Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 195 of 208
Found at i:60708590 original size:22 final size:22
Alignment explanation
Indices: 60708565--60708607 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
60708555 ATCGATATTA
*
60708565 TAATATTTTAATTATTTATTTT
1 TAATATTTTAATAATTTATTTT
*
60708587 TAATTTTTTAATAATTTATTT
1 TAATATTTTAATAATTTATTT
60708608 ACTTTAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TAATATTTTAATAATTTATTTT
Found at i:60709244 original size:28 final size:27
Alignment explanation
Indices: 60709212--60709284 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
60709202 CTAAACCCTT
60709212 AAACCATAAATCCTAAACTATAAAACTC
1 AAACCAT-AATCCTAAACTATAAAACTC
* * *
60709240 AAACCCTGAA-CTCTAAACTATAAACCTT
1 AAACCAT-AATC-CTAAACTATAAAACTC
*
60709268 TAACCATAATCCTAAAC
1 AAACCATAATCCTAAAC
60709285 CATATCTTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
27 9 0.24
28 28 0.76
ACGTcount: A:0.48, C:0.27, G:0.01, T:0.23
Consensus pattern (27 bp):
AAACCATAATCCTAAACTATAAAACTC
Found at i:60716960 original size:13 final size:13
Alignment explanation
Indices: 60716942--60716969 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60716932 GAATCATAAA
60716942 ATATAAAATACAT
1 ATATAAAATACAT
60716955 ATATAAAATACAT
1 ATATAAAATACAT
60716968 AT
1 AT
60716970 TTTAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (13 bp):
ATATAAAATACAT
Found at i:60717149 original size:17 final size:17
Alignment explanation
Indices: 60717123--60717157 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
60717113 AAAAGTATGT
60717123 ATATAAGTATATATATA
1 ATATAAGTATATATATA
*
60717140 ATATACGTATATATATA
1 ATATAAGTATATATATA
60717157 A
1 A
60717158 GCAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (17 bp):
ATATAAGTATATATATA
Found at i:60718795 original size:132 final size:132
Alignment explanation
Indices: 60718602--60718989 Score: 593
Period size: 132 Copynumber: 2.9 Consensus size: 132
60718592 GGTTTGTGGT
* * * * *
60718602 TTAAATTTACTTC-CCTACTACCTTAGGAAGATAAGATTCACCATATTTGATCTGTTCCACTACT
1 TTAAATCTACTTCTCC-ACTATCTTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * * *
60718666 GCTTAGGGAGACAGAATTTGCAATCTTCAACCTACTCCATTGCTGCTTAGGGAGATAGGGCTAAT
65 GCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
60718731 GGC
130 GGC
* *
60718734 TTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTC-CCGACCTTCAATCTGCTCCACTACT
1 TTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCACC-ATCTTCGATCTGCTCCACTACT
60718798 GCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
65 GCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAAT
60718863 GGC
130 GGC
*
60718866 TTAAATCTACTTCTCCACTATCTT-GAGAAGATAAGATTCATCATCTTCGATCTGCTCCACTACT
1 TTAAATCTACTTCTCCACTATCTTAG-GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT
* * *
60718930 ACTTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA
65 GCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA
60718990 TCTGCAATCT
Statistics
Matches: 235, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
131 3 0.01
132 229 0.97
133 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (132 bp):
TTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
CTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATG
GC
Found at i:60718803 original size:44 final size:45
Alignment explanation
Indices: 60718746--60719297 Score: 234
Period size: 44 Copynumber: 12.6 Consensus size: 45
60718736 AAATCTACTT
* * * * *
60718746 CTCCACTA-T-CTTAGGAAGATAAGATTC-CCGACCTTCAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
* * *
60718788 CTCCACTACTGCTTAGGGAGA-CAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
* * * *
60718832 CTCCACTACTGCTTAGGGAGAT-AGGA-CT--AATGGCTTAAATCTACTT
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAA--CCTTCAA-C--CTA
* * * * * *
60718878 CTCCACTA-T-CTT-GAGAAGATAAGATTCAT-C-ATCTTCGATCTG
1 CTCCACTACTGCTTAG-GGAGATAAGAATC-TCCAACCTTCAACCTA
* * * * * *
60718920 CTCCACTACTACTTAAGGTGA-CAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
* * *
60718964 CTCCACTACTGCTTAGGGAGAT-AGGATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
* * *
60719008 CTCCACTACTGCTTAGGGAGAT-AGGA-CT--AACGGCTTAAATCTACTT
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAAC--CTTCAA-C--CTA
* * * * *
60719054 CTCCATTA-T-CTT-GGGAAGATAAGATTCACC-ATCTTCAATCTA
1 CTCCACTACTGCTTAGGG-AGATAAGAATCTCCAACCTTCAACCTA
* * * *
60719096 TTCCACTACTGCTTAGGGAGA-CAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
* * *
60719140 CTCCACTACTGCTTAGGGAGATAAG-A-CT--AATGGCTTAAATCTACTT
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAA--CCTTCAA-C--CTA
* * * * * *
60719186 CTCCACTA-T-CTT-GGGAAGATAAGATTCACC-ATCTTCGATCTG
1 CTCCACTACTGCTTAGGG-AGATAAGAATCTCCAACCTTCAACCTA
* * * *
60719228 CTCCACTATTGCTTAGGGTGAT-AGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
60719272 CTCCACTACTGCTTAGGGAGATAAGA
1 CTCCACTACTGCTTAGGGAGATAAGA
60719298 CTAACGGCTT
Statistics
Matches: 389, Mismatches: 71, Indels: 97
0.70 0.13 0.17
Matches are distributed among these distances:
41 6 0.02
42 37 0.10
43 55 0.14
44 224 0.58
45 31 0.08
46 32 0.08
47 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (45 bp):
CTCCACTACTGCTTAGGGAGATAAGAATCTCCAACCTTCAACCTA
Found at i:60719030 original size:132 final size:132
Alignment explanation
Indices: 60718623--60719316 Score: 467
Period size: 132 Copynumber: 5.3 Consensus size: 132
60718613 TCCCTACTAC
** ** * * * * *
60718623 CTTAGGAAGATAAGATTCACCATATTTGATCTGTTCCACTACTGCTTAGGGAGACAGAATTTGCA
1 CTTAGGAAGATAAGATTCACCAGCTTAAATCTGCTCCACTACTACTTAAGGTGACAGAATCTGCA
* * * * *
60718688 ATCTTCAACCTACTCCATTGCTGCTTAGGGAGATAGG-GCT--AATGGCTTAAATCTACTTCTCC
66 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAAT--CTTCAA-C--CTACTCC
60718750 ACTA-T-
126 ACTACTG
* * * * *
60718755 CTTAGGAAGATAAGATTC-CCGACCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGC
1 CTTAGGAAGATAAGATTCACC-AGCTTAAATCTGCTCCACTACTACTTAAGGTGACAGAATCTGC
* *
60718819 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT--AATGGCTTAAATCTACTTCTC
65 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAAT--CTTCAA-C--CTACTC
60718881 CACTA-T-
125 CACTACTG
* * **
60718887 CTT-GAGAAGATAAGATTCATCATCTTCGATCTGCTCCACTACTACTTAAGGTGACAGAATCTGC
1 CTTAG-GAAGATAAGATTCACCAGCTTAAATCTGCTCCACTACTACTTAAGGTGACAGAATCTGC
60718951 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTA
65 AATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTA
60719016 CTG
130 CTG
* * * * * * * * * * * *
60719019 CTTAGGGAGATAGGACT-AACGGCTTAAATCTACTTCTCCATTATCTTGGGAAGAT-A-AGATTC
1 CTTAGGAAGATAAGATTCACCAGCTTAAATCTGCTCCACTACTA-CTT---AAGGTGACAGAATC
* * * * * *
60719081 -ACCATCTTCAATCTATTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCA
62 TGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCA
60719145 CTACTG
127 CTACTG
* * *** * * * * * *
60719151 CTTAGGGAGATAAGACT-AATGGCTTAAATCTACTTCTCCACTATCTTGGGAAGAT-A-AGATTC
1 CTTAGGAAGATAAGATTCACCAGCTTAAATCTGCTCCACTACTA-CTT---AAGGTGACAGAATC
* * * * * * * *
60719213 -ACCATCTTCGATCTGCTCCACTATTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCA
62 TGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCA
60719277 CTACTG
127 CTACTG
* * * *
60719283 CTTAGGGAGATAAGACT-AACGGCTTAAATCTGCT
1 CTTAGGAAGATAAGATTCACCAGCTTAAATCTGCT
60719317 TCTCCACTAT
Statistics
Matches: 500, Mismatches: 48, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
130 10 0.02
131 20 0.04
132 448 0.90
133 14 0.03
134 1 0.00
135 7 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (132 bp):
CTTAGGAAGATAAGATTCACCAGCTTAAATCTGCTCCACTACTACTTAAGGTGACAGAATCTGCA
ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTAC
TG
Found at i:60719161 original size:176 final size:176
Alignment explanation
Indices: 60718778--60719162 Score: 644
Period size: 176 Copynumber: 2.2 Consensus size: 176
60718768 GATTCCCGAC
* * *
60718778 CTTCAATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTG
1 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
60718843 CTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCATC
66 CTTAGGGAGATAGGACTAACGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACC
* * *
60718908 ATCTTCGATCTGCTCCACTACTACTTAAGGTGACAGAATCTGCAAT
131 ATCTTCAATCTACTCCACTACTACTTAAGGAGACAGAATCTGCAAT
*
60718954 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTACTG
1 CTTCAACCTACTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTG
* *
60719019 CTTAGGGAGATAGGACTAACGGCTTAAATCTACTTCTCCATTATCTTGGGAAGATAAGATTCACC
66 CTTAGGGAGATAGGACTAACGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACC
* * *
60719084 ATCTTCAATCTATTCCACTACTGCTTAGGGAGACAGAATCTGCAAT
131 ATCTTCAATCTACTCCACTACTACTTAAGGAGACAGAATCTGCAAT
60719130 CTTCAACCTACTCCACTACTGCTTAGGGAGATA
1 CTTCAACCTACTCCACTACTGCTTAGGGAGATA
60719163 AGACTAATGG
Statistics
Matches: 195, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
176 195 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (176 bp):
CTTCAACCTACTCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTG
CTTAGGGAGATAGGACTAACGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACC
ATCTTCAATCTACTCCACTACTACTTAAGGAGACAGAATCTGCAAT
Found at i:60719221 original size:308 final size:308
Alignment explanation
Indices: 60718657--60719294 Score: 1089
Period size: 308 Copynumber: 2.1 Consensus size: 308
60718647 TTTGATCTGT
* * * *
60718657 TCCACTACTGCTTAGGGAGACAGAATTTGCAATCTTCAACCTACTCCATTGCTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGAT
* *
60718722 AGGGCTAATGGCTTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCCCGACCTTCAATCT
66 AGGACTAACGGCTTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCCCGACCTTCAATCT
*
60718787 GCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
131 ACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
* *
60718852 ATAGGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCATCATCTTCGAT
196 ATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGAT
60718917 CTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
261 CTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
*
60718965 TCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGAT
* * *
60719030 AGGACTAACGGCTTAAATCTACTTCTCCATTATCTTGGGAAGATAAGATTCACC-ATCTTCAATC
66 AGGACTAACGGCTTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTC-CCGACCTTCAATC
*
60719094 TATTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
130 TACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
*
60719159 GATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGA
195 GATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGA
* * * *
60719224 TCTGCTCCACTATTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTAC
260 TCTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
60719273 TCCACTACTGCTTAGGGAGATA
1 TCCACTACTGCTTAGGGAGATA
60719295 AGACTAACGG
Statistics
Matches: 310, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
308 308 0.99
309 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (308 bp):
TCCACTACTGCTTAGGGAGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGAT
AGGACTAACGGCTTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCCCGACCTTCAATCT
ACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
ATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGAT
CTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
Found at i:60719319 original size:132 final size:132
Alignment explanation
Indices: 60718964--60719788 Score: 1257
Period size: 132 Copynumber: 6.3 Consensus size: 132
60718954 CTTCAACCTA
* *
60718964 CTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
* * *
60719029 TAGGACTAACGGCTTAAATCTACTTCTCCATTATCTTGGGAAGATAAGATTCACCATCTTCAATC
66 TAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
*
60719094 TA
131 TG
*
60719096 TTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
* * *
60719161 TAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
60719226 TG
131 TG
* * *
60719228 CTCCACTATTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
*
60719293 TAAGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
66 TAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
60719358 TG
131 TG
* * * * *
60719360 CTCCACTACTGCTTAGGG-GAACATAATATGCAATATTCGACCTACTCCACTATTGCTTAGGGAG
1 CTCCACTACTGCTTAGGGAG-ACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
* * * *
60719424 ATAGGACTAATGGCTTAAATTTGCTTCACCACTGTCTTGGGAAGATAAGATTCACCATCTTCGAT
65 ATAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGAT
60719489 CTG
130 CTG
* * * *
60719492 CTCCACTACTGCTTAGGGGGACAGAATATGCAATCTTCGACCTACT-TACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
*
60719556 TAGGACT-ACTGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGCT
66 TAGGACTAAC-GGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGAT
60719620 CTG
130 CTG
* * *
60719623 CTCCACTACTGCTTAGGGGGACAGAATATGCAATCTTCGACCTACTCCACTA---CTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
* * * *
60719685 TAGGACTAATGGCTTAAATCTCCTTCTCCACTATCTTAGGAAGATAAGATTCACCACCTTCGATC
66 TAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
60719750 TG
131 TG
* *
60719752 CTCCACTACTGCTTAGGGTGAAAGAATCTGCAATCTT
