Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 193 of 208
Found at i:60209470 original size:17 final size:16
Alignment explanation
Indices: 60209436--60209470 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
60209426 TAATTAATTT
60209436 TTTAAAATTTAAAAAA
1 TTTAAAATTTAAAAAA
*
60209452 TTTAAAATATTATAAAA
1 TTTAAAAT-TTAAAAAA
60209469 TT
1 TT
60209471 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTAAAATTTAAAAAA
Found at i:60210711 original size:14 final size:14
Alignment explanation
Indices: 60210688--60210721 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60210678 GCTTTATTTT
*
60210688 AAATTGATCAAGTA
1 AAATTTATCAAGTA
*
60210702 AAATTTATCAAGTC
1 AAATTTATCAAGTA
60210716 AAATTT
1 AAATTT
60210722 TGAGTTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (14 bp):
AAATTTATCAAGTA
Found at i:60212841 original size:15 final size:17
Alignment explanation
Indices: 60212811--60212848 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
60212801 TAAATTAATA
*
60212811 TAAAATACATTAAAAAT
1 TAAAATACATTAAAAAC
60212828 TAAAATA-ATT-AAAAC
1 TAAAATACATTAAAAAC
60212843 TAAAAT
1 TAAAAT
60212849 TGATTCATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 3 0.15
17 7 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATACATTAAAAAC
Found at i:60213173 original size:21 final size:20
Alignment explanation
Indices: 60213131--60213175 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
60213121 ATTTACATAT
* *
60213131 AAATACAAAATTACAAATCC
1 AAATAAAAAATTACAAACCC
*
60213151 AAATAAAAATATTACAAGCCC
1 AAATAAAAA-ATTACAAACCC
60213172 AAAT
1 AAAT
60213176 GTAAAAAGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.60, C:0.18, G:0.02, T:0.20
Consensus pattern (20 bp):
AAATAAAAAATTACAAACCC
Found at i:60215813 original size:18 final size:18
Alignment explanation
Indices: 60215792--60215826 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
60215782 AGAATTATAG
60215792 ATAATAT-TACATATAAGC
1 ATAATATATACAT-TAAGC
60215810 ATAATATATACATTAAG
1 ATAATATATACATTAAG
60215827 GATGTGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.51, C:0.09, G:0.06, T:0.34
Consensus pattern (18 bp):
ATAATATATACATTAAGC
Found at i:60216514 original size:33 final size:33
Alignment explanation
Indices: 60216470--60216546 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
60216460 TAGATACATG
** * *
60216470 TGTAAGACCATAGCTGGGTTATGGCA-TTCTAA
1 TGTAAGACCATAAATGGGTTATGGCACTACAAA
60216502 TGATAAGACCATAAATGGGTTATGGCACTACAAA
1 TG-TAAGACCATAAATGGGTTATGGCACTACAAA
60216536 TGTAAGACCAT
1 TGTAAGACCAT
60216547 GGTAGGGCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
32 2 0.05
33 31 0.79
34 6 0.15
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (33 bp):
TGTAAGACCATAAATGGGTTATGGCACTACAAA
Found at i:60217253 original size:13 final size:13
Alignment explanation
Indices: 60217231--60217291 Score: 104
Period size: 13 Copynumber: 4.7 Consensus size: 13
60217221 AGATTTTCAT
60217231 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
60217244 TGCTTCTGAGAAG
1 TGCTTTTGAGAAG
60217257 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
60217270 TGCTTTTTAGAAG
1 TGCTTTTGAGAAG
60217283 TGCTTTTGA
1 TGCTTTTGA
60217292 AAAATTTGAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.21, C:0.10, G:0.28, T:0.41
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:60219853 original size:10 final size:10
Alignment explanation
Indices: 60219830--60219864 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
60219820 AAACATAAAT
60219830 AGAAAAAAGAA
1 AGAAAAAAG-A
60219841 AGAAAAAAGA
1 AGAAAAAAGA
60219851 AGAAAAAAGA
1 AGAAAAAAGA
60219861 AGAA
1 AGAA
60219865 GAAGCAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AGAAAAAAGA
Found at i:60220464 original size:29 final size:30
Alignment explanation
Indices: 60220432--60220489 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
60220422 CTCCAATTTC
*
60220432 ACCAGCAGAGGGGAAAGAAA-ATTTGGGGA
1 ACCAGCAGAGGGGAAAAAAACATTTGGGGA
60220461 ACCAGCAGAGGGGAAAAAAACATTTGGGG
1 ACCAGCAGAGGGGAAAAAAACATTTGGGG
60220490 GAGAATTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.41, C:0.12, G:0.36, T:0.10
Consensus pattern (30 bp):
ACCAGCAGAGGGGAAAAAAACATTTGGGGA
Found at i:60223497 original size:35 final size:35
Alignment explanation
Indices: 60223446--60223512 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
60223436 ATTATATAAG
60223446 TAAAATGAAATAGGTGAAAAAGATGAATCTAAAGT
1 TAAAATGAAATAGGTGAAAAAGATGAATCTAAAGT
60223481 TAAAATGAAA-ATGGTGAAAAAGATGAATCTAA
1 TAAAATGAAATA-GGTGAAAAAGATGAATCTAA
60223513 GGTTCATGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 1 0.03
35 30 0.97
ACGTcount: A:0.55, C:0.03, G:0.19, T:0.22
Consensus pattern (35 bp):
TAAAATGAAATAGGTGAAAAAGATGAATCTAAAGT
Found at i:60226223 original size:15 final size:15
Alignment explanation
Indices: 60226203--60226233 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60226193 GATACAATAG
60226203 TCAACCTTATCATTT
1 TCAACCTTATCATTT
*
60226218 TCAACCTTGTCATTT
1 TCAACCTTATCATTT
60226233 T
1 T
60226234 AAACTTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.03, T:0.48
Consensus pattern (15 bp):
TCAACCTTATCATTT
Found at i:60240596 original size:40 final size:40
Alignment explanation
Indices: 60240550--60240636 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
60240540 GTGTACCCTA
*
60240550 AACACGATCATGTGAATGTCGTTA-GTGTGGCCGTGTGTGG
1 AACACGATCATGTGAATGTCG-TAGGTGTGGCCGTGTGCGG
*
60240590 GACACGATCATGTGAATGTCGTAGGTGTGGCCGTGTGCGG
1 AACACGATCATGTGAATGTCGTAGGTGTGGCCGTGTGCGG
60240630 AACACGA
1 AACACGA
60240637 CCGTGTGGTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.05
40 41 0.95
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (40 bp):
AACACGATCATGTGAATGTCGTAGGTGTGGCCGTGTGCGG
Found at i:60241534 original size:13 final size:13
Alignment explanation
Indices: 60241518--60241543 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60241508 ACTTTACGCA
60241518 AACAAATGGTTTT
1 AACAAATGGTTTT
60241531 AACAAATGGTTTT
1 AACAAATGGTTTT
60241544 TGGAAACACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AACAAATGGTTTT
Found at i:60242796 original size:12 final size:11
Alignment explanation
Indices: 60242764--60242792 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
60242754 ATAATTTTAT
60242764 TTTTAAAATT-
1 TTTTAAAATTA
60242774 TTTTAAAATTA
1 TTTTAAAATTA
60242785 TTTTAAAA
1 TTTTAAAA
60242793 ATTAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATTA
Found at i:60242801 original size:22 final size:22
Alignment explanation
Indices: 60242760--60242801 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60242750 TTATATAATT
* **
60242760 TTATTTTTAAAATTTTTTAAAA
1 TTATTTTAAAAATTAATTAAAA
60242782 TTATTTTAAAAATTAATTAA
1 TTATTTTAAAAATTAATTAA
60242802 GTACTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATTTTAAAAATTAATTAAAA
Found at i:60248295 original size:35 final size:35
Alignment explanation
Indices: 60248251--60248326 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
60248241 GAGGTCAACA
* * *
60248251 TTTAGGGTTTGGGGTTTAAGGTTCCA-GATTCAAGG
1 TTTAGGGTTTAGGATTTAAGATT-CATGATTCAAGG
* *
60248286 TTTATGGTTTAGGATTTAAGATTCATGGTTCAAGG
1 TTTAGGGTTTAGGATTTAAGATTCATGATTCAAGG
60248321 TTTAGG
1 TTTAGG
60248327 ATTAAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 2 0.06
35 32 0.94
ACGTcount: A:0.22, C:0.07, G:0.30, T:0.41
Consensus pattern (35 bp):
TTTAGGGTTTAGGATTTAAGATTCATGATTCAAGG
Found at i:60248307 original size:28 final size:28
Alignment explanation
Indices: 60248276--60248329 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
60248266 TTAAGGTTCC
* *
60248276 AGATTCAAGGTTTATGGTTTAGGATTTA
1 AGATTCAAGGTTCAAGGTTTAGGATTTA
*
60248304 AGATTCATGGTTCAAGGTTTAGGATT
1 AGATTCAAGGTTCAAGGTTTAGGATT
60248330 AAAAAATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.41
Consensus pattern (28 bp):
AGATTCAAGGTTCAAGGTTTAGGATTTA
Found at i:60252712 original size:18 final size:19
Alignment explanation
Indices: 60252681--60252718 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
60252671 AGTATACATA
60252681 TTTAAAATTCATCTTCAATT
1 TTTAAAATTCATCTT-AATT
60252701 TTTAAAA-T-ATCTTAATT
1 TTTAAAATTCATCTTAATT
60252718 T
1 T
60252719 AGTCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 5 0.28
19 1 0.06
20 7 0.39
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAAAATTCATCTTAATT
Found at i:60258383 original size:34 final size:34
Alignment explanation
Indices: 60258332--60258451 Score: 125
Period size: 34 Copynumber: 3.5 Consensus size: 34
60258322 CTAATTCATG
* * *
60258332 ATAAGCATGA-CTTTTGCTACAGCATTGATTTGTT
1 ATAAGCAT-ATCTATTGCTACAGTATTGATATGTT
* *
60258366 ATAAGCATATCTATTGCTACCGTATTGATCTGTT
1 ATAAGCATATCTATTGCTACAGTATTGATATGTT
* * **
60258400 ATAAGCATGTCCATTGCTATTGTATTGATATGTT
1 ATAAGCATATCTATTGCTACAGTATTGATATGTT
*
60258434 ATAAGCATGTCATATTGC
1 ATAAGCATATC-TATTGC
60258452 ATTGCATGGG
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
33 1 0.01
34 68 0.92
35 5 0.07
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.41
Consensus pattern (34 bp):
ATAAGCATATCTATTGCTACAGTATTGATATGTT
Found at i:60267659 original size:6 final size:6
Alignment explanation
Indices: 60267648--60267673 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
60267638 TGATATTACT
60267648 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
60267674 TCATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:60267868 original size:17 final size:17
Alignment explanation
Indices: 60267833--60267910 Score: 54
Period size: 17 Copynumber: 4.7 Consensus size: 17
60267823 TTTTAATACT
** *
60267833 ATAAATATATATGTATA
1 ATAAATATATAAATTTA
60267850 ATAAATATATAAATTTA
1 ATAAATATATAAATTTA
* *
60267867 ATAATTAT-TAAAATCT-
1 ATAAATATAT-AAATTTA
*
60267883 ATAAA-ATTTAAATTTA
1 ATAAATATATAAATTTA
* *
60267899 ATGATTATATAA
1 ATAAATATATAA
60267911 TATATATAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
15 7 0.15
16 9 0.19
17 31 0.66
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (17 bp):
ATAAATATATAAATTTA
Found at i:60267914 original size:29 final size:30
Alignment explanation
Indices: 60267846--60267914 Score: 70
Period size: 32 Copynumber: 2.3 Consensus size: 30
60267836 AATATATATG
*
60267846 TATAATA-AATATATAAATTTAATAATTAT
1 TATAATATAAAATATAAATTTAATAATTAT
* * *
60267875 TAAAATCTATAAAATTTAAATTTAATGATTA-
1 TATAA--TATAAAATATAAATTTAATAATTAT
60267906 TATAATATA
1 TATAATATA
60267915 TATAATGGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
29 8 0.25
31 6 0.19
32 18 0.56
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (30 bp):
TATAATATAAAATATAAATTTAATAATTAT
Found at i:60268090 original size:37 final size:36
Alignment explanation
Indices: 60268031--60268104 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
60268021 TTTAATTCTA
* *
60268031 ATGATTTTGGAATTTAGGTTTTACTTTAAGTATTTTT
1 ATGATTTGGGAATTTAGATTTTACTTTAAGT-TTTTT
* * *
60268068 ATGATTTGGGAATTTATATTTTAGTTTTAGTTTTTT
1 ATGATTTGGGAATTTAGATTTTACTTTAAGTTTTTT
60268104 A
1 A
60268105 ATTATTAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
36 6 0.19
37 26 0.81
ACGTcount: A:0.24, C:0.01, G:0.16, T:0.58
Consensus pattern (36 bp):
ATGATTTGGGAATTTAGATTTTACTTTAAGTTTTTT
Found at i:60268140 original size:22 final size:22
Alignment explanation
Indices: 60268092--60268140 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
60268082 TATATTTTAG
*
60268092 TTTTAGTTTTTTAATTATTAAT
1 TTTTAATTTTTTAATTATTAAT
*
60268114 GTTTAATTTTTTAA-TATTAAAT
1 TTTTAATTTTTTAATTATT-AAT
60268136 TTTTA
1 TTTTA
60268141 TTAATATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TTTTAATTTTTTAATTATTAAT
Found at i:60268146 original size:17 final size:16
Alignment explanation
Indices: 60268106--60268149 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
60268096 AGTTTTTTAA
* *
60268106 TTATTAATGTTTAATT
1 TTATTAATATTAAATT
60268122 TT-TTAATATTAAATTT
1 TTATTAATATTAAA-TT
60268138 TTATTAATATTA
1 TTATTAATATTA
60268150 TTATCTGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 9 0.38
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTATTAATATTAAATT
Found at i:60270685 original size:23 final size:23
Alignment explanation
Indices: 60270659--60270702 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
60270649 ATATTTCATA
* *
60270659 AATAGATATAGATACAAATGCTT
1 AATAGATACAAATACAAATGCTT
60270682 AATAGATACAAATACAAATGC
1 AATAGATACAAATACAAATGC
60270703 ATAACAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (23 bp):
AATAGATACAAATACAAATGCTT
Found at i:60270713 original size:23 final size:23
Alignment explanation
Indices: 60270670--60270714 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
60270660 ATAGATATAG
* * *
60270670 ATACAAATGCTTAATAGATACAA
1 ATACAAATGCATAACAAATACAA
60270693 ATACAAATGCATAACAAATACA
1 ATACAAATGCATAACAAATACA
60270715 TAACAAACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.22
Consensus pattern (23 bp):
ATACAAATGCATAACAAATACAA
Found at i:60282318 original size:12 final size:13
Alignment explanation
Indices: 60282296--60282324 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
60282286 GATTCATTCT
60282296 ATAATTATAAAAA
1 ATAATTATAAAAA
60282309 ATAA-TATAAAAA
1 ATAATTATAAAAA
60282321 ATAA
1 ATAA
60282325 AAAATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
ATAATTATAAAAA
Found at i:60283908 original size:162 final size:161
Alignment explanation
Indices: 60283697--60284105 Score: 712
Period size: 161 Copynumber: 2.5 Consensus size: 161
60283687 AGGTCGCACG
* * *
60283697 AGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTATTTTTCCGTTTCT
1 AGTCAAATATTCAGCCATTTC-ATAAAACAAAAGCATTAATTTTGTATTTGATTTTT-CGTTTCT
*
60283762 TTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCAAGAAAATATCAATGT
