Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 192 of 208
Found at i:59895196 original size:21 final size:21
Alignment explanation
Indices: 59895148--59895196 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
59895138 CCTTGGCCTC
*
59895148 TTATTTTTCTATTCTTTTTCT
1 TTATTTTTCTATTCATTTTCT
* *
59895169 TTCTTTTTCTTTTTCATTTT-T
1 TTATTTTTC-TATTCATTTTCT
59895190 TTATTTT
1 TTATTTT
59895197 GATTTTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (21 bp):
TTATTTTTCTATTCATTTTCT
Found at i:59897936 original size:16 final size:16
Alignment explanation
Indices: 59897911--59897945 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
59897901 TTTTATGATG
*
59897911 AAATGCCATGCAGTCA
1 AAATGCCATGCAGCCA
*
59897927 AAATGTCATGCAGCCA
1 AAATGCCATGCAGCCA
59897943 AAA
1 AAA
59897946 CAAAACACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (16 bp):
AAATGCCATGCAGCCA
Found at i:59899382 original size:3 final size:3
Alignment explanation
Indices: 59899374--59899406 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
59899364 GATCAAGAAC
59899374 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
59899407 GAAAAGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:59905110 original size:13 final size:14
Alignment explanation
Indices: 59905092--59905121 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
59905082 AAATTTATTT
59905092 AAATTT-AATATAA
1 AAATTTAAATATAA
59905105 AAATTTAAATATAA
1 AAATTTAAATATAA
59905119 AAA
1 AAA
59905122 AATTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATTTAAATATAA
Found at i:59909805 original size:17 final size:16
Alignment explanation
Indices: 59909780--59909814 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
59909770 AATTTGAATA
*
59909780 TTTTTAATTTTTATAT
1 TTTTTAATTTTTAAAT
59909796 TTTTTAAATTTTTAAAT
1 TTTTT-AATTTTTAAAT
59909813 TT
1 TT
59909815 CAGTCATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTAATTTTTAAAT
Found at i:59909902 original size:21 final size:21
Alignment explanation
Indices: 59909878--59909917 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
59909868 ATATGATGTG
59909878 CCAACCACATTATTATATACA
1 CCAACCACATTATTATATACA
59909899 CCAACCACATTATTATATA
1 CCAACCACATTATTATATA
59909918 TGTATTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (21 bp):
CCAACCACATTATTATATACA
Found at i:59912709 original size:3 final size:3
Alignment explanation
Indices: 59912701--59912730 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
59912691 AGATATATAC
59912701 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
59912731 TTTTGGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:59914015 original size:9 final size:9
Alignment explanation
Indices: 59914001--59914168 Score: 77
Period size: 9 Copynumber: 18.7 Consensus size: 9
59913991 TATTTTTCAC
59914001 ATAAAAATT
1 ATAAAAATT
*
59914010 ATAAAAAATC
1 AT-AAAAATT
59914020 ATAAAAA-T
1 ATAAAAATT
59914028 ATTAAAAATTT
1 A-TAAAAA-TT
*
59914039 ATATAAACTT
1 ATA-AAAATT
59914049 ATAAAAATT
1 ATAAAAATT
59914058 AT---AA-T
1 ATAAAAATT
59914063 A-AAAAATT
1 ATAAAAATT
*
59914071 CATAAAACCTT
1 -ATAAAA-ATT
* *
59914082 ATGAATATT
1 ATAAAAATT
59914091 ATAAAAACTT
1 ATAAAAA-TT
*
59914101 ATAAATATT
1 ATAAAAATT
*
59914110 CTAAAAATT
1 ATAAAAATT
* **
59914119 A-CAATTTT
1 ATAAAAATT
*
59914127 AAATAAAATT
1 ATA-AAAATT
59914137 AT-AAAA-T
1 ATAAAAATT
59914144 ATTAAAAA-T
1 A-TAAAAATT
59914153 ATATAAAATT
1 ATA-AAAATT
59914163 ATAAAA
1 ATAAAA
59914169 TTTTATTTAT
Statistics
Matches: 119, Mismatches: 21, Indels: 38
0.67 0.12 0.21
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 4 0.03
8 14 0.12
9 50 0.42
10 40 0.34
11 7 0.06
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:59914018 original size:10 final size:10
Alignment explanation
Indices: 59914003--59914105 Score: 59
Period size: 10 Copynumber: 10.2 Consensus size: 10
59913993 TTTTTCACAT
59914003 AAAAATTATA
1 AAAAATTATA
*
59914013 AAAAATCAT-
1 AAAAATTATA
59914022 AAAAA-TATTA
1 AAAAATTA-TA
*
59914032 AAAATTTATA
1 AAAAATTATA
* *
59914042 TAAACTTATA
1 AAAAATTATA
*
59914052 AAAATTATAATA
1 AAAA--ATTATA
59914064 AAAAATTCATA
1 AAAAATT-ATA
**
59914075 AAACCTTAT-
1 AAAAATTATA
* *
59914084 GAATATTATA
1 AAAAATTATA
*
59914094 AAAACTTATA
1 AAAAATTATA
59914104 AA
1 AA
59914106 TATTCTAAAA
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
8 1 0.01
9 12 0.17
10 38 0.55
11 10 0.14
12 8 0.12
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:59914083 original size:33 final size:33
Alignment explanation
Indices: 59914031--59914094 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
59914021 TAAAAATATT
*
59914031 AAAAATTTATATAAACTTATAAAAATTATAATA
1 AAAAATTCATATAAACTTATAAAAATTATAATA
* *
59914064 AAAAATTCATA-AAACCTTATGAATATTATAA
1 AAAAATTCATATAAA-CTTATAAAAATTATAA
59914095 AAACTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 3 0.11
33 24 0.89
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (33 bp):
AAAAATTCATATAAACTTATAAAAATTATAATA
Found at i:59914096 original size:19 final size:19
Alignment explanation
Indices: 59914001--59914168 Score: 67
Period size: 19 Copynumber: 9.3 Consensus size: 19
59913991 TATTTTTCAC
* *
59914001 ATAAAAA-TTATAAAAAATC
1 ATAAAAACTTAT-AAATATT
* *
59914020 ATAAAAATATTAAAAAT-TT
1 ATAAAAA-CTTATAAATATT
* *
59914039 ATATAAACTTATAAAAATT
1 ATAAAAACTTATAAATATT
* *
59914058 ATAATAA---A-AAAT-TC
1 ATAAAAACTTATAAATATT
* *
59914072 ATAAAACCTTATGAATATT
1 ATAAAAACTTATAAATATT
59914091 ATAAAAACTTATAAATATT
1 ATAAAAACTTATAAATATT
* * *
59914110 CTAAAAA-TTA-CAATTTT
1 ATAAAAACTTATAAATATT
*
59914127 A-AATAAAATTATAAA-A-T
1 ATAA-AAACTTATAAATATT
59914144 ATTAAAAA-TATATAAA-ATT
1 A-TAAAAACT-TATAAATATT
59914163 ATAAAA
1 ATAAAA
59914169 TTTTATTTAT
Statistics
Matches: 111, Mismatches: 23, Indels: 31
0.67 0.14 0.19
Matches are distributed among these distances:
14 6 0.05
15 3 0.03
16 3 0.03
17 12 0.11
18 30 0.27
19 51 0.46
20 3 0.03
21 3 0.03
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.34
Consensus pattern (19 bp):
ATAAAAACTTATAAATATT
Found at i:59914142 original size:8 final size:8
Alignment explanation
Indices: 59914129--59914170 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
59914119 ACAATTTTAA
59914129 ATAAAATT
1 ATAAAATT
59914137 ATAAAA-T
1 ATAAAATT
59914144 ATTAAAAATAT
1 A-T-AAAAT-T
59914155 ATAAAATT
1 ATAAAATT
59914163 ATAAAATT
1 ATAAAATT
59914171 TTATTTATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
7 2 0.07
8 16 0.53
9 9 0.30
10 1 0.03
11 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATAAAATT
Found at i:59914936 original size:18 final size:18
Alignment explanation
Indices: 59914905--59914958 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
59914895 TTTAAATATG
*
59914905 TTTTTATTAATTTTATAA
1 TTTTTATAAATTTTATAA
* *
59914923 TTTATTAGAATTTTTATAA
1 TTT-TTATAAATTTTATAA
59914942 TTTTTATAAATTTTATA
1 TTTTTATAAATTTTATA
59914959 TCAATTTTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTTATAAATTTTATAA
Found at i:59914966 original size:11 final size:9
Alignment explanation
Indices: 59914809--59914983 Score: 69
Period size: 10 Copynumber: 18.7 Consensus size: 9
59914799 TATAATTTCT
59914809 ATTTTT-TA
1 ATTTTTATA
*
59914817 ATTTTAATA
1 ATTTTTATA
59914826 A-TTTTATA
1 ATTTTTATA
*
59914834 ATTTATTA-G
1 ATTT-TTATA
59914843 ATATTTTATA
1 AT-TTTTATA
*
59914853 TTTGTTTATA
1 ATT-TTTATA
*
59914863 ATCTTTTATG
1 AT-TTTTATA
*
59914873 GTTTTT-TA
1 ATTTTTATA
* *
59914881 ACTTTCCATAAA
1 A-TTT--TTATA
*
59914893 ATTTTAAATA
1 ATTTT-TATA
*
59914903 TGTTTTTATTA
1 -ATTTTTA-TA
59914914 A-TTTTATA
1 ATTTTTATA
*
59914922 ATTTATTAGA
1 ATTT-TTATA
59914932 ATTTTTATA
1 ATTTTTATA
59914941 ATTTTTATAA
1 ATTTTTAT-A
59914951 ATTTTATATCA
1 ATTTT-TAT-A
59914962 A--TTT-TA
1 ATTTTTATA
59914968 ATTTTTAATA
1 ATTTTT-ATA
59914978 ATTTTT
1 ATTTTT
59914984 GTAAAAAAAA
Statistics
Matches: 124, Mismatches: 21, Indels: 42
0.66 0.11 0.22
Matches are distributed among these distances:
6 2 0.02
7 1 0.01
8 20 0.16
9 39 0.31
10 44 0.35
11 16 0.13
12 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:59915190 original size:3 final size:3
Alignment explanation
Indices: 59915182--59915214 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
59915172 CAATGGCTTA
59915182 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
59915215 TTCTTAAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:59918881 original size:22 final size:22
Alignment explanation
Indices: 59918851--59918907 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
59918841 TACGAGGGCT
*
59918851 GTGGAGGTATGGGACTGCTGTA
1 GTGGAGGTATGGGACCGCTGTA
* *
59918873 GTGGGGGTATGGGGCCGCTGTA
1 GTGGAGGTATGGGACCGCTGTA
* *
59918895 GTAGACGTATGGG
1 GTGGAGGTATGGG
59918908 GCTGCTTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.16, C:0.11, G:0.49, T:0.25
Consensus pattern (22 bp):
GTGGAGGTATGGGACCGCTGTA
Found at i:59920084 original size:86 final size:86
Alignment explanation
Indices: 59919849--59920123 Score: 228
Period size: 86 Copynumber: 3.1 Consensus size: 86
59919839 GATTTTTTTT
* * * * * **
59919849 TTGAAAAGCAGAACTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATAT--
** * *
59919914 GTTAATTTTTTTTTGAGAAGCAGAAA
64 G--AATTGATTTTTGA-AAACATAAA
*** * * * * *
59919940 TTGGAAAAAACATCTATTGAAAATACCTCGGCGTATGACCTGAGGCTCCATTCACCTCTAGCAAT
1 TT-G-AAAAACAGAAATTGAAAATACCTCAGC--ATGTCCTGAGGCTCAACTCACCTCTCGCAAT
59920005 ATGAATTGATTTTTGAAAACATAAA
62 ATGAATTGATTTTTGAAAACATAAA
* *
59920030 TTGAAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
59920095 GTTGGTTTTTGCCAAACAGT-AA
66 ATTGATTTTTG-AAAACA-TAAA
59920117 TTGAAAA
1 TTGAAAA
59920124 TACCTCAGCG
Statistics
Matches: 146, Mismatches: 32, Indels: 16
0.75 0.16 0.08
Matches are distributed among these distances:
86 39 0.27
87 14 0.10
88 23 0.16
89 1 0.01
90 9 0.06
91 13 0.09
92 1 0.01
93 21 0.14
95 25 0.17
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (86 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
ATTGATTTTTGAAAACATAAA
Found at i:59920154 original size:73 final size:72
Alignment explanation
Indices: 59920034--59921395 Score: 1021
Period size: 72 Copynumber: 18.2 Consensus size: 72
59920024 CATAAATTGA
* * * *
59920034 AAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59920099 GTTTTTG
66 ATTTTTG
* * * * *
59920106 CCAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
59920171 GA-TTTAG
65 GATTTTTG
* ** * ** * *
59920178 AAAACAGACATAAAAACAGAAATTGAAAGTGACTCAACACGTGA-GC-CAAGGCTCAACTCACCT
1 AAAACAGAAATTGAAA-A-TACCTCAACGTG--T---C-C-TGAGGCTCAA----C---TCACCT
* *
59920241 TTTGCAATATGAGTTGATTTTTTG
50 CTCGCAATATGAGTTGA-TTTTTG
** * ** * *
59920265 AAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
59920330 ATTTTTG
66 ATTTTTG
* *
59920337 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
59920402 GATTTTTG
65 GATTTTTG
*
59920410 AAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
1 -AAAAC----A--G---A--AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
59920475 CAATATGAGTTGATTTTCTTG
54 CAATATGAGTTGA-TTT-TTG
* * *
59920496 AAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
59920561 GATTTTTTG
65 GA-TTTTTG
* * * **
59920570 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59920635 AATTTTG
66 ATTTTTG
* **
59920642 AAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
59920707 GAATTTTG
65 GATTTTTG
* * * **
59920715 AAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59920780 ATTCTTTCA
66 ATT-TTT-G
* * * ** * ** * * * * * *
59920789 AAAACATAATAATGAAAACAGAAATGGAAAAT-ACCTCGGTGTGACCTGAGGCTCAACTCAC-C-