1 CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTT
60719789 TGATCTACTT
Statistics
Matches: 644, Mismatches: 44, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
129 104 0.16
130 2 0.00
131 123 0.19
132 414 0.64
133 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGA
TAGGACTAACGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGATC
TG
Found at i:60719411 original size:308 final size:305
Alignment explanation
Indices: 60718657--60719424 Score: 888
Period size: 308 Copynumber: 2.5 Consensus size: 305
60718647 TTTGATCTGT
* * * * * *
60718657 TCCACTACTGCTTAGGGAGA-CAGAATTTGCAATCTTCAACCTACTCCATTGCTGCTTAGGGAGA
1 TCCACTACTGCTTAGGGAGATAAG-ATCT-CAAGCTTAAACCTACTCCACTACTGCTTAGGGAGA
* * ** * * * * * ** *
60718721 TAGGGCTAATGGCTTAAATCTACTTCTCCACTATCTTAGGAAGATAAGATTCCCGACCTTCAATC
64 TAAGACTAACAGCTTAAA-CTACTGCTCCACTATCTTGGGAACATAAGATGCAC-ATATTCAACC
*
60718786 TGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
127 TACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGA
* *
60718851 GATAGGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCATCATCTTCGA
192 GATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGA
60718916 TCTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
257 TCTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
* * *
60718965 TCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGATAAGATCT-CAAGCTTAAACCTACTCCACTACTGCTTAGGGAGAT
* * * * * * * *
60719030 AGGACTAACGGCTTAAATCTACTTCTCCATTATCTTGGGAAGATAAGATTCACCATCTTCAATCT
65 AAGACTAACAGCTTAAA-CTACTGCTCCACTATCTTGGGAACATAAGATGCA-CATATTCAACCT
*
60719095 ATTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
128 ACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAG
*
60719160 ATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGGGAAGATAAGATTCACCATCTTCGAT
193 ATAAGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGAT
* * * *
60719225 CTGCTCCACTATTGCTTAGGGTGATAGAATCTGCAATCTTCAACCTAC
258 CTGCTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
*
60719273 TCCACTACTGCTTAGGGAGATAAGA-CT-AACGGCTTAAATCTGCTTCTCCACTA-T-CTT-GGG
1 TCCACTACTGCTTAGGGAGATAAGATCTCAA--GCTTAAA-C--CTACTCCACTACTGCTTAGGG
* * * ** *
60719333 AAGATAAGATTCACCATCTTCGA-T-CTGCTCCACTACTGCTTAGGGGAACATAATATGCA-ATA
61 -AGATAAGACT-AACAGCTTAAACTACTGCTCCACTA-T-CTT--GGGAACATAAGATGCACATA
* *
60719395 TTCGACCTACTCCACTATTGCTTAGGGAGA
120 TTCAACCTACTCCACTACTGCTTAGGGAGA
60719425 TAGGACTAAT
Statistics
Matches: 406, Mismatches: 41, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
305 2 0.00
306 9 0.02
307 12 0.03
308 351 0.86
309 9 0.02
310 23 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (305 bp):
TCCACTACTGCTTAGGGAGATAAGATCTCAAGCTTAAACCTACTCCACTACTGCTTAGGGAGATA
AGACTAACAGCTTAAACTACTGCTCCACTATCTTGGGAACATAAGATGCACATATTCAACCTACT
CCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATA
AGACTAATGGCTTAAATCTACTTCTCCACTATCTTGAGAAGATAAGATTCACCATCTTCGATCTG
CTCCACTACTACTTAAGGTGACAGAATCTGCAATCTTCAACCTAC
Found at i:60719496 original size:88 final size:87
Alignment explanation
Indices: 60718964--60719509 Score: 248
Period size: 88 Copynumber: 6.2 Consensus size: 87
60718954 CTTCAACCTA
* * * *
60718964 CTCCACTACTGCTTAGGGAGATAGGATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-AG
1 CTCCACTACTGCTTAGGGAGATAAGA-CT-CAATCTTAAATCTACTCCACCACTGCTTAGGGAAG
* * * ** ** *
60719028 ATAGGACT-AACGGCTTAAATCTACTT
64 ATAAGATTCACCATCTTCGA--T-CTG
* * * * *
60719054 CTCCATTA-T-CTT-GGGAAGATAAGATTCACCATCTTCAATCTATTCCACTACTGCTTAGGG-A
1 CTCCACTACTGCTTAGGG-AGATAAGACTCA--ATCTTAAATCTACTCCACCACTGCTTAGGGAA
* * * * * * *
60719115 GA-CAGAATCTGCAATCTTCAACCTA
63 GATAAGATTC-ACCATCTTCGATCTG
* * *
60719140 CTCCACTACTGCTTAGGGAGATAAGACT-AATGGCTTAAATCTACTTCTCCACTATCTT-GGGAA
1 CTCCACTACTGCTTAGGGAGATAAGACTCAAT--CTTAAATCTACTCCACCACT-GCTTAGGGAA
60719203 GATAAGATTCACCATCTTCGATCTG
63 GATAAGATTCACCATCTTCGATCTG
* * * * *
60719228 CTCCACTATTGCTTAGGGTGAT-AGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGG-A
1 CTCCACTACTGCTTAGGGAGATAAG-A-CT-CAATCTTAAATCTACTCCACCACTGCTTAGGGAA
* * ** **
60719291 GATAAGACT-AACGGCTTAAATCTG
63 GATAAGATTCACCATCTTCGATCTG
* ** * *
60719315 CTTCTCCACTA-T-CTT-GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGG
1 ---CTCCACTACTGCTTAGGG-AGATAAGACTCA--ATCTTAAATCTACTCCACCACTGCTTA-G
* * * * * *
60719377 GGAACATAATATGCA--ATATTCGACCTA
59 GGAAGATAAGATTCACCATCTTCGATCTG
* * * * *
60719404 CTCCACTATTGCTTAGGGAGATAGGACT-AATGGCTTAAATTTGCTTCACCACTGTCTT-GGGAA
1 CTCCACTACTGCTTAGGGAGATAAGACTCAAT--CTTAAATCTACTCCACCACTG-CTTAGGGAA
60719467 GATAAGATTCACCATCTTCGATCTG
63 GATAAGATTCACCATCTTCGATCTG
60719492 CTCCACTACTGCTTAGGG
1 CTCCACTACTGCTTAGGG
60719510 GGACAGAATA
Statistics
Matches: 345, Mismatches: 75, Indels: 74
0.70 0.15 0.15
Matches are distributed among these distances:
85 4 0.01
86 34 0.10
87 61 0.18
88 173 0.50
89 48 0.14
90 21 0.06
91 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (87 bp):
CTCCACTACTGCTTAGGGAGATAAGACTCAATCTTAAATCTACTCCACCACTGCTTAGGGAAGAT
AAGATTCACCATCTTCGATCTG
Found at i:60719671 original size:44 final size:44
Alignment explanation
Indices: 60719480--60719676 Score: 126
Period size: 44 Copynumber: 4.5 Consensus size: 44
60719470 AAGATTCACC
* *
60719480 ATCTTCGATCTGCTCCACTACTGCTTAGGGGGACAGAATATGCA
1 ATCTTCGACCTACTCCACTACTGCTTAGGGGGACAGAATATGCA
* * * *
60719524 ATCTTCGACCTACT-TACTACTGCTTAGGGAGATAGGACTACTGGCTTAA
1 ATCTTCGACCTACTCCACTACTGCTTAGGGGGACA-GAATA-T-GC---A
* * * * * *
60719573 ATC-T-G--CTTCTCCACTA-T-CTT--GGGAAGATAAGATTCA
1 ATCTTCGACCTACTCCACTACTGCTTAGGGGGACAGAATATGCA
*
60719609 CCATCTTCG-CTCTGCTCCACTACTGCTTAGGGGGACAGAATATGCA
1 --ATCTTCGAC-CTACTCCACTACTGCTTAGGGGGACAGAATATGCA
60719655 ATCTTCGACCTACTCCACTACT
1 ATCTTCGACCTACTCCACTACT
60719677 TAGGGAGATA
Statistics
Matches: 113, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
36 1 0.01
38 3 0.03
39 2 0.02
40 2 0.02
41 2 0.02
42 14 0.12
43 18 0.16
44 41 0.36
45 7 0.06
46 17 0.15
47 1 0.01
48 1 0.01
49 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTTCGACCTACTCCACTACTGCTTAGGGGGACAGAATATGCA
Found at i:60719834 original size:46 final size:46
Alignment explanation
Indices: 60719777--60720024 Score: 379
Period size: 46 Copynumber: 5.4 Consensus size: 46
60719767 GGGTGAAAGA
* * * *
60719777 ATCTGCAATCTTTGATCTACTTCGCTGTCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
* * *
60719823 ATCTGATATCTTCGATCTACTCCACTACCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
* *
60719869 ATCTGCTATCTTTGATCTACTCCGCTGCCAAATATAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
*
60719915 ATTTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
* *
60719961 ATCTGCTATCTTCGATCTACTCTGCTGTCAAATACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
*
60720007 ATTTGCTATCTTCGATCT
1 ATCTGCTATCTTCGATCT
60720025 GTTCTCTGGG
Statistics
Matches: 183, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 183 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (46 bp):
ATCTGCTATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAG
Found at i:60721237 original size:6 final size:6
Alignment explanation
Indices: 60721228--60721281 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
60721218 TTGACCTCTC
* * *
60721228 CTTTTT CTTTTTT CTTTTT CTTTTCT CTTCTT CTTTCT CTTCTT CTTTTT
1 CTTTTT C-TTTTT CTTTTT CTTTT-T CTTTTT CTTTTT CTTTTT CTTTTT
60721278 CTTT
1 CTTT
60721282 CTTTCCCCCC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 29 0.73
7 11 0.28
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:60725887 original size:6 final size:6
Alignment explanation
Indices: 60725876--60725915 Score: 62
Period size: 6 Copynumber: 6.3 Consensus size: 6
60725866 AATATGCAAA
60725876 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAAGT ATGTAT AT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGT-A-T ATGTAT AT
60725916 ACATATTCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 25 0.78
7 2 0.06
8 5 0.16
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.47
Consensus pattern (6 bp):
ATGTAT
Found at i:60728202 original size:61 final size:61
Alignment explanation
Indices: 60728127--60728243 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 61
60728117 TGCACCAGTG
* * *
60728127 TAGTTCGCCTGTGTGTCTCAAA-TTTCAACTCAGTCAGTTACACGGCCTGCCACACGCCGTA
1 TAGTTCGCCAGTGTGTCTCAAACTTT-AACTCAGTAAGTTACACGGCCTACCACACGCCGTA
* * *
60728188 TAGTTCGTCAGTGTGTTTCAAACTTTAACTCATTAAGTTACACGGCCTACCACACG
1 TAGTTCGCCAGTGTGTCTCAAACTTTAACTCAGTAAGTTACACGGCCTACCACACG
60728244 ACCCACCACA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
61 46 0.94
62 3 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (61 bp):
TAGTTCGCCAGTGTGTCTCAAACTTTAACTCAGTAAGTTACACGGCCTACCACACGCCGTA
Found at i:60731400 original size:45 final size:44
Alignment explanation
Indices: 60731334--60731539 Score: 188
Period size: 45 Copynumber: 4.6 Consensus size: 44
60731324 ACCTCAAAAT
60731334 TAATGCCATAGTATCTTTCAACTATGGTCTTGATCGTTACCGATG
1 TAATGCCATAGTATCTTTCAACTATGGTCTT-ATCGTTACCGATG
* * * *
60731379 TGATGCCATAGTATCTTTCAACTATGGTCTTAT-TTGTATCGAATT
1 TAATGCCATAGTATCTTTCAACTATGGTCTTATCGT-TACCG-ATG
* * * * *
60731424 TAATGCCATAATATCTTTCAATTATGGTCTTA-CATAGTCCCGATT
1 TAATGCCATAGTATCTTTCAACTATGGTCTTATCGT--TACCGATG
* * * *
60731469 TAGTTCCATACTATCTTTCAACTATGGTCTTATTCATT-CC-A-G
1 TAATGCCATAGTATCTTTCAACTATGGTCTTA-TCGTTACCGATG
60731511 TAAAATGCCATAGTATCTTTCAACTATGG
1 T--AATGCCATAGTATCTTTCAACTATGG
60731540 CCTTTCTCAT
Statistics
Matches: 135, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 31 0.23
45 94 0.70
46 4 0.03
47 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (44 bp):
TAATGCCATAGTATCTTTCAACTATGGTCTTATCGTTACCGATG
Found at i:60731486 original size:90 final size:90
Alignment explanation
Indices: 60731333--60731539 Score: 240
Period size: 90 Copynumber: 2.3 Consensus size: 90
60731323 GACCTCAAAA
* * * *
60731333 TTAATGCCATAGTATCTTTCAACTATGGTCTTGATCGTTACCGATGTGATGCCATAGTATCTTTC
1 TTAATGCCATAATATCTTTCAACTATGGTCTTCATAGTTACCGATGTGATGCCATACTATCTTTC
60731398 AACTATGGTCTTATTTGTATCGAAT
66 AACTATGGTCTTATTTGTATCGAAT
* * * *
60731423 TTAATGCCATAATATCTTTCAATTATGGTCTTACATAG-TCCCGAT-TTAGTTCCATACTATCTT
1 TTAATGCCATAATATCTTTCAACTATGGTCTT-CATAGTTACCGATGTGA-TGCCATACTATCTT
** * *
60731486 TCAACTATGGTCTTATTCAT-TCCAGT
64 TCAACTATGGTCTTATTTGTATCGAAT
** *
60731512 AAAATGCCATAGTATCTTTCAACTATGG
1 TTAATGCCATAATATCTTTCAACTATGG
60731540 CCTTTCTCAT
Statistics
Matches: 99, Mismatches: 16, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
89 30 0.30
90 66 0.67
91 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.41
Consensus pattern (90 bp):
TTAATGCCATAATATCTTTCAACTATGGTCTTCATAGTTACCGATGTGATGCCATACTATCTTTC
AACTATGGTCTTATTTGTATCGAAT
Found at i:60735197 original size:49 final size:49
Alignment explanation
Indices: 60735142--60735299 Score: 145
Period size: 49 Copynumber: 3.2 Consensus size: 49
60735132 TACGTTATGG
* ** ** *
60735142 ATGAACCATTGGTTGTTGCAGATAAACTATTGACTGAAATATGTTGTGA
1 ATGAACCACTGGTCATTGCAGATAAACTACCGACTAAAATATGTTGTGA
* * * *
60735191 ATGAACCACTGGTCATTTCAGATAAATTGCCGACTAAAATATGTTGTGG
1 ATGAACCACTGGTCATTGCAGATAAACTACCGACTAAAATATGTTGTGA
* * * ** ** *
60735240 ATGAACCACTAGTCATTGCAGACAAACTGCTAACTAAAATACATTGTGG
1 ATGAACCACTGGTCATTGCAGATAAACTACCGACTAAAATATGTTGTGA
*
60735289 ATAAACCACTG
1 ATGAACCACTG
60735300 TCGTCGCAAA
Statistics
Matches: 89, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 89 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGAACCACTGGTCATTGCAGATAAACTACCGACTAAAATATGTTGTGA
Found at i:60735460 original size:34 final size:33
Alignment explanation
Indices: 60735365--60735508 Score: 123
Period size: 34 Copynumber: 4.3 Consensus size: 33
60735355 ATGCAACATG
* *
60735365 ACATGCTTATAATAGATCAATACGATAGCAATA
1 ACATGCTTATAATAGATCAATAAGGTAGCAATA
* * *
60735398 ACATTCTTATAGAAAG-TCGATACA-GTAGCATATA
1 ACATGCTTATA-ATAGATCAATA-AGGTAGCA-ATA
*
60735432 TCATGCTTATAATAGATCAATAAGGTAGCAATTA
1 ACATGCTTATAATAGATCAATAAGGTAGCAA-TA
* * *
60735466 ACATGCTTATAACATATCATTATA-GTAGCAATAA
1 ACATGCTTATAATAGATCAATA-AGGTAGCAAT-A
*
60735500 ACCTGCTTA
1 ACATGCTTA
60735509 ACATGTATTT
Statistics
Matches: 89, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
33 26 0.29
34 62 0.70
35 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (33 bp):
ACATGCTTATAATAGATCAATAAGGTAGCAATA
Found at i:60736591 original size:14 final size:15
Alignment explanation
Indices: 60736572--60736600 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60736562 CCTAGGTTGC
60736572 TAAAAATTAA-AGGA
1 TAAAAATTAAGAGGA
60736586 TAAAAATTAAGAGGA
1 TAAAAATTAAGAGGA
60736601 AAGTAATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (15 bp):
TAAAAATTAAGAGGA
Found at i:60738060 original size:9 final size:9
Alignment explanation
Indices: 60738043--60738079 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
60738033 TGAGTTTTCG
60738043 AATTCGAAT
1 AATTCGAAT
*
60738052 AACTCGAAT
1 AATTCGAAT
60738061 AATTCGAAT
1 AATTCGAAT
60738070 AATTCGAAT
1 AATTCGAAT
60738079 A
1 A
60738080 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:60739523 original size:10 final size:11
Alignment explanation