64 TTTAGTCATTAAATTTGGATTAATTATTAAACCGCCATTGCTTAAATGCAAGAAAATATCAATGT
60283827 AATGTTTCAAAATGACATGAAAAGAAAGAGAAA
129 AATGTTTCAAAATGACATGAAAAGAAAGAGAAA
*
60283860 AGTCAAATATTCACCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
* *
60283925 TAGTCATTAAATTTGGAATAATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAA
66 TAGTCATTAAATTTGGATTAATTATTAAACCGCCATTGCTTAAATGCAAGAAAATATCAATGTAA
60283990 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
*
60284021 AGTCAAATATTCAGCCATTTCATATAACAAAAGCATTAATTTTGTATTTGATTTTTTC-TTTCTT
1 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGA-TTTTTCGTTTCTT
60284085 TTAGTCATTAAATTTGGATTA
65 TTAGTCATTAAATTTGGATTA
60284106 TTTTTTTGAT
Statistics
Matches: 235, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
161 177 0.75
162 39 0.17
163 19 0.08
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (161 bp):
AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
TAGTCATTAAATTTGGATTAATTATTAAACCGCCATTGCTTAAATGCAAGAAAATATCAATGTAA
TGTTTCAAAATGACATGAAAAGAAAGAGAAA
Found at i:60284915 original size:161 final size:161
Alignment explanation
Indices: 60284647--60285054 Score: 726
Period size: 161 Copynumber: 2.5 Consensus size: 161
60284637 AGGTTGCACG
* * *
60284647 AGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTATTTTTCGTTTCTT
1 AGTCAAATATTCAGCCATTTC-ATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTT
** *
60284712 TTAGTCATTAAATTTGGATTAACTATTAAACCGCTCTTGCTTAAATGCAAGGAAATATCAATGTA
65 TTAGTCATTAAATTTGGATTAACTATTAAACCGCAATTGCTTAAATGCAAGAAAATATCAATGTA
60284777 ATGTTTCAAAATGACATGAAAAGAAAGAGAAA
130 ATGTTTCAAAATGACATGAAAAGAAAGAGAAA
60284809 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
* *
60284874 TAGTCATTAAATTTGGATTAATTATTAAACCGCAATTGCTTAAATGCTAGAAAATATCAATGTAA
66 TAGTCATTAAATTTGGATTAACTATTAAACCGCAATTGCTTAAATGCAAGAAAATATCAATGTAA
60284939 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
*
60284970 AGTCAAATATTCAGCCATTCCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
60285035 TAGTCATTAAATTTGGATTA
66 TAGTCATTAAATTTGGATTA
60285055 TTTTTTCTGA
Statistics
Matches: 237, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
161 217 0.92
162 20 0.08
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.38
Consensus pattern (161 bp):
AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
TAGTCATTAAATTTGGATTAACTATTAAACCGCAATTGCTTAAATGCAAGAAAATATCAATGTAA
TGTTTCAAAATGACATGAAAAGAAAGAGAAA
Found at i:60285720 original size:938 final size:938
Alignment explanation
Indices: 60283163--60285992 Score: 5010
Period size: 938 Copynumber: 3.0 Consensus size: 938
60283153 AAAATTTTTG
* *
60283163 TTATTTTTTCTGATTCAAACCTTATCCCTATTGGGTGGGCTTATACTATATTATTTGTAAACTTA
1 TTATTTTTTCTGATTCAAACCTTATCCATATTGGGTGGGCTTATAGTATATTATTTGTAAACTTA
* *
60283228 TATCAAAATGAGTTTGTTGGTTCAAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAAT
66 TATCAAAATGAGTTTGCTGGTTCGAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAAT
* * * *
60283293 CCTCACACGAGCATGGATGTTAATTTTTGTCTTGAATGTTTAATAGAATTTCGGTAAAGCTGAAA
131 CCTCACGCGAGCATGGATGTTAATTTTTGTCTTGAATGTCTAATAGAGTTTCGGTAGAGCTGAAA
*
60283358 TTCTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAATTTTTATAGGATATGTTGTCATATTCTTTA
196 TTTTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAA--TTTATAGGATATGTTGTCATATTCTTTA
*
60283423 CCTTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTT-AAAATCCCTAAATTTGACATTTTCC
259 CCTTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCC
*
60283487 CTTCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATTCTGGACACGGCCATGTGAT
324 CTTCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATTTTGGACACGGCCATGTGAT
* * *
60283552 GGCGTGAGTGTGGCCGTGTGGGCCCACATGGGCATGTAGATTTTGGGCCAAGCCCTGTGGACCAC
389 GGCGTGAGTGTGGCCGTGTGGGCCCACATGGGCGTGTAGATTTTGGGCCAGGCCGTGTGGACCAC
* *
60283617 ACGAGCAAGGCCAATTTGGGCGTGTGGGCCCACACGGCCATGTGGGCCCATAATTTTAAAATTTT
454 ACGAGCAAGGCCAATTTCGGCGTTTGGGCCCACACGGCCATGTGGGCCCATAATTTTAAAATTTT
60283682 CCCTAAGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTT
519 CCCTAAGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTT
60283747 TATTTTTCCGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCA
584 TATTTTT-CGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCA
*
60283812 AGAAAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCACCCA
648 AGAAAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCAGCCA
60283877 TTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGA
713 TTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGA
*
60283942 ATAATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGTTTCAAAATGACATG
778 TTAATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGTTTCAAAATGACATG
*
60284007 AAAAGAAAGAGAAAAGTCAAATATTCAGCCATTTCATATAACAAAAGCATTAATTTTGTATTTGA
843 AAAAGAAAGAGAAAAGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGA
60284072 TTTTTTC-TTTCTTTTAGTCATTAAATTTGGA
908 -TTTTTCGTTTCTTTTAGTCATTAAATTTGGA
60284103 TTATTTTTT-TGATTCAAACCTTATCCCA-ATTGGGTGGGCTTATAG--TA-TA-TTGTAAACTT
1 TTATTTTTTCTGATTCAAACCTTAT-CCATATTGGGTGGGCTTATAGTATATTATTTGTAAACTT
* *
60284162 ATATCAAAATGAGTTTCCTGGTTCGAGTGGTAAGGAGTTAACTTGTTGGAGGTCTTGTGTTTAAA
65 ATATCAAAATGAGTTTGCTGGTTCGAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAA
* *
60284227 TCCTCACGCGAGCATGGATGTAAATTTTTGTCTTGAATGTCTAATAGAGTTTCAGTAGAGCTGAA
130 TCCTCACGCGAGCATGGATGTTAATTTTTGTCTTGAATGTCTAATAGAGTTTCGGTAGAGCTGAA
* *
60284292 ATTTTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAATTTATAAGATACGTTGTCATATTCTTTAC
195 ATTTTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAATTTATAGGATATGTTGTCATATTCTTTAC
*
60284357 CTTTTATTTTTATTCTTTTAACTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCCC
260 CTTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCCC
* *
60284422 TTCATGTCAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATCTCTTGCCTTTTGAATTCTGG
325 TTCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAA------------T---TT-TGG
* * * *
60284487 ACACGGCCATGTGACGACGTGAGCGTGGCCGTGTGGGCCCACATTGGCGTGTAGATTTTGGGCCA
374 ACACGGCCATGTGATGGCGTGAGTGTGGCCGTGTGGGCCCACATGGGCGTGTAGATTTTGGGCCA
60284552 GGCCGTGTGGACCACACGAGCAAGGCCAATTTCGGCGTTTGGGCCCACACGGCCATGTGGGCCCA
439 GGCCGTGTGGACCACACGAGCAAGGCCAATTTCGGCGTTTGGGCCCACACGGCCATGTGGGCCCA
*
60284617 TAATTTTAAAATTTTCCCTAAGGTTGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGC
504 TAATTTTAAAATTTTCCCTAAGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGC
* *
60284682 ATTAATTTTGTATTTTATTTTTCGTTTCTTTTAGTCATTAAATTTGGATTAACTATTAAACCGCT
569 ATTAATTTTGTATTTTATTTTTCGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCC
*
60284747 CTTGCTTAAATGCAAGGAAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGT
634 CTTGCTTAAATGCAAGAAAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGT
60284812 CAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAG
699 CAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAG
*
60284877 TCATTAAATTTGGATTAATTATTAAACCGCAATTGCTTAAATGCTAGAAAATATCAATGTAATGT
764 TCATTAAATTTGGATTAATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGT
*
60284942 TTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCAGCCATTCCATAAAACAAAAGCATT
829 TTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCAGCCATTTCATAAAACAAAAGCATT
60285007 AATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGA
894 AATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGA
60285052 TTATTTTTTCTGATTCAAACCTTATCCATATTGGGTGGGCTTATAGTATATTATTTGTAAACTTA
1 TTATTTTTTCTGATTCAAACCTTATCCATATTGGGTGGGCTTATAGTATATTATTTGTAAACTTA
*
60285117 TATCAAAATGATTTTGCTGGTTCGAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAAT
66 TATCAAAATGAGTTTGCTGGTTCGAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAAT
*
60285182 CCTCATGCGAGCATGGATGTTAATTTTTGTCTTGAATGTCTAATAGAGTTTCGGTAGAGCTGAAA
131 CCTCACGCGAGCATGGATGTTAATTTTTGTCTTGAATGTCTAATAGAGTTTCGGTAGAGCTGAAA
*
60285247 TTTTGAATTTTTAGAAGGTTAGAGGGGAGAGGAAATTTATAGGATATGTTGTCATATTCTTTACC
196 TTTTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAATTTATAGGATATGTTGTCATATTCTTTACC
60285312 TTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCCCT
261 TTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCCCT
60285377 TCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATTTTGGACACGGCCATGTGATGG
326 TCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATTTTGGACACGGCCATGTGATGG
60285442 CGTGAGTGTGGCCGTGTGGGCCCACATGGGCGTGTAGATTTTGGGCCAGGCCGTGTGGACCACAC
391 CGTGAGTGTGGCCGTGTGGGCCCACATGGGCGTGTAGATTTTGGGCCAGGCCGTGTGGACCACAC
*
60285507 GAGCAAGGCCAATTTCGGCATTTGGGCCCACACGGCCATGTGGGCCCATAATTTTAAAATTTTCC
456 GAGCAAGGCCAATTTCGGCGTTTGGGCCCACACGGCCATGTGGGCCCATAATTTTAAAATTTTCC
*
60285572 CTAGGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTA
521 CTAAGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTA
60285637 TTTTTCGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCAAGA
586 TTTTTCGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCAAGA
* *
60285702 AAATATCAATGTAATGTTTAAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTTAGCCATTT
651 AAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCAGCCATTT
60285767 CATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGATTA
716 CATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGATTA
60285832 ATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGTTTCAAAATGACATGAAA
781 ATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGTTTCAAAATGACATGAAA
60285897 AGAAAGAGAAAAGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTT
846 AGAAAGAGAAAAGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTT
60285962 TTCGTTTCTTTTAGTCATTAAATTTGGA
911 TTCGTTTCTTTTAGTCATTAAATTTGGA
60285990 TTA
1 TTA
60285993 ATTATTAAAC
Statistics
Matches: 1801, Mismatches: 64, Indels: 52
0.94 0.03 0.03
Matches are distributed among these distances:
933 64 0.04
934 66 0.04
935 165 0.09
936 2 0.00
937 2 0.00
938 557 0.31
939 33 0.02
940 11 0.01
942 1 0.00
946 1 0.00
948 6 0.00
949 346 0.19
950 242 0.13
952 2 0.00
953 2 0.00
954 301 0.17
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (938 bp):
TTATTTTTTCTGATTCAAACCTTATCCATATTGGGTGGGCTTATAGTATATTATTTGTAAACTTA
TATCAAAATGAGTTTGCTGGTTCGAGTGGTAAGGAGTTAGCTTGTTGGAGGTCTTGTGTTTAAAT
CCTCACGCGAGCATGGATGTTAATTTTTGTCTTGAATGTCTAATAGAGTTTCGGTAGAGCTGAAA
TTTTGAATTGTTAGAAGGTTAGAGGGGAGAGGAAATTTATAGGATATGTTGTCATATTCTTTACC
TTTTATTTTTATTCTTTTATCTTTTTCTCTCACCTTTAAAAATCCCTAAATTTGACGTTTTCCCT
TCATATTAATTGGCACAATCCCTTTTTCCCTTGCCTTTTGAATTTTGGACACGGCCATGTGATGG
CGTGAGTGTGGCCGTGTGGGCCCACATGGGCGTGTAGATTTTGGGCCAGGCCGTGTGGACCACAC
GAGCAAGGCCAATTTCGGCGTTTGGGCCCACACGGCCATGTGGGCCCATAATTTTAAAATTTTCC
CTAAGGTCGCACGAGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTA
TTTTTCGTTTCTTTTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCAAGA
AAATATCAATGTAATGTTTCAAAATGACATGAAAAGAAAGAGAAAAGTCAAATATTCAGCCATTT
CATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTTTAGTCATTAAATTTGGATTA
ATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAATGTTTCAAAATGACATGAAA
AGAAAGAGAAAAGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTT
TTCGTTTCTTTTAGTCATTAAATTTGGA
Found at i:60286352 original size:162 final size:161
Alignment explanation
Indices: 60285585--60286634 Score: 1641
Period size: 161 Copynumber: 6.6 Consensus size: 161
60285575 GGGTCGCACG
* *
60285585 AGTCAAATATTCAGTCATTTCAAAAAAACAAAAGCATTAATTTTGTATTTTATTTTTCGTTTCTT
1 AGTCAAATATTCAGCCATTTC-AAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTT
*
60285650 TTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCAAGAAAATATCAATGTA
65 TTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTA
*
60285715 ATGTTTAAAAATGACATGAAAAGAAAGAGAAA
130 ATGTTTCAAAATGACATGAAAAGAAAGAGAAA
* *
60285747 AGTCAAATATTTAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
*
60285812 TAGTCATTAAATTTGGATTAATTATTAAACCGCCATTGCTTAAATGCTAGAAAATATCAATGTAA
66 TAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTAA
60285877 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
*
60285908 AGTCAAATATTCAGCCATTTCATAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
**
60285973 TAGTCATTAAATTTGGATTAATTATTAAACCGCTATTGCTTAAATGCTAGAAAATATCAATGTAA
66 TAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTAA
*
60286038 TGTTTCAAAATAACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
* *** *
60286069 AGTCATATATTCAGCCATTTCAAAAATTGAAAGCATTAATTTTGTATTTGATTTTTCATTTCTTT
1 AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
* * *
60286134 TAGTCATTAAATTTGGACTAATTATTAAACCGCCCTTGCTTAAATGCTGGAAAATATGAATGTAA
66 TAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTAA
60286199 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
* * *
60286230 AGTCAAACATTCAGCAATTTCAAAAAACAAAAGCATTAATTTTTGTGTTTGATTTTTCGTTTCTT
1 AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAA-TTTTGTATTTGATTTTTCGTTTCTT
60286295 TTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTA
65 TTAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTA
60286360 ATGTTTCAAAATGACATGAAAAGAAAGAGAAA
130 ATGTTTCAAAATGACATGAAAAGAAAGAGAAA
* * *
60286392 AGTCAAATATTCTGTCATTT---AAAA-AAAA-CATTAATTTTGTATTTGATTTTCCGTTTCTTT
1 AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
* * * * *
60286452 TAGTCATTAAATTTAGATTAAGTATTAAATCTCCCTTGTTTAAATGCTAGAAAATATCAATGTAA
66 TAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTAA
*
60286517 TG-TTAAAAATGACATGAAAAGAAAGAGAAA
131 TGTTTCAAAATGACATGAAAAGAAAGAGAAA
* * * ** * *
60286547 AGTCAAATA-TCAACCATTTCAAAAAATATATA-TTTTACTTTTGTATTTGATTTTT-GTTTCTC
1 AGTCAAATATTCAGCCATTTCAAAAAACA-AAAGCATTAATTTTGTATTTGATTTTTCGTTTCTT
* * *
60286609 TTAGACATTAAATTTGCATTGATTAT
65 TTAGTCATTAAATTTGGATTAATTAT
60286635 CAAATCACCT
Statistics
