensus pattern (60 bp):
TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTCGCACACCACCTACACAAGC
Found at i:7848192 original size:21 final size:21
Alignment explanation
Indices: 7848168--7848354 Score: 92
Period size: 21 Copynumber: 9.3 Consensus size: 21
7848158 GCAATACCCG
*
7848168 CCACCCACTCAAACTCATCCA
1 CCACCAACTCAAACTCATCCA
* **
7848189 CCACCTACTCAAGGT--TGCACA
1 CCACCAACTCAAACTCAT-C-CA
* *
7848210 CCACCTACTCAAGCTCATCCA
1 CCACCAACTCAAACTCATCCA
* *
7848231 CCACCAACAC-AATTCA--CA
1 CCACCAACTCAAACTCATCCA
* * *
7848249 CCACCCACTCAAGCTCATCCT
1 CCACCAACTCAAACTCATCCA
** *
7848270 CCACCAAGAC-AA-T-ACCCA
1 CCACCAACTCAAACTCATCCA
* *
7848288 CCACCTACTCAAGCTCATCCA
1 CCACCAACTCAAACTCATCCA
**
7848309 CCACCAAGGCAATACTCA-CCA
1 CCACCAACTCAA-ACTCATCCA
*
7848330 -C-CC-ACTCAAACACATCCA
1 CCACCAACTCAAACTCATCCA
7848348 CCACCAA
1 CCACCAA
7848355 TGCAATACTC
Statistics
Matches: 120, Mismatches: 31, Indels: 30
0.66 0.17 0.17
Matches are distributed among these distances:
17 4 0.03
18 27 0.22
19 10 0.08
20 10 0.08
21 63 0.52
22 5 0.04
23 1 0.01
ACGTcount: A:0.34, C:0.47, G:0.05, T:0.14
Consensus pattern (21 bp):
CCACCAACTCAAACTCATCCA
Found at i:7848328 original size:18 final size:18
Alignment explanation
Indices: 7848307--7848386 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
7848297 CAAGCTCATC
*
7848307 CACCACCAAGGCAATACT
1 CACCACCAACGCAATACT
* * *
7848325 CACCACCCACTCAAACACAT
1 CACCACCAACGC-AATAC-T
*
7848345 CCACCACCAATGCAATACT
1 -CACCACCAACGCAATACT
* *
7848364 CACCGCCAACTCAA-ACT
1 CACCACCAACGCAATACT
7848381 CCACCA
1 -CACCA
7848387 AGGCGATACC
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
17 3 0.07
18 24 0.52
19 5 0.11
20 5 0.11
21 9 0.20
ACGTcount: A:0.38, C:0.46, G:0.05, T:0.11
Consensus pattern (18 bp):
CACCACCAACGCAATACT
Found at i:7848349 original size:60 final size:60
Alignment explanation
Indices: 7848285--7849345 Score: 440
Period size: 60 Copynumber: 18.1 Consensus size: 60
7848275 AAGACAATAC
* *
7848285 CCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * ** *
7848345 CCACCA-CCAATGCAA--T-A-CTCACCGCCAACTCAA-ACT--CCACCAAGGCGATAC-C-T
1 CCACCACCCACT-CAAGCTCATC-CACCACCAACGCAATACTCACCACCCACTC-AAACACAT
* * * ** *
7848398 --GCCACCCACTCAAGCTCATCCTCCACCAAAGCAATACTTGCCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAA-ACACAT
* * * * *
7848456 CCACCACCCACACAAACTCATCCTCCACCAATGCAATACCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7848516 CCACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7848576 CCACCACCTACTCAAGGT--TGCACACCACCTACTCAA-GCTCATCC-TCCAC-CAAGACA-AT
1 CCACCACCCACTCAAGCTCAT-C-CACCACCAACGCAATACTCA-CCACCCACTCAA-ACACAT
* *
7848634 ACCCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACAT
1 --CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * *
7848696 CCACCGCCCACAC-AGACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAG-CTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * ** *
7848756 CCACCA-CCAATGCAA--T-A-CTCACCGCCAACTCAA-ACT--CCACCTAGGC-AATAC--
1 CCACCACCCACT-CAAGCTCATC-CACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7848807 CCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGGC-CAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAA-ACACAT
* * * * * * * * *
7848867 CCACCACCAACTCAAACTCCTCCA-CA--AAGGCAATACCCGCCTCCCACTCAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * * * * *
7848924 TCACCACCAACACAA--T-A-CTCGCCACCCACTCAA-GCTCATCC-TCCAC-CAAGGCA-AT
1 CCACCACCCACTCAAGCTCATC-CACCACCAACGCAATACTCA-CCACCCACTCAA-ACACAT
* * * **
7848979 ACCCACCACCCATTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAGGGC-CAT
1 --CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCA-AACACAT
* * * * *
7849041 CCACCACCTACACT-AA-CTCACCCTCCACCAAGGCAATGCCCACCACCCACTCAAACACAT
1 CCACCACC--CACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * * *
7849101 CCACCACCAACTCAA--AC-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCACAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * **
7849158 CCACCA-CCA---AGGCT-ATACCCACCACCTATTCAAGCT-CATCCACCACCCACTCAAACACA
1 CCACCACCCACTCAAGCTCAT--CCACCACCAACGCAA--TAC-T-CACCACCCACTCAAACACA
7849217 T
60 T
* * * * * * * * *
7849218 CCACCGCCAACGCAA--T-ACCCGCCACCCACACAAGCT-CATCCGCCACCCACTCAAACCCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAA--TAC-T-CACCACCCACTCAAACACAT
* * * * * * * *
7849278 CCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
*
7849338 CCGCCACC
1 CCACCACC
7849346 AAGGCAATAC
Statistics
Matches: 756, Mismatches: 162, Indels: 166
0.70 0.15 0.15
Matches are distributed among these distances:
51 14 0.02
52 8 0.01
53 9 0.01
54 38 0.05
55 20 0.03
56 20 0.03
57 146 0.19
58 16 0.02
59 24 0.03
60 405 0.54
61 25 0.03
62 18 0.02
63 12 0.02
64 1 0.00
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (60 bp):
CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
Found at i:7848716 original size:99 final size:98
Alignment explanation
Indices: 7848598--7849303 Score: 475
Period size: 99 Copynumber: 7.0 Consensus size: 98
7848588 CAAGGTTGCA
* * *
7848598 CACCACCTACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCACCA
1 CACCACCCACTCAA-CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCA
*
7848663 CCAAGGCAATACTCGCCACCCACTCAAACACATC
65 CCAAGGCAATACTCACCACCCACTCAAACACATC