Indices: 60739502--60739526 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60739492 ATTTAGCTTG
60739502 TTTTTAATTTT
1 TTTTTAATTTT
60739513 TTTTTAATTTT
1 TTTTTAATTTT
60739524 TTT
1 TTT
60739527 AAAAATAGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTAATTTT
Found at i:60740725 original size:107 final size:106
Alignment explanation
Indices: 60740531--60740747 Score: 337
Period size: 107 Copynumber: 2.0 Consensus size: 106
60740521 CATTCAAAAG
* * *
60740531 TAAAATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAAATCGAGAAAATATACCCTAACGTGCTG
1 TAAAATTTCAAAGTAAAGCAATATTTAGCGTTTGGAAAATCGAGAAAACATACCCTAACGTGCTG
* *
60740596 GGTTTCGATTTCCCGTTTGACCAAATAAGCCAAATATCCTTT
66 GGTTTCGATTTCCCGTTCGACCAAAT-AGCCAAATATCCTCT
* * *
60740638 TAAAATTTCAAAGTAAATCAATATTTAGCGTTTGGAAAATCGAGAAAACGTGCCCTAACGTGCTG
1 TAAAATTTCAAAGTAAAGCAATATTTAGCGTTTGGAAAATCGAGAAAACATACCCTAACGTGCTG
60740703 GGTTTCGA-TTCCTCGTTCGACCAAATAGCCAAATATCCTCT
66 GGTTTCGATTTCC-CGTTCGACCAAATAGCCAAATATCCTCT
60740744 TAAA
1 TAAA
60740748 TCTAAATCCA
Statistics
Matches: 101, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
106 22 0.22
107 79 0.78
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (106 bp):
TAAAATTTCAAAGTAAAGCAATATTTAGCGTTTGGAAAATCGAGAAAACATACCCTAACGTGCTG
GGTTTCGATTTCCCGTTCGACCAAATAGCCAAATATCCTCT
Found at i:60741215 original size:29 final size:28
Alignment explanation
Indices: 60741183--60741288 Score: 106
Period size: 29 Copynumber: 3.6 Consensus size: 28
60741173 TCCAAAAAAT
*
60741183 TTAAAATTACAATTTGACTCTCAAATTTC
1 TTAAAATTACATTTTGAC-CTCAAATTTC
* * *
60741212 TTAAAATTACATTTTAACCCCTCTAACTTTT
1 TTAAAATTACATTTTGA--CCTC-AAATTTC
60741243 TTAAAATTACATTTTGACCAT-AAACTTTC
1 TTAAAATTACATTTTGACC-TCAAA-TTTC
*
60741272 TTAAAATTATATTTTGA
1 TTAAAATTACATTTTGA
60741289 GCCAAAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
28 2 0.03
29 36 0.56
30 4 0.06
31 22 0.34
ACGTcount: A:0.37, C:0.16, G:0.03, T:0.44
Consensus pattern (28 bp):
TTAAAATTACATTTTGACCTCAAATTTC
Found at i:60742010 original size:52 final size:52
Alignment explanation
Indices: 60741898--60742010 Score: 115
Period size: 52 Copynumber: 2.2 Consensus size: 52
60741888 AATTAATTAA
* * * *
60741898 TTAATTATTATTATTATTATCATTAGTATTATTATTTTTTCCTTCTATTTAT
1 TTAATTATTATTACTATTATCATTAGTATTATTAATTTTGCATTCTATTTAT
* * *
60741950 TTACTTATTATTACTA-TATTATTA-TATTAATTAATTTTGCATTAT-TATTATT
1 TTAATTATTATTACTATTATCATTAGTATT-ATTAATTTTGCATTCTAT-TTA-T
60742002 TTAATTATT
1 TTAATTATT
60742011 TATTTATCTA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
50 5 0.10
51 22 0.44
52 23 0.46
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (52 bp):
TTAATTATTATTACTATTATCATTAGTATTATTAATTTTGCATTCTATTTAT
Found at i:60742015 original size:13 final size:13
Alignment explanation
Indices: 60741993--60742066 Score: 50
Period size: 13 Copynumber: 5.8 Consensus size: 13
60741983 ATTTTGCATT
60741993 ATTA-TTATTTTA
1 ATTATTTATTTTA
60742005 ATTATTTA-TTT-
1 ATTATTTATTTTA
**
60742016 ATCTAAATATTTTA
1 AT-TATTTATTTTA
*
60742030 AATATATTATTTT-
1 ATTAT-TTATTTTA
*
60742043 ATTATGTCATTTTA
1 ATTAT-TTATTTTA
60742057 A-TATTTATTT
1 ATTATTTATTT
60742067 ATTTCTATCT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
11 2 0.04
12 16 0.34
13 21 0.45
14 8 0.17
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (13 bp):
ATTATTTATTTTA
Found at i:60747758 original size:13 final size:13
Alignment explanation
Indices: 60747740--60747776 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
60747730 ATTCGACTAA
* *
60747740 ATTTTTCATAAGT
1 ATTTTTCAAAAGC
60747753 ATTTTTCAAAAGC
1 ATTTTTCAAAAGC
60747766 ATTTTTCAAAA
1 ATTTTTCAAAA
60747777 ACAATGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (13 bp):
ATTTTTCAAAAGC
Found at i:60755652 original size:20 final size:19
Alignment explanation
Indices: 60755616--60755665 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
60755606 TTTCCATGTG
*
60755616 CTTTCCATTTTTCTTCTTT
1 CTTTTCATTTTTCTTCTTT
*
60755635 CTTTTCATTTCTTTTTCTTT
1 CTTTTCATTT-TTCTTCTTT
60755655 CTTTTCCATTT
1 CTTTT-CATTT
60755666 GATTTGCTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 9 0.33
20 13 0.48
21 5 0.19
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (19 bp):
CTTTTCATTTTTCTTCTTT
Found at i:60758540 original size:59 final size:59
Alignment explanation
Indices: 60758431--60758542 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 59
60758421 TAAAACTATG
* * *
60758431 AAAATATTAAAATCTTATATAAACTTAAAAAAATTACAAAATTCATTAAAAATTCTAAA
1 AAAATATTAAAATATTATAAAAACTTAAAAAAATTAAAAAATTCATTAAAAATTCTAAA
*
60758490 AAAATATCT-AAATATTATAAAAACTTATAAAAATTCAAATAAATT-A-TAAAAAT
1 AAAATAT-TAAAATATTATAAAAACTTAAAAAAATT-AAA-AAATTCATTAAAAAT
60758543 AGAATTAAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
59 37 0.80
60 4 0.09
61 5 0.11
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (59 bp):
AAAATATTAAAATATTATAAAAACTTAAAAAAATTAAAAAATTCATTAAAAATTCTAAA
Found at i:60758859 original size:13 final size:13
Alignment explanation
Indices: 60758841--60758868 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60758831 TAAAGTATTT
60758841 TAAAAATAAAAAA
1 TAAAAATAAAAAA
60758854 TAAAAATAAAAAA
1 TAAAAATAAAAAA
60758867 TA
1 TA
60758869 TATATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:60759515 original size:7 final size:7
Alignment explanation
Indices: 60759503--60759550 Score: 55
Period size: 7 Copynumber: 6.7 Consensus size: 7
60759493 CTTAGTCCCC
60759503 TCTAACA
1 TCTAACA
60759510 TCTAACAA
1 TCTAAC-A
60759518 TCCT--CA
1 T-CTAACA
60759524 TTCTAACA
1 -TCTAACA
60759532 TCTAACA
1 TCTAACA
60759539 TCTAACA
1 TCTAACA
60759546 TCTAA
1 TCTAA
60759551 TATATATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
6 3 0.08
7 27 0.75
8 4 0.11
9 2 0.06
ACGTcount: A:0.40, C:0.29, G:0.00, T:0.31
Consensus pattern (7 bp):
TCTAACA
Found at i:60770893 original size:19 final size:20
Alignment explanation
Indices: 60770869--60770912 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
60770859 CGTGAAAGTC
* *
60770869 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
60770888 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
60770908 -AATGC
1 TAATGC
60770913 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:60773274 original size:18 final size:19
Alignment explanation
Indices: 60773246--60773296 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
60773236 GGGATATATA
*
60773246 GATATATATATAATAAGAT
1 GATAAATATATAATAAGAT
*
60773265 -ATAAATATATGATAAGAT
1 GATAAATATATAATAAGAT
*
60773283 GATATATATA-AATA
1 GATAAATATATAATA
60773297 GTTATAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 19 0.70
19 8 0.30
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (19 bp):
GATAAATATATAATAAGAT
Found at i:60773310 original size:33 final size:37
Alignment explanation
Indices: 60773246--60773312 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
60773236 GGGATATATA
60773246 GATATATATATAATAAGATATAAATATATGATAAGAT
1 GATATATATATAATAAGATATAAATATATGATAAGAT
*
60773283 GATATATATA-AAT-AGTTAT-AATA-ATGATAA
1 GATATATATATAATAAGATATAAATATATGATAA
60773313 TAGGACAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.24
34 4 0.14
35 5 0.17
36 3 0.10
37 10 0.34
ACGTcount: A:0.54, C:0.00, G:0.10, T:0.36
Consensus pattern (37 bp):
GATATATATATAATAAGATATAAATATATGATAAGAT
Found at i:60774581 original size:23 final size:23
Alignment explanation
Indices: 60774554--60774602 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
60774544 TCGGGCTGGT
*
60774554 GTTGGTTTTGGGTATTGGGCTAG
1 GTTGGTTTAGGGTATTGGGCTAG
60774577 GTTGGTTTAGGGTATTGGGCTAG
1 GTTGGTTTAGGGTATTGGGCTAG
60774600 GTT
1 GTT
60774603 AGTTGGGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.10, C:0.04, G:0.43, T:0.43
Consensus pattern (23 bp):
GTTGGTTTAGGGTATTGGGCTAG
Found at i:60775161 original size:6 final size:7
Alignment explanation
Indices: 60775140--60775166 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
60775130 ATTATAATTG
60775140 TTTATTT
1 TTTATTT
60775147 TTTATTT
1 TTTATTT
60775154 TTTATTT
1 TTTATTT
60775161 TTTATT
1 TTTATT
60775167 AATTTATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTATTT
Found at i:60783368 original size:62 final size:62
Alignment explanation
Indices: 60783292--60783426 Score: 173
Period size: 62 Copynumber: 2.2 Consensus size: 62
60783282 CACAGCCGGA
* * *
60783292 CACACACCCATGTAGTTC-TCCCGTGTGTCTCAAATTTCAATTCAGTCAGTTACACGGCCTAC
1 CACACGCCCATGTAGTTCAT-CCGTGTGTCTCAAATTTCAACTCAGTCAGTTACACGGACTAC
* * * * *
60783354 CACACGCCCGTGTAGTTCATCCGTGTGTTTCAAATTTCAACTCATTCAGTTATATGGACTAC
1 CACACGCCCATGTAGTTCATCCGTGTGTCTCAAATTTCAACTCAGTCAGTTACACGGACTAC
60783416 CACACGGCCCA
1 CACAC-GCCCA
60783427 CCATACGTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
62 57 0.92
63 5 0.08
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (62 bp):
CACACGCCCATGTAGTTCATCCGTGTGTCTCAAATTTCAACTCAGTCAGTTACACGGACTAC
Found at i:60784032 original size:24 final size:22
Alignment explanation
Indices: 60783975--60784033 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
60783965 GACAATTACC
60783975 AACAAAAGAAAGAAGAGAAAAAG
1 AACAAAAG-AAGAAGAGAAAAAG
*
60783998 AAAAAGAAAGAAGAAGAGAGAAAAG
1 -AACA-AAAGAAGAAGAGA-AAAAG
60784023 AACAACAAGAA
1 AACAA-AAGAA
60784034 TGAGGGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
23 1 0.03
24 20 0.67
25 9 0.30
ACGTcount: A:0.73, C:0.05, G:0.22, T:0.00
Consensus pattern (22 bp):
AACAAAAGAAGAAGAGAAAAAG
Found at i:60785970 original size:156 final size:160
Alignment explanation
Indices: 60785664--60785976 Score: 476
Period size: 164 Copynumber: 2.0 Consensus size: 160
60785654 AACATTAGAT
*
60785664 ACACAGTTCTAGTAATCATACAAATTTAATATATATATATAAACATGAAATAGCTTTAAAAAATT
1 ACACAGTTCTAGTAATCATACAAATTTAATATATATATATAAACATGAAATAGCTTTAAAAAAAT
*
60785729 TAATTTAATTCTTCCCAGTCAATTATTTTATTCAAAATATCTAGATTCATAAAGTACTTGTATGT
66 TAATTTAATGCTTCCCAGTCAATTA-TTTATT---AATATCTAGATTCATAAAGTACTTGTATGT
60785794 CCATTTGCTCCCTAAACCATTCAACACGTTCGAA
127 CCATTTGCTCCCTAAACCATTCAACACGTTCGAA
* * *
60785828 ACACAGTTCTAGTAATCATACAAGTTTAATATATATATATATACATGAAATGGCTTTATAAAAAA
1 ACACAGTTCTAGTAATCATACAAATTTAATATATATATATAAACATGAAATAGCTTTA-AAAAAA
*
60785893 TTAATTTAATGCATT-CCGGTCAATTA-TT-TT-AT-TC-AGATTCATAAAGTACTTGTATGTCC
65 TTAATTTAATGC-TTCCCAGTCAATTATTTATTAATATCTAGATTCATAAAGTACTTGTATGTCC
60785952 ATTTGCTCCCTAAACCATTCAACAC
129 ATTTGCTCCCTAAACCATTCAACAC
60785977 TTCTTTATTA
Statistics
Matches: 141, Mismatches: 6, Indels: 12
0.89 0.04 0.08
Matches are distributed among these distances:
156 50 0.35
157 2 0.01
158 2 0.01
162 2 0.01
163 2 0.01
164 55 0.39
165 26 0.18
166 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (160 bp):
ACACAGTTCTAGTAATCATACAAATTTAATATATATATATAAACATGAAATAGCTTTAAAAAAAT
TAATTTAATGCTTCCCAGTCAATTATTTATTAATATCTAGATTCATAAAGTACTTGTATGTCCAT
TTGCTCCCTAAACCATTCAACACGTTCGAA
Found at i:60786506 original size:14 final size:14
Alignment explanation
Indices: 60786489--60786519 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
60786479 AGTAAAATAT
60786489 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
60786503 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
60786517 TTT
1 TTT
60786520 ACTTTTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:60791730 original size:18 final size:18
Alignment explanation
Indices: 60791706--60791751 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
60791696 TATATTAATT
*
60791706 TTTGTATCTGTTAATTCTG
1 TTTGTATCTGGT-ATTCTG
60791725 -TTGTATCTGGTATTCTG
1 TTTGTATCTGGTATTCTG
60791742 TTTGTATCTG
1 TTTGTATCTG
60791752 ACTATGGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.13, C:0.11, G:0.20, T:0.57
Consensus pattern (18 bp):
TTTGTATCTGGTATTCTG
Found at i:60796996 original size:15 final size:16
Alignment explanation
Indices: 60796965--60796997 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
60796955 TAATAAATAT
60796965 ATGGAATTTATTATCA
1 ATGGAATTTATTATCA
60796981 ATGGAATTTA-TATCA
1 ATGGAATTTATTATCA
60796996 AT
1 AT
60796998 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.42
Consensus pattern (16 bp):
ATGGAATTTATTATCA
Found at i:60797026 original size:17 final size:16
Alignment explanation
Indices: 60796998--60797045 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
60796988 TTATATCAAT
*
60796998 TAATAATGATTTTTTA
1 TAATAATTATTTTTTA
60797014 TAATTAATTATTTTTATA
1 TAA-TAATTATTTTT-TA
*
60797032 TGATAA-TATTTTTT
1 TAATAATTATTTTTT
60797046 TGTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 1 0.04
16 10 0.36
17 13 0.46
18 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (16 bp):
TAATAATTATTTTTTA
Found at i:60799201 original size:20 final size:19
Alignment explanation
Indices: 60799176--60799294 Score: 75
Period size: 20 Copynumber: 6.1 Consensus size: 19
60799166 CGGGTATGGA
*
60799176 TTAGGGTTTGGGATTAAGGT
1 TTAGGGTTTGGG-TTAGGGT
60799196 TTAGGGGTTTAGGGTTAGGGT
1 TTA-GGGTTT-GGGTTAGGGT
* *
60799217 CTAGGGTTATGGGTTAGGGG
1 TTAGGGTT-TGGGTTAGGGT
*
60799237 TTAGGG-AT---TTAGGGT
1 TTAGGGTTTGGGTTAGGGT
* *
60799252 TTGGGGTTTGTGATTTAGGGT
1 TTAGGGTTTG-G-GTTAGGGT
**
60799273 TTAGGGTTGTGATTTAGGGT