Matches: 823, Mismatches: 59, Indels: 16
0.92 0.07 0.02
Matches are distributed among these distances:
154 7 0.01
155 36 0.04
156 86 0.10
157 10 0.01
158 32 0.04
159 25 0.03
161 475 0.58
162 152 0.18
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (161 bp):
AGTCAAATATTCAGCCATTTCAAAAAACAAAAGCATTAATTTTGTATTTGATTTTTCGTTTCTTT
TAGTCATTAAATTTGGATTAATTATTAAACCGCCCTTGCTTAAATGCTAGAAAATATCAATGTAA
TGTTTCAAAATGACATGAAAAGAAAGAGAAA
Found at i:60295309 original size:22 final size:22
Alignment explanation
Indices: 60295259--60295309 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
60295249 CGTAGGACAC
*
60295259 GACCATGTGATGGTGTGAGTGT
1 GACCGTGTGATGGTGTGAGTGT
* *
60295281 GATCGTGTGATGGTGTGGGTGT
1 GACCGTGTGATGGTGTGAGTGT
*
60295303 GGCCGTG
1 GACCGTG
60295310 AGGGCCCACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.12, C:0.10, G:0.47, T:0.31
Consensus pattern (22 bp):
GACCGTGTGATGGTGTGAGTGT
Found at i:60297438 original size:19 final size:19
Alignment explanation
Indices: 60297414--60297452 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60297404 TATTTTGATG
60297414 ACGGCTTGAGGGATAGTCT
1 ACGGCTTGAGGGATAGTCT
60297433 ACGGCTTGAGGGATAGTCT
1 ACGGCTTGAGGGATAGTCT
60297452 A
1 A
60297453 AGGGTATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (19 bp):
ACGGCTTGAGGGATAGTCT
Found at i:60303605 original size:3 final size:3
Alignment explanation
Indices: 60303586--60303625 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
60303576 AAAATAAATA
* *
60303586 AAT AAT AAC AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
60303626 GCGACAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:60305183 original size:6 final size:6
Alignment explanation
Indices: 60305172--60305202 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
60305162 GACTTGTTAA
60305172 TTATTT TTATTT TTATTT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT T
60305203 GTTTGTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTATTT
Found at i:60318276 original size:57 final size:57
Alignment explanation
Indices: 60318186--60318298 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
60318176 CCTTTATGAG
** *
60318186 TGACATACCATTATGACCCAATGTGATTGGATGGAAGGACTCTTGCAGTCCTAATTA
1 TGACATACCACCATGACCCAATGTGATTAGATGGAAGGACTCTTGCAGTCCTAATTA
* *
60318243 TGACATACCACCATGACCCGATGTGATTAGATGGAAGGACTCTTGTAGTCCTAATT
1 TGACATACCACCATGACCCAATGTGATTAGATGGAAGGACTCTTGCAGTCCTAATT
60318299 GGTGTGGTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (57 bp):
TGACATACCACCATGACCCAATGTGATTAGATGGAAGGACTCTTGCAGTCCTAATTA
Found at i:60319048 original size:32 final size:32
Alignment explanation
Indices: 60319001--60319066 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
60318991 AATTTCTGAA
* *
60319001 AGTTTCCATTGTTTTATAAGTAAATGTTTAAG
1 AGTTTCCACTATTTTATAAGTAAATGTTTAAG
*
60319033 AGTTTCCACTATTTTATAAGTCAATGTTTAAG
1 AGTTTCCACTATTTTATAAGTAAATGTTTAAG
60319065 AG
1 AG
60319067 ATTGTGTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (32 bp):
AGTTTCCACTATTTTATAAGTAAATGTTTAAG
Found at i:60322192 original size:52 final size:52
Alignment explanation
Indices: 60322114--60322220 Score: 205
Period size: 52 Copynumber: 2.1 Consensus size: 52
60322104 TCTTTTCTCT
*
60322114 TTAAAGTCTATTTTTTTGCTCGGCTACTCTAGTTGAGGAAAGTATGGTGGTG
1 TTAAAGTCTATTTTTTTGCTCGGCTACTCTAGTTGAGGAAAGTACGGTGGTG
60322166 TTAAAGTCTATTTTTTTGCTCGGCTACTCTAGTTGAGGAAAGTACGGTGGTG
1 TTAAAGTCTATTTTTTTGCTCGGCTACTCTAGTTGAGGAAAGTACGGTGGTG
60322218 TTA
1 TTA
60322221 CTTCATGAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.40
Consensus pattern (52 bp):
TTAAAGTCTATTTTTTTGCTCGGCTACTCTAGTTGAGGAAAGTACGGTGGTG
Found at i:60323944 original size:86 final size:87
Alignment explanation
Indices: 60323632--60323946 Score: 271
Period size: 90 Copynumber: 3.6 Consensus size: 87
60323622 AGAAAATCTT
* * *
60323632 ATTAAACGGCGAGAATAAATCTTAAAACAGATTTTATTTAA-TTTAATTTAATTCTAATTTGGAA
1 ATTAAACGGCGAGAATAAATCTCAAAACAGATTTTATTTAACTTTAA-TT-ACTC-ATTTTGGAA
* * * *
60323696 ACAAAATTAAAATTGAATAAAATATT
63 ATAAAATAAAAATAGAATAAAAT-TC
* * * * * * * * **
60323722 TTTAATCAGCGGGAATAAATCTCGAAATAGATTTTATTTAATTTTAATTTCTTGTTTTTGGAAAT
1 ATTAAACGGCGAGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTAC-TCATTTTGGAAAT
*
60323787 AAAATTAAAAAAAAGAATAAAATTC
65 AAAA-T-AAAAATAGAATAAAATTC
* * * *
60323812 ATTGAACGGC-AGGAATAAATCTCAAAATAGATTTTATTT-TCATTTAAATACTCATTTTGGAAA
1 ATTAAACGGCGA-GAATAAATCTCAAAACAGATTTTATTTAAC-TTTAATTACTCATTTTGGAAA
* *
60323875 TAAAATCAAAATGGAATAAAATTC
64 TAAAATAAAAATAGAATAAAATTC
* *
60323899 GTTAAACGGC-AGAATAAAT-TCCGAAACAGATTTTATTTAACTTTAATT
1 ATTAAACGGCGAGAATAAATCT-CAAAACAGATTTTATTTAACTTTAATT
60323947 TAGAAACAAA
Statistics
Matches: 179, Mismatches: 38, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
85 1 0.01
86 29 0.16
87 25 0.14
88 1 0.01
89 27 0.15
90 78 0.44
91 18 0.10
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (87 bp):
ATTAAACGGCGAGAATAAATCTCAAAACAGATTTTATTTAACTTTAATTACTCATTTTGGAAATA
AAATAAAAATAGAATAAAATTC
Found at i:60328933 original size:18 final size:19
Alignment explanation
Indices: 60328902--60328938 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
60328892 TCTATACAGA
60328902 TTTAAAATTCATCTTCAATT
1 TTTAAAATTCATCTT-AATT
60328922 TTTAAAA-T-ATCTTAATT
1 TTTAAAATTCATCTTAATT
60328939 CAGTCCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.24
18 5 0.29
19 1 0.06
20 7 0.41
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTAAAATTCATCTTAATT
Found at i:60330344 original size:17 final size:18
Alignment explanation
Indices: 60330319--60330355 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
60330309 TTTAAAAAAG
60330319 TTTAGGATTT-AGATTATT
1 TTTAGGATTTGAG-TTATT
60330337 TTTA-GATTTGAGTTATT
1 TTTAGGATTTGAGTTATT
60330354 TT
1 TT
60330356 GGCTCATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59
Consensus pattern (18 bp):
TTTAGGATTTGAGTTATT
Found at i:60331656 original size:22 final size:23
Alignment explanation
Indices: 60331631--60331717 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
60331621 AATTTTAAAA
*
60331631 TTTTAAAATTTTTTTTAAAATTT
1 TTTTAAAATTTTTTTTAAAACTT
60331654 TTTTAAAA-TTTTTTTAAAA-TT
1 TTTTAAAATTTTTTTTAAAACTT
*
60331675 TTTTCAAAATTTTTTTAAAATACTT
1 TTTT-AAAATTTTTTTTAAA-ACTT
**
60331700 TTTTTTAATTTTTTTTAA
1 TTTTAAAATTTTTTTTAA
60331718 TTTTAATATA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.11
22 15 0.27
23 17 0.30
24 12 0.21
25 6 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTAAAATTTTTTTTAAAACTT
Found at i:60331715 original size:11 final size:11
Alignment explanation
Indices: 60331631--60331714 Score: 114
Period size: 11 Copynumber: 7.4 Consensus size: 11
60331621 AATTTTAAAA
60331631 TTTTAAAATTTT
1 TTTTAAAA-TTT
60331643 TTTTAAAATTT
1 TTTTAAAATTT
60331654 TTTTAAAATTT
1 TTTTAAAATTT
60331665 TTTTAAAATTT
1 TTTTAAAATTT
*
60331676 TTTCAAAATTT
1 TTTTAAAATTT
60331687 TTTTAAAATACTT
1 TTTTAAAAT--TT
**
60331700 TTTTTTAATTT
1 TTTTAAAATTT
60331711 TTTT
1 TTTT
60331715 TAATTTTAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
11 49 0.74
12 8 0.12
13 9 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:60331721 original size:17 final size:17
Alignment explanation
Indices: 60331702--60331734 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60331692 AAATACTTTT
*
60331702 TTTTAAT-TTTTTTTAA
1 TTTTAATATATTTTTAA
60331718 TTTTAATATATTTTTAA
1 TTTTAATATATTTTTAA
60331735 AATACTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTAATATATTTTTAA
Found at i:60334241 original size:20 final size:20
Alignment explanation
Indices: 60334218--60334261 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
60334208 TATATATATG
60334218 TTTACGAATTGAAATATGCA
1 TTTACGAATTGAAATATGCA
60334238 TTTACGAATTGAAATATGCA
1 TTTACGAATTGAAATATGCA
60334258 TTTA
1 TTTA
60334262 TATTGTCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (20 bp):
TTTACGAATTGAAATATGCA
Found at i:60335467 original size:27 final size:26
Alignment explanation
Indices: 60335435--60335497 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 26
60335425 ATATAGATAG
60335435 ATTATAAAATATGGACAATGTATA-A-AT
1 ATTATAAAATAT--A-AATGTATATACAT
60335462 ATTATAAAATATAAATGTATATACAT
1 ATTATAAAATATAAATGTATATACAT
60335488 ATATATAAAA
1 AT-TATAAAA
60335498 ACTATGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 8 0.24
25 2 0.06
26 4 0.12
27 19 0.58
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (26 bp):
ATTATAAAATATAAATGTATATACAT
Found at i:60335619 original size:3 final size:3
Alignment explanation
Indices: 60335611--60335658 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
60335601 ATATGTAAGT
* *
60335611 ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ACA A-A ATTA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
60335655 ATA A
1 ATA A
60335659 ACTAAAAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:60336508 original size:17 final size:17
Alignment explanation
Indices: 60336486--60336542 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
60336476 ACGTGCGCGT
60336486 GTGGGGGTTGCTGCGAC
1 GTGGGGGTTGCTGCGAC
* *
60336503 GTGGGGCG-TGC-ACGGC
1 GTGGGG-GTTGCTGCGAC
*
60336519 GCTGGAGGTTGCTGCGAC
1 G-TGGGGGTTGCTGCGAC
60336537 GTGGGG
1 GTGGGG
60336543 TGGCTGCTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 5 0.17
17 20 0.67
18 5 0.17
ACGTcount: A:0.07, C:0.19, G:0.54, T:0.19
Consensus pattern (17 bp):
GTGGGGGTTGCTGCGAC
Found at i:60336683 original size:40 final size:40
Alignment explanation
Indices: 60336636--60336761 Score: 234
Period size: 40 Copynumber: 3.1 Consensus size: 40
60336626 GTAATTGGGT
60336636 CAGATTAGTTAATTTGGGCCCGGGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGGCCCGGGCAACAATTGGGTATTA
60336676 CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGG-CCCGGGCAACAATTGGGTATTA
*
60336717 CAGATTAGTTAATTTGGGCCCCGGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGGCCCGGGCAACAATTGGGTATTA
60336757 CAGAT
1 CAGAT
60336762 ATTTTTATAA
Statistics
Matches: 84, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
40 44 0.52
41 40 0.48
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (40 bp):
CAGATTAGTTAATTTGGGCCCGGGCAACAATTGGGTATTA
Found at i:60336711 original size:41 final size:41
Alignment explanation
Indices: 60336636--60336761 Score: 238
Period size: 41 Copynumber: 3.1 Consensus size: 41
60336626 GTAATTGGGT
60336636 CAGATTAGTTAATTTGGG-CCCGGGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
60336676 CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
60336717 CAGATTAGTTAATTTGGGCCCC-GGCAACAATTGGGTATTA
1 CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
60336757 CAGAT
1 CAGAT
60336762 ATTTTTATAA
Statistics
Matches: 85, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
40 41 0.48
41 44 0.52
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (41 bp):
CAGATTAGTTAATTTGGGCCCCGGGCAACAATTGGGTATTA
Found at i:60336990 original size:22 final size:21
Alignment explanation
Indices: 60336962--60337008 Score: 76
Period size: 22 Copynumber: 2.2 Consensus size: 21
60336952 GTAAATTATG
*
60336962 AAAATATGTATATGTATGTATT
1 AAAATATGTATATATATGTA-T
60336984 AAAATATGTATATATATGTAT
1 AAAATATGTATATATATGTAT
60337005 AAAA
1 AAAA
60337009 GAAATGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (21 bp):
AAAATATGTATATATATGTAT
Found at i:60338994 original size:60 final size:60
Alignment explanation
Indices: 60338896--60339016 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
60338886 CCAACTCCCG
* * * *
60338896 TGCCTGTTTTCTCTAATTTTGTAGACCAAAATTATTATTTTAATAAATCAAAATGTTTTA
1 TGCCCGTTTTCTCGAATTTTGTAGACCAAAATAATTATTTTAATAAATCAAAATATTTTA
60338956 TGCCCGTTTTCTCGAATTTTGTAGACCAAAATAATTATTTTAATAAATCAAAATATTTTA
1 TGCCCGTTTTCTCGAATTTTGTAGACCAAAATAATTATTTTAATAAATCAAAATATTTTA
60339016 T
1 T
60339017 TAAAATGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (60 bp):
TGCCCGTTTTCTCGAATTTTGTAGACCAAAATAATTATTTTAATAAATCAAAATATTTTA
Found at i:60342580 original size:27 final size:27
Alignment explanation
Indices: 60342518--60342581 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 27
60342508 CTATAAACTT
*
60342518 TACTCTCTCTTTTTCTCTTTATTTTCCA
1 TACTCT-TCTGTTTCTCTTTATTTTCCA
*
60342546 TTCTCTTCTGTTTCTCATTCTATTTTCC-
1 TACTCTTCTGTTTCTC-TT-TATTTTCCA
60342574 TAC-CTTCT
1 TACTCTTCT
60342582 CCAAGTCTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 14 0.45
28 9 0.29
29 8 0.26
ACGTcount: A:0.09, C:0.30, G:0.02, T:0.59
Consensus pattern (27 bp):
TACTCTTCTGTTTCTCTTTATTTTCCA
Found at i:60342790 original size:23 final size:23
Alignment explanation
Indices: 60342762--60342810 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
60342752 AGGTGGAAGC
*
60342762 AAAAGAAAATGAAAA-AAAAAGTT
1 AAAAGAAAAT-AAAATAAAAAATT
*
60342785 AAAAGAACATAAAATAAAAAATT
1 AAAAGAAAATAAAATAAAAAATT
60342808 AAA
1 AAA
60342811 TTACTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (23 bp):
AAAAGAAAATAAAATAAAAAATT
Found at i:60343281 original size:18 final size:18
Alignment explanation
Indices: 60343255--60343289 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60343245 TTTATTTACG
*
60343255 AAAATAATACAAAAAAAC
1 AAAAAAATACAAAAAAAC
*
60343273 AAAAAAATAGAAAAAAA
1 AAAAAAATACAAAAAAA
60343290 AAAGGTTGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.09
Consensus pattern (18 bp):
AAAAAAATACAAAAAAAC
Found at i:60343462 original size:10 final size:10
Alignment explanation
Indices: 60343447--60343483 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
60343437 CGTGGCTCCG
60343447 GAAAAAGAGA
1 GAAAAAGAGA
60343457 GAAAAAGAGA
1 GAAAAAGAGA
*
60343467 GAAAGAGAAGA
1 GAAAAAG-AGA
60343478 GAAAAA
1 GAAAAA
60343484 AAAGGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (10 bp):
GAAAAAGAGA