* * * * *
7848697 CACCGCCCACACAGACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCA
1 CACCACCCACTCA-ACTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCA
* * *
7848762 CCAATGCAATACTCACCGCCAACTCAAACTCCACCTAGGCAATACC
65 CCAAGGCAATACTCACCACCCACTC-AA----A-C-A--C-AT--C
* * *
7848808 CGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGGC-CATCCACC
1 CACCACCCACTCAA-CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAA-GCTCATCCACC
** * ** ** *
7848872 ACCAACTCAA-ACTCCTCCACAAAGGC-AATAC--C
64 ACCAAGGCAATACT-CACCACCCACTCAAACACATC
* * * * ** * *
7848904 CGCCTCCCACTCAAGCTCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCA
1 CACCACCCACTCAA-CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCA
* * * *
7848969 CCAAGGCAATACCCACCACCCATTCAAGCTCATC
65 CCAAGGCAATACTCACCACCCACTCAAACACATC
* ** * * * * * *
7849003 CACCACCAAGGCAATACTC-GCCACCCACTCAGGGCCAT--CCACCACCTACACT-AA-CTCACC
1 CACCACCCACTC-A-ACTCATCC-TCCAC-CAAGGCAATACCCGCCACC--CACTCAAGCTCATC
* * *
7849063 CTCCACCAAGGCAATGCCCACCACCCACTCAAACACATC
60 CACCACCAAGGCAATACTCACCACCCACTCAAACACATC
* * *
7849102 CACCACCAACTCAA-AC-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCACATCCACCAC
1 CACCACCCACTCAACTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCAC
* * * * * *
7849165 CAAGGCTATACCCACCACCTATTCAAGCTCATC
66 CAAGGCAATACTCACCACCCACTCAAACACATC
* * * * * *
7849198 CACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCCGCCA
1 CACCACCCACTC-AACTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCA
* **
7849263 CCCACTCAA-ACCCATCCACCACCCACTCAAACACATC
65 CCAAGGCAATA--C-T-CACCACCCACTCAAACACATC
7849300 CACC
1 CACC
7849304 GCCAACGCAA
Statistics
Matches: 474, Mismatches: 95, Indels: 73
0.74 0.15 0.11
Matches are distributed among these distances:
94 11 0.02
95 8 0.02
96 127 0.27
97 7 0.01
98 4 0.01
99 188 0.40
100 14 0.03
101 11 0.02
102 21 0.04
103 1 0.00
104 1 0.00
105 2 0.00
106 1 0.00
108 1 0.00
109 3 0.01
110 4 0.01
111 69 0.15
112 1 0.00
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.12
Consensus pattern (98 bp):
CACCACCCACTCAACTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCAC
CAAGGCAATACTCACCACCCACTCAAACACATC
Found at i:7848760 original size:120 final size:119
Alignment explanation
Indices: 7848399--7849345 Score: 486
Period size: 120 Copynumber: 8.0 Consensus size: 119
7848389 GCGATACCTG
* * *
7848399 CCACCCACTCAAGCTCATCCTCCACCAAAGCAATACTTGCCACCCACTCAAGGCCATCCACCACC
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAA-ACCATCCACCACC
* *
7848464 CACACAAACTCATCCTCCACCAATGCAATACCCACCACCCACTCAAACACATCCA
65 CACACAGACTCATCCTCCACCAACGCAATACCCACCACCCACTCAAACACATCCA
* * * * *
7848519 CCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCATCCACCACC
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAAAC-CATCCACCACC
* * ** * * * * * *
7848584 TACTCAAGGTTGCA--CACCACCTACTCAA-GCTCATCC-TCCAC-CAAGACA-ATACCCA
65 CACAC-AGACT-CATCCTCCACCAACGCAATACCCA-CCACCCACTCAA-ACACAT--CCA
* *
7848639 CCACCCACTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCGCC
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAAAC-CATCCACCACC
*
7848704 CACACAGACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCA
65 CACACAGACTCATCCTCCACCAACGCAATACCCACCACCCACTCAAACACATCCA
* * ** * ** *
7848759 CCA-CCAATGCAA--T-A-CTCACCGCCAACTCAA-ACT--CCACCTAGGCAATA-C--CCGCCA
1 CCACCCACT-CAAGCTCATC-CACCACCAAAGCAATACTCGCCACCCACTCAA-ACCATCCACCA
* * * * * *
7848813 CCCACTCA-AGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGGC-CATCCA
63 CCCACACAGA-CTCATCCTCCACCAACGCAATACCCACCACCCACTCAA-ACACATCCA
* * * * * * * *
7848870 CCACCAACTCAAACTCCTCCA-CA--AAGGCAATACCCGCCTCCCACTCAAGCTCATTCACCACC
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAAAC-CATCCACCACC
* * * * * * * *
7848932 AACACA-A-T-A-CTCGCCACCCACTCAA-GCTCATCC-TCCAC-CAAGGCA-ATACCCA
65 CACACAGACTCATC-CTCCACCAACGCAATACCCA-CCACCCACTCAA-ACACAT--CCA
* * **
7848984 CCACCCATTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAGGGCCATCCACCACC
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCA-AACCATCCACCACC
* * * *
7849049 TACACTA-ACTCACCCTCCACCAAGGCAATGCCCACCACCCACTCAAACACATCCA
65 CACAC-AGACTCATCCTCCACCAACGCAATACCCACCACCCACTCAAACACATCCA
* * * * * *
7849104 CCACCAACTCAA--AC-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCACATCCACCA--
1 CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAAAC-CATCCACCACC
* * * ** *
7849164 C-CA-AGGCT-ATACCCACCACCTATTCAAGCTCATCCACCACCCACTCAAACACATCCA
65 CACACAGACTCAT--CCTCCACCAACGCAA--T-ACCCACCACCCACTCAAACACATCCA
* * * * ** *
7849221 CCGCCAACGCAATAC-CCGCCACC-CACACAAGCTCAT-C-CGCCACCCACTCAAACCCATCCAC
1 CCACCCACTCAA-GCTCATCCACCAC-CA-AAGC-AATACTCGCCACCCACTCAAA-CCATCCAC
* * * * * * * * * *
7849282 CACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCCG
61 CACCCACACAGACTCATCCTCCACCAACGCAATACCCACCACCCACTCAAACACATCCA
7849341 CCACC
1 CCACC
7849346 AAGGCAATAC
Statistics
Matches: 631, Mismatches: 129, Indels: 134
0.71 0.14 0.15
Matches are distributed among these distances:
110 1 0.00
111 63 0.10
112 16 0.03
113 12 0.02
114 65 0.10
115 6 0.01
116 7 0.01
117 133 0.21
118 13 0.02
119 21 0.03
120 234 0.37
121 29 0.05
122 15 0.02
123 12 0.02
124 2 0.00
125 2 0.00
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.12
Consensus pattern (119 bp):