1 AAAACAGAA-ATTG-AAA-ATACCT-CAACGTGTCCT--GAG-G--CTCA-ACTCACCTCTCGCA
* * * * *
59920851 -TCT-CG--CA-ATATG
56 ATATGAGTTGATTTTTG
*** * ** * *
59920863 --AGTTGAAATT-AAAATACCACAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
59920925 TGATTTTTTTTT
64 TGA---TTTTTG
* * *
59920937 AAAACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAACAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
59921001 TTGATTTTTTTTTTG
63 TTGA-----TTTTTG
* ** *
59921016 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59921081 AATTTTG
66 ATTTTTG
* ** ** *
59921088 AAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59921153 AATTTTG
66 ATTTTTG
* * ** *
59921160 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59921225 AATTTTG
66 ATTTTTG
* * * ** *
59921232 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCATTTCTCGCGATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
59921297 ATTTTTTTTT
66 A---TTTTTG
* * *
59921307 AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
59921372 GA-TTTTG
65 GATTTTTG
*
59921379 AAAAACAAAAATT-AAAA
1 -AAAACAGAAATTGAAAA
59921396 GGCTTAACTC
Statistics
Matches: 1059, Mismatches: 155, Indels: 152
0.78 0.11 0.11
Matches are distributed among these distances:
64 8 0.01
65 4 0.00
67 5 0.00
68 4 0.00
69 3 0.00
70 3 0.00
71 16 0.02
72 303 0.29
73 285 0.27
74 16 0.02
75 71 0.07
76 71 0.07
77 83 0.08
78 10 0.01
79 46 0.04
80 10 0.01
82 7 0.01
83 7 0.01
84 55 0.05
85 33 0.03
86 5 0.00
87 14 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (72 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTG
Found at i:59920256 original size:158 final size:157
Alignment explanation
Indices: 59919955--59920868 Score: 550
Period size: 158 Copynumber: 5.9 Consensus size: 157
59919945 AAAAACATCT
* * * * * * *
59919955 ATTGAAAATACCTCGGCGTATGACCTGAGGCTCCATTCACCTCTAGCAATATGAATTGATTTTTG
1 ATTGAAAATACCTCGGCG--TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTAG
* * * *
59920020 AAAACATAAATTGAAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCT
63 AAAACAGAAATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCTCT
*
59920085 CGCAGTATGAGTTG-GTTTTTGCCAAA-CAGTA
128 CGCAATATGAGTTGAGTTTTTG--AAAGCAG-A
*
59920116 ATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAA
1 ATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAA
* * * *
59920181 ACAGACA-T-AAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAACTCACCTT
66 ACAGAAATTGAAAAACAGAAATGGAAAAT-ACCTCAACA--TG-GCCTAAGGCTCAACTCACCTC
* * *
59920242 TTGCAATATGAGTTGATTTTTTGAAAGTAGA
127 TCGCAATATGAGTTGAGTTTTTGAAAGCAGA
59920273 ATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT----
1 A-TTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAA
* * * * * *
59920334 --------TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
65 AACAGAAATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCTCTCG
59920391 CAATATGAGTTGA-TTTTTGAAAAACATAAATTGAACAGGA
130 CAATATGAGTTGAGTTTTTG--------AAA--G--CA-GA
** * **
59920431 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-----
1 ATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAA
* * * ** * * * *
59920491 TC-----TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGT
66 ACAGAAATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCTCTCGC
*
59920551 AATATGAGTTGATTTTTTGACAA-CAGAA
131 AATATGAGTTGAGTTTTTGA-AAGCAG-A
* * * * ** *
59920579 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT-----
1 ATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAA
* * * * * * **
59920639 -------TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66 ACAGAAATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCTCTCGC
* *
59920697 AATATGAGTTGA-ATTTTGAAAACAGAA
131 AATATGAGTTGAGTTTTTGAAAGCAG-A
* *** * ** **
59920724 ATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCA
1 ATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT-A
* * **** * *
59920789 -AAAACATAATAATG-AAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCT
62 GAAAACAGAA-ATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCT
59920852 CTCGCAATATGAGTTGA
126 CTCGCAATATGAGTTGA
59920869 AATTAAAATA
Statistics
Matches: 642, Mismatches: 65, Indels: 93
0.80 0.08 0.12
Matches are distributed among these distances:
144 2 0.00
145 73 0.11
146 98 0.15
147 3 0.00
148 82 0.13
152 1 0.00
153 5 0.01
155 1 0.00
156 23 0.04
157 62 0.10
158 105 0.16
159 105 0.16
160 63 0.10
161 19 0.03
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (157 bp):
ATTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAA
ACAGAAATTGAAAAACAGAAATGGAAAATACCTCAACATGGCCTAAGGCTCAACTCACCTCTCGC
AATATGAGTTGAGTTTTTGAAAGCAGA
Found at i:59920565 original size:232 final size:228
Alignment explanation
Indices: 59920030--59921377 Score: 1050
Period size: 232 Copynumber: 6.0 Consensus size: 228
59920020 AAAACATAAA
* * * * *
59920030 TTGAAAAACAGAAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * *
59920095 GTTGGTTTTTGCCAAACAGTAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * *
59920160 CAATATGAGTTGATTTAGAAAACAGACATAAA-AACAGAAATTGAAAGTGA-CTCAACACGTGAG
131 CAATATGAGTTGATTTTG-AAA-A-ACATAAAGAACAGAAATTGAAAAT-ACCTC-A-ACGTG-T
** * *
59920223 C-CAAGGCTCAACTCACCTTTTGCAATATGAGTTGATTTT
189 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** * *
59920262 TTG-AAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
59920326 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
*
59920391 CAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGTGTCTTG
131 CAATATGAGTTGA-TTTTGAAAAACATAAA--GAACAGAAATTGAAAATACCTCAACGTGTCTTG
59920456 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
193 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
59920492 CTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGTAATATG
1 -TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* **
59920557 AGTTGATTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCT
65 AGTTGA-TTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
59920621 CGCAATATGAGTTGAATTTTG------A-AAAG--CAGAAATTGAAAATACCTCAACGTGTCTTG
129 CGCAATATGAGTTG-ATTTTGAAAAACATAAAGAACAGAAATTGAAAATACCTCAACGTGTCTTG
** *
59920677 AGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATT
193 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * * **
59920712 TTGAAAA-CAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
59920776 GTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGC
66 GTTGA---TTT--------T--TGA--AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
** * * *** * *
59920841 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAATAC-CACAG-TGTGTAATCTG---A-AG
116 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-ACATAAAGAACAGAAAT-TGAAAATAC
* * * * * *
59920899 CTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGT-TGA-TT--TTTT
179 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
59920934 TTTAAAA-CAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAGCAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* * * *
59920997 TAAGTTGATTTTTTTTTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
63 TGAGTTGA-----TTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
** * * **
59921061 ATTTCTCGCAATATAAGTTGAATTTTG---------AA-AACAGAAATTGAAATTACCTCAGTGT
123 ACCTCTCGCAATATGAGTTG-ATTTTGAAAAACATAAAGAACAGAAATTGAAAATACCTCAACGT
* ** * *
59921116 GTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATT
187 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** *
59921157 TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAA
1 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * **
59921221 GTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCAACTCATTTCTCG
66 GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* *** * * * * *
59921285 CGATATGAGTTGATTTT-----TTTTTAACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
131 CAATATGAGTTGATTTTGAAAAACATAAAGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
*
59921345 CTCAACTCACCTCTAGCAATATGAGTTGATTTT
196 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
59921378 GAAAAACAAA
Statistics
Matches: 920, Mismatches: 125, Indels: 153
0.77 0.10 0.13
Matches are distributed among these distances:
205 2 0.00
206 5 0.01
209 5 0.01
212 2 0.00
213 56 0.06
214 3 0.00
215 6 0.01
216 68 0.07
217 3 0.00
218 61 0.07
219 10 0.01
220 68 0.07
221 97 0.11
222 29 0.03
223 30 0.03
224 38 0.04
225 6 0.01
226 7 0.01
227 2 0.00
228 4 0.00
229 11 0.01
230 42 0.05
231 131 0.14
232 151 0.16
233 66 0.07
236 7 0.01
237 1 0.00
238 3 0.00
239 4 0.00
240 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (228 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTGAAAAACATAAAGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:59920764 original size:72 final size:73
Alignment explanation
Indices: 59920424--59920781 Score: 540
Period size: 73 Copynumber: 4.9 Consensus size: 73
59920414 ACATAAATTG
* **
59920424 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
*
59920489 TTTCTTGAA
66 ATT-TTGAA
* ** *
59920498 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
* *
59920563 TTTTTTGAC
65 TATTTTGAA
* * *
59920572 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
59920636 ATTTTGAA
66 ATTTTGAA
59920644 AAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
59920709 -ATTTTGAA
65 TATTTTGAA
* *
59920717 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
59920782 TCTTTCAAAA
Statistics
Matches: 263, Mismatches: 18, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
72 68 0.26
73 124 0.47
74 8 0.03
75 63 0.24
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
ATTTTGAA
Found at i:59921205 original size:517 final size:489
Alignment explanation
Indices: 59920435--59921569 Score: 1462
Period size: 517 Copynumber: 2.3 Consensus size: 489
59920425 ACAGGAATTG
* * * * *
59920435 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAA
1 AAAACACCTCAGCGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
* * * *
59920500 GCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATT
66 -CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-A
* *
59920565 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATG
129 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATA
*
59920630 AGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
194 AGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATTTCTC
* * * *
59920695 GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTC
259 GCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTAAGGCTCAACTC
59920760 ATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGAA-AACAGAAATGGAAAATACC
324 ATTTCTCGCAATATGAGTTGATT-TTT--------T--T--TGAACAACAGAAATGGAAAATACC
* * * ***
59920824 TCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAATACCACAGTGT
376 TCAGCGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAAAA-A-CA-AAAAT
* * * *
59920888 GTAATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAACAGAAATTG
438 -TAA----AAGGCTCAACTCACCTCTCGCAATATGAG-TCA-----ATTTAAAACAGAAACTA
* *
59920950 AAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTT
1 AAAACACCTCAGC--GTG-ACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTT
* *
59921014 TGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGT
60 TGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGT
*
59921079 TGAATTTTGAAAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCATTTCTCGCAA
125 TGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
* *
59921144 TATAAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