1 TTAGGGTT-TGGGTTAGGGT
60799293 TT
1 TT
60799295 GGGCTTAAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
15 11 0.14
16 1 0.01
18 1 0.01
20 32 0.41
21 29 0.37
22 5 0.06
ACGTcount: A:0.15, C:0.01, G:0.43, T:0.41
Consensus pattern (19 bp):
TTAGGGTTTGGGTTAGGGT
Found at i:60799215 original size:14 final size:14
Alignment explanation
Indices: 60799176--60799260 Score: 75
Period size: 14 Copynumber: 6.1 Consensus size: 14
60799166 CGGGTATGGA
* *
60799176 TTAGGGTTTGGGAT
1 TTAGGGTTAGGGGT
* *
60799190 TAAGGTTTAGGGGT
1 TTAGGGTTAGGGGT
60799204 TTAGGGTTA-GGGT
1 TTAGGGTTAGGGGT
* *
60799217 CTAGGGTTATGGG-
1 TTAGGGTTAGGGGT
*
60799230 TTAGGGGTTAGGGAT
1 TTA-GGGTTAGGGGT
*
60799245 TTAGGGTTTGGGGT
1 TTAGGGTTAGGGGT
60799259 TT
1 TT
60799261 GTGATTTAGG
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
13 14 0.25
14 39 0.70
15 3 0.05
ACGTcount: A:0.15, C:0.01, G:0.45, T:0.39
Consensus pattern (14 bp):
TTAGGGTTAGGGGT
Found at i:60799221 original size:7 final size:6
Alignment explanation
Indices: 60799176--60799252 Score: 55
Period size: 7 Copynumber: 11.3 Consensus size: 6
60799166 CGGGTATGGA
* *
60799176 TTAGGG TTTGGG ATTAAGGT TTAGGGG TTTAGGG TTAGGG TCTAGGG TTATGGG
1 TTAGGG TTAGGG -TT-AGGG TTA-GGG -TTAGGG TTAGGG T-TAGGG TTA-GGG
60799230 TTAGGGG TTAGGG ATTTAGGG TT
1 TTA-GGG TTAGGG --TTAGGG TT
60799253 TGGGGTTTGT
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
6 20 0.34
7 27 0.47
8 11 0.19
ACGTcount: A:0.17, C:0.01, G:0.44, T:0.38
Consensus pattern (6 bp):
TTAGGG
Found at i:60799257 original size:21 final size:21
Alignment explanation
Indices: 60799196--60799314 Score: 95
Period size: 21 Copynumber: 5.8 Consensus size: 21
60799186 GGATTAAGGT
* *
60799196 TTAGGGGTTTAGGG-TTAGGG
1 TTAGGGATTTAGGGTTTGGGG
*
60799216 TCTAGGG--TTATGGGTTAGGGG
1 T-TAGGGATTTA-GGGTTTGGGG
60799237 TTAGGGATTTAGGGTTTGGGG
1 TTAGGGATTTAGGGTTTGGGG
* * *
60799258 TTTGTGATTTAGGGTTTAGGG
1 TTAGGGATTTAGGGTTTGGGG
* *
60799279 TT-GTGATTTAGGGTTTGGGC
1 TTAGGGATTTAGGGTTTGGGG
*
60799299 TTAAGG-TTTATGGGTT
1 TTAGGGATTTA-GGGTT
60799315 AAGGACTTAG
Statistics
Matches: 82, Mismatches: 10, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
19 3 0.04
20 31 0.38
21 45 0.55
22 3 0.04
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (21 bp):
TTAGGGATTTAGGGTTTGGGG
Found at i:60800212 original size:23 final size:24
Alignment explanation
Indices: 60800182--60800238 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
60800172 CACTTAGCCG
60800182 AAATTCCCCCCAAATTAT-CCCCA
1 AAATTCCCCCCAAATTATCCCCCA
* *
60800205 AAATTCCCCCCGAATTTTCCCCCA
1 AAATTCCCCCCAAATTATCCCCCA
60800229 AAATTCCCCC
1 AAATTCCCCC
60800239 AATTCTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 16 0.52
24 15 0.48
ACGTcount: A:0.30, C:0.46, G:0.02, T:0.23
Consensus pattern (24 bp):
AAATTCCCCCCAAATTATCCCCCA
Found at i:60800214 original size:11 final size:11
Alignment explanation
Indices: 60800182--60800240 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 11
60800172 CACTTAGCCG
*
60800182 AAATTCCCCCC
1 AAATTCCCCCA
*
60800193 AAATTATCCCCA
1 AAATT-CCCCCA
60800205 AAATTCCCCCCGA
1 AAATT-CCCCC-A
**
60800218 ATTTTCCCCCA
1 AAATTCCCCCA
60800229 AAATTCCCCCA
1 AAATTCCCCCA
60800240 A
1 A
60800241 TTCTAGAACC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
11 16 0.42
12 18 0.47
13 4 0.11
ACGTcount: A:0.32, C:0.44, G:0.02, T:0.22
Consensus pattern (11 bp):
AAATTCCCCCA
Found at i:60800341 original size:13 final size:14
Alignment explanation
Indices: 60800312--60800341 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
60800302 GTTGTCGCTC
60800312 GTCGACCGTCGACT
1 GTCGACCGTCGACT
60800326 GTCGACCGTC-ACT
1 GTCGACCGTCGACT
60800339 GTC
1 GTC
60800342 CTGTGCTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.13, C:0.37, G:0.27, T:0.23
Consensus pattern (14 bp):
GTCGACCGTCGACT
Found at i:60800722 original size:12 final size:12
Alignment explanation
Indices: 60800707--60800746 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
60800697 TGTAATACTG
60800707 TTTGTTCATAAT
1 TTTGTTCATAAT
60800719 TTTGTT-ACTAAT
1 TTTGTTCA-TAAT
*
60800731 TTTGTTCATAAG
1 TTTGTTCATAAT
60800743 TTTG
1 TTTG
60800747 AAACTGTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.23, C:0.07, G:0.12, T:0.57
Consensus pattern (12 bp):
TTTGTTCATAAT
Found at i:60800854 original size:31 final size:31
Alignment explanation
Indices: 60800800--60800881 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
60800790 TCACTTGAAC
60800800 TGCGTTTTATATG--CAT-AGTTGTTTTATA
1 TGCGTTTTATATGTTCATAAGTTGTTTTATA
*
60800828 TGCGTCTTATATGTTCATAAGTTGTTTTATA
1 TGCGTTTTATATGTTCATAAGTTGTTTTATA
60800859 TGCGTTTTATATGTTCATAAGTT
1 TGCGTTTTATATGTTCATAAGTT
60800882 TGAAATTTGT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
28 12 0.24
30 3 0.06
31 34 0.69
ACGTcount: A:0.22, C:0.09, G:0.17, T:0.52
Consensus pattern (31 bp):
TGCGTTTTATATGTTCATAAGTTGTTTTATA
Found at i:60802304 original size:69 final size:69
Alignment explanation
Indices: 60802193--60802493 Score: 541
Period size: 69 Copynumber: 4.3 Consensus size: 69
60802183 TTCTAGAAAT
* *
60802193 TTTTA-AAACTAATTGTACATGTTATTTTTCTAAATATTAACATATATATTTTCAATAATAAATT
1 TTTTAGAAA-TAATTGTAAATGTTA-TTTTCTAAATATTAACATCTATATTTTCAATAATAAATT
60802257 TTATAA
64 TTATAA
*
60802263 TTTTAGAAATAATTGTAAATGTTGTTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
60802328 ATAA
66 ATAA
60802332 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
60802397 ATAA
66 ATAA
60802401 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
1 TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
60802466 ATAA
66 ATAA
*
60802470 TTTTAGAAAGAATTGTAAATGTTA
1 TTTTAGAAATAATTGTAAATGTTA
60802494 CATAATTCAA
Statistics
Matches: 225, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
69 204 0.91
70 18 0.08
71 3 0.01
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.48
Consensus pattern (69 bp):
TTTTAGAAATAATTGTAAATGTTATTTTCTAAATATTAACATCTATATTTTCAATAATAAATTTT
ATAA
Found at i:60802330 original size:21 final size:21
Alignment explanation
Indices: 60802237--60802474 Score: 83
Period size: 21 Copynumber: 10.4 Consensus size: 21
60802227 TATTAACATA
*
60802237 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
60802258 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* * *
60802285 TGT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
60802306 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
60802327 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
60802354 TAT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
60802375 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
*
60802396 TATAATTTTAGAAATAATTGTAAATGT
1 TAT-ATTTT--AAATAA---TAAATTT
* *
60802423 TAT-TTTCTAAATATTAACA-TC
1 TATATTT-TAAATAATAA-ATTT
*
60802444 TATATTTTCAATAATAAATTT
1 TATATTTTAAATAATAAATTT
60802465 TATAATTTTA
1 TAT-ATTTTA
60802475 GAAAGAATTG
Statistics
Matches: 159, Mismatches: 27, Indels: 61
0.64 0.11 0.25
Matches are distributed among these distances:
20 3 0.02
21 56 0.35
22 32 0.20
24 30 0.19
25 9 0.06
26 3 0.02
27 26 0.16
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (21 bp):
TATATTTTAAATAATAAATTT
Found at i:60802434 original size:24 final size:22
Alignment explanation
Indices: 60802211--60802439 Score: 58
Period size: 21 Copynumber: 10.0 Consensus size: 22
60802201 CTAATTGTAC
60802211 ATGTTATTTTTCTAAAT-ATTAA
1 ATGTTA-TTTTCTAAATAATTAA
*
60802233 CATATATATTTTC--AATAA-TAA
1 -ATGT-TATTTTCTAAATAATTAA
*
60802254 ATTTTATAATTT-TAGAAATAATTGTAA
1 ATGTTAT--TTTCT--AAATAA-T-TAA
*
60802281 ATGTTGTTTTCTAAAT-ATTAA
1 ATGTTATTTTCTAAATAATTAA
*
60802302 CATCTATATTTTC--AATAA-TAA
1 -ATGT-TATTTTCTAAATAATTAA
*
60802323 ATTTTATAATTT-TAGAAATAATTGTAA
1 ATGTTAT--TTTCT--AAATAA-T-TAA
60802350 ATGTTATTTTCTAAAT-ATTAA
1 ATGTTATTTTCTAAATAATTAA
*
60802371 CATCTATATTTTC--AATAA-TAA
1 -ATGT-TATTTTCTAAATAATTAA
*
60802392 ATTTTATAATTT-TAGAAATAATTGTAA
1 ATGTTAT--TTTCT--AAATAA-T-TAA
60802419 ATGTTATTTTCTAAAT-ATTAA
1 ATGTTATTTTCTAAATAATTAA
60802440 CATCTATATT
Statistics
Matches: 157, Mismatches: 11, Indels: 78
0.64 0.04 0.32
Matches are distributed among these distances:
19 9 0.06
20 9 0.06
21 36 0.23
22 12 0.08
23 24 0.15
24 29 0.18
25 9 0.06
26 3 0.02
27 26 0.17
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.48
Consensus pattern (22 bp):
ATGTTATTTTCTAAATAATTAA
Found at i:60802750 original size:16 final size:16
Alignment explanation
Indices: 60802721--60802774 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
60802711 GTCGGACTTG
* *
60802721 CATACCTTATATAATA
1 CATAACTTACATAATA
*
60802737 CTTAACTTACATAATA
1 CATAACTTACATAATA
60802753 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
60802770 CATAA
1 CATAA
60802775 TAAGTTACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
16 27 0.82
17 6 0.18
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:60802800 original size:126 final size:126
Alignment explanation
Indices: 60802668--60803036 Score: 587
Period size: 135 Copynumber: 2.8 Consensus size: 126
60802658 TAACAACTTG
* *
60802668 CATAACTCACATAACTAAATCAATTTATATTATACATTAACTTGTCGGACTTGCATACCTTATAT
1 CATAACTCACATAACTAAATGAATTTATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
60802733 AATACTTAACTTACATAATACATAACTTACATAATAACATAATAAGTTACATAATATTATA
66 AATACTTAACTTACATAATACATAACTTACATAATAACATAATAAGTTACATAATATTATA
*
60802794 CATAACTCACATAACTAAATGAATTAATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
1 CATAACTCACATAACTAAATGAATTTATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
*
60802859 AATACTTAACTTACATAACTTACATAATACATAACTTACATAATAACATAATACGTTACATAATA
66 -A-A--T-AC-T---TAACTTACATAATACATAACTTACATAATAACATAATAAGTTACATAATA
60802924 TTATA
122 TTATA
*
60802929 CGTAACTCACATAACTAAATGAATTTATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
1 CATAACTCACATAACTAAATGAATTTATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
60802994 AATACTTAACTTACATAACTTACATAACTTACATAAT-ACATAA
66 AATACTTAACTTACATAA--TACATAACTTACATAATAACATAA
60803037 CTTACGTAAT
Statistics
Matches: 226, Mismatches: 6, Indels: 21
0.89 0.02 0.08
Matches are distributed among these distances:
126 74 0.33
127 7 0.03
128 18 0.08
129 1 0.00
130 3 0.01
131 3 0.01
132 1 0.00
133 1 0.00
134 1 0.00
135 117 0.52
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.35
Consensus pattern (126 bp):
CATAACTCACATAACTAAATGAATTTATATTATACATTAACTTGTCGGACTTGCATAACTTATAT
AATACTTAACTTACATAATACATAACTTACATAATAACATAATAAGTTACATAATATTATA
Found at i:60802860 original size:9 final size:9
Alignment explanation
Indices: 60802842--60803063 Score: 96
Period size: 9 Copynumber: 25.3 Consensus size: 9
60802832 AACTTGTCGG
*
60802842 ACTTGCATA
1 ACTTACATA
*
60802851 ACTTATATA
1 ACTTACATA
*
60802860 A--TACTTA
1 ACTTACATA
60802867 ACTTACATA
1 ACTTACATA
60802876 ACTTACATA
1 ACTTACATA
60802885 A--TACATA
1 ACTTACATA
60802892 ACTTACATA
1 ACTTACATA
*
60802901 A-TAACATAA
1 ACTTACAT-A
60802910 TACGTTACATAA
1 -AC-TTACAT-A
* *
60802922 TATTATACGTA
1 -ACT-TACATA
*
60802933 ACTCACATA
1 ACTTACATA
*
60802942 AC-TAAATGA
1 ACTTACAT-A
* * *
60802951 ATTTATATT
1 ACTTACATA
60802960 A--TACATTA
1 ACTTACA-TA
* **
60802968 ACTTGTCGGA
1 ACTT-ACATA
*
60802978 -CTTGCATA
1 ACTTACATA
*
60802986 ACTTATATA
1 ACTTACATA
*
60802995 A--TACTTA
1 ACTTACATA
60803002 ACTTACATA
1 ACTTACATA
60803011 ACTTACATA
1 ACTTACATA
60803020 ACTTACATA
1 ACTTACATA
60803029 A--TACATA
1 ACTTACATA
*
60803036 ACTTACGTA
1 ACTTACATA
60803045 A--TACATA
1 ACTTACATA
60803052 ACTTACATA
1 ACTTACATA
60803061 ACT
1 ACT
60803064 CATATATACT
Statistics
Matches: 159, Mismatches: 32, Indels: 44
0.68 0.14 0.19
Matches are distributed among these distances:
7 33 0.21
8 12 0.08
9 89 0.56
10 9 0.06
11 3 0.02
12 13 0.08
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (9 bp):
ACTTACATA
Found at i:60802876 original size:25 final size:25
Alignment explanation
Indices: 60802842--60802912 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
60802832 AACTTGTCGG
* * *
60802842 ACTTGCATAACTTATATAATACTTA
1 ACTTACATAACTTACATAATACATA
60802867 ACTTACATAACTTACATAATACATA
1 ACTTACATAACTTACATAATACATA
*
60802892 ACTTACATAA-TAACATAATAC
1 ACTTACATAACTTACATAATAC
60802913 GTTACATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 10 0.24
25 32 0.76
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.34
Consensus pattern (25 bp):
ACTTACATAACTTACATAATACATA
Found at i:60802919 original size:20 final size:17
Alignment explanation
Indices: 60802871--60803061 Score: 97
Period size: 16 Copynumber: 10.9 Consensus size: 17
60802861 TACTTAACTT
60802871 ACATAACTTACATAAT-
1 ACATAACTTACATAATA
60802887 ACATAACTTACATAATA
1 ACATAACTTACATAATA
60802904 ACATAATACGTTACATAATATTA
1 ACAT-A-AC-TTACAT-A-A-TA
* *
60802927 TACGTAACTCACATAACTA
1 -ACATAACTTACATAA-TA
* * *
60802946 A-ATGAATTTATATTAT-
1 ACAT-AACTTACATAATA
* ** * *
60802962 ACATTAACTTGTCGGACTT
1 ACA-TAACTT-ACATAATA
* *
60802981 GCATAACTTATATAAT-
1 ACATAACTTACATAATA
* *
60802997 ACTTAACTTACATAACTT
1 ACATAACTTACATAA-TA
60803015 ACATAACTTACATAAT-
1 ACATAACTTACATAATA
*
60803031 ACATAACTTACGTAAT-
1 ACATAACTTACATAATA
60803047 ACATAACTTACATAA