CCACCCACTCAAGCTCATCCACCACCAAAGCAATACTCGCCACCCACTCAAACCATCCACCACCC
ACACAGACTCATCCTCCACCAACGCAATACCCACCACCCACTCAAACACATCCA
Found at i:7848860 original size:72 final size:72
Alignment explanation
Indices: 7848718--7848853 Score: 200
Period size: 72 Copynumber: 1.9 Consensus size: 72
7848708 CAGACTCATC
* *
7848718 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAATGCAATACTCACCGCCA
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
7848783 ACTCAAA
66 ACTCAAA
* * * * * *
7848790 CTCCACCTAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACC
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACC
7848854 CCCTCAAGGC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.32, C:0.47, G:0.08, T:0.12
Consensus pattern (72 bp):
CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
ACTCAAA
Found at i:7848905 original size:96 final size:96
Alignment explanation
Indices: 7848798--7848972 Score: 271
Period size: 96 Copynumber: 1.8 Consensus size: 96
7848788 AACTCCACCT
* ** *
7848798 AGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGG
1 AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAA-G
7848863 C-CATCCACCACCAACTCAAACTCCTCCACAA
65 CTCATCCACCACCAACTCAAACTCCTCCACAA
* *
7848894 AGGCAATACCCGCCTCCCACTCAAGCTCATTCACCACCAACACAATACTCGCCACCCACTCAAGC
1 AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGC
*
7848959 TCATCCTCCACCAA
66 TCATCCACCACCAA
7848973 GGCAATACCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
95 2 0.03
96 69 0.97
ACGTcount: A:0.30, C:0.47, G:0.09, T:0.14
Consensus pattern (96 bp):
AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGC
TCATCCACCACCAACTCAAACTCCTCCACAA
Found at i:7849106 original size:21 final size:21
Alignment explanation
Indices: 7849080--7849303 Score: 121
Period size: 21 Copynumber: 11.2 Consensus size: 21
7849070 AAGGCAATGC
7849080 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
*
7849101 CCACCACCAACTC-AA-AC-T
1 CCACCACCCACTCAAACACAT
* * ** *
7849119 CCTCCACCAAGGC-AATAC--
1 CCACCACCCACTCAAACACAT
* *
7849137 CCGCCACCCACTCAAGCACAT
1 CCACCACCCACTCAAACACAT
* ** * *
7849158 CCACCACCAAGGC-TATAC--
1 CCACCACCCACTCAAACACAT
* * * *
7849176 CCACCACCTATTCAAGCTCAT
1 CCACCACCCACTCAAACACAT
7849197 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
* * * *
7849218 CCACCGCCAACGC-AATAC--
1 CCACCACCCACTCAAACACAT
* * * *
7849236 CCGCCACCCACACAAGCTCAT
1 CCACCACCCACTCAAACACAT
* *
7849257 CCGCCACCCACTCAAACCCAT
1 CCACCACCCACTCAAACACAT
7849278 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
7849299 CCACC
1 CCACC
7849304 GCCAACGCAA
Statistics
Matches: 149, Mismatches: 44, Indels: 20
0.70 0.21 0.09
Matches are distributed among these distances:
18 41 0.28
19 10 0.07
20 8 0.05
21 90 0.60
ACGTcount: A:0.33, C:0.51, G:0.05, T:0.11
Consensus pattern (21 bp):
CCACCACCCACTCAAACACAT
Found at i:7849183 original size:156 final size:156
Alignment explanation
Indices: 7848962--7849283 Score: 396
Period size: 156 Copynumber: 2.1 Consensus size: 156
7848952 CTCAAGCTCA
* * * *
7848962 TCCTCCACCAAGGCAATACCCACCACCCATTCAAGCTCATCCACCACCAAGGCAATACTCGCCAC
1 TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
* * * * * * *
7849027 CCACTCAGGGC-CATCCACCACCTACACTAACTCACCCTCCACCAAGGCAATGCCCACCACCCAC
66 CCACTCA-AGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCAC
*
7849091 TCAAACACATCCACCACCAACTCAAAC
130 ACAAACACATCCACCACCAACTCAAAC
* *
7849118 TCCTCCACCAAGGCAATACCCGCCACCCACTCAAGCACATCCACCACCAAGGCTATACCCACCAC
1 TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
* * * * * *
7849183 CTATTCAAGCTCATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACA
66 CCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCACA
* * * *
7849248 CAAGCTCATCCGCCACCCACTCAAAC
131 CAAACACATCCACCACCAACTCAAAC
7849274 -CCATCCACCA
1 TCC-TCCACCA
7849284 CCCACTCAAA
Statistics
Matches: 140, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
155 4 0.03
156 136 0.97
ACGTcount: A:0.32, C:0.49, G:0.07, T:0.12
Consensus pattern (156 bp):
TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
CCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCACA
CAAACACATCCACCACCAACTCAAAC
Found at i:7849243 original size:39 final size:39
Alignment explanation
Indices: 7849200--7849406 Score: 191
Period size: 39 Copynumber: 5.2 Consensus size: 39
7849190 AGCTCATCCA
*
7849200 CCACCCACTCAAACACATCCACCGCCAACGCAATACCCG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * * * * * *
7849239 CCACCCACACAAGCTCATCCGCCACCCACTCAA-ACCCATCCA
1 CCACCCACTCAAACACATCCACCACCAACGCAATA--C--CCG
*
7849281 CCACCCACTCAAACACATCCACCGCCAACGCAATACCCG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * * * * * *
7849320 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCA
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * * *
7849359 CCACTCATTCAAACACATCCACCACCAATGCAATACACG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
7849398 CCACCCACT
1 CCACCCACT
7849407 AAAGGTTGTG
Statistics
Matches: 128, Mismatches: 35, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
38 1 0.01
39 96 0.75
40 1 0.01
41 1 0.01
42 28 0.22
43 1 0.01
ACGTcount: A:0.33, C:0.50, G:0.07, T:0.10
Consensus pattern (39 bp):
CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
Found at i:7849279 original size:81 final size:80
Alignment explanation