190 TATAAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATT
*
59921208 TCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTAAGGCTCA
255 TCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTAAGGCTCA
* * * * *
59921273 ACTCATTTCTCGCGATATGAGTTGATTTTTTTTTAACAACAGAAATTGAAATTACCTCAGCGTGT
320 ACTCATTTCTCGCAATATGAGTTGATTTTTTTTGAACAACAGAAATGGAAAATACCTCAGCGTGA
** *
59921338 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAA
385 CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAAAAACAAAAATTAAAAGGCTCAA
*
59921403 CTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTA
450 CTCACCTCTCGCAATATGAGTCAATTTAAAACAGAAACTA
* * *
59921443 AAAACACCTCGGCGTGCCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTT-AAAA
1 AAAACACCTCAGCGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
*
59921506 -A-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG-ATT
66 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATT
59921568 TT
131 TT
59921570 CCTTGGAAAG
Statistics
Matches: 561, Mismatches: 49, Indels: 52
0.85 0.07 0.08
Matches are distributed among these distances:
483 5 0.01
484 55 0.10
485 1 0.00
486 4 0.01
487 6 0.01
490 1 0.00
491 35 0.06
493 24 0.04
498 4 0.01
499 25 0.04
502 3 0.01
503 2 0.00
504 5 0.01
505 61 0.11
506 5 0.01
508 1 0.00
515 12 0.02
516 3 0.01
517 162 0.29
518 79 0.14
519 57 0.10
520 11 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (489 bp):
AAAACACCTCAGCGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATT
TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAG
TTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCATTTCTCGC
AATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTAAGGCTCAACTCAT
TTCTCGCAATATGAGTTGATTTTTTTTGAACAACAGAAATGGAAAATACCTCAGCGTGACCTGAG
GCTCAACTCACCTCTAGCAATATGAGTTGAAATTGAAAAACAAAAATTAAAAGGCTCAACTCACC
TCTCGCAATATGAGTCAATTTAAAACAGAAACTA
Found at i:59921543 original size:70 final size:72
Alignment explanation
Indices: 59921395--59921569 Score: 209
Period size: 70 Copynumber: 2.5 Consensus size: 72
59921385 AAAAATTAAA
* * * * **
59921395 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTTAAAACATAAACTAAAAACACCTCGGCG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAACACCTCAACG
59921457 TGCCTCG
66 TGCCTCG
* *
59921464 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAA-A-AAATTAAAAATACCTCAACG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAACACCTCAACG
* *
59921527 TGTCTTG
66 TGCCTCG
59921534 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
59921570 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
69 27 0.29
70 57 0.62
71 1 0.01
72 7 0.08
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACATAAACTAAAAACACCTCAACG
TGCCTCG
Found at i:59934057 original size:20 final size:20
Alignment explanation
Indices: 59934029--59934079 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
59934019 AAAAATATAC
59934029 TATACATAATAAAA-TAATAA
1 TATA-ATAATAAAACTAATAA
59934049 TAGTAATAA-AAAACTAATAA
1 TA-TAATAATAAAACTAATAA
*
59934069 TATAAAAATAA
1 TATAATAATAA
59934080 CAAGGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 9 0.33
20 16 0.59
21 2 0.07
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
TATAATAATAAAACTAATAA
Found at i:59934066 original size:17 final size:16
Alignment explanation
Indices: 59934034--59934076 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
59934024 TATACTATAC
59934034 ATAATAAAATAATAATA
1 ATAATAAAA-AATAATA
*
59934051 GTAATAAAAAACTAATA
1 ATAATAAAAAA-TAATA
59934068 AT-ATAAAAA
1 ATAATAAAAA
59934077 TAACAAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (16 bp):
ATAATAAAAAATAATA
Found at i:59958879 original size:30 final size:30
Alignment explanation
Indices: 59958815--59958881 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
59958805 TATTGAGCGG
*
59958815 TAAAATTTAATTAAAAATTAAAGTTAATGG
1 TAAAATTTAATTAAAAATTAAAGTTAATGA
*
59958845 TAAAATTTAA-T-AAAATTCAAAGTTTAGTGA
1 TAAAATTTAATTAAAAATT-AAAG-TTAATGA
59958875 TAAAATT
1 TAAAATT
59958882 CAATCATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 6 0.18
29 5 0.15
30 22 0.67
ACGTcount: A:0.52, C:0.01, G:0.09, T:0.37
Consensus pattern (30 bp):
TAAAATTTAATTAAAAATTAAAGTTAATGA
Found at i:59959429 original size:2 final size:2
Alignment explanation
Indices: 59959422--59959462 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
59959412 ATCAATTTTA
*
59959422 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59959463 CAAACCAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:59964744 original size:22 final size:22
Alignment explanation
Indices: 59964719--59964764 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
59964709 TTTTGCTATG
*
59964719 ATTTCATTTCCTTTTTTATTTT
1 ATTTCAATTCCTTTTTTATTTT
* *
59964741 ATTTTAATTCCTTTTTTCTTTT
1 ATTTCAATTCCTTTTTTATTTT
59964763 AT
1 AT
59964765 GTTTTTCTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.13, G:0.00, T:0.72
Consensus pattern (22 bp):
ATTTCAATTCCTTTTTTATTTT
Found at i:59970644 original size:14 final size:14
Alignment explanation
Indices: 59970627--59970689 Score: 56
Period size: 14 Copynumber: 4.3 Consensus size: 14
59970617 TATATATATT
59970627 ATTTTATTTATAAA
1 ATTTTATTTATAAA
*
59970641 ATTTTAATTTTTATAGA
1 ATTTT-A--TTTATAAA
*
59970658 ATTTTATTCATAAA
1 ATTTTATTTATAAA
*
59970672 ATTATATTT-TAACA
1 ATTTTATTTATAA-A
59970686 ATTT
1 ATTT
59970690 AAAAAAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
13 3 0.08
14 22 0.56
15 1 0.03
16 1 0.03
17 12 0.31
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.56
Consensus pattern (14 bp):
ATTTTATTTATAAA
Found at i:59971172 original size:38 final size:38
Alignment explanation
Indices: 59971121--59971197 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
59971111 TAATTTAACC
59971121 TAAATTTTTTGTTTGAAATGATGATTTAGCGTGCCGTG
1 TAAATTTTTTGTTTGAAATGATGATTTAGCGTGCCGTG
59971159 TAAATTTTTTGTTTGAAATGATGATTTAGCGTGCCGTG
1 TAAATTTTTTGTTTGAAATGATGATTTAGCGTGCCGTG
59971197 T
1 T
59971198 TTGCTTACCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.45
Consensus pattern (38 bp):
TAAATTTTTTGTTTGAAATGATGATTTAGCGTGCCGTG
Found at i:59971817 original size:20 final size:19
Alignment explanation
Indices: 59971781--59971819 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
59971771 CATGTGGCAC
*
59971781 TTTTATTTTATTTTTATTT
1 TTTTATTTTATTCTTATTT
*
59971800 TTTTCATTTTGTTCTTATTT
1 TTTT-ATTTTATTCTTATTT
59971820 ATTTGTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (19 bp):
TTTTATTTTATTCTTATTT
Found at i:59977164 original size:26 final size:25
Alignment explanation
Indices: 59977121--59977174 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 25
59977111 TATTAAAAAG
59977121 TAAAAATATTCTTAAAATAATATTTA
1 TAAAAATATTCTTAAAATAATA-TTA
* *
59977147 TAAAAATATTTTTTAAATAATATTA
1 TAAAAATATTCTTAAAATAATATTA
59977172 TAA
1 TAA
59977175 TTAAATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAAAATATTCTTAAAATAATATTA
Found at i:59978110 original size:21 final size:21
Alignment explanation
Indices: 59978086--59978131 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
59978076 TTTTAAATGA
59978086 ATTTTAAATAAAAATAATTTT
1 ATTTTAAATAAAAATAATTTT
** *
59978107 ATTTTAAATAATTATTATTTT
1 ATTTTAAATAAAAATAATTTT
59978128 ATTT
1 ATTT
59978132 ATTTTTGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTAAATAAAAATAATTTT
Found at i:59978115 original size:15 final size:16
Alignment explanation
Indices: 59978097--59978128 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
59978087 TTTTAAATAA
59978097 AAATAATT-TTATTTT
1 AAATAATTATTATTTT
59978112 AAATAATTATTATTTT
1 AAATAATTATTATTTT
59978128 A
1 A
59978129 TTTATTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
AAATAATTATTATTTT
Found at i:59978807 original size:24 final size:24
Alignment explanation
Indices: 59978758--59978809 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
59978748 ATATGTATTA
*
59978758 AAATTAAAAAAATAAATTTACATTT
1 AAATGAAAAAAATAAA-TTACATTT
*
59978783 AAATGAAAAAAATTAAA-TACTTTT
1 AAATGAAAAAAA-TAAATTACATTT
59978807 AAA
1 AAA
59978810 AATACCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.38
25 11 0.46
26 4 0.17
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATGAAAAAAATAAATTACATTT
Found at i:59987235 original size:41 final size:40
Alignment explanation
Indices: 59987175--59987379 Score: 202
Period size: 41 Copynumber: 5.0 Consensus size: 40
59987165 TGATTGAATG
* * *
59987175 TAATACAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAA
1 TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
59987215 GTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A
1 -TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
* *
59987255 TACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTG-A
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
* * *
59987296 TACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTGTAC
1 TA-A-TTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG-AA
* * **
59987339 TGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGAA
1 T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
59987379 T
1 T
59987380 CTGTTTAAAT
Statistics
Matches: 145, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.01
40 7 0.05
41 131 0.90
42 2 0.01
43 2 0.01
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (40 bp):
TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
Found at i:59994826 original size:41 final size:40
Alignment explanation
Indices: 59994769--59994967 Score: 204
Period size: 41 Copynumber: 4.9 Consensus size: 40
59994759 GAATGTAATA
* * *
59994769 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA-CATTT
59994810 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA-ACATTT
* * *
59994851 CAGACTATATGTCTAGCAGGCTTAATGCTGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA-ACATTT
* * * *
59994892 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTGTAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGAACAT--TT
* * **
59994933 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGAA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAA
59994968 TCTGTTTAAA
Statistics
Matches: 138, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 5 0.04
41 129 0.93
42 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (40 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAACATTT
Found at i:59997567 original size:22 final size:20
Alignment explanation
Indices: 59997529--59997570 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
59997519 GGATGTGATT
59997529 TTTTAAATAATCATTAAAAA
1 TTTTAAATAATCATTAAAAA
* *
59997549 TTTTATAATAATTATTTAAAA
1 TTTTA-AATAATCATTAAAAA
59997570 T
1 T
59997571 AAATTATGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTAAATAATCATTAAAAA
Found at i:60001959 original size:31 final size:30
Alignment explanation
Indices: 60001887--60001959 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
60001877 CTTTGATCTC
*
60001887 AATGACAAAACAATCACTCAACTTTCAAAA
1 AATGACAAATCAATCACTCAACTTTCAAAA
* *
60001917 AATAACAAATCAATCACT-AACATTATCGAAA
1 AATGACAAATCAATCACTCAAC-TT-TCAAAA
*
60001948 AGTGACAAATCA
1 AATGACAAATCA
60001960 GTCATCCATT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 3 0.08
30 18 0.50
31 15 0.42
ACGTcount: A:0.53, C:0.21, G:0.05, T:0.21
Consensus pattern (30 bp):
AATGACAAATCAATCACTCAACTTTCAAAA
Found at i:60002702 original size:19 final size:20
Alignment explanation
Indices: 60002671--60002709 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