Found at i:60343653 original size:40 final size:41
Alignment explanation
Indices: 60343607--60343714 Score: 105
Period size: 40 Copynumber: 2.6 Consensus size: 41
60343597 TTTTAGTTAG
* *
60343607 TATTATTATTATGGTTAGTTATTATTTTTAGTA-AAACCCTA
1 TATTATTATTATGGTTAGTTATTATTTTGAGTATAAA-ACTA
* *
60343648 -ATTATTATTGTTAGTTAG-TATTATTTTGAGTATAAAACTA
1 TATTATTATT-ATGGTTAGTTATTATTTTGAGTATAAAACTA
*
60343688 TTATTATTGTTATTGTGTTAGTTATTA
1 -TATTATTATTA-TG-GTTAGTTATTA
60343715 GGGTTAGTGG
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
40 25 0.47
41 9 0.17
42 9 0.17
43 5 0.09
44 5 0.09
ACGTcount: A:0.31, C:0.04, G:0.12, T:0.54
Consensus pattern (41 bp):
TATTATTATTATGGTTAGTTATTATTTTGAGTATAAAACTA
Found at i:60349233 original size:158 final size:153
Alignment explanation
Indices: 60348842--60349238 Score: 378
Period size: 158 Copynumber: 2.5 Consensus size: 153
60348832 GCAAGTTGAA
*
60348842 AAAAAAGTTAGTAAAACACTCTTACTTCAGCCATTTGTTCGTA-TTTTTTCTTCTGCATTTTATT
1 AAAAAAGTTAGTAAAACACTCTTACTTCAGCCATTTGTTCGTATTTTTTTC-TCCGCATTTTATT
*
60348906 ACTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATGATATTTGAA
65 ACTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTACATGATATTTGAA
* *
60348971 ATTTATTAATTTAGTGTGTTTTTT
130 ATTTATTAATTTAGTCTGATTTTT
* * * * * **
60348995 AAATTAATTTAGTGTAAAAAAAAC-CTTA-TTCCTA-CCATTTACTT-GTATTATTTTC-CCAAA
1 AAA-AAAGTTA--GT--AAAACACTCTTACTT-C-AGCCATTT-GTTCGTATTTTTTTCTCCGCA
* * * * *
60349055 TTTTATTACTTTCAATAAAATAT-ATTATTTTTGTATTTTATTATTTTATATTATTTCAGTACAT
58 TTTTATTACTTT-AA-AAAATATCATAATTTCT-AATTTTATAATTTTACATTATTTCAGTACAT
** * *
60349119 TTTGTTTGAAATATTTGTATTAA-TTATTTCTGAATTTTT
120 GATATTTG-AA-A-TT-TATTAATTTA-GTCTG-ATTTTT
* *
60349158 AAAAAAGTTAGTAAAACACTCTTACTTCGGCCGTTTGTTCGTATTTTTTTCTCCGCATTTTATTA
1 AAAAAAGTTAGTAAAACACTCTTACTTCAGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTA
60349223 CTTTAAAAAATATCAT
66 CTTTAAAAAATATCAT
60349239 TGTTGACACC
Statistics
Matches: 191, Mismatches: 29, Indels: 42
0.73 0.11 0.16
Matches are distributed among these distances:
153 3 0.02
154 5 0.03
156 18 0.09
157 23 0.12
158 69 0.36
159 26 0.14
160 20 0.10
161 5 0.03
162 14 0.07
163 8 0.04
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.49
Consensus pattern (153 bp):
AAAAAAGTTAGTAAAACACTCTTACTTCAGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTA
CTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTACATGATATTTGAAA
TTTATTAATTTAGTCTGATTTTT
Found at i:60350770 original size:23 final size:25
Alignment explanation
Indices: 60350744--60350790 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
60350734 TATACGTGTA
60350744 CATAATAAAAATA-T-ATACTAATG
1 CATAATAAAAATAGTAATACTAATG
*
60350767 CATAATAATAATAGTAATACTAAT
1 CATAATAAAAATAGTAATACTAAT
60350791 AATACTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
24 1 0.05
25 8 0.38
ACGTcount: A:0.55, C:0.09, G:0.04, T:0.32
Consensus pattern (25 bp):
CATAATAAAAATAGTAATACTAATG
Found at i:60350793 original size:9 final size:9
Alignment explanation
Indices: 60350769--60350803 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
60350759 TACTAATGCA
*
60350769 TAATAATAA
1 TAATAATAC
*
60350778 TAGTAATAC
1 TAATAATAC
60350787 TAATAATAC
1 TAATAATAC
60350796 TAATAATA
1 TAATAATA
60350804 TAAAAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (9 bp):
TAATAATAC
Found at i:60351821 original size:22 final size:22
Alignment explanation
Indices: 60351769--60351821 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
60351759 GGTGTCAGAC
*
60351769 GGTATGGGACTGTTGTAGTGCA
1 GGTATGGGGCTGTTGTAGTGCA
**
60351791 GGTATGGGGCTGTTGTAGTGGG
1 GGTATGGGGCTGTTGTAGTGCA
60351813 GGTATGGGG
1 GGTATGGGG
60351822 TTGCTTCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.13, C:0.06, G:0.51, T:0.30
Consensus pattern (22 bp):
GGTATGGGGCTGTTGTAGTGCA
Found at i:60353129 original size:16 final size:15
Alignment explanation
Indices: 60353108--60353137 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
60353098 AATAAAAATA
60353108 TATTATTTTCATATTT
1 TATTATTTT-ATATTT
60353124 TATTATTTTATATT
1 TATTATTTTATATT
60353138 ATTTCAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:60353264 original size:631 final size:635
Alignment explanation
Indices: 60351999--60353622 Score: 2836
Period size: 631 Copynumber: 2.6 Consensus size: 635
60351989 GCCTACTACA
* *
60351999 ATCATAATTTCCAATTTTATAATTTTACATTATTTTAGTGCATGATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
* *
60352064 AGTATG-TTTTTAAATTAATTTAGTGTAAAAAAAATCATTATTCCTACCATTTGCTTGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCATTATTCCTACCATTTGCTTGTATTATT
*
60352128 TTCCCGAATTTTATTACGTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
*
60352193 CAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATATTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
60352258 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTC-TCTGCATTTTATTACTTTAAAAAATATCATA
261 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTTC-GCATTTTATTACTTTAAAAAATATCATA
*
60352322 ATTTCTAATTTTATAATTTTACATTACTTCAGTGCATTATGTTTGAAATTTATTAATTTAGTGTG
325 ATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTTAGTGTG
60352387 TTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTCGTATTATTTTCCCG
390 TTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTCGTATTATTTTCCCG
*
60352452 AATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTTCAGTAT
455 AATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTTCAGTAC
*
60352517 ATTTTGTTTGAAATGTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACACTCTTAC
520 ATTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACACTCTTAC
* *
60352582 TTCGGCCATTTGTTTGTATTTTTTTCTCCGTATTTTATTACTTTAAAAAAT
585 TTCGGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAAAAAT
*
60352633 ATCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
*
60352698 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAA-CTTTATTCCTACCATTTGCTTGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCATTATTCCTACCATTTGCTTGTATTATT
* *
60352762 TTCCCAAATTTTATTAATTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
* *
60352827 CAGTACATTTTTTTTGAAATATTTTTATTAATTATTTCTGAA-TTTTAAAAAATTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATATTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
60352891 CTCTTACTTC-GCCATTTGTTCGTATTTTTTTCTTCGCATTTTATTACTTT-AAAAATATCATAA
261 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTTCGCATTTTATTACTTTAAAAAATATCATAA
*
60352954 TTTCTAATTTTATAATTTTATATTATTTCAGTGCATTATGTTTGAAATTTATTAATTTAGTGTGT
326 TTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTTAGTGTGT
* *
60353019 TTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATTTTCCCGA
391 TTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTCGTATTATTTTCCCGA
*
60353084 ATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTTCAGTACA
456 ATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTTCAGTACA
60353149 TTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACACTCTTAC
521 TTTTGTTTGAAATATTT-TATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACACTCTTAC
*
60353214 TTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTT-AAAAAT
585 TTCGGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAAAAAT
* *
60353264 ATCATAATTTCTAATTTTATAATTTTACATTACTTCAGTGCATTATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
* * * *
60353329 AGTGTATTTTTT-AATTAATTTAGTGTAAAAAAAACCCTTATTCCTGCCATTTGCTCGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCATTATTCCTACCATTTGCTTGTATTATT
* *
60353393 TTCCCGAATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
60353458 CAGTACATTTTGTTTGAAATA-TTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATATTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
* * * *
60353522 CTCTTACTTCGGTCATTTGTTCGTATTTTTTTCTCCACATTTTATTATTTTAAAAAATATCATAA
261 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTTCGCATTTTATTACTTTAAAAAATATCATAA
**
60353587 -TTAAAATTTTATAATTTTACATTATTTCAGTGCATT
326 TTTCTAATTTTATAATTTTACATTATTTCAGTGCATT
60353623 TTATTAAATA
Statistics
Matches: 942, Mismatches: 41, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
630 42 0.04
631 435 0.46
632 194 0.21
633 46 0.05
634 197 0.21
635 28 0.03
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (635 bp):
ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCATTATTCCTACCATTTGCTTGTATTATT
TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
CAGTACATTTTGTTTGAAATATTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTTCGCATTTTATTACTTTAAAAAATATCATAA
TTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTTAGTGTGT
TTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTCGTATTATTTTCCCGA
ATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTTCAGTACA
TTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACACTCTTACT
TCGGCCATTTGTTCGTATTTTTTTCTCCGCATTTTATTACTTTAAAAAAT
Found at i:60353434 original size:316 final size:317
Alignment explanation
Indices: 60351999--60353622 Score: 2816
Period size: 317 Copynumber: 5.1 Consensus size: 317
60351989 GCCTACTACA
* * *
60351999 ATCATAATTTCCAATTTTATAATTTTACATTATTTTAGTGCATGATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
* * *
60352064 AGTATG-TTTTTAAATTAATTTAGTGTAAAAAAAATCATTATTCCTACCATTTGCTTGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
* *
60352128 TTCCCGAATTTTATTACGTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
60352193 CAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATATTT-TATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
60352258 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
260 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
*
60352316 ATCATAATTTCTAATTTTATAATTTTACATTACTTCAGTGCATTATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
*
60352381 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTCGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
*
60352446 TTCCCGAATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
* *
60352511 CAGTATATTTTGTTTGAAATGTTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACAC
196 CAGTACATTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACAC
* * *
60352576 TCTTACTTCGGCCATTTGTTTGTATTTTTTTCTCCGTATTTTATTACTTTAAAAAAT
261 TCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
* *
60352633 ATCATAATTTTTAATTTTATAATTTTACATTATTTCAGTGCATGATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
*
60352698 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAA-CTTTATTCCTACCATTTGCTTGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
* * *
60352762 TTCCCAAATTTTATTAATTTCAATAAAAATATATTATTTTCGTATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
* *
60352827 CAGTACATTTTTTTTGAAATATTTTTATTAATTATTTCTGAA-TTTTAAAAAATTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATA-TTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
60352891 CTCTTACTTC-GCCATTTGTTCGTATTTTTTTCT-TCGCATTTTATTACTTT-AAAAAT
260 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCT-GCATTTTATTACTTTAAAAAAT
*
60352947 ATCATAATTTCTAATTTTATAATTTTATATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
*
60353012 AGTGTGTTTTTTAAATTAATTTAGTGTCAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
60353077 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
60353142 CAGTACATTTTGTTTGAAATATTTGTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
196 CAGTACATTTTGTTTGAAATATTT-TATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACA
60353207 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTT-AAAAAT
260 CTCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
*
60353264 ATCATAATTTCTAATTTTATAATTTTACATTACTTCAGTGCATTATGTTTGAAATTTATTAATTT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
* * *
60353329 AGTGTATTTTTT-AATTAATTTAGTGTAAAAAAAACCCTTATTCCTGCCATTTGCTCGTATTATT
66 AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
*
60353393 TTCCCGAATTTTATTACTTTCAATAAAAATATATCATTTTCATATTTTATTATTTTATATTATTT
131 TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
60353458 CAGTACATTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACAC
196 CAGTACATTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACAC
* ** *
60353523 TCTTACTTCGGTCATTTGTTCGTATTTTTTTCTCCACATTTTATTATTTTAAAAAAT
261 TCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
**
60353580 ATCATAA-TTAAAATTTTATAATTTTACATTATTTCAGTGCATT
1 ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATT
60353623 TTATTAAATA
Statistics
Matches: 1242, Mismatches: 56, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
314 105 0.08
315 283 0.23
316 318 0.26
317 396 0.32
318 140 0.11
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (317 bp):
ATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAATTTATTAATTT
AGTGTGTTTTTTAAATTAATTTAGTGTAAAAAAAACCCTTATTCCTACCATTTGCTTGTATTATT
TTCCCGAATTTTATTACTTTCAATAAAAATATATTATTTTCATATTTTATTATTTTATATTATTT
CAGTACATTTTGTTTGAAATATTTTATTAATTATTTCTGAATTTTTAAAAAAGTTAGTAAAACAC
TCTTACTTCGGCCATTTGTTCGTATTTTTTTCTCTGCATTTTATTACTTTAAAAAAT
Found at i:60353970 original size:4 final size:4
Alignment explanation
Indices: 60353956--60354146 Score: 57
Period size: 4 Copynumber: 47.2 Consensus size: 4
60353946 AAAAAATTAC
* * * *
60353956 CTTT TTTT CTTT CTTT -TTC CTTC CTTCC CTCTT CT-T CT-T CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTT-T CT-TT CTTT CTTT CTTT CTTT
* * *
60354003 -TTT TTTT CCTCTT C-TC CTTT CCTTTT CTTT CCTT C-TT -TTT CTTT
1 CTTT CTTT -CT-TT CTTT CTTT -CTT-T CTTT CTTT CTTT CTTT CTTT
* *
60354047 CTTT -TTT -TTT CTTCT CCTTT CCTTTT CTTT CCTT CTTT CCTT CTTT
1 CTTT CTTT CTTT CTT-T -CTTT -C-TTT CTTT CTTT CTTT CTTT CTTT
* *
60354093 CCTCTC CTCTC CTTT CCTTTT CTTT C-TT -TTT CTTT CTTT CTTT C-TT