Indices: 7849194--7849405 Score: 313
Period size: 81 Copynumber: 2.7 Consensus size: 80
7849184 TATTCAAGCT
7849194 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
1 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
* *
7849259 GCCACCCACTCAA-A
66 GCCACCAACGCAATA
7849273 CCCATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
1 --CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
*
7849338 CCGCCACCAAGGCAATA
64 CCGCCACCAACGCAATA
* * * * *
7849355 C-T-CACCACTCATTCAAACACATCCACCACCAATGCAATACACGCCACCCAC
1 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCAC
7849406 TAAAGGTTGT
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 44 0.36
79 1 0.01
80 1 0.01
81 75 0.61
82 1 0.01
ACGTcount: A:0.33, C:0.50, G:0.07, T:0.10
Consensus pattern (80 bp):
CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
GCCACCAACGCAATA
Found at i:7849341 original size:21 final size:21
Alignment explanation
Indices: 7849236--7849345 Score: 91
Period size: 21 Copynumber: 5.4 Consensus size: 21
7849226 AACGCAATAC
*
7849236 CCGCCACCCACACAAGCTCAT
1 CCGCCACCCACACAAACTCAT
* *
7849257 CCGCCACCCACTCAAACCCAT
1 CCGCCACCCACACAAACTCAT
* * *
7849278 CCACCACCCACTCAAACACAT
1 CCGCCACCCACACAAACTCAT
* * * * *
7849299 CCACCGCCAACGC-AA-T-AC
1 CCGCCACCCACACAAACTCAT
*
7849317 CCGCCACCCACACAAGCTCAT
1 CCGCCACCCACACAAACTCAT
7849338 CCGCCACC
1 CCGCCACC
7849346 AAGGCAATAC
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
18 10 0.14
19 1 0.01
20 3 0.04
21 56 0.80
ACGTcount: A:0.30, C:0.55, G:0.07, T:0.08
Consensus pattern (21 bp):
CCGCCACCCACACAAACTCAT
Found at i:7849423 original size:99 final size:100
Alignment explanation
Indices: 7849320--7849510 Score: 260
Period size: 99 Copynumber: 1.9 Consensus size: 100
7849310 GCAATACCCG
*
7849320 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACTC-ATTCAAACACATCCACCAC
1 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCAC-CAACTCAAACACATCCACCAC
**
7849384 CAATGCAATACACGCCACCCACT-AAAGGTTGTGAA
65 CAACCCAATACACGCCACCCACTCAAAGGTTGTGAA
* * * * * *
7849419 CCACCTACTCAAGCTCATCCTCCACCGAGGCAATACTCACCTCCAACTCAAACTCATCCACCACC
1 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCAACTCAAACACATCCACCACC
* *
7849484 AACCCAATACTCGCCGCCCACTCAAAG
66 AACCCAATACACGCCACCCACTCAAAG
7849511 TCATCCACCA
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
98 1 0.01
99 74 0.94
100 4 0.05
ACGTcount: A:0.33, C:0.43, G:0.09, T:0.15
Consensus pattern (100 bp):
CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCAACTCAAACACATCCACCACC
AACCCAATACACGCCACCCACTCAAAGGTTGTGAA
Found at i:7849548 original size:39 final size:39
Alignment explanation
Indices: 7849418--7849555 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 39
7849408 AAGGTTGTGA
* * *
7849418 ACCACCTACTC-AAGCTCATCCTCCACCGAGGCAATACTC
1 ACCACCTACTCAAAG-TCATCCACCACCAACGCAATACTC
* * * *
7849457 ACCTCCAACTCAAACTCATCCACCACCAACCCAATACTC
1 ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
* * * * *
7849496 GCCGCCCACTCAAAGTCATCCACCACCAATGCAGTACTC
1 ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
*
7849535 ACCACCTACTCAAATTCATCC
1 ACCACCTACTCAAAGTCATCC
7849556 GCAGCCTCCT
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 78 0.98
40 2 0.03
ACGTcount: A:0.31, C:0.45, G:0.07, T:0.17
Consensus pattern (39 bp):
ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
Found at i:7854342 original size:21 final size:21
Alignment explanation
Indices: 7854316--7854356 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7854306 AGACGAGCAA
* *
7854316 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7854337 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7854357 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7859969 original size:21 final size:21
Alignment explanation
Indices: 7859943--7859983 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7859933 ATCTGCTCAA
* *
7859943 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7859964 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7859984 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7868142 original size:16 final size:16
Alignment explanation
Indices: 7868121--7868155 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
7868111 ATTTTAATAT
7868121 TTTTATCTAAACTAAA
1 TTTTATCTAAACTAAA
7868137 TTTTATCTAAACTAAA
1 TTTTATCTAAACTAAA
7868153 TTT
1 TTT
7868156 GAACAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTTATCTAAACTAAA
Found at i:7874832 original size:9 final size:9
Alignment explanation
Indices: 7874818--7874854 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7874808 TATAGTTTGA
7874818 TATTCGAAT
1 TATTCGAAT
7874827 TATTCGAAT
1 TATTCGAAT
*
7874836 TATTCGAGT
1 TATTCGAAT
7874845 TATTCGAAT
1 TATTCGAAT
7874854 T
1 T
7874855 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7875724 original size:13 final size:13
Alignment explanation
Indices: 7875703--7875768 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
7875693 TTTAAACCAA
* *
7875703 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
*
7875716 ACTTTTCAAATGC
1 ACTTTTCAAAAGC
* *
7875729 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
7875742 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
7875755 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