60002661 AATGATGATC
60002671 GATCATATTTCTCTTCAATT
1 GATCATATTTCTCTTCAATT
60002691 GATCAT-TTTCTCTTCAATT
1 GATCATATTTCTCTTCAATT
60002710 ATTTTGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (20 bp):
GATCATATTTCTCTTCAATT
Found at i:60006582 original size:21 final size:21
Alignment explanation
Indices: 60006549--60006589 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
60006539 TGATATATTC
60006549 ATTTTTATGTTATTTTATAAAA
1 ATTTTTATGTTATTTT-TAAAA
*
60006571 ATTTTTGT-TTATTTTTAAA
1 ATTTTTATGTTATTTTTAAA
60006590 TTATGTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTTTTATGTTATTTTTAAAA
Found at i:60009187 original size:29 final size:28
Alignment explanation
Indices: 60009111--60009187 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 28
60009101 AGTGGACTTG
*
60009111 AAATTTTAAATCCTAAAAGTAAAGGGACT
1 AAATTTTAAAT-GTAAAAGTAAAGGGACT
* *
60009140 AAATTTCTGGAA-GTAAAAGTAAATGGACT
1 AAATTT-T-AAATGTAAAAGTAAAGGGACT
60009169 AAATTTTAAATGTAGAAAG
1 AAATTTTAAATGTA-AAAG
60009188 AGTACAAGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.05
28 4 0.10
29 31 0.77
30 1 0.03
31 2 0.05
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (28 bp):
AAATTTTAAATGTAAAAGTAAAGGGACT
Found at i:60009967 original size:92 final size:92
Alignment explanation
Indices: 60009810--60009996 Score: 295
Period size: 92 Copynumber: 2.0 Consensus size: 92
60009800 TGTACCGACC
* * * *
60009810 TATACAGGTTTGTAACACCCTCGACTCGACTTAGGAGTTTCAGCTAAGTCGAAGGCGTTACATTG
1 TATACAAGTTTGTAACACCCCCGACCCGACTTAGGAGTTTCAGCTAAGTCGAAGGCATTACATTG
60009875 ATCACCGAAATGATCCTGTAAAGCCAT
66 ATCACCGAAATGATCCTGTAAAGCCAT
* *
60009902 TATACAAGTTTGTAACACCCCCGACCC-AGCTTAGGAGTTTCGGCTAGGTCGAAGGCATTACATT
1 TATACAAGTTTGTAACACCCCCGACCCGA-CTTAGGAGTTTCAGCTAAGTCGAAGGCATTACATT
*
60009966 GATCACCGAAGTGATCCTGTAAAGCCAT
65 GATCACCGAAATGATCCTGTAAAGCCAT
60009994 TAT
1 TAT
60009997 TTTGCTTTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 86 0.99
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (92 bp):
TATACAAGTTTGTAACACCCCCGACCCGACTTAGGAGTTTCAGCTAAGTCGAAGGCATTACATTG
ATCACCGAAATGATCCTGTAAAGCCAT
Found at i:60012181 original size:19 final size:19
Alignment explanation
Indices: 60012137--60012183 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
60012127 GGGCCACACA
*
60012137 ACCGTGTGGAAATTCCTAG
1 ACCGTGTGGAAATGCCTAG
*
60012156 ACTGTGTGGAAATGCCTAG
1 ACCGTGTGGAAATGCCTAG
*
60012175 GCCGTGTGG
1 ACCGTGTGG
60012184 GGGGTCAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (19 bp):
ACCGTGTGGAAATGCCTAG
Found at i:60012938 original size:8 final size:8
Alignment explanation
Indices: 60012925--60012965 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
60012915 ATTATTTTTT
60012925 AAAAGAAG
1 AAAAGAAG
60012933 AAAAGAAG
1 AAAAGAAG
*
60012941 AAAAGCA-
1 AAAAGAAG
60012948 AAAAGAA-
1 AAAAGAAG
*
60012955 AAAAAAAG
1 AAAAGAAG
60012963 AAA
1 AAA
60012966 GGGGAACCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
7 12 0.41
8 17 0.59
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAGAAG
Found at i:60020256 original size:23 final size:24
Alignment explanation
Indices: 60020230--60020275 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
60020220 ATAGTTTTCG
60020230 AAAAT-ATTTTCTATTTT-TATTTA
1 AAAATAATTTT-TATTTTCTATTTA
60020253 AAAATAATTTTTATTTTCTATTT
1 AAAATAATTTTTATTTTCTATTT
60020276 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (24 bp):
AAAATAATTTTTATTTTCTATTTA
Found at i:60023578 original size:20 final size:20
Alignment explanation
Indices: 60023566--60023605 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60023556 CTGACTGCAC
60023566 TTACTGCTAACTGCTAAACT
1 TTACTGCTAACTGCTAAACT
60023586 TTACTGCTAACTGCTAAACT
1 TTACTGCTAACTGCTAAACT
60023606 AACGATACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
TTACTGCTAACTGCTAAACT
Found at i:60028073 original size:20 final size:20
Alignment explanation
Indices: 60028061--60028100 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60028051 CTGACTGCAC
60028061 TTACTGCTAACTGCTAAACT
1 TTACTGCTAACTGCTAAACT
60028081 TTACTGCTAACTGCTAAACT
1 TTACTGCTAACTGCTAAACT
60028101 AACCATACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
TTACTGCTAACTGCTAAACT
Found at i:60028843 original size:27 final size:28
Alignment explanation
Indices: 60028805--60028857 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
60028795 TGTTTTCCTT
*
60028805 TTTAATAATATATTATAAAA-ATTAATA
1 TTTAATAATATAATATAAAAGATTAATA
* *
60028832 TTTAATATTATAATGTAAAAGATTAA
1 TTTAATAATATAATATAAAAGATTAA
60028858 AAAAATTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (28 bp):
TTTAATAATATAATATAAAAGATTAATA
Found at i:60032088 original size:11 final size:11
Alignment explanation
Indices: 60032072--60032096 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60032062 CACACCCGTG
60032072 TGAGGATTAAT
1 TGAGGATTAAT
60032083 TGAGGATTAAT
1 TGAGGATTAAT
60032094 TGA
1 TGA
60032097 TTTGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (11 bp):
TGAGGATTAAT
Found at i:60035654 original size:132 final size:131
Alignment explanation
Indices: 60035481--60035926 Score: 723
Period size: 132 Copynumber: 3.4 Consensus size: 131
60035471 GCAACGCTAG
* * *
60035481 GGAA-ATAAGATTCGCTGTCTTTGATATGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCT
1 GGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCT
* *
60035545 TTAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTAGCTTAAATCTGCTTCCCTACTACCT
66 TCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCT
60035610 T
131 T
* * *
60035611 CGGAAGATAAAATTCACCGTCTTTAATCTGCTCTACTACTGCTTAGGGAGACAGGATCTACAATC
1 -GGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATC
* *
60035676 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGACTGGTGGCTCAAATCTGCTTCCCTACTACC
65 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
60035741 TT
130 TT
*
60035743 GGAAAGATAAGATTCACCGTCATTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATC
1 GG-AAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATC
*
60035808 TTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
65 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACC
60035873 TT
130 TT
* * *
60035875 AGGAAGATAAGATTCACCGTTTTTTATCTACTCCACTACTGCTTAGGGAGAC
1 -GGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGAC
60035927 TTAAATCCGC
Statistics
Matches: 291, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
131 6 0.02
132 283 0.97
133 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (131 bp):
GGAAGATAAGATTCACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCT
TCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCT
T
Found at i:60037207 original size:14 final size:14
Alignment explanation
Indices: 60037167--60037216 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
60037157 TTGGCCTCTC
60037167 CTTTTTCTTTTTCTT
1 CTTTTTCTTTTT-TT
*
60037182 TTCTTTTCTTTTTTT
1 CT-TTTTCTTTTTTT
* *
60037197 GTTTTTGTTTTTTT
1 CTTTTTCTTTTTTT
60037211 CTTTTT
1 CTTTTT
60037217 TTAAAAAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 16 0.53
15 4 0.13
16 10 0.33
ACGTcount: A:0.00, C:0.12, G:0.04, T:0.84
Consensus pattern (14 bp):
CTTTTTCTTTTTTT
Found at i:60043515 original size:19 final size:20
Alignment explanation
Indices: 60043487--60043524 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
60043477 ATTACCCACG
60043487 TCAAACAAAAATA-AAAATT
1 TCAAACAAAAATATAAAATT
*
60043506 TCAAAGAAAAATATAAAAT
1 TCAAACAAAAATATAAAAT
60043525 ATCTCCCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.21
Consensus pattern (20 bp):
TCAAACAAAAATATAAAATT
Found at i:60048023 original size:16 final size:17
Alignment explanation
Indices: 60047987--60048023 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
60047977 AGATTTATTC
60047987 AATTTAAACTCGAAAAT
1 AATTTAAACTCGAAAAT
*
60048004 -ATTTAAATTC-AAAAT
1 AATTTAAACTCGAAAAT
60048019 AATTT
1 AATTT
60048024 GAATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (17 bp):
AATTTAAACTCGAAAAT
Found at i:60050752 original size:22 final size:22
Alignment explanation
Indices: 60050727--60050774 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
60050717 AAGTCACGTA
*
60050727 CAGAAATAGAAACAGG-ATATAT
1 CAGAAAGAGAAACAGGTA-ATAT
* *
60050749 CAGATAGAGATACAGGTAATAT
1 CAGAAAGAGAAACAGGTAATAT
60050771 CAGA
1 CAGA
60050775 TACATATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.19
Consensus pattern (22 bp):
CAGAAAGAGAAACAGGTAATAT
Found at i:60055043 original size:659 final size:664
Alignment explanation
Indices: 60053788--60055128 Score: 2287
Period size: 659 Copynumber: 2.0 Consensus size: 664
60053778 ACAGATTGAT
*
60053788 CAAATCTTAATTATCAAACTAAAAAATAATCAAAATTTGAACACTCTTTTTTCATAAATCCGAAT
1 CAAATCTTAATTATCAAACTAAAAAATAATCAAAATTTGAACACTCTTTTTTCATAAATCCCAAT
* *
60053853 TATCAAAGTTAACAAGAAATTCAATTTACTTAAAACATTTTTCAGAGAGATTTTTGAACCCAAAA
66 TATCAAAGTTAACAAGAAATTCAATTCACTTAAAACATTTTTCAAAGAGATTTTTGAACCCAAAA
*
60053918 ATCATAGTCCAAATTTTGTAACTTGGTTTTGATACCACTAAATGTAACACCCCAAACCTGGCCTA
131 ATCACAGTCCAAATTTTGTAACTTGGTTTTGATACCACTAAATGTAACACCCCAAACCTGGCCTA
60053983 AAAGTTATAACCGAATCTGGAGAAATTGCATCGACTCACTTGGAAAATTGATTTCAGTAAGTGTT
196 AAAGTTATAACCGAATCTGGAGAAATTGCATCGACTCACTTGGAAAATTGATTTCAGTAAGTGTT
60054048 AAGCAAATAAGACTTTCACAAATAATCATTAGAAACCTATTTTTTCGCTTTCAGAAACCACTTAA
261 AAGC-----AG-------CAAATAA-CATTAGAAACCTATTTTTTCGCTTTCAGAAACCACTTAA
* *
60054113 GAAATTACTTAATTTACAGCAAAAACCTTTTTAGGAGTTTTAGTTTAAAAAACTAAAATCTATTT
313 GAAATTACTTAATTTACAACAAAAACCTTTTTAGGAGTTTTAGTTTAAAAAACCAAAATCTATTT
* *
60054178 TATCGACTTAAGTGATTTTGCAATCTCACGCTAGAAAATATCAATTACCGATGAATTAAGCAAAA
378 TATCAACTTAAGTGATTTTGCAATCTCACGCTAGAAAATATCAATTACCGACGAATTAAGCAAAA
* * * *
60054243 CCCAAAATGAGTTTAGAAATAGATTACAAACCCGAAAGATCAAAACATATAATTATGGGATTCAT
443 CCCAAAACGAGTTTAGAAACAGATTACAAACCCAAAAGATCAAAACATATAATTATGGAATTCAT
60054308 TGTATTTACATTAAGTGCAAAAATAATCTAAGCTCCCACACGCTGTCCAATCCTAAGTCTGAGGT
508 TGTATTTACATTAAGTGCAAAAATAATCTAAGCTCCCACACGCTGTCCAATCCTAAGTCTGAGGT
*
60054373 TTACCTGAACAGACAAAGATAAAACAAAGGGGTGAGCTATGAAGCTAATTGTATAACTAAACTCA
573 TTACCTGAACAGACAAAGATAAAACAAAAGGGTGAGCTATGAAGCTAATTGTATAACTAAACTCA
60054438 AACAAAGATCAAACAAAACACCATATA
638 AACAAAGATCAAACAAAACACCATATA
* *
60054465 CAAATCTTAATTATCAAACTCAAAAATAATCAAAATTTGAACGCTCTTTTTTCATAAATCCCAAT
1 CAAATCTTAATTATCAAACTAAAAAATAATCAAAATTTGAACACTCTTTTTTCATAAATCCCAAT
60054530 TATCAAAGTTAACAAGAAATTCAATTCACTTAAAACATTTTTCAAAGAGATTTTTGAACCCAAAA
66 TATCAAAGTTAACAAGAAATTCAATTCACTTAAAACATTTTTCAAAGAGATTTTTGAACCCAAAA
* *
60054595 ATCACAGTCCAAGTTTTGTAACTTGGTTTTGATACCACTAAATGTAACATCCCAAACCTGGCCTA
131 ATCACAGTCCAAATTTTGTAACTTGGTTTTGATACCACTAAATGTAACACCCCAAACCTGGCCTA
* * *
60054660 AAAGTTATAACCGAATCTGGAGAAATTGCATCGACTTACTTTGAAATTTGATTTCAGTAAGTGTT
196 AAAGTTATAACCGAATCTGGAGAAATTGCATCGACTCACTTGGAAAATTGATTTCAGTAAGTGTT
*
60054725 AAGC-G-AAA-AA-ATT-GAAACCTATTTTTTCGCTTTTAGAAACCACTTAAGAAATTACTTAAT
261 AAGCAGCAAATAACATTAGAAACCTATTTTTTCGCTTTCAGAAACCACTTAAGAAATTACTTAAT
* *
60054785 TTACAACAAAAACCTTTTTAGGAGTTTTAGTTTTAAAAACCAAAATCTATTTTATTAACTTAAGT
326 TTACAACAAAAACCTTTTTAGGAGTTTTAGTTTAAAAAACCAAAATCTATTTTATCAACTTAAGT
*
60054850 GATTTTGCAATCTCACGCTAGAAAATATCAATTACCGACGAATTAAGCAAAACCCGAAACGAGTT
391 GATTTTGCAATCTCACGCTAGAAAATATCAATTACCGACGAATTAAGCAAAACCCAAAACGAGTT
*
60054915 TAGAAACATATTACAAACCCAAAAGATCAAAACATATAATTATGGAATTCATTGTATTTACATTA
456 TAGAAACAGATTACAAACCCAAAAGATCAAAACATATAATTATGGAATTCATTGTATTTACATTA
*
60054980 AGTGCAAAAATAATCTAAGCTCCCACACGCTGTCCGATCCTAAGTCTGAGGTTTACCTGAACAGA