1 -CT-TT CT-TT CTTT -C-TTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
60354139 CTTT -TTT C
1 CTTT CTTT C
60354147 CCTCTCCTTC
Statistics
Matches: 149, Mismatches: 14, Indels: 48
0.71 0.07 0.23
Matches are distributed among these distances:
3 33 0.22
4 73 0.49
5 29 0.19
6 14 0.09
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
CTTT
Found at i:60353974 original size:10 final size:10
Alignment explanation
Indices: 60353959--60354144 Score: 85
Period size: 10 Copynumber: 18.5 Consensus size: 10
60353949 AAATTACCTT
60353959 TTTTTCTTTC
1 TTTTTCTTTC
*
60353969 TTTTTCCTTC
1 TTTTTCTTTC
* **
60353979 CTTCCCTCTTC
1 TTTTTCT-TTC
*
60353990 TTCTTCTTTC
1 TTTTTCTTTC
60354000 TTTTT-TTT-
1 TTTTTCTTTC
**
60354008 TTCCTCTTCTC
1 TTTTTCTT-TC
* *
60354019 CTTTCCTTT-
1 TTTTTCTTTC
* *
60354028 TCTTTCCTTC
1 TTTTTCTTTC
60354038 TTTTTCTTTC
1 TTTTTCTTTC
*
60354048 TTTTTTTTTC
1 TTTTTCTTTC
* *
60354058 TTCTCCTTTC
1 TTTTTCTTTC
*
60354068 CTTTTCTTTCC
1 TTTTTCTTT-C
*
60354079 TTCTTTCCTTC
1 TT-TTTCTTTC
* *
60354090 -TTTCCTCTC
1 TTTTTCTTTC
* * *
60354099 CTCTCCTTTC
1 TTTTTCTTTC
*
60354109 CTTTTCTTTC
1 TTTTTCTTTC
60354119 TTTTTCTTTC
1 TTTTTCTTTC
60354129 TTTCTT-TCTTC
1 TTT-TTCT-TTC
60354140 TTTTT
1 TTTTT
60354145 TCCCTCTCCT
Statistics
Matches: 127, Mismatches: 39, Indels: 20
0.68 0.21 0.11
Matches are distributed among these distances:
8 3 0.02
9 15 0.12
10 82 0.65
11 21 0.17
12 6 0.05
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:60354015 original size:24 final size:25
Alignment explanation
Indices: 60353986--60354056 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
60353976 TTCCTTCCCT
60353986 CTTCTTCTTCTTTCTTTTTTTTTTC
1 CTTCTTCTTCTTTCTTTTTTTTTTC
* * *
60354011 C-TCTTCTCCTTTC-CTTTTCTTTC
1 CTTCTTCTTCTTTCTTTTTTTTTTC
*
60354034 CTTCTTTTTCTTTCTTTTTTTTT
1 CTTCTTCTTCTTTCTTTTTTTTT
60354057 CTTCTCCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 9 0.24
24 21 0.57
25 7 0.19
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (25 bp):
CTTCTTCTTCTTTCTTTTTTTTTTC
Found at i:60354025 original size:5 final size:5
Alignment explanation
Indices: 60354017--60354136 Score: 67
Period size: 5 Copynumber: 25.4 Consensus size: 5
60354007 TTTCCTCTTC
* * * ** *
60354017 TCCTT TCCTT TTCTT TCC-T TCTTT TTCTT T-CTT TTTTT TTCTT CTCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT -TCCTT
* * *
60354066 TCCTT TTCTT TCC-T T-CTT TCC-T T-CTT TCCTC TCCTC TCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* * *
60354112 TTCTT TCTTT TTCTT T-CTT T-CTT TC
1 TCCTT TCCTT TCCTT TCCTT TCCTT TC
60354137 TTCTTTTTTC
Statistics
Matches: 90, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
3 2 0.02
4 23 0.26
5 61 0.68
6 4 0.04
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (5 bp):
TCCTT
Found at i:60354146 original size:18 final size:18
Alignment explanation
Indices: 60353956--60354138 Score: 81
Period size: 18 Copynumber: 9.8 Consensus size: 18
60353946 AAAAAATTAC
*
60353956 CTTTTTTTCTTTCTTTTT
1 CTTTCTTTCTTTCTTTTT
* * *
60353974 CCTTCCTTCCCTCTTCTTCTT
1 -CTTTCTT-TCT-TTCTTTTT
*
60353995 CTTTCTTT-TTT-TTTTC
1 CTTTCTTTCTTTCTTTTT
* *
60354011 CTCTTC-TCCTTTCCTTTT
1 CT-TTCTTTCTTTCTTTTT
*
60354029 CTTTCCTTCTTT-TTCTTT
1 CTTTCTTTCTTTCTT-TTT
* *
60354047 CTTT-TTT-TTTCTTCTC
1 CTTTCTTTCTTTCTTTTT
60354063 CTTTCCTTTTCTTTCCTTCTTT
1 CTTT-C-TTTCTTT-CTT-TTT
* * * * *
60354085 CCTTCTTTCCTCTCCTCTC
1 CTTTCTTT-CTTTCTTTTT
60354104 CTTTCCTTTTCTTTCTTTTT
1 CTTT-C-TTTCTTTCTTTTT
60354124 CTTTCTTTCTTTCTT
1 CTTTCTTTCTTTCTT
60354139 CTTTTTTCCC
Statistics
Matches: 119, Mismatches: 28, Indels: 35
0.65 0.15 0.19
Matches are distributed among these distances:
16 14 0.12
17 16 0.13
18 28 0.24
19 13 0.11
20 27 0.23
21 17 0.14
22 4 0.03
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTCTTTCTTTCTTTTT
Found at i:60354227 original size:27 final size:27
Alignment explanation
Indices: 60354197--60354267 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
60354187 ATTATATAGG
**
60354197 CAGTGCCGCCTATGGGAGGGGCACCAT
1 CAGTGCCGCCTATGGGAAAGGCACCAT
*
60354224 CAGTGCCGCCTATGGGAAAGGCACCTT
1 CAGTGCCGCCTATGGGAAAGGCACCAT
**
60354251 TGGTGCCGCCTATGGGA
1 CAGTGCCGCCTATGGGA
60354268 TACCCTCCTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.18, C:0.28, G:0.35, T:0.18
Consensus pattern (27 bp):
CAGTGCCGCCTATGGGAAAGGCACCAT
Found at i:60355435 original size:13 final size:13
Alignment explanation
Indices: 60355417--60355441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60355407 ATTTTAAACA
60355417 AACTTAATTTTTG
1 AACTTAATTTTTG
60355430 AACTTAATTTTT
1 AACTTAATTTTT
60355442 TTTTGTCCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
AACTTAATTTTTG
Found at i:60361904 original size:23 final size:24
Alignment explanation
Indices: 60361851--60361904 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
60361841 AATAAAAATG
*
60361851 TATAATTTAAGAAAAAAATTAAAA
1 TATAATTCAAGAAAAAAATTAAAA
60361875 TCA-AATTCAA-AATAAAAA-TAAAA
1 T-ATAATTCAAGAA-AAAAATTAAAA
60361898 TATAATT
1 TATAATT
60361905 AAATTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
22 1 0.04
23 12 0.46
24 12 0.46
25 1 0.04
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
TATAATTCAAGAAAAAAATTAAAA
Found at i:60368703 original size:15 final size:15
Alignment explanation
Indices: 60368678--60368712 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
60368668 GACTCTATTT
*
60368678 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
60368692 TAATTAATATTAAGA
1 TAATTAATATTAAGA
60368707 TAATTA
1 TAATTA
60368713 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:60369889 original size:19 final size:19
Alignment explanation
Indices: 60369861--60369971 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
60369851 AATCTTCAGG
*
60369861 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
60369880 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
* *
60369899 AATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
60369918 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
* *
60369937 GATATATAATTTTAGATAT
1 GATATACAATCTTAGATAT
*
60369956 GATATGCAATCTTAGA
1 GATATACAATCTTAGA
60369972 AGATATGATT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 80 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:60369911 original size:38 final size:38
Alignment explanation
Indices: 60369868--60369971 Score: 181
Period size: 38 Copynumber: 2.7 Consensus size: 38
60369858 AGGGATATGC
*
60369868 AATCTTAGATATGATATACAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
60369906 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
60369944 AATTTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
60369972 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:60369997 original size:22 final size:22
Alignment explanation
Indices: 60369861--60369994 Score: 66
Period size: 19 Copynumber: 6.7 Consensus size: 22
60369851 AATCTTCAGG
60369861 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
* *
60369880 GATATACAATCTTAG-ATATAAT
1 GATATGCAATCTTAGAAGAT-AT
60369902 -ATAT--AATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
60369918 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
** * *
60369937 GATATATAATTTTAG-A-T-AT
1 GATATGCAATCTTAGAAGATAT
60369956 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
60369978 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
60369995 GATTTAATTT
Statistics
Matches: 90, Mismatches: 13, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
16 2 0.02
17 7 0.08
19 54 0.60
20 1 0.01
21 8 0.09
22 6 0.07
23 12 0.13
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:60371813 original size:29 final size:28
Alignment explanation
Indices: 60371751--60371816 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
60371741 CCAAAACTTG
60371751 AAATTTAATTATTTTATATTTATTGTTA
1 AAATTTAATTATTTTATATTTATTGTTA
* * *
60371779 AGAATTTATTTTTTTTATTTTTAGATT-TTA
1 A-AATTTAATTATTTTATATTT--ATTGTTA
60371809 AAATTTAA
1 AAATTTAA
60371817 GGTTCAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
28 1 0.03
29 23 0.74
30 4 0.13
31 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (28 bp):
AAATTTAATTATTTTATATTTATTGTTA
Found at i:60371865 original size:20 final size:20
Alignment explanation
Indices: 60371809--60371867 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 20
60371799 TTAGATTTTA
* *
60371809 AAATTTAAGGTTCAATTTGTT
1 AAATTTAA-GTTTATTTTGTT
*
60371830 AATATCGTTAAATTTATTTTGTT
1 AA-AT--TTAAGTTTATTTTGTT
60371853 AAATTTAAGTTTATT
1 AAATTTAAGTTTATT
60371868 ACAAAAGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
20 10 0.32
21 2 0.06
22 4 0.13
23 11 0.35
24 4 0.13
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.53
Consensus pattern (20 bp):
AAATTTAAGTTTATTTTGTT
Found at i:60376518 original size:6 final size:6
Alignment explanation
Indices: 60376509--60376579 Score: 70
Period size: 6 Copynumber: 11.8 Consensus size: 6
60376499 GGACTTAGGC
* * * * *
60376509 CCATCA CCATCA CCATCC CCATCA TCATCC CCATCT CCATCT CCATCA
1 CCATCA CCATCA CCATCA CCATCA CCATCA CCATCA CCATCA CCATCA
* * *
60376557 TCATCA CCATCA TCATCC CCATC
1 CCATCA CCATCA CCATCA CCATC
60376580 GTCATCCCCA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.25, C:0.51, G:0.00, T:0.24
Consensus pattern (6 bp):
CCATCA
Found at i:60376530 original size:12 final size:12
Alignment explanation
Indices: 60376510--60376589 Score: 99
Period size: 12 Copynumber: 6.7 Consensus size: 12
60376500 GACTTAGGCC
* *
60376510 CATCACCATCAC
1 CATCCCCATCAT
60376522 CATCCCCATCAT
1 CATCCCCATCAT
60376534 CATCCCCATC-T
1 CATCCCCATCAT
*
60376545 CCATCTCCATCAT
1 -CATCCCCATCAT
*
60376558 CATCACCATCAT
1 CATCCCCATCAT
*
60376570 CATCCCCATCGT
1 CATCCCCATCAT
60376582 CATCCCCA
1 CATCCCCA
60376590 AATCTGGCCC
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
11 1 0.02
12 58 0.97
13 1 0.02
ACGTcount: A:0.25, C:0.50, G:0.01, T:0.24
Consensus pattern (12 bp):
CATCCCCATCAT
Found at i:60376651 original size:15 final size:15
Alignment explanation
Indices: 60376609--60376658 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
60376599 CCAGCCCCTT
*
60376609 CTGATTCCAAAGTTC
1 CTGATTCCAAAGCTC
* ** *
60376624 CTGAATCTGAAGCTG
1 CTGATTCCAAAGCTC
60376639 CTGATTCCAAAGCTC
1 CTGATTCCAAAGCTC
60376654 CTGAT
1 CTGAT
60376659 GTTAGGCCAA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (15 bp):
CTGATTCCAAAGCTC
Found at i:60377145 original size:6 final size:6
Alignment explanation
Indices: 60377136--60377175 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
60377126 GCTGGTGCTT
* * *
60377136 CTGCCA CTGCCA CTGCCA CTGCCG CTGCCG CTGCCG CTGC
1 CTGCCA CTGCCA CTGCCA CTGCCA CTGCCA CTGCCA CTGC
60377176 TGGTGCCAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.07, C:0.50, G:0.25, T:0.17
Consensus pattern (6 bp):
CTGCCA
Found at i:60377153 original size:12 final size:12
Alignment explanation
Indices: 60377136--60377175 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
60377126 GCTGGTGCTT
*
60377136 CTGCCACTGCCA
1 CTGCCACTGCCG
60377148 CTGCCACTGCCG
1 CTGCCACTGCCG
*
60377160 CTGCCGCTGCCG
1 CTGCCACTGCCG
60377172 CTGC
1 CTGC
60377176 TGGTGCCAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.50, G:0.25, T:0.17
Consensus pattern (12 bp):
CTGCCACTGCCG
Found at i:60381436 original size:9 final size:9
Alignment explanation
Indices: 60381422--60381493 Score: 74
Period size: 9 Copynumber: 7.9 Consensus size: 9
60381412 TTATAACTTA
*
60381422 AAAAATTGT
1 AAAAATTAT
60381431 AAAAATTAT
1 AAAAATTAT
* *
60381440 TAGAATTAT
1 AAAAATTAT
60381449 AAAAATTAT
1 AAAAATTAT
*
60381458 AAAAATTAA
1 AAAAATTAT
60381467 AAAAATCT-T
1 AAAAAT-TAT
*
60381476 AAAATATAAT
1 AAAA-ATTAT
60381486 AAAAATTA
1 AAAAATTA
60381494 CTTTAAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 43 0.84
10 8 0.16
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:60381440 original size:27 final size:27
Alignment explanation
Indices: 60381406--60381465 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
60381396 GGCGTAATTT
* *
60381406 AAAA-TATTATAACTTA-AAAAATTGTA
1 AAAATTATTAGAA-TTATAAAAATTATA
60381432 AAAATTATTAGAATTATAAAAATTATA
1 AAAATTATTAGAATTATAAAAATTATA
60381459 AAAATTA
1 AAAATTA
60381466 AAAAAATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (27 bp):
AAAATTATTAGAATTATAAAAATTATA
Found at i:60385203 original size:46 final size:46
Alignment explanation
Indices: 60385136--60385412 Score: 423
Period size: 46 Copynumber: 6.0 Consensus size: 46
60385126 CATGGCAAAG
60385136 TGTGAAACA-TAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAA-AGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
*
60385182 TGTGAAAAGTAGGTATGGTATTTC-GATAAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCAG-TGAAGAAAACCATACTGAGT
* ** * *
60385228 TGTGAAAAGTAGGTATGATGCTTCACTGAAGAACACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
*
60385274 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
*
60385320 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
* * *
60385366 TGTAAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATATTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
60385412 T
1 T
60385413 ATAGAAATGT
Statistics
Matches: 213, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
45 2 0.01
46 211 0.99
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
Found at i:60394855 original size:10 final size:9
Alignment explanation
Indices: 60394817--60394855 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
60394807 TTAAAAGGTT
60394817 ATTATAAAA
1 ATTATAAAA
60394826 ATTATAAAA
1 ATTATAAAA
60394835 A-TATAAAAA
1 ATTAT-AAAA
60394844 ATTATTAAAA
1 ATTA-TAAAA
60394854 AT
1 AT
60394856 ACCGTTTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 3 0.11
9 15 0.56
10 8 0.30