7875768 A
1 A
7875769 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7887631 original size:125 final size:126
Alignment explanation
Indices: 7887209--7887774 Score: 893
Period size: 126 Copynumber: 4.5 Consensus size: 126
7887199 AAAATCAAAA
* * * *
7887209 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGATGCACTTTTGCTACAATAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7887274 TCTTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAG
*
7887335 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * *
7887400 TCATGGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAAACGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAG
* * * *
7887461 CAGGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCATGGACGTGCTTTTGCTACAGTTGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7887526 TCCTGGAAAAAATAATTTTGAGTTGACGTTTCTGAGAAAATAGTAT-AAAAACGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAG
* *
7887586 CAGGATGTTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACTCGCTTTTGCTACAGTAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7887651 TCCTGGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAATAT-AAAAACGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAG
** * * *
7887711 CAGGATGCTTTATGACCAGAACTTGTGAAATCGCGCCCACGCGGACGCGCTTTTGCTACAGTAG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
7887775 CATGTTTGGG
Statistics
Matches: 406, Mismatches: 34, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
125 186 0.46
126 220 0.54
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (126 bp):
CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAG
Found at i:7887677 original size:251 final size:251
Alignment explanation
Indices: 7887209--7887774 Score: 902
Period size: 251 Copynumber: 2.3 Consensus size: 251
7887199 AAAATCAAAA
* * *
7887209 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGATGCACTTTTGCTACAATAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTAGG
* * *
7887274 TCTTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAGCAGG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTTCAAGCAGG
7887339 ATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGGTCAT
131 ATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGGTCAT
*
7887404 GGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAAACGCTTCAAG
196 GGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAATAT-AAAAACGCTTCAAG
* * *
7887461 CAGGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCATGGACGTGCTTTTGCTACAGTTGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTAGG
*
7887526 TCCTGGAAAAAATAATTTTGAGTTGACGTTTCTGAGAAAATAGTAT-AAAAACGCTTCAAGCAGG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTTCAAGCAGG
* *
7887590 ATGTTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACT-CGCTTTTGCTACAGTAGGTCC
131 ATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGA-TGCGCTTTTGCTACAGTAGGTCA
* * *
7887654 TGGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAATATAAAAACGCTTCAAG
195 TGGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAATATAAAAACGCTTCAAG
** * * **
7887711 CAGGATGCTTTATGACCAGAACTTGTGAAATCGCGCCCACGCGGACGCGCTTTTGCTACAGTAG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTAG
7887775 CATGTTTGGG
Statistics
Matches: 288, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
250 69 0.24
251 116 0.40
252 103 0.36
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (251 bp):
CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTGCTACAGTAGG
TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAACGCTTCAAGCAGG
ATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGGTCAT
GGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAATATAAAAACGCTTCAAG
Found at i:7890883 original size:28 final size:26
Alignment explanation
Indices: 7890857--7890920 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 26
7890847 CCAGTTAAGG
7890857 GTTAAGGTTAGGGTTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTAGGGTTTTTAA
*
7890883 GTTAA-G-T--GTTTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTAGGGTTTTTAA
7890905 GTTAAAGGTTAGGGTT
1 GTT-AAGGTTAGGGTT
7890921 TTTAAGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
22 17 0.55
23 2 0.06
24 2 0.06
25 2 0.06
26 5 0.16
27 3 0.10
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (26 bp):
GTTAAGGTTAGGGTTAGGGTTTTTAA
Found at i:7890901 original size:21 final size:20
Alignment explanation
Indices: 7890858--7890937 Score: 106
Period size: 21 Copynumber: 3.8 Consensus size: 20
7890848 CAGTTAAGGG
*
7890858 TTAAGGTTAGGGTTAGGGTTT
1 TTAA-GTTAAGGTTAGGGTTT
7890879 TTAAGTTAAGTGTTTAGGGTTT
1 TTAAGTTAAG-G-TTAGGGTTT
7890901 TTAAGTTAAAGGTTAGGGTTT
1 TTAAGTT-AAGGTTAGGGTTT
7890922 TTAAGTTAAGGGTTAG
1 TTAAGTTAA-GGTTAG
7890938 CATTTAGGGT
Statistics
Matches: 54, Mismatches: 1, Indels: 8
0.86 0.02 0.13
Matches are distributed among these distances:
20 7 0.13
21 27 0.50
22 17 0.31
23 3 0.06
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (20 bp):
TTAAGTTAAGGTTAGGGTTT
Found at i:7891058 original size:22 final size:22
Alignment explanation
Indices: 7890984--7891049 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
7890974 GGTTTTTAAA
*
7890984 TTAAGTCAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