521 AGTGCAAAAATAATCTAAGCTCCCACACGCTGTCCAATCCTAAGTCTGAGGTTTACCTGAACAGA
*
60055045 CAAAGATAAAATAAAAGGGTGAGCTATGAAGCTAATTGTATAACTAAACTCAAACAAAGATCAAA
586 CAAAGATAAAACAAAAGGGTGAGCTATGAAGCTAATTGTATAACTAAACTCAAACAAAGATCAAA
60055110 CAAAACACCATATA
651 CAAAACACCATATA
60055124 CAAAT
1 CAAAT
60055129 AAGAGTAACG
Statistics
Matches: 637, Mismatches: 27, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
659 375 0.59
660 3 0.00
662 2 0.00
663 3 0.00
671 1 0.00
677 253 0.40
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (664 bp):
CAAATCTTAATTATCAAACTAAAAAATAATCAAAATTTGAACACTCTTTTTTCATAAATCCCAAT
TATCAAAGTTAACAAGAAATTCAATTCACTTAAAACATTTTTCAAAGAGATTTTTGAACCCAAAA
ATCACAGTCCAAATTTTGTAACTTGGTTTTGATACCACTAAATGTAACACCCCAAACCTGGCCTA
AAAGTTATAACCGAATCTGGAGAAATTGCATCGACTCACTTGGAAAATTGATTTCAGTAAGTGTT
AAGCAGCAAATAACATTAGAAACCTATTTTTTCGCTTTCAGAAACCACTTAAGAAATTACTTAAT
TTACAACAAAAACCTTTTTAGGAGTTTTAGTTTAAAAAACCAAAATCTATTTTATCAACTTAAGT
GATTTTGCAATCTCACGCTAGAAAATATCAATTACCGACGAATTAAGCAAAACCCAAAACGAGTT
TAGAAACAGATTACAAACCCAAAAGATCAAAACATATAATTATGGAATTCATTGTATTTACATTA
AGTGCAAAAATAATCTAAGCTCCCACACGCTGTCCAATCCTAAGTCTGAGGTTTACCTGAACAGA
CAAAGATAAAACAAAAGGGTGAGCTATGAAGCTAATTGTATAACTAAACTCAAACAAAGATCAAA
CAAAACACCATATA
Found at i:60056915 original size:103 final size:104
Alignment explanation
Indices: 60056736--60057000 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
60056726 AACCGTTATT
* * * *
60056736 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
60056801 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
60056839 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
60056903 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
60056943 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
60057001 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:60058741 original size:14 final size:15
Alignment explanation
Indices: 60058724--60058752 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60058714 CAAAATTAAT
60058724 AGAAAGAA-ATAAAA
1 AGAAAGAACATAAAA
60058738 AGAAAGAACATAAAA
1 AGAAAGAACATAAAA
60058753 GAAGAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.76, C:0.03, G:0.14, T:0.07
Consensus pattern (15 bp):
AGAAAGAACATAAAA
Found at i:60060420 original size:21 final size:20
Alignment explanation
Indices: 60060374--60060421 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
60060364 TTTCATATAG
* *
60060374 GCGTGTGCCTTAGACACACG
1 GCGTGTCCCTTAGACACACA
*
60060394 GCCGTGTCCCTTAGCCACACAA
1 G-CGTGTCCCTTAGACACAC-A
60060416 GCGTGT
1 GCGTGT
60060422 GAGTTTCCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (20 bp):
GCGTGTCCCTTAGACACACA
Found at i:60062800 original size:3 final size:3
Alignment explanation
Indices: 60062754--60062782 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
60062744 AAAGAAAAAT
60062754 GAA GAA GAA GAA GAA GAA GAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
60062783 AAAAAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60065696 original size:13 final size:13
Alignment explanation
Indices: 60065680--60065704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60065670 ATGTATATAA
60065680 TATATATATAAAC
1 TATATATATAAAC
60065693 TATATATATAAA
1 TATATATATAAA
60065705 AAAATATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:60065827 original size:3 final size:3
Alignment explanation
Indices: 60065811--60065869 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
60065801 GTATGTAAGT
* *
60065811 ATA ATA A-A AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ACT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
*
60065855 ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA A
60065870 ACTAAAAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
2 5 0.11
3 41 0.87
4 1 0.02
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:60067422 original size:132 final size:132
Alignment explanation
Indices: 60067185--60067691 Score: 689
Period size: 132 Copynumber: 3.8 Consensus size: 132
60067175 CGCCATCGTC
* * * * *
60067185 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
*
60067250 TTCCTATCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
60067315 AA
131 AA
* *
60067317 GATCTGCTTTCTGCTATCTAATTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
60067382 TTCCTACCCATATAGGAAGGTAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
60067447 AA
131 AA
*
60067449 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
60067514 TTCCTACCAATATGGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
60067579 AA
131 AA
* * * * *** * * * *
60067581 GATCTGC-ATCTTCGATCCT-CTTC-ACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCT
1 GATCTGCTTTCTGCGAT-CTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCC
* * * * * *
60067643 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC
64 ACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
60067692 CTACCAATAT
Statistics
Matches: 337, Mismatches: 35, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
130 21 0.06
131 36 0.11
132 280 0.83
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (132 bp):
GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:60067606 original size:175 final size:176
Alignment explanation
Indices: 60067405--60067809 Score: 670
Period size: 175 Copynumber: 2.3 Consensus size: 176
60067395 AGGAAGGTAG
*
60067405 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
* *
60067470 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATGGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
*
60067535 AGGATCTGCTACCTTCGATCTTCTTCACGCCAATACATGAAGACAA
131 AGGATCTGCTACATTCGATCTTCTTCACGCCAATACATGAAGACAA
*
60067581 GATCTGC-ATCTTCGATCCT-CTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTA
1 GATCTGCTATCTTCGAT-CTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTA
60067644 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGA
65 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGA
60067709 TAGGATCTGCTACATTCGATCTTCTTCACGCCAATACATGAAGACAA
130 TAGGATCTGCTACATTCGATCTTCTTCACGCCAATACATGAAGACAA
* * * * * ***
60067756 TATCTGCTTTCTGCGATCTACTTCGCACCAATATGGGAAGACAAGATCTGCTTT
1 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
60067810 AATGATTTCA
Statistics
Matches: 212, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
175 168 0.79
176 44 0.21
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (176 bp):
GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTAC
TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
AGGATCTGCTACATTCGATCTTCTTCACGCCAATACATGAAGACAA
Found at i:60067735 original size:132 final size:131
Alignment explanation
Indices: 60067257--60067807 Score: 481
Period size: 132 Copynumber: 4.2 Consensus size: 131
60067247 CACTTCCTAT
* * * * * *
60067257 CAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
1 CAATATGGGAAGACAAGATCTGCTACCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCT
* * * * * * *** * * * *
60067322 GCTTTCTGCTAT-CTAATTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC
66 GC-ATCTTCGATCCT-CTTC-ACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTC
60067385 -CTAC
128 GC-AC
* * ** * * * *
60067389 CCATATAGGAAGGTAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT
1 CAATATGGGAAGACAAGATCTGCTACCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCT
* * * * *** * * ** *
60067454 GCTTTCTGCGAT-CTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC
66 GC-ATCTTCGATCCT-CTTC-ACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTC
60067517 -CTAC
128 GC-AC
* * ** * *
60067521 CAATATGGGAAGATAGGATCTGCTACCTTCGATCTTCTTCACGCCAATACATGAAGACAAGATCT
1 CAATATGGGAAGACAAGATCTGCTACCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCT
60067586 GCATCTTCGATCCTCTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTCGCC
66 GCATCTTCGATCCTCTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTCG-C
60067651 AC
130 AC
* * * *
60067653 CAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATC
1 CAATATGGGAAGACAAGATCTGCTACCTTCGATCCACTTCAC-ACCAATACAGGAAGACAAGATC
*
60067716 TGC-TACATTCGATCTTCTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTC
65 TGCAT-C-TTCGATCCTCTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTC
60067780 GCAC
128 GCAC
60067784 CAATATGGGAAGACAAGATCTGCT
1 CAATATGGGAAGACAAGATCTGCT
60067808 TTAATGATTT
Statistics
Matches: 379, Mismatches: 32, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
130 23 0.06
131 83 0.22
132 272 0.72
133 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (131 bp):
CAATATGGGAAGACAAGATCTGCTACCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCT
GCATCTTCGATCCTCTTCACGCCAATACATGAAGACAATATCTGCTTTCTGCGATCTACTTCGCA
C
Found at i:60079896 original size:13 final size:13
Alignment explanation
Indices: 60079880--60079904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60079870 ATGTATATAA
60079880 TATATATATAAAC
1 TATATATATAAAC
60079893 TATATATATAAA
1 TATATATATAAA
60079905 AAAATATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:60080025 original size:3 final size:3
Alignment explanation
Indices: 60080011--60080067 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
60080001 GTATGTAAGT
* *
60080011 ATA ATA AAA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ACT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA
*
60080056 TTA ATA A-A ATA A
1 ATA ATA ATA ATA A
60080068 ACTAAAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 3 0.07
3 41 0.91
4 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:60094899 original size:3 final size:3
Alignment explanation
Indices: 60094891--60094920 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
60094881 ATCAACATTT
60094891 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
60094921 GAATACAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:60101566 original size:34 final size:33
Alignment explanation
Indices: 60101501--60101576 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 33
60101491 ACATATACGT
60101501 ATATTTTTATAACTTGTAACTATATATATACAC
1 ATATTTTTATAACTTGTAACTATATATATACAC
* *
60101534 ATATTTTTATAACTATGT-ACATGTATATATACAT
1 ATATTTTTATAACT-TGTAAC-TATATATATACAC
60101568 ATATATTTT
1 ATAT-TTTT
60101577 TTATTTTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 16 0.42
34 18 0.47
35 4 0.11
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (33 bp):
ATATTTTTATAACTTGTAACTATATATATACAC
Found at i:60103464 original size:27 final size:29
Alignment explanation
Indices: 60103405--60103475 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
60103395 TATTAGATTT
* *
60103405 TTTTCTAATTAATTTTTATAGATTAATTCTA
1 TTTT-TAA-TAATTTTTAGAGATTAATTATA
60103436 TTTTTTAA-AATTTTTAGAGATT-A-TATA
1 -TTTTTAATAATTTTTAGAGATTAATTATA
60103463 TTTTTAATAATTT
1 TTTTTAATAATTT
60103476 CTTTTTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
26 7 0.19
27 8 0.22
28 1 0.03
29 13 0.36
31 3 0.08
32 4 0.11
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTTTAATAATTTTTAGAGATTAATTATA
Found at i:60108530 original size:324 final size:324
Alignment explanation
Indices: 60107941--60108584 Score: 1252
Period size: 324 Copynumber: 2.0 Consensus size: 324
60107931 TATCTACTCC
*
60107941 TTTATGTTGATGACATGTTGATAGCAGCGAAAGATAAAGGTGAGATAAGAAAGGTCAAAGCCCAA
1 TTTATGTTGATGACATGTTGATAGCAGCGAAAGATAAAGGAGAGATAAGAAAGGTCAAAGCCCAA
60108006 CTAAGTAAAGAATTTGAGATGAAAGACTTGGGACCTGCAAAGAAGATACTTGGTATAGAGATTCT
66 CTAAGTAAAGAATTTGAGATGAAAGACTTGGGACCTGCAAAGAAGATACTTGGTATAGAGATTCT
60108071 CAGGGATAGAAAAGTAAGTAAATTGTATCTAAGTCAGAAAAGGTACATTGAGAAAGTTCTTTCCA