11 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
ATTATAAAA
Found at i:60399047 original size:4 final size:4
Alignment explanation
Indices: 60399038--60399063 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
60399028 CATTTCCATC
60399038 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
60399064 AATCCAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:60406011 original size:16 final size:16
Alignment explanation
Indices: 60405990--60406020 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60405980 GGATATGGTA
60405990 AAATATTGAAAAAAAT
1 AAATATTGAAAAAAAT
*
60406006 AAATATTTAAAAAAA
1 AAATATTGAAAAAAA
60406021 ATACATTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
AAATATTGAAAAAAAT
Found at i:60406619 original size:105 final size:105
Alignment explanation
Indices: 60406494--60406690 Score: 342
Period size: 105 Copynumber: 1.9 Consensus size: 105
60406484 TAAAATGTCT
60406494 TCATAATAAAATTAATTACCCTTTAAAGTAAGGGTGTTTTTAGTAATTTCACAACTGACTTAGTT
1 TCATAATAAAATTAATTACCCTTTAAAGTAAGGGTGTTTTTAGTAATTTCACAACTGACTTAGTT
*
60406559 TCGAGTTGAC-CTGTGAGACCAACTCAGCATGAAAATACTC
66 TCGAGTTGACTC-GTGACACCAACTCAGCATGAAAATACTC
* * *
60406599 TCATAATAATATTAATTACCCTTTAAAGTAAGGGTGTTTTTAGTAATTTTACAACTGAGTTAGTT
1 TCATAATAAAATTAATTACCCTTTAAAGTAAGGGTGTTTTTAGTAATTTCACAACTGACTTAGTT
60406664 TCGAGTTGACTCGTGACACCAACTCAG
66 TCGAGTTGACTCGTGACACCAACTCAG
60406691 TTAGACACTT
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
105 86 0.99
106 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (105 bp):
TCATAATAAAATTAATTACCCTTTAAAGTAAGGGTGTTTTTAGTAATTTCACAACTGACTTAGTT
TCGAGTTGACTCGTGACACCAACTCAGCATGAAAATACTC
Found at i:60409205 original size:3 final size:3
Alignment explanation
Indices: 60409197--60409230 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
60409187 GTTTATAATT
* *
60409197 ATC ATC ATC ATC ACC ATC ATC ATT ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
60409231 CGGGACAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:60412441 original size:15 final size:15
Alignment explanation
Indices: 60412421--60412451 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
60412411 TTTATTTTTC
60412421 AACAATAAAATGCTA
1 AACAATAAAATGCTA
60412436 AACAATAAAATGCTA
1 AACAATAAAATGCTA
60412451 A
1 A
60412452 CAGGATAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.06, T:0.19
Consensus pattern (15 bp):
AACAATAAAATGCTA
Found at i:60419558 original size:25 final size:27
Alignment explanation
Indices: 60419537--60419589 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
60419527 TCTAATTTTA
60419537 AGGTCCTAAAATCACTATAATTGATAC
1 AGGTCCTAAAATCACTATAATTGATAC
* * *
60419564 ATGTCCTAAAATCACTCTAGTTGATA
1 AGGTCCTAAAATCACTATAATTGATA
60419590 TTTTCCACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (27 bp):
AGGTCCTAAAATCACTATAATTGATAC
Found at i:60432428 original size:228 final size:228
Alignment explanation
Indices: 60432030--60433613 Score: 1526
Period size: 228 Copynumber: 6.9 Consensus size: 228
60432020 GTTGGCAGCA
* * * * * *
60432030 GATGCAGATCTTTGTGAAAACCCTT-ACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCCGAT
1 GATGCAGATATTTGTGAAAA-CCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGAT
* * * * * * * *
60432094 ACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAACAAAGGCT
65 ACCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGG-T
* * * ** * * * *
60432159 T-ATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAACATCCAAAAGGAG
129 TGATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAG
* * * * * * *
60432223 TCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGG
194 TCCACCCTGCACTTGGTCCTTCGACTTAGAGGAGG
* * * * * * * *
60432258 CATGCAGATATTTGTGAAAACCCTT-ACTGGCAAGACCATCACCCTCGAGTTGGAAAGTTCTGAT
1 GATGCAGATATTTGTGAAAA-CCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGAT
* * * * *
60432322 ACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCAGACCAACAGAGGCT
65 ACCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGG-T
* * * ** * * * *
60432387 T-ATCTTTGCAGGTAAA-CAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAA-G
129 TGATTTTTGCCGG-AAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCA-AAAGG
* * * * *
60432449 AGTCTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGG
192 AGTCCACCCTGCA-CTTGGTCCTTCGACTTAGAGGAGG
* * * * *
60432486 GATGCAGATCTTTGTAAAAACCCTT-ACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGAT
1 GATGCAGATATTTGTGAAAA-CCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGAT
* * * * * *
60432550 ACTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTT
65 ACCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGGTT
* *
60432615 GATTTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACACTTGCGGATTATAACATCCAAAAGGAGT
130 GATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAGT
* * * ** * *
60432680 CAACCCTGCACTTGGTGCTGCGACTGCGTGGTGG
195 CCACCCTGCACTTGGTCCTTCGACTTAGAGGAGG
* * * * * * ** *
60432714 AATGCAGATTTTTGTGAAAACTTTGACTGGAAAAACTATTACATTGGAGGTGGAGAGCTCAGATA
1 GATGCAGATATTTGTGAAAACCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGATA
* * * * * *
60432779 CAATTGATAACGTGAAGGCCAAGATTCAGGACAAGG-AGGGTATCCCACCTGACCAGCAGAGGTT
66 CCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGG-ATTCCTCCAGACCAGCAGAGGTT
* * * * * *
60432843 GATTTTTGCTGGAAAGCAACTCGAGGATGGGAGGACGCTTGCGGATTATAGCATCCAAAAGGAGT
130 GATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAGT
* * * * *
60432908 CAACCCTGCACTTGGTTCTGCGCCTTCGAGGAGG
195 CCACCCTGCACTTGGTCCTTCGACTTAGAGGAGG
* * * * * * *
60432942 GATGCAGATATTCGTTAAGACCTTGACTGGTAAAACCATAACACTGGAGGTCGAGAGCTCGGACA
1 GATGCAGATATTTGTGAAAACCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGATA
* * * *
60433007 CCATTGACAATGTTAAAGCGAAGATTCAGGACAAGG-AGGGAATTCCTCCAGACCAGCAGAGGTT
66 CCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGG-ATTCCTCCAGACCAGCAGAGGTT
* *
60433071 GATTTTTGCTGGAAAGCAGCTTGAGGATGGGAGGACACTCGCGGACTATAACATCCAAAAGGAGT
130 GATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAGT
* *
60433136 CCACCCTGCACTTGGT-TTTGCGACTTCGAGGAGG
195 CCACCCTGCACTTGGTCCTT-CGACTTAGAGGAGG
* * * *
60433170 GATGCAGATATTTGTTAAGACCTTGACTGGTAAAACCATCACCCTGGAGGTCGAGAGCTCGGACA
1 GATGCAGATATTTGTGAAAACCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGATA
* * * * * *
60433235 CCATTGACAATGTTAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTG
66 CCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGGTTG
* *
60433300 ATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATTCAAAAGGAATC
131 ATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAGTC
* * *
60433365 CACCCTGCATTTGGT-TTTGCGCCTTAGAGGAGG
196 CACCCTGCACTTGGTCCTT-CGACTTAGAGGAGG
* * * * *
60433398 GATGCAGATATTCGTGAAGACTTTGACTGGGAAAACCATCACCCTGGAGGTGGAGAGCTCGGACA
1 GATGCAGATATTTGTGAAAACCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGATA
* * * * * *
60433463 CGATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTG
66 CCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGGTTG
* * * ** * * * *
60433528 ATCTTTGCTGGGAAGCAG-TTGGAGGAT-GGTCGA-ACTTTAGCAGACTACAATATCCAGAAGGA
131 ATTTTTGCCGGAAAGCAGCTT-GAGGATGGGAGGACAC-TT-GCGGACTATAACATCCAAAAGGA
*
60433590 GTCCACTCTGCATCTT-GTCCTTCG
193 GTCCACCCTGCA-CTTGGTCCTTCG
60433614 CCTCCGTGGT
Statistics
Matches: 1188, Mismatches: 152, Indels: 32
0.87 0.11 0.02
Matches are distributed among these distances:
226 2 0.00
227 27 0.02
228 1144 0.96
229 15 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (228 bp):
GATGCAGATATTTGTGAAAACCTTGACTGGTAAAACCATCACCCTGGAGGTGGAGAGCTCGGATA
CCATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATTCCTCCAGACCAGCAGAGGTTG
ATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCGGACTATAACATCCAAAAGGAGTC
CACCCTGCACTTGGTCCTTCGACTTAGAGGAGG
Found at i:60434869 original size:9 final size:9
Alignment explanation
Indices: 60434847--60434937 Score: 53
Period size: 9 Copynumber: 9.7 Consensus size: 9
60434837 CCGAATAATA
60434847 AATTTTTTT
1 AATTTTTTT
60434856 -ATTTTTTT
1 AATTTTTTT
* **
60434864 -ACTTTTAA
1 AATTTTTTT
60434872 AATACTTTTTTT
1 AAT--TTTT-TT
60434884 AATTTTTTT
1 AATTTTTTT
**
60434893 AA-TTTTAA
1 AATTTTTTT
60434901 AATTTTTTT
1 AATTTTTTT
60434910 AAAATACTTTTTT
1 --AAT--TTTTTT
60434923 AATTTTTTT
1 AATTTTTTT
60434932 AATTTT
1 AATTTT
60434938 AAAATATTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
8 19 0.30
9 21 0.33
10 4 0.06
11 10 0.16
12 3 0.05
13 6 0.10
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (9 bp):
AATTTTTTT
Found at i:60434889 original size:28 final size:29
Alignment explanation
Indices: 60434849--60434928 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
60434839 GAATAATAAA
*
60434849 TTTTTTT-ATTTTTTTACTTTTAAAATAC
1 TTTTTTTAATTTTTTTAATTTTAAAATAC
60434877 TTTTTTTAATTTTTTTAATTTTAAAAT--
1 TTTTTTTAATTTTTTTAATTTTAAAATAC
*
60434904 TTTTTTAAAATACTTTTTTAATTTT
1 TTTTTT-TAAT--TTTTTTAATTTT
60434929 TTTAATTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.13
28 10 0.22
29 18 0.39
30 12 0.26
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.69
Consensus pattern (29 bp):
TTTTTTTAATTTTTTTAATTTTAAAATAC
Found at i:60434892 original size:39 final size:38
Alignment explanation
Indices: 60434847--60434969 Score: 128
Period size: 39 Copynumber: 3.2 Consensus size: 38
60434837 CCGAATAATA
60434847 AATTTTTTT-ATTTT-TTTACTTTTAAAATACTTTTTTT
1 AATTTTTTTAATTTTATTTA-TTTTAAAATACTTTTTTT
60434884 AATTTTTTTAATTTTAAAATTT-TTTTAAAATAC-TTTTTT
1 AATTTTTTTAATTTT---ATTTATTTTAAAATACTTTTTTT
** **
60434923 AATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAA
1 AATTTTTTTAATTTT-ATTTA-TTTTAAAATACTTTTTTT
60434963 AATTTTT
1 AATTTTT
60434970 ATTTTAATTT
Statistics
Matches: 74, Mismatches: 4, Indels: 13
0.81 0.04 0.14
Matches are distributed among these distances:
37 12 0.16
38 5 0.07
39 32 0.43
40 22 0.30
42 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (38 bp):
AATTTTTTTAATTTTATTTATTTTAAAATACTTTTTTT
Found at i:60434909 original size:11 final size:11
Alignment explanation
Indices: 60434895--60434969 Score: 56
Period size: 11 Copynumber: 7.2 Consensus size: 11
60434885 ATTTTTTTAA
60434895 TTTTAAAATTT
1 TTTTAAAATTT
60434906 TTTTAAAATACTT
1 TTTTAAAAT--TT
60434919 TTTT--AATTT
1 TTTTAAAATTT
60434928 TTTT--AA---
1 TTTTAAAATTT
*
60434934 TTTTAAAATAT
1 TTTTAAAATTT
*
60434945 TTTTAAAATACT
1 TTTTAAAAT-TT
60434957 TTTTAAAATTT
1 TTTTAAAATTT
60434968 TT
1 TT
60434970 ATTTTAATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
6 4 0.07
8 2 0.04
9 8 0.15
11 24 0.44
12 10 0.19
13 6 0.11
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:60434916 original size:40 final size:40
Alignment explanation
Indices: 60434866--60434987 Score: 174
Period size: 39 Copynumber: 3.0 Consensus size: 40
60434856 ATTTTTTTAC
*
60434866 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTAAAATTT
1 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTAAAATAT
60434906 TTTTAAAATAC-TTTTTTAATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTAAAATAT
**
60434945 TTTTAAAATACTTTTTAAAATTTTTATTTTAATTTTTAAAATA
1 TTTTAAAATACTTTTTTTAA--TTT-TTTTAA-TTTTAAAATA
60434988 AATTTTTGGT
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
39 38 0.51
40 17 0.23
42 3 0.04
43 6 0.08
44 10 0.14
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (40 bp):
TTTTAAAATACTTTTTTTAATTTTTTTAATTTTAAAATAT
Found at i:60434930 original size:8 final size:9
Alignment explanation
Indices: 60434877--60434937 Score: 61
Period size: 9 Copynumber: 6.4 Consensus size: 9
60434867 TTTAAAATAC
60434877 TTTTTTTAA
1 TTTTTTTAA
60434886 TTTTTTTAA
1 TTTTTTTAA
**
60434895 -TTTTAAAA
1 TTTTTTTAA
60434903 TTTTTTTAAAA
1 TTTTTTT--AA
60434914 TACTTTTTTAA
1 T--TTTTTTAA
60434925 TTTTTTTAA
1 TTTTTTTAA
60434934 TTTT
1 TTTT
60434938 AAAATATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.14
9 25 0.58
11 6 0.14
13 6 0.14
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:60434959 original size:28 final size:28
Alignment explanation
Indices: 60434906--60434959 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
60434896 TTTAAAATTT
* **
60434906 TTTTAAAATACTTTTTTAATTTTTTTAA
1 TTTTAAAATACTTTTTAAATACTTTTAA
60434934 TTTTAAAATA-TTTTTAAAATACTTTT
1 TTTTAAAATACTTTTT-AAATACTTTT
60434960 TAAAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTAAAATACTTTTTAAATACTTTTAA
Found at i:60434980 original size:21 final size:21
Alignment explanation
Indices: 60434928--60434986 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
60434918 TTTTTAATTT
*
60434928 TTTTAATTTTAAAATATTTTTA
1 TTTTAATTTTTAAA-ATTTTTA
*** *
60434950 AAATACTTTTTAAAATTTTTA
1 TTTTAATTTTTAAAATTTTTA
60434971 TTTTAATTTTTAAAAT
1 TTTTAATTTTTAAAAT
60434987 AAATTTTTGG
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTAATTTTTAAAATTTTTA
Found at i:60437122 original size:8 final size:8
Alignment explanation
Indices: 60437111--60437136 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
60437101 TTATTATAAG
60437111 ATATTTTA
1 ATATTTTA
60437119 ATATTTTA
1 ATATTTTA
60437127 ATATTTTA
1 ATATTTTA
60437135 AT
1 AT
60437137 TAATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATATTTTA
Found at i:60439266 original size:228 final size:227
Alignment explanation
Indices: 60438868--60440430 Score: 1328
Period size: 228 Copynumber: 6.9 Consensus size: 227
60438858 GTTGACAGCA
* * * * *
60438868 GATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCTGATA
1 GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * * * * * * * * *
60438933 CTATCGATAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATCCCTCCTGACCAGCAAAGGCTT
66 CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-TT
* * * * * *
60438998 -ATCTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAATATCCAAAAGGAGT
130 GATTTTTGCCGG-AAACAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCAAAAGGAGT
* * *
60439062 CCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGG
194 CTACCCTCCACCTGGTCCTTCGTCTTAGGGGTGG
* * * * * * *
60439096 CATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTCTGATA
1 GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * * *
60439161 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT
66 CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-TT
* * *
60439226 -ATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAA-GAG
130 GATTTTTGCCGG-AAACAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCA-AAAGGAG
*
60439289 TCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG
193 TCTACCCTCCACCTGGTCCTTCGTCTTAGGGGTGG
* * * * * *
60439324 GATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATA
1 GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * * *
60439389 CTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTG
66 CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
* * ** * * *
60439454 ATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAA-GAGT
131 ATTTTTGCCGG-AAACAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCA-AAAGGAGT
*
60439518 CTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG
194 CTACCCTCCACCTGGTCCTTCGTCTTAGGGGTGG
* * * * * * * **
60439552 GATGCAGATTTTTGTAAAAACCCTCACCGGAAAAACTATTACATTGGAGGTGGAGAGTTCTGATA
1 GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * * * * *
60439617 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGGATCCCACCGGACCAGCAGAGGTTG
66 CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
* * * * * *
60439682 ATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCGGACTATAACATTCAGAAGGAATC
131 ATTTTTGCCGGAAA-CAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCAAAAGGAGTC
* ** * ** *
60439747 GACCCTCCATTTGGT-GTTACGTCTCCGTGGTGG
195 TACCCTCCACCTGGTCCTT-CGTCTTAGGGGTGG
* * * * * * * * * ** * * *
60439780 CATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTTCTGACA
1 GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
* * * * * *
60439845 CCGTTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTG
66 CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
* * ** * * * * *
60439910 ATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAA-GAGT
131 ATTTTTGCCGG-AAACAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCA-AAAGGAGT
* * * * * * *
60439974 CTACCCTCCACTTGGTGCTCCGACTTCGAGGAGG
194 CTACCCTCCACCTGGTCCTTCGTCTTAGGGGTGG
* * * * * * *
60440008 GATGCAGATATTCGTGAAGA-CCTTGACCGGTAAAACCATCACCCTGGAGGTCGAGAGCTCGGAC
1 GATGCAGATATTTGTGAAAACCCTT-ACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * *
60440072 ACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTT
65 ACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* ** * * * *
60440137 GATTTTTGCCGGAAAGCAGCTTGAGGATGGGAGGACACTTGCAGACTATAACATCCAAAAGGAAT
130 GATTTTTGCCGGAAA-CAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCAAAAGGAGT
* * ** * * * * *
60440202 CGACCCTGCATTTGGT-TTTACGACTTCGAGGAGG
194 CTACCCTCCACCTGGTCCTT-CGTCTTAGGGGTGG
* * * * * * *
60440236 GATGCAGATATTCGTGAAGA-CCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGTTCAGAC
1 GATGCAGATATTTGTGAAAACCCTT-ACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGAT
* * * * * * * *
60440300 ACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTT
65 ACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* * * * * * * * *
60440365 GATATTTGCTGGGAAGCAG-TTGGAGGATGGTCGAACTCTAGCTGACTACAATATCCAGAAGGAG
130 GATTTTTGC-CGGAAACAGCTT-GAAGATGGCCGAACTCTTGCAGACTACAACATCCAAAAGGAG
60440429 TC
193 TC
60440431 CACACTGCAT
Statistics
Matches: 1130, Mismatches: 191, Indels: 28
0.84 0.14 0.02
Matches are distributed among these distances:
227 20 0.02
228 1097 0.97
229 13 0.01
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (227 bp):
GATGCAGATATTTGTGAAAACCCTTACCGGTAAGACCATCACCCTGGAGGTGGAGAGTTCTGATA
CCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
ATTTTTGCCGGAAACAGCTTGAAGATGGCCGAACTCTTGCAGACTACAACATCCAAAAGGAGTCT
ACCCTCCACCTGGTCCTTCGTCTTAGGGGTGG
Found at i:60439721 original size:456 final size:456
Alignment explanation
Indices: 60438868--60440373 Score: 1610
Period size: 456 Copynumber: 3.3 Consensus size: 456
60438858 GTTGACAGCA
* * * *
60438868 GATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGTTCTGATA
1 GATGCAGATCTTTGTGAAAACCCTTACCGGTAAGACCATCACCCTTGAGGTGGAGAGTTCTGACA
* * * * * * * *
60438933 CTATCGATAATGTCAAGGCTAAAATCCAAGACAAAGAAGGGATCCCTCCTGACCAGCAAAGGCTT
66 CTATCGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGG-TT
* * ** * * * *
60438998 -ATCTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAATATCCA-AAAGGAG
130 GATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAATATCCAGAAA-GAG
* * * * * * *
60439061 TCCACCCTCCACCTAGTCCTTCGTCTAAGGGGTGGCATGCAGATATTCGTGAAAACTCTTACTGG
194 TCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATATTCGTGAAAACCCTCACCGG
* * * * * *
60439126 CAAGACCATCACCCTCGAGGTGGAAAGTTCTGATACAATTGATAATGTCAAGGCCAAGATCCAAG
259 AAAAACCATCACCCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCCAAGATTCAGG
* *
60439191 ACAAGGAAGGGATCCCACCAGACCAACAGAGGCTT-ATCTTTGCCGGTAAA-CAGCTTGAAGATG
324 ACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTGATTTTTGCCGG-AAAGCAGCTTGAAGATG
* * * * * *
60439254 GCCGAACTCTTGCGGATTACAACATCCAGAAAGAGTCTACCCTCCACCTT-GTCCTT-CGTCTTA
387 GCCGAACTCTTGCGGACTATAACATCCAGAAAGAATCGACCCTCCA-TTTGGT-CTTACGTCTTC
*
60439317 GGGGTGG
450 GAGGTGG
* * * * *
60439324 GATGCAGATCTTTGTAAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATA
1 GATGCAGATCTTTGTGAAAACCCTTACCGGTAAGACCATCACCCTTGAGGTGGAGAGTTCTGACA
* * * *
60439389 CTATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTG
66 CTATCGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
*
60439454 ATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTC
131 ATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAATATCCAGAAAGAGTC
* * *
60439519 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATTTTTGTAAAAACCCTCACCGGAA
196 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATATTCGTGAAAACCCTCACCGGAA
* * ** * * *
60439584 AAACTATTACATTGGAGGTGGAGAGTTCTGATACGATTGATAATGTTAAGGCCAAGATTCAGGAT
261 AAACCATCACCCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCCAAGATTCAGGAC
* *
60439649 AAGGAAGGGATCCCACCGGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCG
326 AAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCG
* * * * *
60439714 AACTCTTGCGGACTATAACATTCAGAAGGAATCGACCCTCCATTTGGTGTTACGTCTCCGTGGTG
391 AACTCTTGCGGACTATAACATCCAGAAAGAATCGACCCTCCATTTGGTCTTACGTCTTCGAGGTG
60439779 G
456 G
* * * * * * * * * * * *
60439780 CATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTA-CTTTGGAAGTTGAGAGTTCTGAC
1 GATGCAGATCTTTGTGAAAACCCTTACCGGTAAGACCATCACCCTT-GAGGTGGAGAGTTCTGAC
** * * * *
60439844 ACCGTTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTT
65 ACTATCGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
* * * *
60439909 GATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGAAAGAGT
130 GATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAATATCCAGAAAGAGT
* * * * * * * * *
60439974 CTACCCTCCA-CTTGGTGCTCCGACTTCGAGGAGGGATGCAGATATTCGTGAAGACCTTGACCGG
195 CTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGGGATGCAGATATTCGTGAAAACCCTCACCGG
* * * * * * * * * *
60440038 TAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTCAAAGCGAAAATTCAGG
259 AAAAACCATCACCCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCCAAGATTCAGG
* * * * *
60440103 ACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGAGGATGGG
324 ACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGAAGATGGC
* * * * * * *
60440168 AGGACACTTGCAGACTATAACATCCA-AAAGGAATCGACCCTGCATTTGGTTTTACGACTTCGAG
389 CGAACTCTTGCGGACTATAACATCCAGAAA-GAATCGACCCTCCATTTGGTCTTACGTCTTCGAG
*
60440232 GAGG
453 GTGG
* * * * * * * *
60440236 GATGCAGATATTCGTGAAGA-CCTTGACCGGGAAAACAATCACCCTGGAGGTGGAGAGTTCAGAC
1 GATGCAGATCTTTGTGAAAACCCTT-ACCGGTAAGACCATCACCCTTGAGGTGGAGAGTTCTGAC
* * * * * *
60440300 ACGATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAGGGGATTCCACCAGACCAGCAGAGGTT
65 ACTATCGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTT
*
60440365 GATATTTGC
130 GATTTTTGC
60440374 TGGGAAGCAG
Statistics
Matches: 878, Mismatches: 161, Indels: 22
0.83 0.15 0.02
Matches are distributed among these distances:
455 21 0.02
456 852 0.97
457 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (456 bp):
GATGCAGATCTTTGTGAAAACCCTTACCGGTAAGACCATCACCCTTGAGGTGGAGAGTTCTGACA
CTATCGACAATGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTG
ATTTTTGCCGGAAAACAACTCGAAGATGGTAGGACACTTGCAGATTACAATATCCAGAAAGAGTC
TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATATTCGTGAAAACCCTCACCGGAA
AAACCATCACCCTGGAGGTGGAGAGTTCTGATACAATTGATAATGTCAAGGCCAAGATTCAGGAC
AAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCG
AACTCTTGCGGACTATAACATCCAGAAAGAATCGACCCTCCATTTGGTCTTACGTCTTCGAGGTG
G
Found at i:60440459 original size:684 final size:684
Alignment explanation
Indices: 60438962--60440463 Score: 1647
Period size: 684 Copynumber: 2.2 Consensus size: 684
60438952 TAAAATCCAA
* * * * * * * * *
60438962 GACAAAGAAGGGATCCCTCCTGACCAGCAAAGGCTT-ATCTTTGCCGGAAAACAACTCGAGGATG
1 GACAAGGAAGGGATCCCACCAGACCAGCAGAGG-TTGATATTTGCTGGAAAGCAGCTTGAGGATG
* * * ** *
60439026 GCCGAACTCTTGCCGACTACAATATCCAAAAGGAGTCCACCCTCCACCTAGTCCTTCGTCTAAGG
65 GCCGAACTCTTGCCGACTACAATATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGTCTCCGT
* * * * *
60439091 GGTGGCATGCAGATATTCGTGAAAACTCTTACTGGCAAGACCATCACCCTCGAGGTGGAAAGTTC
130 GGTGGCATGCAAATATTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAAGTGGAAAGTTC
* * * *
60439156 TGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGA
195 TGACACAATTGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGA
* * * * *
60439221 GGCTTATCTTTGCCGGTAAACAGCTTGAAGATGGCCGAACTCTTGCGGATTACAACATCCAGAAA
260 GGCTTATCTTTGCCGGCAAACAGCTCGAAGATGGCAGAACACTTGCAGATTACAACATCCAGAAA
* * * * * *
60439286 GAGTCTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGGATGCAGATCTTTGTAAAAACCCTTAC
325 GAGTCTACCCTCCACCTTGTCCTCCGACTTAGAGGAGGGATGCAGATATTCGTAAAAACCCTTAC
* * * * * * * * *
60439351 TGGTAAGACCATCACCCTTGAGGTGGAGAGCTCCGATACTATCGATAATGTCAAGGCCAAGATCC
390 CGGTAAAACCATCACCCTGGAGGTCGAGAGCTCCGACACCATCGACAATGTCAAAGCCAAAATCC
*
60439416 AAGACAAGGAAGGGATTCCACCAGATCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGAT
455 AAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGAT
* * * * *
60439481 GGTAGGACACTTGCAGATTACAACATCCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTAG
520 GGGAGGACACTTGCAGACTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAG
* * * * * * *
60439546 GGGTGGGATGCAGATTTTTGTAAAAACCCTCACCGGAAAAACTATTACATTGGAGGTGGAGAGTT
585 AGGAGGGATGCAGATATTCGTAAAAACCCTCACCGGAAAAACAATCACACTGGAGGTGGAGAGTT
* * * * * *
60439611 CTGATACGATTGATAATGTTAAGGCCAAGATTCAG
650 CAGACACGATCGACAATGTGAAAGCCAAGATTCAG
* * * *
60439646 GATAAGGAAGGGATCCCACCGGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGG
1 GACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATATTTGCTGGAAAGCAGCTTGAGGATGG
* * * * * * *
60439711 CCGAACTCTTGCGGACTATAACATTCAGAAGGAATCGACCCTCCAT-TTGGT-GTTACGTCTCCG
66 CCGAACTCTTGCCGACTACAATATCCAGAAGGAGTCCACCCTCCATCTT-GTCCTT-CGTCTCCG
* * * * * ** * * *
60439774 TGGTGGCATGCAAATTTTTGTGAAGACTCTCACCGGAAAGACTATTACTTTGGAAGTTGAGAGTT
129 TGGTGGCATGCAAATATTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAAGTGGAAAGTT
** * * * * *
60439839 CTGACACCGTTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAGCAG
194 CTGACACAATTGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAG
* * * * * *
60439904 AGG-TTGATTTTTGCTGGCAAACAGCTCGAAGATGGTAGGACACTTGCAGATTATAATATCCAGA
259 AGGCTT-ATCTTTGCCGGCAAACAGCTCGAAGATGGCAGAACACTTGCAGATTACAACATCCAGA
* * * *
60439968 AAGAGTCTACCCTCCA-CTTGGTGCTCCGACTTCGAGGAGGGATGCAGATATTCGTGAAGA-CCT
323 AAGAGTCTACCCTCCACCTT-GTCCTCCGACTTAGAGGAGGGATGCAGATATTCGTAAAAACCCT
* * *
60440031 TGACCGGTAAAACCATCACCCTGGAGGTCGAGAGCTCGGACACCATTGACAATGTCAAAGCGAAA
387 T-ACCGGTAAAACCATCACCCTGGAGGTCGAGAGCTCCGACACCATCGACAATGTCAAAGCCAAA
* * * * * * *
60440096 ATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTGATTTTTGCCGGAAAGCAGCTTGA
451 ATCCAAGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGA
* * * * *
60440161 GGATGGGAGGACACTTGCAGACTATAACATCCA-AAAGGAATCGACCCTGCA-TTTGGT-TTTAC
516 AGATGGGAGGACACTTGCAGACTACAACATCCAGAAA-GAATCGACCCTCCACCTT-GTCCTT-C
* * * * * * *
60440223 GACTTCGAGGAGGGATGCAGATATTCGTGAAGACCTTGACCGGGAAAACAATCACCCTGGAGGTG
578 GACTTAGAGGAGGGATGCAGATATTCGTAAAAACCCTCACCGGAAAAACAATCACACTGGAGGTG
*
60440288 GAGAGTTCAGACACGATCGACAATGTGAAAGCGAAGATTCAG
643 GAGAGTTCAGACACGATCGACAATGTGAAAGCCAAGATTCAG
* * *
60440330 GACAAGGAGGGGATTCCACCAGACCAGCAGAGGTTGATATTTGCTGGGAAGCAG-TTGGAGGATG
1 GACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATATTTGCTGGAAAGCAGCTT-GAGGATG
* * * * * *
60440394 GTCGAACTCTAGCTGACTACAATATCCAGAAGGAGTCCACACTGCATCTTGTCCTTCGCCTCCGT
65 GCCGAACTCTTGCCGACTACAATATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGTCTCCGT
60440459 GGTGG
130 GGTGG
60440464 TTTCTAATCG
Statistics
Matches: 665, Mismatches: 141, Indels: 24
0.80 0.17 0.03
Matches are distributed among these distances:
683 23 0.03
684 638 0.96
685 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (684 bp):
GACAAGGAAGGGATCCCACCAGACCAGCAGAGGTTGATATTTGCTGGAAAGCAGCTTGAGGATGG
CCGAACTCTTGCCGACTACAATATCCAGAAGGAGTCCACCCTCCATCTTGTCCTTCGTCTCCGTG
GTGGCATGCAAATATTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAAGTGGAAAGTTCT
GACACAATTGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAG
GCTTATCTTTGCCGGCAAACAGCTCGAAGATGGCAGAACACTTGCAGATTACAACATCCAGAAAG
AGTCTACCCTCCACCTTGTCCTCCGACTTAGAGGAGGGATGCAGATATTCGTAAAAACCCTTACC
GGTAAAACCATCACCCTGGAGGTCGAGAGCTCCGACACCATCGACAATGTCAAAGCCAAAATCCA
AGACAAGGAAGGGATTCCACCAGACCAGCAGAGGTTGATTTTTGCCGGAAAACAACTCGAAGATG
GGAGGACACTTGCAGACTACAACATCCAGAAAGAATCGACCCTCCACCTTGTCCTTCGACTTAGA
GGAGGGATGCAGATATTCGTAAAAACCCTCACCGGAAAAACAATCACACTGGAGGTGGAGAGTTC
AGACACGATCGACAATGTGAAAGCCAAGATTCAG
Found at i:60442760 original size:6 final size:6
Alignment explanation
Indices: 60442749--60442779 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
60442739 AGTGATTTAT
60442749 TATAAA TATAAA TATAAA TATAAA TATAAA T
1 TATAAA TATAAA TATAAA TATAAA TATAAA T
60442780 TATATTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
TATAAA
Found at i:60446737 original size:18 final size:19
Alignment explanation
Indices: 60446701--60446744 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
60446691 CTTTAGATTC
*
60446701 TTTTAAAAAAATTATAATA
1 TTTTAAAAAAATTAAAATA
*
60446720 TTTTAAAAATA-TAAAATA
1 TTTTAAAAAAATTAAAATA
*
60446738 TTATAAA
1 TTTTAAA
60446745 TATTTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TTTTAAAAAAATTAAAATA
Found at i:60447593 original size:40 final size:39
Alignment explanation
Indices: 60447533--60447639 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 39
60447523 AAAAATGCCG
* *
60447533 CTAAAAATCAAGCATTAGCGGCGC-TTCTAATAAAACACCA
1 CTAAAAAT-GAGCATCAGCGGCGCTTTCTAA-AAAACACCA
* * * *
60447573 CTAAAGATAGAGTATCAGCGGCGCTTTTTAAAAAACGCCA
1 CTAAAAAT-GAGCATCAGCGGCGCTTTCTAAAAAACACCA
* *
60447613 CTAAAAATGAGCATTAGCGGCGTTTTC
1 CTAAAAATGAGCATCAGCGGCGCTTTC
60447640 CACAAAGCGC
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
39 15 0.28
40 34 0.63
41 5 0.09
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.23
Consensus pattern (39 bp):
CTAAAAATGAGCATCAGCGGCGCTTTCTAAAAAACACCA
Found at i:60447762 original size:41 final size:41
Alignment explanation
Indices: 60447694--60448022 Score: 396
Period size: 41 Copynumber: 8.0 Consensus size: 41
60447684 GAGTTTTTGG
* * * * *
60447694 GGGCATTAGCGGCCTTTTTTAAAAAGCGCCGCTAGTGCTAA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * * *
60447735 GGGCTTTAGCGGTGTTTTTGAAGAAGCGCCGTTAAAGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * * **
60447776 GGTCTTTAGCGGCATTTTTGAAGAAGCGAAGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
60447817 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
*
60447858 GGGCTTTAGCGGCGTTTCTT-AAAAAGCGCCGCTAATTCTCA
1 GGGCTTTAGCGGCGTTT-TTGAAAAAGCGCCGCTAATGCTCA
**
60447899 GTTCTTTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTCTA
1 GGGCTTTAGCGGCGTTTTTGAAA-AAGCGCCGCTAATGCTC-A
* *
60447941 --TCTTTAGCGGCGTTTATGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
* * *
60447980 GGGCTTTAGCGGCGTTTTTTGGAGAAGCGCAGCTAATGCTCA
1 GGGCTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCA
60448022 G
1 G
60448023 ATTTATCATA
Statistics
Matches: 250, Mismatches: 31, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.00
40 38 0.15
41 184 0.74
42 27 0.11
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCA
Found at i:60449818 original size:17 final size:17
Alignment explanation
Indices: 60449793--60449832 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
60449783 TCACTGCACT
* *
60449793 GAAACCCTAGATGAGAA
1 GAAATCCTAGATAAGAA
60449810 GAAATCCTAGATAAGAA
1 GAAATCCTAGATAAGAA
60449827 GAAATC
1 GAAATC
60449833 GGAGGAGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.50, C:0.15, G:0.20, T:0.15
Consensus pattern (17 bp):
GAAATCCTAGATAAGAA
Found at i:60451877 original size:23 final size:23
Alignment explanation
Indices: 60451851--60452429 Score: 321
Period size: 23 Copynumber: 25.3 Consensus size: 23
60451841 TTAATTGATA
*
60451851 TGTTTAAGTGCTGCAAATTTCAG
1 TGTTTAAGTGCTGCAAATTTAAG
* * *
60451874 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
*
60451897 TGTTTAAGTGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
*
60451920 TGTTTAAGTGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* * *
60451943 TGCTT-AGTTGCTGGAAA-TTGAG
1 TGTTTAAG-TGCTGCAAATTTAAG
* * * *
60451965 ATGTTTTA-TCGCTG-TAATTGAGG
1 -TGTTTAAGT-GCTGCAAATTTAAG
* * * ** * *
60451988 TGTATAAATGTTGTTAGTTGATA-
1 TGTTTAAGTGCTGCAAATTTA-AG
60452011 TGTTTAAGTGCTGCAAATTTAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* * *
60452034 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452057 TTTTTAAGTGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452080 TGTTTAAGTGTTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452103 TGCTT-AGTTGCTGCAAA-TTGAG
1 TGTTTAAG-TGCTGCAAATTTAAG
* * * *
60452125 ATGTTTTA-TCGCTG-TAATTGAGG
1 -TGTTTAAGT-GCTGCAAATTTAAG
* * * ** *
60452148 TGTATAAATGTTGTTAATTGATA-
1 TGTTTAAGTGCTGCAAATTTA-AG
60452171 TGTTTAAGTGCTGCAAATTTAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452194 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
*
60452217 TGTTTAAGTGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452240 TGCTT-AGTTGCTAG-AAA-TTGAG
1 TGTTTAAG-TGCT-GCAAATTTAAG
* * * *
60452262 ATGTTTTA-TCGCTG-TAATTGAGG
1 -TGTTTAAGT-GCTGCAAATTTAAG
* * * * ** *
60452285 TCTATAAATGTTGTTAATTGATA-
1 TGTTTAAGTGCTGCAAATTTA-AG
60452308 TGTTTAAGTGCTGCAAATTTAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* * * *
60452331 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
*
60452354 TGTTTAAGTGCTGCAAATTGAAG
1 TGTTTAAGTGCTGCAAATTTAAG
* *
60452377 TGTTT-AGTTGCTG-AAAATTGAG
1 TGTTTAAG-TGCTGCAAATTTAAG
* *
60452399 ATGTTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAGTGCTGCAAATTTAAG
60452423 TGTTTAA
1 TGTTTAA
60452430 ATTTAACTTG
Statistics
Matches: 432, Mismatches: 92, Indels: 64
0.73 0.16 0.11
Matches are distributed among these distances:
22 59 0.14
23 361 0.84
24 12 0.03
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.40
Consensus pattern (23 bp):
TGTTTAAGTGCTGCAAATTTAAG
Found at i:60452189 original size:137 final size:136
Alignment explanation
Indices: 60451873--60452403 Score: 633
Period size: 137 Copynumber: 3.9 Consensus size: 136
60451863 GCAAATTTCA
* *
60451873 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAAT
1 GTGTATAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
* * * * * * ** *
60451938 TGAAGTGCTT-AGTTGCTGGAAATTG-AGATGTTTTA-TCGCTGTAATTGAGGTGTATAAAT-GT
66 TGAAGTGTTTAAG-TGCTGCAAATTGAAG-TG-CTTAGTTGCTGAAATTGAGATGT-TTTATCGC
* *
60451999 TGTTAGTTGAT
127 TG-TAATTGAG
* * * * * * * * *
60452010 ATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTTTTTAAGTGCTGCAAAT
1 GTGTATAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
*
60452075 TGAAGTGTTTAAGTGTTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGAGATGTTTTATCGCTGT
66 TGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTG-AAATTGAGATGTTTTATCGCTGT
60452140 AATTGAG
130 AATTGAG
* * *
60452147 GTGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAA
1 GTGTATAAATGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGCAAA
60452211 TTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTAGAAATTGAGATGTTTTATCGCTG
65 TTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCT-GAAATTGAGATGTTTTATCGCTG
60452276 TAATTGAG
129 TAATTGAG
* * * * * *
60452284 GTCTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGTTGTAAA
1 GTGTATAAATGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGCAAA
*
60452348 TTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTGCTGAAAATTGAGATGTT
65 TTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTG-AAATTGAGATGTT
60452404 AAAGTGCTGC
Statistics
Matches: 350, Mismatches: 36, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
136 4 0.01
137 327 0.93
138 19 0.05
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (136 bp):
GTGTATAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
TGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGAAATTGAGATGTTTTATCGCTGTA
ATTGAG
Found at i:60452260 original size:160 final size:160
Alignment explanation
Indices: 60451834--60452241 Score: 762
Period size: 160 Copynumber: 2.5 Consensus size: 160
60451824 AGCAGCATCG
*
60451834 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTCAGTGTTTAAATGCTGTAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTG
*
60451899 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGA
60451964 GATGTTTTATCGCTGTAATTGAGGTGTATA
131 GATGTTTTATCGCTGTAATTGAGGTGTATA
* *
60451994 AATGTTGTTAGTTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTT
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTG
*
60452059 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGTTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGA
60452124 GATGTTTTATCGCTGTAATTGAGGTGTATA
131 GATGTTTTATCGCTGTAATTGAGGTGTATA
*
60452154 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTG
60452219 TTTAAGTGCTGCAAATTGAAGTG
66 TTTAAGTGCTGCAAATTGAAGTG
60452242 CTTAGTTGCT
Statistics
Matches: 240, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
160 240 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (160 bp):
AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTG
TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGA
GATGTTTTATCGCTGTAATTGAGGTGTATA
Found at i:60452305 original size:160 final size:159
Alignment explanation
Indices: 60451834--60452424 Score: 757
Period size: 160 Copynumber: 3.7 Consensus size: 159
60451824 AGCAGCATCG
* *
60451834 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTCAGTGTTTAAATGCTGTAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
60451899 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGGAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCT-GAAATTGA
60451964 GATGTTTTATCGCTGTAATTGAGGTGTATA
130 GATGTTTTATCGCTGTAATTGAGGTGTATA
* * *
60451994 AATGTTGTTAGTTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTT
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
*
60452059 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGTTGCAAATTGAAGTGCTTAGTTGCTGCAAATTGA
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTG-AAATTGA
60452124 GATGTTTTATCGCTGTAATTGAGGTGTATA
130 GATGTTTTATCGCTGTAATTGAGGTGTATA
60452154 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
1 AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
* * * *
60452219 TTTAAGTGCTGCAAATTGAAGTGCTT-AGTTGCTAG-AAATTG-AGATGTTTTA-TCGCTGTAAT
66 TTTAAGTGCTGCAAATTGAAGTGTTTAAG-TGCT-GCAAATTGAAG-TG-CTTAGTTGCTGAAAT
* * ** * ** *
60452280 TGAGGTCTATAAAT-GTTGTTAATTGATATGTTTA
127 TGAGATGT-TTTATCGCTG-TAATTGAGGTGTATA
* * ** * * * * * *
60452314 AGTGCTGCAAATTTA-AGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGT
1 AATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGT
* *
60452378 GTTT-AGTTGCTGAAAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTG
65 GTTTAAG-TGCTGCAAATTGAAG-TGTTTAAGTGCTGCAAATTGAAGTG
60452425 TTTAAATTTA
Statistics
Matches: 385, Mismatches: 33, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
159 23 0.06
160 354 0.92
161 8 0.02
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.40
Consensus pattern (159 bp):
AATGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTG
TTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGCTTAGTTGCTGAAATTGAG
ATGTTTTATCGCTGTAATTGAGGTGTATA
Found at i:60453089 original size:43 final size:43
Alignment explanation
Indices: 60453035--60453297 Score: 373
Period size: 43 Copynumber: 6.1 Consensus size: 43
60453025 TTTTCGTGAC
* * * *
60453035 CTTTAGTGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTTCTGGT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
* **
60453078 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTAAT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
* * *
60453121 CTTTAGCGGCGTTTGTGGGAAAAGCGACGCTAAAGGTCTTGGT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
* * *
60453164 CTTTAGCGGCGTTTGTGGGTAAAACGCCACTAAAGGTTCTGGT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
*
60453207 CTTTAGCGGTGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
* * *
60453250 CTTTAGCGACTTTTGTGGGTAAAGCGCCGCTAAAGGTCCTAGT
1 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
60453293 CTTTA
1 CTTTA
60453298 TCTGCTTTGG
Statistics
Matches: 196, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 196 1.00
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.30
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGGTCCTGGT
Found at i:60457879 original size:10 final size:10
Alignment explanation
Indices: 60457866--60457900 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
60457856 GGGTGGTTGA
*
60457866 GTGTGGTGTG
1 GTGTGGTGCG
60457876 GTGTGGTGCG
1 GTGTGGTGCG
*
60457886 GTGCGGTGCG
1 GTGTGGTGCG
60457896 GTGTG
1 GTGTG
60457901 TTTAGTTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.09, G:0.60, T:0.31
Consensus pattern (10 bp):
GTGTGGTGCG
Found at i:60458663 original size:14 final size:14
Alignment explanation
Indices: 60458646--60458713 Score: 50
Period size: 14 Copynumber: 4.8 Consensus size: 14
60458636 AAGAAATAAT
*
60458646 AATATATAAATTTA
1 AATATATAAATATA
*
60458660 AATATATATATATA
1 AATATATAAATATA
* *
60458674 AATAGACAAATATTTTA
1 AATATATAAATA---TA
*
60458691 AATATATATATAT-
1 AATATATAAATATA
60458704 AATA-ATAAAT
1 AATATATAAAT
60458714 GTATCAGGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
12 5 0.12
13 4 0.10
14 22 0.52
17 11 0.26
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (14 bp):
AATATATAAATATA
Found at i:60461683 original size:2 final size:2
Alignment explanation
Indices: 60461672--60461700 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
60461662 TTCTTAATGT
60461672 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60461701 AAAGCCTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Done.