** *
7891006 TTAAGTTAAAAGTTTAAGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
7891028 TTAAGTTAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
7891050 GTCAATTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
TTAAGTTAAGGGTTTAGGGTTT
Found at i:7891616 original size:18 final size:18
Alignment explanation
Indices: 7891590--7891632 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7891580 GACTCGGAAA
* *
7891590 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
7891608 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
7891626 AGGAAAC
1 AGGAAAC
7891633 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:7892256 original size:14 final size:14
Alignment explanation
Indices: 7892239--7892270 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7892229 TTATATACAT
7892239 AATAGTAAATACTA
1 AATAGTAAATACTA
*
7892253 AATATTAAATACTA
1 AATAGTAAATACTA
7892267 AATA
1 AATA
7892271 CCAATCGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (14 bp):
AATAGTAAATACTA
Found at i:7894227 original size:54 final size:54
Alignment explanation
Indices: 7894163--7894267 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
7894153 TTTACATGAA
* * *
7894163 AAAAAGTAATTACTAAAATAAAATAAAAACAAATTATTTCCAATAATGTATCGT
1 AAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCGT
* * *
7894217 AAAAATTAATTACGAAAATAAAATAAAAATAAATTGTTTACAAGAATGTAT
1 AAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTAT
7894268 TATTTAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (54 bp):
AAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCGT
Found at i:7894409 original size:8 final size:8
Alignment explanation
Indices: 7894394--7894468 Score: 53
Period size: 8 Copynumber: 10.4 Consensus size: 8
7894384 TTATTATTTA
7894394 TATA-TTT
1 TATAGTTT
7894401 TATAGTTT
1 TATAGTTT
7894409 TAT-GATTT
1 TATAG-TTT
7894417 TATA-TTT
1 TATAGTTT
7894424 TATTAG---
1 TA-TAGTTT
7894430 T-TAGTTT
1 TATAGTTT
7894437 TATA--TT
1 TATAGTTT
7894443 TATA-TTT
1 TATAGTTT
7894450 TATAGTTT
1 TATAGTTT
*
7894458 TATAATTT
1 TATAGTTT
7894466 TAT
1 TAT
7894469 TTTATTTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 21
0.72 0.01 0.27
Matches are distributed among these distances:
4 3 0.05
6 7 0.12
7 17 0.30
8 29 0.52
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (8 bp):
TATAGTTT
Found at i:7894455 original size:21 final size:22
Alignment explanation
Indices: 7894394--7894473 Score: 90
Period size: 26 Copynumber: 3.5 Consensus size: 22
7894384 TTATTATTTA
*
7894394 TATATTTTATAGTTTTATGATTT
1 TATATTTTATAGTTTTAT-AATT
*
7894417 TATATTTTATTAGTTAGTTTTATATT
1 TATATTTTA-TAGTT--TTATA-ATT
7894443 TATATTTTATAGTTTTATAATT
1 TATATTTTATAGTTTTATAATT
7894465 T-TATTTTAT
1 TATATTTTAT
7894474 TTAATAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 8 0.16
22 4 0.08
23 13 0.26
24 5 0.10
25 6 0.12
26 14 0.28
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
TATATTTTATAGTTTTATAATT
Found at i:7894880 original size:30 final size:31
Alignment explanation
Indices: 7894835--7894896 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
7894825 AAATATACAT
*
7894835 ATTATCAAAACATTAAAAAATTATAATTATA
1 ATTATCAAAAAATTAAAAAATTATAATTATA
*
7894866 ATTAT-AAAAAATTAAAAAATTGTAATTATA
1 ATTATCAAAAAATTAAAAAATTATAATTATA
7894896 A
1 A
7894897 AAATAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (31 bp):
ATTATCAAAAAATTAAAAAATTATAATTATA
Found at i:7894903 original size:30 final size:30
Alignment explanation
Indices: 7894841--7894904 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
7894831 ACATATTATC
* **
7894841 AAAACATTAAAAAATTATAATTATAATTAT
1 AAAAAATTAAAAAATTATAATTATAAAAAT
*
7894871 AAAAAATTAAAAAATTGTAATTATAAAAAT
1 AAAAAATTAAAAAATTATAATTATAAAAAT
7894901 AAAA
1 AAAA
7894905 CAACTCAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (30 bp):
AAAAAATTAAAAAATTATAATTATAAAAAT
Found at i:7894963 original size:6 final size:6
Alignment explanation
Indices: 7894952--7894978 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7894942 GAAAACTATA
7894952 AAATAT AAATAT AAATAT AAATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAA
7894979 ACTAACTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATAT
Found at i:7895019 original size:19 final size:18
Alignment explanation
Indices: 7894995--7895030 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7894985 TAATAAAGTA
*
7894995 TAAAAATATATTATAAAAC
1 TAAAAAAATA-TATAAAAC
7895014 TAAAAAAATATATAAAA
1 TAAAAAAATATATAAAA
7895031 AAAAGAAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAAAATATATAAAAC
Found at i:7895500 original size:21 final size:21
Alignment explanation
Indices: 7895474--7895528 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
7895464 AACAGCGGTG
*
7895474 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
7895495 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
7895516 GCGGTGAGATTAG
1 GCGGTGAGATTAG
7895529 AAACAATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:7895842 original size:22 final size:22
Alignment explanation
Indices: 7895791--7895848 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
7895781 TTTTATAGAT
*
7895791 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
7895814 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
7895836 ATAAT-AATATTAT
1 ATAATAAATATTAT