131 CAGGGATAGAAAAGTAAGTAAATTGTATCTAAGTCAGAAAAGGTACATTGAGAAAGTTCTTTCCA
*
60108136 GATTTAATATGCAGAATGCTAAGCCTGTTAGTACTCCTTTAGCAGCCCATTTCAGACTTTCATCG
196 GATTTAATATGCAGAATGCTAAGCCTGTTAGTACTCATTTAGCAGCCCATTTCAGACTTTCATCG
60108201 GCTTTGTCTCCACAATCAGATGATGAGATTGAGTACATGTCACATGTTCCATACTCTAGTACAA
261 GCTTTGTCTCCACAATCAGATGATGAGATTGAGTACATGTCACATGTTCCATACTCTAGTACAA
60108265 TTTATGTTGATGACATGTTGATAGCAGCGAAAGATAAAGGAGAGATAAGAAAGGTCAAAGCCCAA
1 TTTATGTTGATGACATGTTGATAGCAGCGAAAGATAAAGGAGAGATAAGAAAGGTCAAAGCCCAA
*
60108330 CTAAGTAAAGAATTTGAGATGAAAGACTTGGGACCTGCAAAGAAGATACTTGGTATGGAGATTCT
66 CTAAGTAAAGAATTTGAGATGAAAGACTTGGGACCTGCAAAGAAGATACTTGGTATAGAGATTCT
*
60108395 CAGGGATAGAAAAGTAAGTAAATTGTATCTAAGTCAGAAAGGGTACATTGAGAAAGTTCTTTCCA
131 CAGGGATAGAAAAGTAAGTAAATTGTATCTAAGTCAGAAAAGGTACATTGAGAAAGTTCTTTCCA
60108460 GATTTAATATGCAGAATGCTAAGCCTGTTAGTACTCATTTAGCAGCCCATTTCAGACTTTCATCG
196 GATTTAATATGCAGAATGCTAAGCCTGTTAGTACTCATTTAGCAGCCCATTTCAGACTTTCATCG
60108525 GCTTTGTCTCCACAATCAGATGATGAGATTGAGTACATGTCACATGTTCCATACTCTAGT
261 GCTTTGTCTCCACAATCAGATGATGAGATTGAGTACATGTCACATGTTCCATACTCTAGT
60108585 GCAGTGGGAT
Statistics
Matches: 316, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
324 316 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (324 bp):
TTTATGTTGATGACATGTTGATAGCAGCGAAAGATAAAGGAGAGATAAGAAAGGTCAAAGCCCAA
CTAAGTAAAGAATTTGAGATGAAAGACTTGGGACCTGCAAAGAAGATACTTGGTATAGAGATTCT
CAGGGATAGAAAAGTAAGTAAATTGTATCTAAGTCAGAAAAGGTACATTGAGAAAGTTCTTTCCA
GATTTAATATGCAGAATGCTAAGCCTGTTAGTACTCATTTAGCAGCCCATTTCAGACTTTCATCG
GCTTTGTCTCCACAATCAGATGATGAGATTGAGTACATGTCACATGTTCCATACTCTAGTACAA
Found at i:60111940 original size:38 final size:39
Alignment explanation
Indices: 60111881--60111958 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
60111871 ATCCAACCCA
*
60111881 ACCCAATTACCCAACCAAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCAAATAAAAATAAAACTAAAGTCT
*
60111920 ACCCAATTA-CCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCAAATAAAAATAAAACTAAAGTCT
60111958 A
1 A
60111959 ACTCTTAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.53, C:0.27, G:0.03, T:0.18
Consensus pattern (39 bp):
ACCCAATTACCCAACCAAATAAAAATAAAACTAAAGTCT
Found at i:60112112 original size:17 final size:17
Alignment explanation
Indices: 60112092--60112154 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
60112082 TAATTTCAAG
60112092 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
60112109 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
60112127 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
60112146 AATTATGTA
1 AATTATGTA
60112155 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:60112116 original size:37 final size:37
Alignment explanation
Indices: 60112089--60112163 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
60112079 TGTTAATTTC
* *
60112089 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
60112126 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
60112163 A
1 A
60112164 TTTTGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:60112180 original size:9 final size:9
Alignment explanation
Indices: 60112168--60112219 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
60112158 ATTCAATTTT
60112168 GGTAATTCG
1 GGTAATTCG
60112177 GGTAATTCG
1 GGTAATTCG
60112186 GGTAATTCG
1 GGTAATTCG
* *
60112195 GTTAATTCA
1 GGTAATTCG
*
60112204 GTTAATTCG
1 GGTAATTCG
*
60112213 GTTAATT
1 GGTAATT
60112220 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (9 bp):
GGTAATTCG
Found at i:60112189 original size:18 final size:18
Alignment explanation
Indices: 60112168--60112219 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
60112158 ATTCAATTTT
* *
60112168 GGTAATTCGGGTAATTCG
1 GGTAATTCGGTTAATTCA
60112186 GGTAATTCGGTTAATTCA
1 GGTAATTCGGTTAATTCA
*
60112204 GTTAATTCGGTTAATT
1 GGTAATTCGGTTAATT
60112220 TTTAACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (18 bp):
GGTAATTCGGTTAATTCA
Found at i:60125043 original size:18 final size:18
Alignment explanation
Indices: 60125006--60125047 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
60124996 TATTTAATTA
*
60125006 AAATATAAATTAAATCTT
1 AAATATAAATTAAATATT
**
60125024 AAATATAAATTTGATATT
1 AAATATAAATTAAATATT
60125042 AAATAT
1 AAATAT
60125048 GTTTAAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (18 bp):
AAATATAAATTAAATATT
Found at i:60127246 original size:17 final size:17
Alignment explanation
Indices: 60127224--60127259 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
60127214 ATTTTGAAGA
60127224 TATAAAATATTGTGCCC
1 TATAAAATATTGTGCCC
60127241 TATAAAATATTGTGCCC
1 TATAAAATATTGTGCCC
60127258 TA
1 TA
60127260 ACTTACTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (17 bp):
TATAAAATATTGTGCCC
Found at i:60131452 original size:16 final size:16
Alignment explanation
Indices: 60131433--60131471 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
60131423 AAAGAAAAGA
60131433 AAAAAGAAAAAAG-AAC
1 AAAAA-AAAAAAGAAAC
*
60131449 AAAAACAAAAAGAAAC
1 AAAAAAAAAAAGAAAC
60131465 AAAAAAA
1 AAAAAAA
60131472 CTTCCACTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAGAAAC
Found at i:60131977 original size:24 final size:22
Alignment explanation
Indices: 60131950--60131999 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
60131940 AAAAAAGAAA
60131950 AAAAAATGAATAAATGAAAAAGT
1 AAAAAATGAA-AAATGAAAAAGT
* *
60131973 GAAAAAATGAAAATTGGAAAAGT
1 -AAAAAATGAAAAATGAAAAAGT
60131996 AAAA
1 AAAA
60132000 TGGAGAGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 10 0.42
24 10 0.42
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (22 bp):
AAAAAATGAAAAATGAAAAAGT
Found at i:60131993 original size:15 final size:16
Alignment explanation
Indices: 60131950--60131985 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
60131940 AAAAAAGAAA
* *
60131950 AAAAAATGAATAAATG
1 AAAAAGTGAAAAAATG
60131966 AAAAAGTGAAAAAATG
1 AAAAAGTGAAAAAATG
60131982 AAAA
1 AAAA
60131986 TTGGAAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAAAGTGAAAAAATG
Found at i:60133452 original size:87 final size:86
Alignment explanation
Indices: 60133361--60133983 Score: 238
Period size: 87 Copynumber: 7.1 Consensus size: 86
60133351 TTGGTGGAGC
60133361 AGATTGAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCGTA-ATTCT
1 AGATTGAAGATGGCAGATTTTACC-TCCTGTGGTTACAGTGGAGTACATTGAAGCCGTAGATTCT
60133425 ATCTCCCTGGTTGGCAGTGGAAT
65 ATCTCCCTGGTT-GCAGTGGAAT
** * * * * * * ** *
60133448 AGATTGAAGATTTCAGATCTTATCTCCT-TAGGCATT--AGTAGAGCAGATCGAAGATGGCAGAT
1 AGATTGAAGATGGCAGATTTTACCTCCTGT-GG--TTACAGTGGAGTACATTGAAG-CCGTAGAT
* * * *
60133510 TTTACCTCCCTGTGGTTACAGTGGAGT
62 TCTATCTCCC--TGGTTGCAGTGGAAT
* ** * * * * * * * ***
60133537 ACATTGAAG-CCGTA-ATTCTATCTCC-CTGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TC
1 AGATTGAAGATGGCAGATTTTACCTCCTGTGGTT-ACAGTGGAGTACATTGAAGCCGT-AGATTC
*
60133598 TTATCTCCCTAGGCATT--AGTGGAGT
64 -TATCTCCCT-GG--TTGCAGTGGAAT
* *
60133623 AGATCGAAGATGGAAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGTA-ATTCT
1 AGATTGAAGATGGCAGATTTTACCT-CCTGTGGTTACAGTGGAGTACATTGAAGCCGTAGATTCT
60133687 ATCTCCCTGGTTGGCAGTGGAAT
65 ATCTCCCTGGTT-GCAGTGGAAT
** * * * * ** ** *
60133710 AGATTGAAGATTTCAGATCTTATCTCC-GTAGGCATT--AGTAGAGTAGATCAAAGATGGCAGAT
1 AGATTGAAGATGGCAGATTTTACCTCCTGT-GG--TTACAGTGGAGTACATTGAAG-CCGTAGAT
* * * * *
60133772 TTTACCTCTCTGAGGTTACAGTGGAGT
62 TCTATCTCCCT--GGTTGCAGTGGAAT
* *** * * * * * * * ***
60133799 ACATTGAAGCCAGTA-ATTCTATCTCC-CTGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TC
1 AGATTGAAGATGGCAGATTTTACCTCCTGTGGTT-ACAGTGGAGTACATTGAAGCCGT-AGATTC
* ** * **
60133861 TTATCTCCCTAAGCGGTAGTGGAGC
64 -TATCTCCCT-GGTTGCAGTGGAAT
* *
60133886 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGAAGTACATTGAAGCCGTA-ATTCT
1 AGATTGAAGATGGCAGATTTTACCT-CCTGTGGTTACAGTGGAGTACATTGAAGCCGTAGATTCT
*
60133950 ATCTCCCTAGTTGGCAGTGGAAT
65 ATCTCCCTGGTT-GCAGTGGAAT
60133973 AGATTGAAGAT
1 AGATTGAAGAT
60133984 TTTAGATCTT
Statistics
Matches: 382, Mismatches: 113, Indels: 82
0.66 0.20 0.14
Matches are distributed among these distances:
84 4 0.01
85 6 0.02
86 60 0.16
87 143 0.37
88 80 0.21
89 70 0.18
90 19 0.05
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (86 bp):
AGATTGAAGATGGCAGATTTTACCTCCTGTGGTTACAGTGGAGTACATTGAAGCCGTAGATTCTA
TCTCCCTGGTTGCAGTGGAAT
Found at i:60133522 original size:131 final size:131
Alignment explanation
Indices: 60133287--60134324 Score: 1572
Period size: 131 Copynumber: 7.9 Consensus size: 131
60133277 TCGAAGATAC
** * * *
60133287 TAATTCTATCTCCCTTATTGGCAATGGGATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
* * *
60133352 TGGTGGAGCAGATTGAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60133417 G
131 G
* *
60133418 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCTTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
*
60133483 TAGTAGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60133548 G
131 G
*
60133549 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
* *
60133614 TAGTGGAGTAGATCGAAGATGGAAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60133679 G
131 G
* *
60133680 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCGTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
* * * * *
60133745 TAGTAGAGTAGATCAAAGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60133810 AG
131 -G
* *
60133812 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
*
60133877 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGAAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60133942 G
131 G
* *
60133943 TAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAGGCAG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
* *
60134008 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60134073 AG
131 -G
*** * * *
60134075 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAGGATTACAGATCTTATCTCCCTAAGCAG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
** * *
60134140 TAGTGGAGCAGATTAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
60134205 AG
131 -G
* *** * * * *
60134207 TAATTCTATCTCCCTAGACAGCAGTGGAATTGATTGAAGATTTCAGATCTTGTCTCCCCAAGCAG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
* * * * ** *
60134272 TAGTAGAGCAGGTCAAAGATAGCAGATTTTACCTCCCTGAAGTTGCAGTGGAG
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAG
60134325 CAGACAGAAG
Statistics
Matches: 841, Mismatches: 64, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
131 497 0.59
132 344 0.41
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (131 bp):
TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAG
TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
G
Found at i:60133576 original size:42 final size:42
Alignment explanation
Indices: 60133391--60134111 Score: 189
Period size: 44 Copynumber: 16.5 Consensus size: 42
60133381 TACCTTCCTG
* *
60133391 TGGTTACAGTGGAGTACATTGAAGCCGTA-ATTCTATCTCCC
1 TGGTTGCAGTGGAGTAGATTGAAGCCGTAGATTCTATCTCCC
* *** *
60133432 TGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TCTTATCTCCT
1 TGGTT-GCAGTGGAGTAGATTGAAGCCGT-AGATTC-TATCTCCC
* * * ** * * *
60133476 TAGGCATT--AGTAGAGCAGATCGAAGATGGCAGATTTTACCTCCC
1 T-GG--TTGCAGTGGAGTAGATTGAAG-CCGTAGATTCTATCTCCC
* *
60133520 TGTGGTTACAGTGGAGTACATTGAAGCCGTA-ATTCTATCTCCC
1 --TGGTTGCAGTGGAGTAGATTGAAGCCGTAGATTCTATCTCCC
* ***
60133563 TGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TCTTATCTCCC
1 TGGTT-GCAGTGGAGTAGATTGAAGCCGT-AGATTC-TATCTCCC
* ** * * *
60133607 TAGGCATT--AGTGGAGTAGATCGAAGATGGAAGATTTTACCTCCC