7895849 ACTTGGATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 11 0.37
22 16 0.53
23 3 0.10
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:7899172 original size:64 final size:64
Alignment explanation
Indices: 7899066--7899212 Score: 276
Period size: 64 Copynumber: 2.3 Consensus size: 64
7899056 ATGTTATATT
*
7899066 AGTTTGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
*
7899130 AGTTCGAATCCTTTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
7899194 AGTTCGAATCCTCTAATTT
1 AGTTCGAATCCTCTAATTT
7899213 AAATACTATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 80 1.00
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (64 bp):
AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
Found at i:7899863 original size:15 final size:15
Alignment explanation
Indices: 7899843--7899876 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7899833 TGTAAGTTTC
7899843 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
7899858 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
7899873 TTAG
1 TTAG
7899877 GGAAATTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:7900257 original size:15 final size:15
Alignment explanation
Indices: 7900237--7900270 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7900227 TGTAAGTTTC
7900237 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
7900252 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
7900267 TTAG
1 TTAG
7900271 GGAAATTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.18, T:0.29
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:7900549 original size:394 final size:394
Alignment explanation
Indices: 7899821--7900994 Score: 2193
Period size: 394 Copynumber: 3.0 Consensus size: 394
7899811 AGTTATAATT
7899821 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
7899886 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
66 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
7899951 GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
131 GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
7900016 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
196 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
7900081 CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
261 CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
7900146 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
326 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
7900211 TATA
391 TATA
7900215 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
7900280 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
66 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
7900345 GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
131 GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
7900410 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
196 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
7900475 CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
261 CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
7900540 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
326 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
7900605 TATA
391 TATA
7900609 ATTTATTGCATTTGTAAGTTTCTTAGAAAT--AA-GA-T-G--AT----TG----GGGAAATTTG
1 ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
7900659 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
66 GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
* *
7900724 GGTGTTGAATGCAACAGTTTTTTCTTTTGAAATGAACGACCGAAAGAGTGAGCTC-TTTTTTTCC
131 GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
7900788 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
196 TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
*
7900853 CTTTTCATTTGATTTAATTTGTGCTTTCTTCGC-TTTTTTCATTTGGTTTGATTTATCCTCTCCC
261 CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
*
7900917 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTCTCAT
326 TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
7900982 TATA
391 TATA
7900986 ATTTATTGC
1 ATTTATTGC
7900995 TATTGAATGC
Statistics
Matches: 776, Mismatches: 4, Indels: 17
0.97 0.01 0.02
Matches are distributed among these distances:
377 108 0.14
378 106 0.14
379 128 0.16
383 2 0.00
387 2 0.00
389 1 0.00
390 1 0.00
391 2 0.00
392 2 0.00
394 424 0.55
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (394 bp):
ATTTATTGCATTTGTAAGTTTCTTAGAAATAAAATGATTAGAAATAAGATGATTAGGGAAATTTG
GGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTGGGAAGTGAATGGGAAACTTCCCAATCCA
GGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAACGACCGAAAGAGTGAGCTCTTTTTTTTCC
TTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTCTTTTCATTTGGTTAACGAATCTCTGAAT
CTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTTTTTCATTTGGTTTGATTTATCCTCTCCC
TCTCTCTTTGTCTCACACATATGCACATCAACAGACGCAATTGTGTGTTCATCTCTTGTTTTCAT
TATA
Found at i:7903296 original size:21 final size:21
Alignment explanation
Indices: 7903270--7903313 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7903260 AAATAGAGCT
7903270 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
7903291 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
7903312 TC
1 TC
7903314 AATTGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.32, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:7903559 original size:24 final size:24