1 T-GG--TTGCAGTGGAGTAGATTGAAG-CCGTAGATTCTATCTCCC
* *
60133651 TGTGGTTACAGTGGAGTACATTGAAGCCGTA-ATTCTATCTCCC
1 --TGGTTGCAGTGGAGTAGATTGAAGCCGTAGATTCTATCTCCC
* *** *
60133694 TGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TCTTATCTCCG
1 TGGTT-GCAGTGGAGTAGATTGAAGCCGT-AGATTC-TATCTCCC
* ** ** * * * *
60133738 TAGGCATT--AGTAGAGTAGATCAAAGATGGCAGATTTTACCTCTC
1 T-GG--TTGCAGTGGAGTAGATTGAAG-CCGTAGATTCTATCTCCC
* *
60133782 TGAGGTTACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCC
1 T--GGTTGCAGTGGAGTAGATTGAAGCC-GTAGATTCTATCTCCC
* ***
60133826 TGGTTGGCAGTGGAATAGATTGAAGATTTCAGA-TCTTATCTCCC
1 TGGTT-GCAGTGGAGTAGATTGAAGCCGT-AGATTC-TATCTCCC
* ** * * * ** * * *
60133870 TAAGCGGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCC
1 T-GGTTGCAGTGGAGTAGATTGAAG-CCGTAGATTCTATCTCCC
* * *
60133914 TGTGGTTACAGTGAAGTACATTGAAGCCGTA-ATTCTATCTCCC
1 --TGGTTGCAGTGGAGTAGATTGAAGCCGTAGATTCTATCTCCC
* * ***
60133957 TAGTTGGCAGTGGAATAGATTGAAGATTTTAGA-TCTTATCTCCC
1 TGGTT-GCAGTGGAGTAGATTGAAG-CCGTAGATTC-TATCTCCC
** * * ** * * *
60134001 TAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCC
1 T-GGTTGCAGTGGAGTAGATTGAAG-CCGTAGATTCTATCTCCC
* *
60134045 TATGGTTACAGTGGAGTACATTGAAGCCAGTA-ATTCTATCTCCC
1 --TGGTTGCAGTGGAGTAGATTGAAGCC-GTAGATTCTATCTCCC
** *
60134089 TGGGCAGCAGTGGAATAGATTGA
1 T-GGTTGCAGTGGAGTAGATTGA
60134112 GGATTACAGA
Statistics
Matches: 477, Mismatches: 145, Indels: 114
0.65 0.20 0.15
Matches are distributed among these distances:
41 19 0.04
42 72 0.15
43 84 0.18
44 196 0.41
45 96 0.20
46 4 0.01
47 6 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGGTTGCAGTGGAGTAGATTGAAGCCGTAGATTCTATCTCCC
Found at i:60133967 original size:263 final size:263
Alignment explanation
Indices: 60133287--60134324 Score: 1603
Period size: 263 Copynumber: 3.9 Consensus size: 263
60133277 TCGAAGATAC
** * * * *
60133287 TAATTCTATCTCCCTTATTGGCAATGGGATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
* * *
60133352 TGGTGGAGCAGATTGAAGATGGCAGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* *
60133417 GTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCTTAGGCA
131 GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCA
* * *
60133482 TTAGTAGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
196 GTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
60133547 C-G
261 CAG
* *
60133549 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
* *
60133614 TAGTGGAGTAGATCGAAGATGGAAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* *
60133679 GTAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCGTAGGCA
131 GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCA
* * *
60133744 TTAGTAGAGTAGATCAAAGATGGCAGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTGAAGC
196 GTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
60133809 CAG
261 CAG
*
60133812 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
*
60133877 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGAAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
*
60133942 GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAGGCA
131 GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCA
* * *
60134007 GTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCT-ATGGTTACAGTGGAGTACATTGAAG
196 GTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAG
60134071 CCAG
260 CCAG
*** * *
60134075 TAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAGGATTACAGATCTTATCTCCCTAAGCAG
1 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
** * *
60134140 TAGTGGAGCAGATTAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
*** * * * *
60134205 AGTAATTCTATCTCCCTAGACAGCAGTGGAATTGATTGAAGATTTCAGATCTTGTCTCCCCAAGC
131 -GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGC
* * * *
60134270 AGTAGTAGAGCAGGTCAAAGATAGCAGATTTTACCTCCCTGAAGTTGCAGTGGAG
195 AGTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAG
60134325 CAGACAGAAG
Statistics
Matches: 719, Mismatches: 53, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
262 248 0.34
263 368 0.51
264 102 0.14
265 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (263 bp):
TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
GTAATTCTATCTCCCTAGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCA
GTAGTAGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
CAG
Found at i:60152032 original size:14 final size:14
Alignment explanation
Indices: 60152013--60152045 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
60152003 TTGACTATAA
60152013 ATTTTGATTTTTTG
1 ATTTTGATTTTTTG
60152027 ATTTTGATTTTTTG
1 ATTTTGATTTTTTG
*
60152041 GTTTT
1 ATTTT
60152046 TATGGTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (14 bp):
ATTTTGATTTTTTG
Found at i:60152665 original size:26 final size:26
Alignment explanation
Indices: 60152636--60152688 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
60152626 AAATTTAGTT
* *
60152636 TTTAATGTTTATCTTTTTT-TTATCAA
1 TTTAATCTTTAT-TTTTTTGTGATCAA
60152662 TTTAATCTTTATTTTTTTGTGATCAA
1 TTTAATCTTTATTTTTTTGTGATCAA
60152688 T
1 T
60152689 CTTATAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.64
Consensus pattern (26 bp):
TTTAATCTTTATTTTTTTGTGATCAA
Found at i:60155551 original size:17 final size:16
Alignment explanation
Indices: 60155529--60155571 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
60155519 TCTTAAAATA
60155529 TTAATTAATAACTTAAT
1 TTAATTAATAA-TTAAT
*
60155546 TTAATTAACTAATTAGT
1 TTAATTAA-TAATTAAT
*
60155563 TAAATTAAT
1 TTAATTAAT
60155572 TTCACAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 19 0.83
18 3 0.13
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (16 bp):
TTAATTAATAATTAAT
Found at i:60155553 original size:21 final size:21
Alignment explanation
Indices: 60155520--60155572 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
60155510 TTTTCTATTT
* *
60155520 CTTAAAAT-ATTAATTAATAA
1 CTTAAATTAATTAACTAATAA
* *
60155540 CTTAATTTAATTAACTAATTA
1 CTTAAATTAATTAACTAATAA
*
60155561 GTTAAATTAATT
1 CTTAAATTAATT
60155573 TCACAATTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (21 bp):
CTTAAATTAATTAACTAATAA
Found at i:60156784 original size:27 final size:27
Alignment explanation
Indices: 60156754--60156806 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
60156744 TTAATAGTGA
60156754 GTATTTTATATGTCAAACTTAATCAAT
1 GTATTTTATATGTCAAACTTAATCAAT
60156781 GTATTTTATATGTCAAACTTAATCAA
1 GTATTTTATATGTCAAACTTAATCAA
60156807 AATTAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (27 bp):
GTATTTTATATGTCAAACTTAATCAAT
Found at i:60162579 original size:15 final size:15
Alignment explanation
Indices: 60162560--60162661 Score: 77
Period size: 15 Copynumber: 7.0 Consensus size: 15
60162550 ATACATAAGC
*
60162560 AGGGTTTGCACATAC
1 AGGGTTTGCACATAT
60162575 AGGGTTCT-CACATAT
1 AGGGTT-TGCACATAT
*
60162590 AGGATTT-CACATAT
1 AGGGTTTGCACATAT
* * *
60162604 -GGGTTAGCGCATGT
1 AGGGTTTGCACATAT
*
60162618 AGGGTTTGCACCTA-
1 AGGGTTTGCACATAT
* * * *
60162632 GGGGTTCGTACATGT
1 AGGGTTTGCACATAT
60162647 AGGGTTTGCACATAT
1 AGGGTTTGCACATAT
60162662 GCTACAGTTC
Statistics
Matches: 64, Mismatches: 19, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
13 4 0.06
14 22 0.34
15 37 0.58
16 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (15 bp):
AGGGTTTGCACATAT
Found at i:60168733 original size:3 final size:3
Alignment explanation
Indices: 60168725--60168763 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
60168715 TACAAGAGAG
60168725 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
60168764 AACTACGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60169073 original size:18 final size:18
Alignment explanation
Indices: 60169050--60169091 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
60169040 TTCTTTTTGG
60169050 AATTTTAGGTTTGTAGAA
1 AATTTTAGGTTTGTAGAA
*
60169068 AATTTTAGGTTTTTAGAA
1 AATTTTAGGTTTGTAGAA
60169086 AATTTT
1 AATTTT
60169092 GGAATTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (18 bp):
AATTTTAGGTTTGTAGAA
Found at i:60169099 original size:18 final size:18
Alignment explanation
Indices: 60169050--60169100 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
60169040 TTCTTTTTGG
60169050 AATTTTAGG-TTTGTAGAA
1 AATTTTAGGATTT-TAGAA
*
60169068 AATTTTAGGTTTTTAGAA
1 AATTTTAGGATTTTAGAA
60169086 AATTTT-GGAATTTTA
1 AATTTTAGG-ATTTTA
60169101 TTAAAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 2 0.07
18 25 0.83
19 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (18 bp):
AATTTTAGGATTTTAGAA
Found at i:60169204 original size:18 final size:21
Alignment explanation
Indices: 60169159--60169198 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60169149 TAAAAATTAC
60169159 CATAAAATTCTTAAATTTTTT
1 CATAAAATTCTTAAATTTTTT
*
60169180 CATAAAATTC-TATATTTTT
1 CATAAAATTCTTAAATTTTT
60169199 ATAAAACCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (21 bp):
CATAAAATTCTTAAATTTTTT
Found at i:60169691 original size:131 final size:134
Alignment explanation
Indices: 60169398--60169694 Score: 294
Period size: 134 Copynumber: 2.2 Consensus size: 134
60169388 ATATATATTT
* *
60169398 GGAATTTTAAT-ATTTTTTAG--TTTTTTATATTTTTAAAATTTTTAAGTGAATTTGAAATAGAT
1 GGAATTTAAATGATGTTTTAGTTTTTTTTATATTTTTAAAATTTTTAAGTGAATTTGAAATAGAT
* * * * *
60169460 TAATATTTTGATTTTGTTTTAAATTTCAGAATTTTAAGATTTTTCTGGATTTAAAAAAAAATGTT
66 TAAGATTTTGATATTGTTTT--ATTT-AGAAGTTTAAGATTTTTCGGGATTTAAAAAAAAATGTA
60169525 TTTTTGG
128 TTTTTGG
* *
60169532 GGAATTTTAATGATTTGTTTTAGTTTTTTTTATATTTTTTAAA-TTTTAAGTGAATTTGAAATAG
1 GGAATTTAAATGA--TGTTTTAGTTTTTTTTATATTTTTAAAATTTTTAAGTGAATTTGAAATAG
** *
60169596 ATTAAGATTTT-ATATT-TTTT-TTT-GTGGTTTAAGATTTTT-GGGACTCTTTTAAAAAAATTA
64 ATTAAGATTTTGATATTGTTTTATTTAGAAGTTTAAGATTTTTCGGGA----TTTAAAAAAA-AA
*
60169656 TG-ATTTTTGT
124 TGTATTTTTGG
60169666 GGAATTTAAATGA-GTTCTTA-TTTTTTTTA
1 GGAATTTAAATGATGTT-TTAGTTTTTTTTA
60169695 AATAATTTTT
Statistics
Matches: 140, Mismatches: 12, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
130 3 0.02
131 25 0.18
132 3 0.02
133 3 0.02
134 39 0.28
135 4 0.03
136 4 0.03
137 11 0.08
138 31 0.22
139 17 0.12
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.55
Consensus pattern (134 bp):
GGAATTTAAATGATGTTTTAGTTTTTTTTATATTTTTAAAATTTTTAAGTGAATTTGAAATAGAT
TAAGATTTTGATATTGTTTTATTTAGAAGTTTAAGATTTTTCGGGATTTAAAAAAAAATGTATTT
TTGG
Found at i:60176962 original size:9 final size:9
Alignment explanation
Indices: 60176948--60177013 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 9
60176938 ACAATTAATT
60176948 AATTTTTAA
1 AATTTTTAA
60176957 AATTTTTAAAA
1 AATTTTT--AA
60176968 TATATTTTTAA
1 -A-ATTTTTAA
60176979 AATTTTTAA
1 AATTTTTAA
60176988 AATGATTTT-A
1 AAT--TTTTAA
60176998 AA-TTTTAA
1 AATTTTTAA
60177006 AATATTTT
1 AAT-TTTT
60177014 TTATATATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 17
0.74 0.00 0.26
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
9 18 0.38
10 8 0.17
11 8 0.17
12 1 0.02
13 6 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
AATTTTTAA
Found at i:60176974 original size:22 final size:22
Alignment explanation
Indices: 60176949--60177016 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 22
60176939 CAATTAATTA
60176949 ATTTTTAAAATTTTTAAAATAT
1 ATTTTTAAAATTTTTAAAATAT
*
60176971 ATTTTTAAAATTTTTAAAAT-G
1 ATTTTTAAAATTTTTAAAATAT
60176992 A-TTTT-AAA-TTTTAAAATAT
1 ATTTTTAAAATTTTTAAAATAT
60177011 -TTTTTA
1 ATTTTTA
60177017 TATATTTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 9 0.22
19 7 0.17
20 4 0.10
21 1 0.02
22 20 0.49