Alignment explanation
Indices: 7903531--7903578 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7903521 TGCACTGATC
7903531 GTCCAAACAAACAAAGCTGCAATA
1 GTCCAAACAAACAAAGCTGCAATA
7903555 GTCCAAACAAACAAAGCTGCAATA
1 GTCCAAACAAACAAAGCTGCAATA
7903579 AATTTAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (24 bp):
GTCCAAACAAACAAAGCTGCAATA
Found at i:7920682 original size:12 final size:12
Alignment explanation
Indices: 7920665--7920689 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7920655 GCAGTAGCCC
7920665 CAGTACCAGCAG
1 CAGTACCAGCAG
7920677 CAGTACCAGCAG
1 CAGTACCAGCAG
7920689 C
1 C
7920690 GATAGTGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CAGTACCAGCAG
Found at i:7935318 original size:25 final size:25
Alignment explanation
Indices: 7935284--7935335 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
7935274 AGAAAAAGCT
*
7935284 AAGAAGCATAGTAACATGCCCTTGA
1 AAGAAACATAGTAACATGCCCTTGA
*
7935309 AAGAAACATAGTTACATGCCCTTGA
1 AAGAAACATAGTAACATGCCCTTGA
7935334 AA
1 AA
7935336 TTGCAAGGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (25 bp):
AAGAAACATAGTAACATGCCCTTGA
Found at i:7943352 original size:25 final size:27
Alignment explanation
Indices: 7943301--7943365 Score: 64
Period size: 30 Copynumber: 2.4 Consensus size: 27
7943291 CACACTAAAC
7943301 TTTATTAAATTAAGATGTGAACTAATTTAA
1 TTTATTAAATTAAGA-GTGAAC-AA-TTAA
7943331 TTTATTAAATTAAGA-T-AA-AATTAA
1 TTTATTAAATTAAGAGTGAACAATTAA
* *
7943355 ATAATTAAATT
1 TTTATTAAATT
7943366 TATTATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 13 0.39
25 2 0.06
27 2 0.06
28 1 0.03
30 15 0.45
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (27 bp):
TTTATTAAATTAAGAGTGAACAATTAA
Found at i:7943598 original size:20 final size:20
Alignment explanation
Indices: 7943555--7943598 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7943545 AAATCCCTTC
* * * *
7943555 AAAGTAAATTCCTTGGATTG
1 AAAGGAAATTCCTTGAAATA
7943575 AAAGGAAATTCCTTGAAATA
1 AAAGGAAATTCCTTGAAATA
7943595 AAAG
1 AAAG
7943599 ATTAAGAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (20 bp):
AAAGGAAATTCCTTGAAATA
Found at i:7943647 original size:3 final size:3
Alignment explanation
Indices: 7943634--7943691 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
7943624 AGTTTAGTTT
*
7943634 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7943682 ATA ATA ATA A
1 ATA ATA ATA A
7943692 AAGACATCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7946665 original size:50 final size:50
Alignment explanation
Indices: 7946541--7946789 Score: 268
Period size: 50 Copynumber: 4.8 Consensus size: 50
7946531 GATAATAACA
* * ** * *
7946541 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7946592 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7946642 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7946692 TGCCCATGCCATGTCCCA-AGCATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGA-CATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7946747 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7946790 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
49 2 0.01
50 90 0.54
51 33 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 37 0.22
57 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7946721 original size:100 final size:104
Alignment explanation
Indices: 7946540--7946789 Score: 341
Period size: 100 Copynumber: 2.4 Consensus size: 104
7946530 TGATAATAAC
**
7946540 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7946605 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7946642 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7946705 TCCCA-AGCATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGA-CATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7946747 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7946790 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
99 2 0.02
100 48 0.36
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7946905 original size:13 final size:13
Alignment explanation
Indices: 7946884--7946915 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7946874 GCTTGGATCA
*
7946884 TCATCAAATAAAT
1 TCATAAAATAAAT
7946897 TCATAAAATAAAT
1 TCATAAAATAAAT
7946910 TCATAA
1 TCATAA
7946916 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7947162 original size:30 final size:30
Alignment explanation
Indices: 7947127--7947184 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7947117 CCTCGACTCT
*
7947127 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7947157 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7947185 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7954253 original size:50 final size:50
Alignment explanation
Indices: 7954129--7954377 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
7954119 GATAATAACA
* * ** * *
7954129 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7954180 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7954230 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7954280 TGCCCATGCCATGTCCCAGGCATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7954335 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7954378 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.54
51 33 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Done.