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (22 bp):
ATTTTTAAAATTTTTAAAATAT
Found at i:60178418 original size:18 final size:17
Alignment explanation
Indices: 60178380--60178418 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
60178370 AATTTTTCAT
*
60178380 AATTTCGTAAATTACTA
1 AATTTCGTAAAATACTA
*
60178397 AATTTCGTAAAAATACTG
1 AATTTCGT-AAAATACTA
60178415 AATT
1 AATT
60178419 ACTAAAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (17 bp):
AATTTCGTAAAATACTA
Found at i:60178433 original size:26 final size:28
Alignment explanation
Indices: 60178389--60178449 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
60178379 TAATTTCGTA
**
60178389 AATTACTAAATTTCGTAAA-AA-TACTG
1 AATTACTAAAACTCGTAAAGAATTACTG
* *
60178415 AATTACTAAAACTCTTAAAGAATTATTG
1 AATTACTAAAACTCGTAAAGAATTACTG
60178443 AATTACT
1 AATTACT
60178450 GATAGAATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 16 0.55
27 2 0.07
28 11 0.38
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (28 bp):
AATTACTAAAACTCGTAAAGAATTACTG
Found at i:60179249 original size:16 final size:15
Alignment explanation
Indices: 60179198--60179250 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
60179188 GGAGTGGAAA
*
60179198 GAAAATTGGAAAGATG
1 GAAAATT-GAAGGATG
* *
60179214 GAAAATTGAAGGGGTT
1 GAAAATTGAA-GGATG
60179230 GAAAATTAGAAGGATG
1 GAAAATT-GAAGGATG
60179246 GAAAA
1 GAAAA
60179251 CATAAATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.10
16 24 0.80
17 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.19
Consensus pattern (15 bp):
GAAAATTGAAGGATG
Found at i:60187651 original size:9 final size:9
Alignment explanation
Indices: 60187637--60187668 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
60187627 AACTATGACG
60187637 TAATATTTA
1 TAATATTTA
60187646 TAATATTTA
1 TAATATTTA
60187655 TAATATTTA
1 TAATATTTA
60187664 TAATA
1 TAATA
60187669 ATTTTTAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TAATATTTA
Found at i:60190370 original size:27 final size:28
Alignment explanation
Indices: 60190318--60190370 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
60190308 TCATACTTTG
*
60190318 TTTTTTGAATTTTTATAATTTTTTTTTA
1 TTTTTTGAATTTTTATAATTTATTTTTA
60190346 TTTTTT-AATTTTTA-AATTATATTTT
1 TTTTTTGAATTTTTATAATT-TATTTT
60190371 GGTGTGGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 13 0.57
28 6 0.26
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (28 bp):
TTTTTTGAATTTTTATAATTTATTTTTA
Found at i:60191006 original size:10 final size:10
Alignment explanation
Indices: 60190980--60191059 Score: 58
Period size: 10 Copynumber: 8.1 Consensus size: 10
60190970 ATTCATTTCG
60190980 AAATTATAAA
1 AAATTATAAA
60190990 AAA--ATAAA
1 AAATTATAAA
60190998 AAATTATAAA
1 AAATTATAAA
* * *
60191008 ATATAAT-TA
1 AAATTATAAA
60191017 AAATTATAACA
1 AAATTATAA-A
*
60191028 AAATTATTAA
1 AAATTATAAA
**
60191038 ATTTTATAAA
1 AAATTATAAA
*
60191048 ATTATTATAAA
1 A-AATTATAAA
60191059 A
1 A
60191060 TTATTAAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
8 8 0.15
9 6 0.11
10 22 0.41
11 18 0.33
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (10 bp):
AAATTATAAA
Found at i:60191008 original size:9 final size:9
Alignment explanation
Indices: 60190980--60191072 Score: 55
Period size: 9 Copynumber: 9.8 Consensus size: 9
60190970 ATTCATTTCG
60190980 AAATTATAA
1 AAATTATAA
*
60190989 AAA-AATAAA
1 AAATTAT-AA
60190998 AAATTATAA
1 AAATTATAA
* *
60191007 AATATAATTA
1 AA-ATTATAA
60191017 AAATTATAACA
1 AAATTAT-A-A
*
60191028 AAATTAT-T
1 AAATTATAA
*
60191036 AAATTTTATA
1 AAATTATA-A
60191046 AAATTATTATA
1 AAATTA-TA-A
*
60191057 AAATTATTA
1 AAATTATAA
60191066 AAATTAT
1 AAATTAT
60191073 TTTTTAAAAG
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
8 8 0.12
9 24 0.37
10 15 0.23
11 18 0.28
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (9 bp):
AAATTATAA
Found at i:60191025 original size:29 final size:28
Alignment explanation
Indices: 60190993--60191069 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 28
60190983 TTATAAAAAA
60190993 ATAAAAAATTATAAAATATAATTAAAATT
1 ATAAAAAATTATAAAATATAA-TAAAATT
* * *
60191022 ATAACAAAATTATTAAATTTTATAAAATT
1 ATAA-AAAATTATAAAATATAATAAAATT
*
60191051 ATTATAAAATTATTAAAAT
1 A-TAAAAAATTA-TAAAAT
60191070 TATTTTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 19 0.47
30 21 0.52
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (28 bp):
ATAAAAAATTATAAAATATAATAAAATT
Found at i:60191057 original size:11 final size:11
Alignment explanation
Indices: 60191000--60191109 Score: 74
Period size: 11 Copynumber: 10.4 Consensus size: 11
60190990 AAAATAAAAA
60191000 ATTATAAAA-T
1 ATTATAAAATT
*
60191010 ATAATTAAAATT
1 ATTA-TAAAATT
* *
60191022 ATAACAAAATT
1 ATTATAAAATT
60191033 A-T-T-AAATT
1 ATTATAAAATT
60191041 -TTATAAAATT
1 ATTATAAAATT
60191051 ATTATAAAATT
1 ATTATAAAATT
60191062 A-T-TAAAATT
1 ATTATAAAATT
*
60191071 ATTTTTTAAAAGTT
1 A--TTATAAAA-TT
* *
60191085 TTTTTAAAATT
1 ATTATAAAATT
60191096 ATTA-AAAATT
1 ATTATAAAATT
60191106 ATTA
1 ATTA
60191110 AAACGTATAA
Statistics
Matches: 82, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
8 6 0.07
9 9 0.11
10 19 0.23
11 27 0.33
12 14 0.17
13 5 0.06
14 2 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (11 bp):
ATTATAAAATT
Found at i:60191081 original size:13 final size:13
Alignment explanation
Indices: 60191063--60191098 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
60191053 TATAAAATTA
60191063 TTAAAATTATTTT
1 TTAAAATTATTTT
*
60191076 TTAAAAGT-TTTT
1 TTAAAATTATTTT
60191088 TTAAAATTATT
1 TTAAAATTATT
60191099 AAAAATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
TTAAAATTATTTT
Found at i:60191098 original size:34 final size:34
Alignment explanation
Indices: 60191038--60191108 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
60191028 AAATTATTAA
60191038 ATTTTATAAAATTATTATAAAATTATT-AAAATT
1 ATTTTATAAAATTATTATAAAATTATTAAAAATT
* * *
60191071 ATTTTTTAAAAGTTTTTTTAAAATTATTAAAAATT
1 ATTTTATAAAA-TTATTATAAAATTATTAAAAATT
60191106 ATT
1 ATT
60191109 AAAACGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 10 0.30
34 14 0.42
35 9 0.27
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (34 bp):
ATTTTATAAAATTATTATAAAATTATTAAAAATT
Found at i:60191386 original size:28 final size:29
Alignment explanation
Indices: 60191343--60191416 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
60191333 AAAAGCTGTG
*
60191343 TTTTAATTTATTTTATAA-AATTTTATGAT
1 TTTTAA-TTAATTTATAATAATTTTATGAT
*
60191372 TTTTAATTAATTTATAATAATTTTATTAT
1 TTTTAATTAATTTATAATAATTTTATGAT
*
60191401 TTTTTA-TAATTT-TAAT
1 TTTTAATTAATTTATAAT
60191417 TATTCTTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 4 0.10
28 16 0.39
29 21 0.51
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTTAATTAATTTATAATAATTTTATGAT
Found at i:60191402 original size:18 final size:19
Alignment explanation
Indices: 60191372--60191420 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
60191362 ATTTTATGAT
60191372 TTTTAATTAATTTATAATAA
1 TTTTAATT-ATTTATAATAA
* *
60191392 TTTT-ATTATTTTTTATAA
1 TTTTAATTATTTATAATAA
60191410 TTTTAATTATT
1 TTTTAATTATT
60191421 CTTTATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 13 0.50
19 9 0.35
20 4 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAATTATTTATAATAA
Found at i:60191418 original size:19 final size:19
Alignment explanation
Indices: 60191372--60191432 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
60191362 ATTTTATGAT
* *
60191372 TTTTAATTAATTTATAATAA
1 TTTTAATT-ATTTTTTATAA
60191392 TTTT-ATTATTTTTTATAA
1 TTTTAATTATTTTTTATAA
*
60191410 TTTTAATTATTCTTTATAA
1 TTTTAATTATTTTTTATAA
60191429 TTTT
1 TTTT
60191433 TTTTCTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
18 13 0.35
19 20 0.54
20 4 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTAATTATTTTTTATAA
Found at i:60191445 original size:18 final size:17
Alignment explanation
Indices: 60191388--60191448 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
60191378 TTAATTTATA
*
60191388 ATAATTTTATTATTTTTT
1 ATAATTTT-TTTTTTTTT
* *
60191406 ATAATTTTAATTATTCTTT
1 ATAATTTT--TTTTTTTTT
60191425 ATAATTTTTTTTCTTTTT
1 ATAATTTTTTTT-TTTTT
60191443 ATAATT
1 ATAATT
60191449 CCATGATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 3 0.08
18 18 0.47
19 17 0.45
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
ATAATTTTTTTTTTTTT
Found at i:60194071 original size:2 final size:2
Alignment explanation
Indices: 60194066--60194102 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
60194056 ACTGTAAAAA
60194066 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
60194103 CCAAATTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:60201754 original size:31 final size:29
Alignment explanation
Indices: 60201716--60201785 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
60201706 ATCCCAAAAC
*
60201716 TATACATGAACTATGGTTTAATATGTAATTG
1 TATACATGAACTATGATTT--TATGTAATTG
* * *
60201747 TATACATGAACTTTGATTTTGTGTAATTT
1 TATACATGAACTATGATTTTATGTAATTG
60201776 TATACATGAA
1 TATACATGAA
60201786 ATTTTGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 18 0.51
31 17 0.49
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.44
Consensus pattern (29 bp):
TATACATGAACTATGATTTTATGTAATTG
Found at i:60201780 original size:29 final size:30
Alignment explanation
Indices: 60201716--60201795 Score: 90
Period size: 31 Copynumber: 2.6 Consensus size: 30
60201706 ATCCCAAAAC
* *
60201716 TATACATGAACTATGGTTTAATATGTAATTG
1 TATACATGAACTTTGATTT-ATATGTAATTG
* *
60201747 TATACATGAACTTTGATTT-TGTGTAATTT
1 TATACATGAACTTTGATTTATATGTAATTG
*
60201776 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
60201796 GATCCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 16 0.37
30 10 0.23
31 17 0.40
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (30 bp):
TATACATGAACTTTGATTTATATGTAATTG
Found at i:60206751 original size:18 final size:18
Alignment explanation
Indices: 60206728--60206764 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
60206718 GAATTCTGGG
*
60206728 CCCACATGCCCGTGTGGC
1 CCCACACGCCCGTGTGGC
60206746 CCCACACGCCCGTGTGGC
1 CCCACACGCCCGTGTGGC
60206764 C
1 C
60206765 TACTAGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.49, G:0.27, T:0.14
Consensus pattern (18 bp):
CCCACACGCCCGTGTGGC
Found at i:60207957 original size:18 final size:18
Alignment explanation
Indices: 60207934--60207977 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
60207924 ATCCTCCTAT
60207934 TTATGGGTTGGA-GAGGGG
1 TTATGGGTT-GATGAGGGG
60207952 TTATGGGTTGATGAGGGG
1 TTATGGGTTGATGAGGGG
60207970 TTATGGGT
1 TTATGGGT
60207978 AGTTCTTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.16, C:0.00, G:0.50, T:0.34
Consensus pattern (18 bp):
TTATGGGTTGATGAGGGG
Found at i:60208298 original size:9 final size:9
Alignment explanation
Indices: 60208284--60208316 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
60208274 ACCATATACT
60208284 AATTTATAA
1 AATTTATAA
60208293 AATTTATAA
1 AATTTATAA
60208302 AATTTATAA
1 AATTTATAA
60208311 AATTTA
1 AATTTA
60208317 AAACGCTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTTATAA
Found at i:60208454 original size:14 final size:14
Alignment explanation
Indices: 60208435--60208469 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
60208425 AAGCTTTATT
60208435 TTAAATTCATCAAG
1 TTAAATTCATCAAG
*
60208449 TTAAATTTATCAAG
1 TTAAATTCATCAAG
*
60208463 TCAAATT
1 TTAAATT
60208470 TTTAGTTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (14 bp):
TTAAATTCATCAAG
Done.