1 ACATAACTTACATAA
60803062 CTCATATATA
Statistics
Matches: 133, Mismatches: 27, Indels: 30
0.70 0.14 0.16
Matches are distributed among these distances:
16 58 0.44
17 15 0.11
18 31 0.23
19 7 0.05
20 7 0.05
21 6 0.05
22 3 0.02
23 3 0.02
24 3 0.02
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (17 bp):
ACATAACTTACATAATA
Found at i:60803011 original size:25 final size:25
Alignment explanation
Indices: 60802977--60803063 Score: 106
Period size: 25 Copynumber: 3.5 Consensus size: 25
60802967 AACTTGTCGG
* * *
60802977 ACTTGCATAACTTATATAATACTTA
1 ACTTACATAACTTACATAATACATA
60803002 ACTTACATAACTTACATAACTTACATA
1 ACTTACATAACTTACATAA--TACATA
*
60803029 A--TACATAACTTACGTAATACATA
1 ACTTACATAACTTACATAATACATA
60803052 ACTTACATAACT
1 ACTTACATAACT
60803064 CATATATACT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
23 7 0.13
25 41 0.76
27 6 0.11
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (25 bp):
ACTTACATAACTTACATAATACATA
Found at i:60803067 original size:16 final size:16
Alignment explanation
Indices: 60802982--60803061 Score: 115
Period size: 16 Copynumber: 4.9 Consensus size: 16
60802972 GTCGGACTTG
*
60802982 CATAACTTATATAATA
1 CATAACTTACATAATA
*
60802998 CTTAACTTACATAACTTA
1 CATAACTTACATAA--TA
60803016 CATAACTTACATAATA
1 CATAACTTACATAATA
*
60803032 CATAACTTACGTAATA
1 CATAACTTACATAATA
60803048 CATAACTTACATAA
1 CATAACTTACATAA
60803062 CTCATATATA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
16 42 0.74
18 15 0.26
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:60803845 original size:135 final size:135
Alignment explanation
Indices: 60803603--60803873 Score: 515
Period size: 135 Copynumber: 2.0 Consensus size: 135
60803593 CGAATATTTT
60803603 TAAAGCCATTTGTGGAAAAGTTTTGGATGTTGAAGAACTTCAGAAGGTACAAGATCGAGCTGCGT
1 TAAAGCCATTTGTGGAAAAGTTTTGGATGTTGAAGAACTTCAGAAGGTACAAGATCGAGCTGCGT
*
60803668 TGACTTTATGCAACTTGGAGAAAATCTTCCCACCTTCCTTCTTTACTATTATGGTTCACTTGATA
66 TGACTTTATGCAACTTGGAGAAAATCTTCCCACCTTCCTTCTTCACTATTATGGTTCACTTGATA
60803733 ATCCA
131 ATCCA
* *
60803738 TAAAGCCATTTGTGGCAAAGTTTTGGATGTTGAAGAACTTTAGAAGGTACAAGATCGAGCTGCGT
1 TAAAGCCATTTGTGGAAAAGTTTTGGATGTTGAAGAACTTCAGAAGGTACAAGATCGAGCTGCGT
60803803 TGACTTTATGCAACTTGGAGAAAATCTTCCCACCTTCCTTCTTCACTATTATGGTTCACTTGATA
66 TGACTTTATGCAACTTGGAGAAAATCTTCCCACCTTCCTTCTTCACTATTATGGTTCACTTGATA
60803868 ATCCA
131 ATCCA
60803873 T
1 T
60803874 CTCCCGCATG
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 133 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (135 bp):
TAAAGCCATTTGTGGAAAAGTTTTGGATGTTGAAGAACTTCAGAAGGTACAAGATCGAGCTGCGT
TGACTTTATGCAACTTGGAGAAAATCTTCCCACCTTCCTTCTTCACTATTATGGTTCACTTGATA
ATCCA
Found at i:60807590 original size:129 final size:129
Alignment explanation
Indices: 60807394--60807730 Score: 505
Period size: 129 Copynumber: 2.6 Consensus size: 129
60807384 AGTCAAGGTC
** * * **
60807394 TTTTAGCGGCGTTTGTGAGAAAAATCGCCGCTAAAAGTCAGGGTTTTTAGTGGCGTTTGTGCCCG
1 TTTT-GCGGCGTTTGT-AGTGAAAGCGCCGCTAAAAGTCAGGGTTTTTAGCGGCGTTTGTGGTCG
*
60807459 AAGCGCCGCTAAAGGTCAACGTATCTAGTGGCGTTTTTAAATAAAGCGCCGCTATAGGCTAATGT
64 AAGCGCCGCTAAAGGTCAACGTATCTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGT
60807524 A
129 A
*
60807525 TTTTGCGGCGTTTGTAGTGAAAGCGCCGCAAAAAGTCAGGGTTTTTAGCGGCGTTTGTGGTCGAA
1 TTTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAAGTCAGGGTTTTTAGCGGCGTTTGTGGTCGAA
*
60807590 GCGCCGCTAAAGGTCAAGGTATCTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGTA
66 GCGCCGCTAAAGGTCAACGTATCTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGTA
* * * * **
60807654 TTTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAGGTAAAGTTTTTTAGCGGCGTTT-TAGGTTAA
1 TTTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAAGTCAGGGTTTTTAGCGGCGTTTGT-GGTCGA
60807718 AGCGCCGCTAAAG
65 AGCGCCGCTAAAG
60807731 ATAATAACCT
Statistics
Matches: 189, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
128 1 0.01
129 173 0.92
130 11 0.06
131 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (129 bp):
TTTTGCGGCGTTTGTAGTGAAAGCGCCGCTAAAAGTCAGGGTTTTTAGCGGCGTTTGTGGTCGAA
GCGCCGCTAAAGGTCAACGTATCTAGTGGCGTTTGTAAATAAAGCGCCGCTATAGGCTAATGTA
Found at i:60807635 original size:43 final size:43
Alignment explanation
Indices: 60807369--60807730 Score: 243
Period size: 43 Copynumber: 8.4 Consensus size: 43
60807359 CATTTTTTTG
* * *
60807369 TAAAGCGTCGCTAAAAGTCAAGGTCTTTTAGCGGCGTTTGTGAGAA
1 TAAAGCGCCGCTAAAGGTCAAGGT-ATTTAGCGGCGTTTGT-A-AA
* * * * * ***
60807415 -AAATCGCCGCTAAAAGTCAGGGTTTTTAGTGGCGTTTGTGCC
1 TAAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTAAA
** * * * *
60807457 CGAAGCGCCGCTAAAGGTCAACGTATCTAGTGGCGTTTTTAAA
1 TAAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTAAA
* * * *
60807500 TAAAGCGCCGCTATAGG-CTAATGTATTTTGCGGCGTTTGT-AG
1 TAAAGCGCCGCTAAAGGTC-AAGGTATTTAGCGGCGTTTGTAAA
* * * * **
60807542 TGAAAGCGCCGCAAAAAGTCAGGGTTTTTAGCGGCGTTTGT-GG
1 T-AAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTAAA
* * *
60807585 TCGAAGCGCCGCTAAAGGTCAAGGTATCTAGTGGCGTTTGTAAA
1 T-AAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTAAA
* * * *
60807629 TAAAGCGCCGCTATAGG-CTAATGTATTTTGCGGCGTTTGT-AG
1 TAAAGCGCCGCTAAAGGTC-AAGGTATTTAGCGGCGTTTGTAAA
* * * **
60807671 TGAAAGCGCCGCTAAAGGTAAAGTTTTTTAGCGGCGTTT-TAGGT
1 T-AAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTA-AA
60807715 TAAAGCGCCGCTAAAG
1 TAAAGCGCCGCTAAAG
60807731 ATAATAACCT
Statistics
Matches: 246, Mismatches: 60, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
42 7 0.03
43 201 0.82
44 18 0.07
45 20 0.08
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (43 bp):
TAAAGCGCCGCTAAAGGTCAAGGTATTTAGCGGCGTTTGTAAA
Found at i:60807787 original size:43 final size:43
Alignment explanation
Indices: 60807737--60807831 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
60807727 AAAGATAATA
* *
60807737 ACCTTTAGCAGTGCTTAAGCCACAAACGCCGCTAAAGAGCT-TG
1 ACCTTTAGCAGCGCTCAAGCCACAAACGCCGCTAAA-AGCTGTG
* * **
60807780 ACTTTTAGCGGCGCTCAATTCACAAACGCCGCTAAAAGCTGTG
1 ACCTTTAGCAGCGCTCAAGCCACAAACGCCGCTAAAAGCTGTG
60807823 ACCTTTAGC
1 ACCTTTAGC
60807832 GGCGTTTGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
ACCTTTAGCAGCGCTCAAGCCACAAACGCCGCTAAAAGCTGTG
Found at i:60809338 original size:3 final size:3
Alignment explanation
Indices: 60809330--60809363 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
60809320 CAATATCTAA
60809330 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
60809364 ACTAATCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:60810676 original size:20 final size:20
Alignment explanation
Indices: 60810653--60810690 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60810643 TTTGCAAGAG
*
60810653 TTTAGGGTTTTTTTATATTT
1 TTTAAGGTTTTTTTATATTT
*
60810673 TTTAAGTTTTTTTTATAT
1 TTTAAGGTTTTTTTATAT
60810691 CCTTTAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.71
Consensus pattern (20 bp):
TTTAAGGTTTTTTTATATTT
Found at i:60810681 original size:19 final size:18
Alignment explanation
Indices: 60810659--60810715 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 18
60810649 AGAGTTTAGG
60810659 GTTTTTTTATATTTTTTAA
1 GTTTTTTTATATTTTTT-A
**
60810678 GTTTTTTTTATATCCTTTA
1 G-TTTTTTTATATTTTTTA
60810697 GTTTATTTTATAATTTTTT
1 GTTT-TTTTAT-ATTTTTT
60810716 TGATGCAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 3 0.10
19 9 0.29
20 19 0.61
ACGTcount: A:0.19, C:0.04, G:0.05, T:0.72
Consensus pattern (18 bp):
GTTTTTTTATATTTTTTA
Found at i:60810696 original size:20 final size:19
Alignment explanation
Indices: 60810660--60810708 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
60810650 GAGTTTAGGG
**
60810660 TTTTTTTATATTTTTTAAGT
1 TTTTTTTATATCCTTT-AGT
60810680 TTTTTTTATATCCTTTAGT
1 TTTTTTTATATCCTTTAGT
*
60810699 TTATTTTATA
1 TTTTTTTATA
60810709 ATTTTTTTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (19 bp):
TTTTTTTATATCCTTTAGT
Found at i:60812044 original size:21 final size:24
Alignment explanation
Indices: 60812006--60812054 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
60811996 TGTGCTTCCA
*
60812006 ATTTTTCTCTTTTCTTTCAATTT-
1 ATTTTTCTCTTCTCTTTCAATTTG
*
60812029 ATTTTTCT-TTCT-TTTCCATTTG
1 ATTTTTCTCTTCTCTTTCAATTTG
60812051 ATTT
1 ATTT
60812055 GCTACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 7 0.30
23 8 0.35
ACGTcount: A:0.12, C:0.16, G:0.02, T:0.69
Consensus pattern (24 bp):
ATTTTTCTCTTCTCTTTCAATTTG
Found at i:60812821 original size:113 final size:114
Alignment explanation
Indices: 60812412--60813048 Score: 915
Period size: 114 Copynumber: 5.6 Consensus size: 114
60812402 GGATTTAGCG
* *
60812412 GCGCCGCAAAAAAACCTAAGCTCAACGATGCCGTTTTCTGAGCTTTC-GGAGATTTAGCGGCATT
1 GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGG-GATTTAGCGGCGTT
* * *
60812476 TTTACGAAAGCGCCGCTAATG-TTCAGGGCTTTAGCTGAGTTTTTGAGAAA
65 TTTAAGAAAGCGCCGCTAATGCTT-AGGGCTTTAGCGGCGTTTTTGAGAAA
* * ** *
60812526 GCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCATTT
1 GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
* * * *
60812591 TTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAA
66 TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAA
* * *
60812640 GCACCGCAAAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGT
1 GCGCCGC--AAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGT
*
60812705 TTTTAAGAAAGCGTCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAA
64 TTTTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAA
* **
60812756 GTGCCGC-AAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTTTGGGATTTAGCGGCGTTT
1 GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
* * * *
60812820 TTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTG-GAAAA
66 TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAG-AAA
* *
60812869 GCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
1 GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
*
60812934 TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAA
66 TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAA
* * *
60812983 GCGCCGCAAAAAAA-CTAAGCCCAACGGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTT
1 GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
60813047 TT
66 TT
60813049 GGGAAAGCAC
Statistics
Matches: 470, Mismatches: 46, Indels: 15
0.89 0.09 0.03
Matches are distributed among these distances:
112 1 0.00
113 151 0.32
114 214 0.46
115 4 0.01
116 100 0.21
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (114 bp):
GCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTT
TTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAA
Found at i:60813093 original size:186 final size:187
Alignment explanation
Indices: 60812848--60813235 Score: 584
Period size: 186 Copynumber: 2.1 Consensus size: 187
60812838 TGCTCAGGAC
* * **
60812848 TTTAGAGGCATTTTTGGAAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCT
1 TTTAGCGGCATTTTTGGAAAAGCACCGCAAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
* * **
60812913 TTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTT-AGGGCTTTAGCGGCGTTTTT
66 TTCAGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATG-TTCAGGGCTTTAGCGAAGTTTTT
*
60812977 GGGAAAGCGCCGCAAAAAAA-CTAAGCCCAACGGTGCCATTTTCTAAGCTT-TCAGGGA
130 GAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTAAGCTTCT-AGGGA
* * * * *
60813034 TTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTAAGCCCAACGACGCTGTTTTCTGAGCT
1 TTTAGCGGCATTTTTGGAAAAGCACCGCAAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
*
60813099 TTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGTTCAGGGCTTTAGCGAAGTTTTTG
66 TTCAGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGTTCAGGGCTTTAGCGAAGTTTTTG
* *
60813164 AGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTGAGCTTCTGGGGA
131 AGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTAAGCTTCTAGGGA
60813221 TTTAGCGGCATTTTT
1 TTTAGCGGCATTTTT
60813236 AAGAAAGCGC
Statistics
Matches: 181, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
185 2 0.01
186 131 0.72
187 47 0.26
188 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (187 bp):
TTTAGCGGCATTTTTGGAAAAGCACCGCAAAAAAAACTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCAGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGTTCAGGGCTTTAGCGAAGTTTTTG
AGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTAAGCTTCTAGGGA
Found at i:60813107 original size:73 final size:72
Alignment explanation
Indices: 60812957--60813121 Score: 240
Period size: 73 Copynumber: 2.3 Consensus size: 72
60812947 GCTAATGCTT
* * **
60812957 AGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCATTTTCTA
1 AGGGATTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACTAAGCCCAACGACGCCATTTTCTA
60813022 AGCTTTC
66 AGCTTTC
* **
60813029 AGGGATTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTAAGCCCAACGACGCTGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAA-CTAAGCCCAACGACGCCATTTTCT
*
60813094 GAGCTTTC
65 AAGCTTTC
*
60813102 GGGGATTTAGCGGCGTTTTT
1 AGGGATTTAGCGGCGTTTTT
60813122 AAGAAAACAC
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 37 0.45
73 46 0.55
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (72 bp):
AGGGATTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACTAAGCCCAACGACGCCATTTTCTA
AGCTTTC
Found at i:60813109 original size:300 final size:301
Alignment explanation
Indices: 60812730--60813364 Score: 884
Period size: 300 Copynumber: 2.1 Consensus size: 301
60812720 GCTAATGCTT
* ** *
60812730 AGGGCTTTAGCGGCGTTTTTGAGAAAGTGCCGCAAAAAACCTAAGCCCAACGATGCCGTTTTCTG
1 AGGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
** * * * *
60812795 AGCTTTTTGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCA-T
66 AGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGCTCAGGACTTTAG-CGAAGT
*
60812859 TTTTG-GAAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTT-TCAGGGAT
130 TTTTGAG-AAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCATTTTCTGAGCTTCT-AGGGAT
* * * * ** *
60812922 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGC
193 TTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAGCAC
**
60812987 CGC-AAAAAAA-CTAAGCCCAACGGTGCCATTTTCTAAGCTTTC
258 CGCAAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTTTC
* * *
60813029 AGGGATTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTAAGCCCAACGACGCTGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGAGAAAGCACCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCT
* *
60813094 GAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGTTCAGGGCTTTAGCGAAGT
65 GAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGCTCAGGACTTTAGCGAAGT
* *
60813159 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTTCTGAGCTTCTGGGGATTT
130 TTTTGAGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCATTTTCTGAGCTTCTAGGGATTT
*
60813224 AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGATGTTTTTCAGAAAGCACCG
195 AGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAGCACCG
* * *
60813289 CAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTT
260 C-AAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTTTC
* * *
60813332 GGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
1 AGGGATTTAGCGGCGTTTTTGAGAAAGCACCGC
60813365 TAATGCTCAG
Statistics
Matches: 293, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
299 30 0.10
300 199 0.68
301 2 0.01
302 7 0.02
303 55 0.19
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (301 bp):
AGGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
AGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGCTCAGGACTTTAGCGAAGTT
TTTGAGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCATTTTCTGAGCTTCTAGGGATTTA
GCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAGCACCGC
AAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTTTC
Found at i:60813226 original size:114 final size:114
Alignment explanation
Indices: 60813027--60813948 Score: 1287
Period size: 114 Copynumber: 8.1 Consensus size: 114
60813017 TTCTAAGCTT
* * * * ** *
60813027 TCAGGGATTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTAAGCCCAACGACGCTGTTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
* * *
60813092 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGT
66 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* * *
60813141 TCAGGGCTTTAGCGAAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
*
60813206 CTGAGC-TTCTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGC
66 CTGAGCTTTC-GGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* * ** * **
60813255 TCAGGGATTTAGCGATGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGC--AAAAAAACCTAAGCCCAACGGTGCCGTT
*
60813320 TTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
64 TTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* * * * *
60813371 TCAGGACTTTAGAGGCATTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
* *
60813436 CTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCACCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* * * *
60813485 TTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCATTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
* *
60813550 CTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* *** **
60813599 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCATTGCAAAAAAACCTAAGCCCAACGACGCCGTTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
*
60813664 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACGCCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* *
60813713 TCAGTGCTTTAGC-AGCGTTTTTGGGAAAGCGCCGCAAAAAAA-CTAAGCCCAACAGTGCC-TTT
1 TCAGGGCTTTAGCGA-CGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTT
*
60813775 TTTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
65 TCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
* * * * *
60813825 TTAGGGCTTTAGCGGCATTTCTGGGAAAGCGCCACAAAAAAA-CTAAGCCCAACGGTGCCGTTTT
1 TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
* * *
60813889 TTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGTCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
*
60813938 TCAGGGATTTA
1 TCAGGGCTTTA
60813949 AAATAATTTA
Statistics
Matches: 724, Mismatches: 77, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
112 102 0.14
113 77 0.11
114 446 0.62
116 97 0.13
117 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (114 bp):
TCAGGGCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCGTTTT
CTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
Found at i:60813413 original size:530 final size:529
Alignment explanation
Indices: 60812497--60813592 Score: 1775
Period size: 530 Copynumber: 2.1 Consensus size: 529
60812487 GCCGCTAATG
* * * * **
60812497 TTCAGGGCTTTAGCTGAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGTGCCATTT
1 TTCAGGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTT
* * *
60812562 TCTGAGCTTTTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGA
66 TCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAACACCGCTAATGCTCAGGGATTTAGCGA
* * *
60812627 CGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTTCAGG
131 AGTTTTTCAGAAAGCACCGC-AAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCAGG
* * * * * *
60812692 GATTTAGCGGCGTTTTTAAGAAAGCGTCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGAGAAAG
195 GATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAG
** * *
60812757 TGCCGCAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTTTGGGATTTAGCGGCGTTTTT
260 CACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTT
60812822 AAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAAAAAAAACTA
325 AAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAAAAAAAACTA
*
60812887 AGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
390 AGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCACCGCTAA
60812952 TGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAAAAACTAAGCCCAACGGTGCCAT
455 TGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCAT
60813016 TTTCTAAGCT
520 TTTCTAAGCT
* * **
60813026 TTCAGGGATTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTAAGCCCAACGACGCTGTTT
1 TTCAGGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTT
* * *
60813091 TCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACACCGCTAATGTTCAGGGCTTTAGCGA
66 TCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAACACCGCTAATGCTCAGGGATTTAGCGA
* * ** *
60813156 AGTTTTTGAGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGGTGCCATTTTCTGAGC-TTCTGGG
131 AGTTTTTCAGAAAGCACCGCAAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTC-AGG
*
60813219 GATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGATGTTTTTCAGAAAG
195 GATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAG
60813284 CACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTT
260 CACCGC---AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTT
*
60813349 TTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGGAAAGCGCCGCAAAAAAAA
322 TTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAAAAAAAA
60813414 CTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCACCGC
387 CTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCACCGC
60813479 TAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGC
452 TAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGC
60813544 CATTTTCTAAGCT
517 CATTTTCTAAGCT
* *
60813557 TTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
1 TTCAGGGATTTAGCGGCGTTTTTGAGAAAGCACCGC
60813593 TAATGCTCAG
Statistics
Matches: 521, Mismatches: 41, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
526 3 0.01
527 96 0.18
529 131 0.25
530 223 0.43
531 68 0.13
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (529 bp):
TTCAGGGATTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTT
TCTGAGCTTTCGGGGATTTAGCGGCATTTTTAAGAAAACACCGCTAATGCTCAGGGATTTAGCGA
AGTTTTTCAGAAAGCACCGCAAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCAGGG
ATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGACGTTTTTCAGAAAGC
ACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGGGGATTTAGCGGCGTTTTTA
AGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAAAAAAAACTAA
GCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCACCGCTAAT
GCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCATT
TTCTAAGCT
Found at i:60813818 original size:643 final size:634
Alignment explanation
Indices: 60812488--60813699 Score: 1902
Period size: 643 Copynumber: 1.9 Consensus size: 634
60812478 TACGAAAGCG
* *
60812488 CCGCTAATGTTCAGGGCTTTAGCTGAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
1 CCGCTAATGTTCAGGGATTTAGCGGAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
*
60812553 GTGCCATTTTCTGAGCTTTTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGG
66 GTGCCATTTTCTGAGCTTCTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGG
*
60812618 ATTTAGCGACGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGA
131 ATTTAGCGACGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
* * * * *
60812683 GCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGTCGCTAATGCTTAGGGCTTTAGCGGCGTTT
196 GCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTT
* * **
60812748 TTGAGAAAGTGCCGCAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTTTGGGATTTAGC
261 TTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGC
*
60812813 GGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAA
326 GGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAA
* *
60812878 AAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAG
391 AAAAAACTAAGCCCAACGGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAG
* *
60812943 CGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACTAAGCCCAAC
456 CGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACTAAGCCCAAC
** **
60813008 GGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTGGGAAAGCACTGCAAAAAAACCTA
521 GACGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAA-CACTGC------ACCTA
** * *****
60813073 AGCCCAACGACGCTGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAACA
579 AGCCCAACGACGCTGTTAGC-GAGCTTTCGGGGA-TAAGCGGCAAAACTAAGAAAACA
* *
60813131 CCGCTAATGTTCAGGGCTTTAGCGAAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
1 CCGCTAATGTTCAGGGATTTAGCGGAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
60813196 GTGCCATTTTCTGAGCTTCTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGG
66 GTGCCATTTTCTGAGCTTCTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGG
*
60813261 ATTTAGCGATGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
131 ATTTAGCGACGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
**
60813326 GCTTTTGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTT
196 GCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTT
* *
60813391 TTGGGAAAGCGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAG
261 TTGAGAAAGCGCCGC-AAAAAAACTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAG
* * * * *
60813456 CGGCGTTTTTAAGAAAGCACCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCA
325 CGGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCA
60813521 AAAAAAACTAAGCCCAACGGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAA
390 AAAAAAACTAAGCCCAACGGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAA
**
60813586 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCATTGCAAAAAAACCTAAGCCCA
455 GCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAA-CTAAGCCCA
* * *
60813651 ACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
519 ACGACGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAA
60813700 ACGCCGCTAA
Statistics
Matches: 530, Mismatches: 37, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
643 261 0.49
644 218 0.41
645 51 0.10
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (634 bp):
CCGCTAATGTTCAGGGATTTAGCGGAGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACG
GTGCCATTTTCTGAGCTTCTGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGG
ATTTAGCGACGTTTTTCAGAAAGCACCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
GCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGACTTTAGAGGCATTT
TTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGATGCCGTTTTCTGAGCTTTCAGGGATTTAGC
GGCGTTTTTAAGAAAGCACCGCTAATGCTCAGGACTTTAGAGGCATTTTTGGAAAAGCGCCGCAA
AAAAAACTAAGCCCAACGGTGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAAG
CGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAAACTAAGCCCAAC
GACGCCATTTTCTAAGCTTTCAGGGATTTAGCGGCGTTTTTAAGAAACACTGCACCTAAGCCCAA
CGACGCTGTTAGCGAGCTTTCGGGGATAAGCGGCAAAACTAAGAAAACA
Found at i:60814207 original size:37 final size:37
Alignment explanation
Indices: 60814166--60814253 Score: 142
Period size: 37 Copynumber: 2.4 Consensus size: 37
60814156 GGATTTAAGG
*
60814166 TTTAGGGGTTAGGTGTTATGCTTT-AGGGTTAGGGGGA
1 TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTA-GGGGA
*
60814203 TTTAGGGGTCAGGGGTTATGCTTTAAGGGTTAGGGGA
1 TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTAGGGGA
60814240 TTTAGGGGTTAGGG
1 TTTAGGGGTTAGGG
60814254 TTTAGGGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
37 40 0.85
38 7 0.15
ACGTcount: A:0.17, C:0.03, G:0.44, T:0.35
Consensus pattern (37 bp):
TTTAGGGGTTAGGGGTTATGCTTTAAGGGTTAGGGGA
Found at i:60814248 original size:16 final size:16
Alignment explanation
Indices: 60814187--60814253 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 16
60814177 GGTGTTATGC
60814187 TTTA-GGGTTAGGGGGA
1 TTTAGGGGTTA-GGGGA
*
60814203 TTTAGGGGTCAGGGGTTA
1 TTTAGGGGTTAGGGG--A
*
60814221 TGCTTTAAGGGTTAGGGGA
1 ---TTTAGGGGTTAGGGGA
60814240 TTTAGGGGTTAGGG
1 TTTAGGGGTTAGGG
60814254 TTTAGGGTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
16 21 0.51
17 5 0.12
18 1 0.02
19 1 0.02
21 13 0.32
ACGTcount: A:0.18, C:0.03, G:0.46, T:0.33
Consensus pattern (16 bp):
TTTAGGGGTTAGGGGA
Found at i:60814272 original size:38 final size:37
Alignment explanation
Indices: 60814166--60814273 Score: 110
Period size: 37 Copynumber: 2.9 Consensus size: 37
60814156 GGATTTAAGG
* * * *
60814166 TTTAGGGGTTAGGTGTTATGCTTT-AGGGTTAGGGGGA
1 TTTAGGGGTCAGGGGTTAGGCTTTAACGGTTA-GGGGA
* *
60814203 TTTAGGGGTCAGGGGTTATGCTTTAAGGGTTAGGGGA
1 TTTAGGGGTCAGGGGTTAGGCTTTAACGGTTAGGGGA
* * *
60814240 TTTAGGGGTTAGGGTTTAGGGTTTCAACGGTTAG
1 TTTAGGGGTCAGGGGTTAGGCTTT-AACGGTTAG
60814274 ATTAGAGTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
37 47 0.76
38 15 0.24
ACGTcount: A:0.18, C:0.05, G:0.42, T:0.36
Consensus pattern (37 bp):
TTTAGGGGTCAGGGGTTAGGCTTTAACGGTTAGGGGA
Found at i:60816498 original size:41 final size:39
Alignment explanation
Indices: 60816221--60816498 Score: 295
Period size: 41 Copynumber: 6.8 Consensus size: 39
60816211 GGATTTTGTG
60816221 GCGTTTTTTAAAAAGCGCCGCTAATGCTCAAGGTTTTAGC
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTC-AGGTTTTAGC
** * *
60816261 AGCGTTTTTTGTAAAGCGCCGCTAATGCTCAGTTATTTAAC
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGT-TTTAGC
* *
60816302 AGCGTTTTTTAAAATGCGCCGCTAATGCTAAGGGTTTTAGC
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCA-GGTTTTAGC
* * * *
60816343 GGCGTTTTTTAAAAAGCGCCACTAGTGATCGGGTCTTTAGC
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGT-TTTAGC
* * *
60816384 GACGTTTTTGAAAAAGCACCGCTAATGCTCAGGGTATTAGC
1 G-CGTTTTTTAAAAAGCGCCGCTAATGCTCA-GGTTTTAGC
* *
60816425 GACGTTTTTTAGAAAGCGCCGCTAATGATCAGGTCTTTAGC
1 G-CGTTTTTTAAAAAGCGCCGCTAATGCTCAGGT-TTTAGC
* *
60816466 TGCATTTTTAAAAAAGCGCCGCTAATGCTCAGG
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGG
60816499 GCAATAGTGG
Statistics
Matches: 197, Mismatches: 33, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
40 10 0.05
41 181 0.92
42 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (39 bp):
GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGTTTTAGC
Found at i:60816515 original size:82 final size:81
Alignment explanation
Indices: 60816221--60816499 Score: 344
Period size: 82 Copynumber: 3.4 Consensus size: 81
60816211 GGATTTTGTG
* * *
60816221 GCGTTTTTTAAAAAGCGCCGCTAATGCTCAAGGTTTTAGCAGCGTTTTTT-GTAAAGCGCCGCTA
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTATTAGCGGCGTTTTTTAG-AAAGCGCCGCTA
* * * *
60816285 ATGCTCAGTTATTTAAC
65 ATGATCAGGTCTTTAGC
* * * * *
60816302 AGCGTTTTTTAAAATGCGCCGCTAATGCTAAGGGTTTTAGCGGCGTTTTTTAAAAAGCGCCACTA
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTA
* *
60816367 GTGATCGGGTCTTTAGC
65 ATGATCAGGTCTTTAGC
* * *
60816384 GACGTTTTTGAAAAAGCACCGCTAATGCTCAGGGTATTAGCGACGTTTTTTAGAAAGCGCCGCTA
1 G-CGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTA
60816449 ATGATCAGGTCTTTAGC
65 ATGATCAGGTCTTTAGC
* *
60816466 TGCATTTTTAAAAAAGCGCCGCTAATGCTCAGGG
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGG
60816500 CAATAGTGGC
Statistics
Matches: 169, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
81 1 0.01
82 167 0.99
83 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (81 bp):
GCGTTTTTTAAAAAGCGCCGCTAATGCTCAGGGTATTAGCGGCGTTTTTTAGAAAGCGCCGCTAA
TGATCAGGTCTTTAGC
Found at i:60817397 original size:7 final size:8
Alignment explanation
Indices: 60817371--60817396 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
60817361 TTACTTGTCA
60817371 TTTCTGAT
1 TTTCTGAT
60817379 TTTCTGAT
1 TTTCTGAT
60817387 TTTCTGAT
1 TTTCTGAT
60817395 TT
1 TT
60817397 CAGTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (8 bp):
TTTCTGAT
Found at i:60818665 original size:20 final size:21
Alignment explanation
Indices: 60818629--60818668 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60818619 ATATATCTCA
*
60818629 TTTTAACATATATAAAATAAT
1 TTTTAACAAATATAAAATAAT
60818650 TTTTAACAAATA-AAAATAA
1 TTTTAACAAATATAAAATAA
60818669 ATAAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
TTTTAACAAATATAAAATAAT
Found at i:60819669 original size:16 final size:16
Alignment explanation
Indices: 60819648--60819678 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
60819638 TGTAACCTAT
60819648 CTGATGTTTACAATAA
1 CTGATGTTTACAATAA
60819664 CTGATGTTTACAATA
1 CTGATGTTTACAATA
60819679 GTTTGGGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (16 bp):
CTGATGTTTACAATAA
Found at i:60820812 original size:44 final size:44
Alignment explanation
Indices: 60820759--60820896 Score: 170
Period size: 44 Copynumber: 3.2 Consensus size: 44
60820749 GTTTTATAGA
* ** *
60820759 GGCGTTTGTGGCAAAAAGCGTCATTAAAGATCATGACCTTTAGC
1 GGCGTTTGTGGCAAAAAGCGCCGCTAAAGATCATGATCTTTAGC
** * **
60820803 GGCGTTTGTGATAAAAAGCGCCGCTAAAGCTTGTGATCTTTAGC
1 GGCGTTTGTGGCAAAAAGCGCCGCTAAAGATCATGATCTTTAGC
* *
60820847 GGCGTTTATGGC-AAAAGCGCCGCTAAAGACCATGATCTTTAGC
1 GGCGTTTGTGGCAAAAAGCGCCGCTAAAGATCATGATCTTTAGC
60820890 GGCGTTT
1 GGCGTTT
60820897 TTTCACATAA
Statistics
Matches: 78, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
43 34 0.44
44 44 0.56
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (44 bp):
GGCGTTTGTGGCAAAAAGCGCCGCTAAAGATCATGATCTTTAGC
Found at i:60820828 original size:87 final size:86
Alignment explanation
Indices: 60820731--60820896 Score: 210
Period size: 87 Copynumber: 1.9 Consensus size: 86
60820721 TTTTTGCGAG
* * * *
60820731 AAGCGACGCTAAAGGCTTGT-T-TTATAGAGGCGTTTGTGGCAAAAAGCGTCATTAAAGATCATG
1 AAGCGACGCTAAA-GCTTGTATCTT-TAGAGGCGTTTATGGC-AAAAGCGCCACTAAAGACCATG
60820794 ACCTTTAGCGGCGTTTGTGATAAA
63 ACCTTTAGCGGCGTTTGTGATAAA
* * * *
60820818 AAGCGCCGCTAAAGCTTGTGATCTTTAGCGGCGTTTATGGCAAAAGCGCCGCTAAAGACCATGAT
1 AAGCGACGCTAAAGCTTGT-ATCTTTAGAGGCGTTTATGGCAAAAGCGCCACTAAAGACCATGAC
60820883 CTTTAGCGGCGTTT
65 CTTTAGCGGCGTTT
60820897 TTTCACATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 6 0.09
87 45 0.66
88 15 0.22
89 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (86 bp):
AAGCGACGCTAAAGCTTGTATCTTTAGAGGCGTTTATGGCAAAAGCGCCACTAAAGACCATGACC
TTTAGCGGCGTTTGTGATAAA
Found at i:60820916 original size:87 final size:88
Alignment explanation
Indices: 60820759--60820918 Score: 198
Period size: 87 Copynumber: 1.8 Consensus size: 88
60820749 GTTTTATAGA
* * * * * *
60820759 GGCGTTTGTGGCAAAAAGCGTCATTAAAGATCATGACCTTTAGCGGCGTTTGTGATAAAAAGCGC
1 GGCGTTTATGGCAAAAAGCGCCACTAAAGACCATGACCTTTAGCGGCGTTTGTCACAAAAAGCGC
60820824 CGCTAAAGCTTGTGATCTTTAGC
66 CGCTAAAGCTTGTGATCTTTAGC
* * * *
60820847 GGCGTTTATGGC-AAAAGCGCCGCTAAAGACCATGATCTTTAGCGGCGTTTTTTCACATAAA-CG
1 GGCGTTTATGGCAAAAAGCGCCACTAAAGACCATGACCTTTAGCGGCG-TTTGTCACAAAAAGCG
*
60820910 CTGCTAAAG
65 CCGCTAAAG
60820919 TTAGCGACGC
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
87 40 0.67
88 20 0.33
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (88 bp):
GGCGTTTATGGCAAAAAGCGCCACTAAAGACCATGACCTTTAGCGGCGTTTGTCACAAAAAGCGC
CGCTAAAGCTTGTGATCTTTAGC
Found at i:60822556 original size:95 final size:94
Alignment explanation
Indices: 60822393--60822586 Score: 361
Period size: 95 Copynumber: 2.1 Consensus size: 94
60822383 ACCACTTGTT
60822393 AGGATCGTCCCGATTAAGCAACAAACAAGTAAAAATAGCAGAAGAAATTAAGAAGATGAACACAC
1 AGGATCGTCCCGATTAAGCAACAAACAAGTAAAAATAGCAGAAGAAATTAAGAAGATGAACACAC
60822458 AAATTTAACGTGAAAAAACCCCTCCAAAG
66 AAATTTAACGTGAAAAAACCCCTCCAAAG
60822487 AAGGATCGTCCCGATTAAGCAACAAACAAGTAAAAATAGCAGAAGAAATTAAGAAGATGAACACA
1 -AGGATCGTCCCGATTAAGCAACAAACAAGTAAAAATAGCAGAAGAAATTAAGAAGATGAACACA
* *
60822552 CAAATTTAACGTGGAAAAACTCCTCCAAAG
65 CAAATTTAACGTGAAAAAACCCCTCCAAAG
60822582 AGGAT
1 AGGAT
60822587 AAAAAACCAC
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
94 5 0.05
95 92 0.95
ACGTcount: A:0.49, C:0.18, G:0.17, T:0.15
Consensus pattern (94 bp):
AGGATCGTCCCGATTAAGCAACAAACAAGTAAAAATAGCAGAAGAAATTAAGAAGATGAACACAC
AAATTTAACGTGAAAAAACCCCTCCAAAG
Found at i:60823434 original size:5 final size:5
Alignment explanation
Indices: 60823424--60823459 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
60823414 TTTAAATTTG
*
60823424 AAAAT AAAAT AAAAT AAAAT AAAAT AGAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
60823460 CAAACCAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:60825966 original size:43 final size:43
Alignment explanation
Indices: 60825900--60826141 Score: 294
Period size: 43 Copynumber: 5.7 Consensus size: 43
60825890 TAATTTTTTT
* ** *
60825900 CTAAAAGTCATG-T-TTTAGCGGCGTTTGTAATAGAAGCGCTG
1 CTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCCG
60825941 CTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCCG
1 CTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCCG
* * * *
60825984 CTAAAGGTCATGATTTTTAGTGGCGTTTTGTGGTAAAAGTGCCG
1 CTAAAGGTCATGATCTTTAGCGGCG-TTTGTGGTAGAAGCGCCG
* * * *
60826028 CTAAAGGCCATGATCTTTAGCGGCGCTTT-TGGTAGAAGTGTCA
1 CTAAAGGTCATGATCTTTAGCGGCG-TTTGTGGTAGAAGCGCCG
*
60826071 CTAAAGGCCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCCAG
1 CTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCC-G
* *
60826115 -TAAAGATCATGATCTTTAGCAGCGTTT
1 CTAAAGGTCATGATCTTTAGCGGCGTTT
60826142 TTCAGATAAA
Statistics
Matches: 175, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
41 11 0.06
42 4 0.02
43 119 0.68
44 41 0.23
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
CTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGAAGCGCCG
Found at i:60826043 original size:87 final size:86
Alignment explanation
Indices: 60825913--60826142 Score: 277
Period size: 87 Copynumber: 2.7 Consensus size: 86
60825903 AAAGTCATGT
** * *
60825913 TTTAGCGGCGTTTGTAATAGAAGCG-CTGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAGA
1 TTTAGCGGCGTTTGTGGTAAAAGCGCCAGCTAAAGGTCATGATCTTTAGCGGCGTTT-TGGTAGA
* * *
60825977 AGCGCCGCTAAAGGTCATGATT
65 AGCGCCACTAAAGGCCATGATC
* * *
60825999 TTTAGTGGCGTTTTGTGGTAAAAGTGCC-GCTAAAGGCCATGATCTTTAGCGGCGCTTTTGGTAG
1 TTTAGCGGCG-TTTGTGGTAAAAGCGCCAGCTAAAGGTCATGATCTTTAGCGGCG-TTTTGGTAG
* *
60826063 AAGTGTCACTAAAGGCCATGATC
64 AAGCGCCACTAAAGGCCATGATC
* * *
60826086 TTTAGCGGCGTTTGTGGTAGAAGCGCCAG-TAAAGATCATGATCTTTAGCAGCGTTTT
1 TTTAGCGGCGTTTGTGGTAAAAGCGCCAGCTAAAGGTCATGATCTTTAGCGGCGTTTT
60826143 TCAGATAAAC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
85 4 0.03
86 45 0.37
87 70 0.57
88 4 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTGGTAAAAGCGCCAGCTAAAGGTCATGATCTTTAGCGGCGTTTTGGTAGAA
GCGCCACTAAAGGCCATGATC
Found at i:60829615 original size:20 final size:21
Alignment explanation
Indices: 60829593--60829642 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 21
60829583 TTCCATGTGC
60829593 TTTCCATTT-TTTCTTCTTTCT
1 TTTCCATTTCTTT-TTCTTTCT
60829614 TTTCC-TTTCTTTTTCTTTCT
1 TTTCCATTTCTTTTTCTTTCT
60829634 TTTCCATTT
1 TTTCCATTT
60829643 GATTTGCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTCCATTTCTTTTTCTTTCT
Found at i:60829623 original size:10 final size:10
Alignment explanation
Indices: 60829608--60829638 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
60829598 ATTTTTTCTT
60829608 CTTTCTTTTC
1 CTTTCTTTTC
*
60829618 CTTTCTTTTT
1 CTTTCTTTTC
60829628 CTTTCTTTTC
1 CTTTCTTTTC
60829638 C
1 C
60829639 ATTTGATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (10 bp):
CTTTCTTTTC
Found at i:60832617 original size:10 final size:9
Alignment explanation
Indices: 60832585--60832666 Score: 58
Period size: 10 Copynumber: 8.7 Consensus size: 9
60832575 ATAAACTTAA
*
60832585 AAAAATTGT
1 AAAAATTCT
60832594 -AAAATTCATT
1 AAAAATTC--T
60832604 AAAAATTCT
1 AAAAATTCT
60832613 AAAAATATCT
1 AAAAAT-TCT
* *
60832623 AAATATTAT
1 AAAAATTCT
*
60832632 AAAAACTTAT
1 AAAAA-TTCT
*
60832642 AAAAATTCA
1 AAAAATTCT
*
60832651 AATAAATTAT
1 AA-AAATTCT
60832661 AAAAAT
1 AAAAAT
60832667 AGAATTAGGG
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
8 6 0.10
9 21 0.36
10 25 0.42
11 7 0.12
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAAATTCT
Found at i:60832625 original size:19 final size:18
Alignment explanation
Indices: 60832585--60832649 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 18
60832575 ATAAACTTAA
* *
60832585 AAAAATTGTAAAATTCATT
1 AAAAATTCTAAAAAT-ATT
60832604 AAAAATTCTAAAAATATCT
1 AAAAATTCTAAAAATAT-T
* *
60832623 AAATATTATAAAAACT-TAT
1 AAAAATTCTAAAAA-TAT-T
60832642 AAAAATTC
1 AAAAATTC
60832650 AAATAAATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 2 0.05
19 34 0.92
20 1 0.03
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATTCTAAAAATATT
Found at i:60832636 original size:29 final size:28
Alignment explanation
Indices: 60832604--60832665 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 28
60832594 AAAATTCATT
*
60832604 AAAAATTCTAAAAATATCTAAAT-ATTATA
1 AAAAATTATAAAAAT-TC-AAATAATTATA
*
60832633 AAAACTTATAAAAATTCAAATAAATTATA
1 AAAAATTATAAAAATTCAAAT-AATTATA
60832662 AAAA
1 AAAA
60832666 TAGAATTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.14
28 2 0.07
29 23 0.79
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (28 bp):
AAAAATTATAAAAATTCAAATAATTATA
Found at i:60837610 original size:15 final size:16
Alignment explanation
Indices: 60837580--60837613 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
60837570 AAAATTTAAT
60837580 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
60837596 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
60837611 TTT
1 TTT
60837614 TTAAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:60839195 original size:3 final size:3
Alignment explanation
Indices: 60839187--60839215 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
60839177 AATTTAGTCA
60839187 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
60839216 AATAACTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:60839308 original size:6 final size:6
Alignment explanation
Indices: 60839297--60839323 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
60839287 TATTTATTTA
60839297 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
60839324 TAACTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:60839734 original size:16 final size:16
Alignment explanation
Indices: 60839713--60839753 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
60839703 TTGATTTATA
*
60839713 TATATATACTTAT-TTT
1 TATATATA-TTATAATT
60839729 TATATATATTATAATT
1 TATATATATTATAATT
60839745 TATATATAT
1 TATATATAT
60839754 ACATATATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
TATATATATTATAATT
Found at i:60839745 original size:18 final size:20
Alignment explanation
Indices: 60839707--60839754 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
60839697 ATATCTTTGA
*
60839707 TTTATATATATATACTTATT
1 TTTATATATATATACTAATT
60839727 TTTATATATAT-TA-TAATT
1 TTTATATATATATACTAATT
*
60839745 TATATATATA
1 TTTATATATA
60839755 CATATATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 13 0.50
19 2 0.08
20 11 0.42
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTATATATATATACTAATT
Found at i:60839767 original size:18 final size:18
Alignment explanation
Indices: 60839711--60839779 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 18
60839701 CTTTGATTTA
* *
60839711 TATATATATACTTATTTT
1 TATATATATACATATATT
*
60839729 TATATATAT-TATA-ATT
1 TATATATATACATATATT
60839745 TATATATATACATATATT
1 TATATATATACATATATT
*
60839763 CATATCTATATACATAT
1 --TATATATATACATAT
60839780 TTTCTAAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
16 11 0.26
17 5 0.12
18 12 0.29
20 14 0.33
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (18 bp):
TATATATATACATATATT
Found at i:60839813 original size:18 final size:18
Alignment explanation
Indices: 60839790--60839825 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60839780 TTTCTAAATT
*
60839790 TTTATAAGTATATACATA
1 TTTATAAGTACATACATA
*
60839808 TTTATATGTACATACATA
1 TTTATAAGTACATACATA
60839826 CTTACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTATAAGTACATACATA
Found at i:60840049 original size:4 final size:4
Alignment explanation
Indices: 60840042--60840072 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
60840032 TATTTATTTA
60840042 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
60840073 TTGCTCGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTTG
Found at i:60842468 original size:70 final size:70
Alignment explanation
Indices: 60842355--60842493 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
60842345 TTCCAGTCAT
* *
60842355 TTATTTTATTCAAAATATCCTGATTCCTAAAGTACTTGCATGTCCATTTGCTCCCTAAACCATTC
1 TTATTTTATTCAAAATATCCAGATTCATAAAGTACTTGCATGTCCATTTGCTCCCTAAACCATTC
60842420 AACAA
66 AACAA
* *
60842425 TTATTTTATTCAAAATATCCAGGTTCATAAAGTACTTGTATGTCCATTTGCTCCCTAAACCATTC
1 TTATTTTATTCAAAATATCCAGATTCATAAAGTACTTGCATGTCCATTTGCTCCCTAAACCATTC
60842490 AACA
66 AACA
60842494 CTTCTTTATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (70 bp):
TTATTTTATTCAAAATATCCAGATTCATAAAGTACTTGCATGTCCATTTGCTCCCTAAACCATTC
AACAA
Found at i:60843040 original size:21 final size:21
Alignment explanation
Indices: 60843014--60843055 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
60843004 TACGCTCAGC
60843014 TATCAATATATACCTTACTGA
1 TATCAATATATACCTTACTGA
60843035 TATCAATATATACCTTACTGA
1 TATCAATATATACCTTACTGA
60843056 ACCTGGAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (21 bp):
TATCAATATATACCTTACTGA
Found at i:60843143 original size:20 final size:20
Alignment explanation
Indices: 60843118--60843159 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
60843108 TTGGCCATAT
60843118 GACCAACAACCTTATTTTGA
1 GACCAACAACCTTATTTTGA
60843138 GACCAACAACCTTATTTTGA
1 GACCAACAACCTTATTTTGA
60843158 GA
1 GA
60843160 TCTCGGAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.29
Consensus pattern (20 bp):
GACCAACAACCTTATTTTGA
Found at i:60845314 original size:18 final size:19
Alignment explanation
Indices: 60845266--60845314 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
60845256 ACTTAAGTGC
* *
60845266 TTTAATTTTTATTTGTTTA
1 TTTACTTTTTATTTGTTGA
*
60845285 TTTAC-TTATATTTGTTGA
1 TTTACTTTTTATTTGTTGA
60845303 TTT-CTTTTTATT
1 TTTACTTTTTATT
60845315 ATATATTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.18, C:0.04, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTACTTTTTATTTGTTGA
Found at i:60849322 original size:11 final size:11
Alignment explanation
Indices: 60849306--60849334 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
60849296 ACAAACAAAC
60849306 GAAAAGAAAAA
1 GAAAAGAAAAA
60849317 GAAAAG-AAAA
1 GAAAAGAAAAA
60849327 GAAAAGAA
1 GAAAAGAA
60849335 GAATGGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:60849807 original size:97 final size:100
Alignment explanation
Indices: 60849641--60849939 Score: 379
Period size: 97 Copynumber: 2.9 Consensus size: 100
60849631 ATTCATTTCG
* * * *
60849641 TATCTTAGCAAAATTTGTTATCTTAATTAATTTATTCATTTCGAGCTGTGCTCTCAATAAATTTT
1 TATCTTAGCAAAATTTGTTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATTT
*
60849706 CATCTTATCCATTGTGATAATCTTTTTCA-TC-T-
66 CATCTTGTCCATTGTGATAATCTTTTTCATTCGTC
* *
60849738 TATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAAAAAAATTT
1 TATCTTAGCAAAATTTGTTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATTT
*
60849803 CATCTTGTCCATTGTGATAACCCTTTTCATCTTATTCGGTTC
66 CATCTTGTCCATTGTGATAA-TCTTTT--TC--ATTC-G-TC
* * * *
60849845 GTATCTTAGCAAAATTTGTTATTTTGATTAATTTATTCATTTTGAGCCTTATTCTCAATAAAATT
1 -TATCTTAGCAAAATTTGTTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATT
* *
60849910 TCATCTTGTCCATTTTGATAATTTTTTTCA
65 TCATCTTGTCCATTGTGATAATCTTTTTCA
60849940 AGTATTTTTC
Statistics
Matches: 174, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
97 78 0.45
98 5 0.03
100 2 0.01
102 1 0.01
103 3 0.02
105 2 0.01
106 1 0.01
107 4 0.02
108 78 0.45
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.48
Consensus pattern (100 bp):
TATCTTAGCAAAATTTGTTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATTT
CATCTTGTCCATTGTGATAATCTTTTTCATTCGTC
Found at i:60850882 original size:46 final size:46
Alignment explanation
Indices: 60850832--60852274 Score: 2003
Period size: 46 Copynumber: 31.2 Consensus size: 46
60850822 TAAAAGAAGT
60850832 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60850878 AGATCTTGTCTTCTTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60850924 AGATCTTGTCTTCTTGTATTTGGCAGCAGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60850970 AGATCTTGTCTTCTTGTATTTGGCA-CGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851015 AGATCTTGTCTTCTTGTATTTGACAACGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851061 AGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCAAAGGTAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851107 AGGTCTTGTTTTCCTGTATTTGGCAGCGAAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851153 AGCTCTTGTCTTCTTGTATTTGGCAGCAGAGGAGATCGAAGATAG-
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851198 ATGATCTTGTCTTCCTGTATTTGGTAGCAGAGGAGATCGAAGATAGC
1 A-GATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851245 AGATCTTGTCTTCCTATATTTGGCAGCGAAGGAGATCAAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * * *
60851291 AGACCTTATCTTCCTGTATTTGGTAGTGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60851337 AAATCTTGTCTTCCTGTATTTGGCA-CGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851382 AGATCTTGTCTTCCTGTATTTGACAACAGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60851428 AGATCTTGTCTACCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851474 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGAAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * *
60851520 AGATCTTGTCTTCCTGTATTTGACAGCGGAAGAGATCAAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851566 AGATCTTGTCTTCCTGTATTTGGCAGTGGAGGAGATCAAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * * *
60851612 AGATCTTGTCTTCCTGTATTTGGCAGTGAAAGAGATCGAAGATACC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* ** * * *
60851658 AGATCTTATCTTCCTGTATTTGGCAGCAAAAGAGATCAAAGATAGA
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851704 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCAAAGATAGA
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* ** *
60851750 AGATCTTGTCTTCCTATATTTGGCAGAAGAGGAGATCGAAAATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60851796 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCAAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851842 AGATCTTGTCTTCCTGTATTTGTCAGCGGAAGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851888 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCGAAGATAGA
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* *
60851934 AGATCTTGTCTTCCTATATTTGGCAGTGGAGGAGATCGAAGATCAAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC---G----AAGATAGC
* * * *
60851987 AAATCTTGTCTTTCTATATTTGGCAGCGGAGGAGATCGAATATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * * *
60852033 AGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGATGGA
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
** * * *
60852079 AGATCTTGTCTTCCTGTATTTGGCAATGGAGTAGAACGAAGATAGA
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * **
60852125 AGATCTTGTCTTCCTGTATTTGGGCAGTGGAGTAGAGT-GAAGATAAA
1 AGATCTTGTCTTCCTGTATTT-GGCAGCGGAGGAGA-TCGAAGATAGC
* * *
60852172 AGATCTTGCCTTCCTGTATTTGACAGCGGAAGAGATCGAAGATAGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
* * * *
60852218 AGATCTTGTCTTCCTGTATTTGGCAGTGAAGTAGATCGAAGATTGC
1 AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
*
60852264 AGATCCTGTCT
1 AGATCTTGTCT
60852275 CCCTAAGCAG
Statistics
Matches: 1255, Mismatches: 128, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
45 87 0.07
46 1083 0.86
47 42 0.03
49 1 0.00
50 1 0.00
53 41 0.03
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (46 bp):
AGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGC
Found at i:60854426 original size:18 final size:19
Alignment explanation
Indices: 60854381--60854429 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
60854371 ACTTAAGTGC
* *
60854381 TTTAATTTTTATTTGTTTA
1 TTTACTTTTTATTTGTTGA
60854400 TTTAC-TTTTATTTGTTGA
1 TTTACTTTTTATTTGTTGA
60854418 TTT-CTTTTTATT
1 TTTACTTTTTATT
60854430 ATATATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 1 0.04
18 22 0.81
19 4 0.15
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.73
Consensus pattern (19 bp):
TTTACTTTTTATTTGTTGA
Found at i:60859300 original size:97 final size:98
Alignment explanation
Indices: 60859119--60859431 Score: 396
Period size: 97 Copynumber: 3.1 Consensus size: 98
60859109 ACCTGTTTCC
* * * *
60859119 ATCTTATTCATTTCGTATCTTAGCAAAATTTGCTATCTTAATTAATTTATTCATTTCGAGCTGTG
1 ATCTTTTTCA-TTCGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGCTTTG
* *
60859184 CTCTCAATAAAATTTCATCTTATCCATTGTGATA
65 TTCTCAATAAAATTTCATCTTGTCCATTGTGATA
*
60859218 ATCTTTTTCA-TCTTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGCTTTGT
1 ATCTTTTTCATTCGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGCTTTGT
60859282 TCTCAATAAAATTTCATCTTGTCCA-TGTGATA
66 TCTCAATAAAATTTCATCTTGTCCATTGTGATA
* *
60859314 ACCCTTTTCATCTTATTCGATTCGTATCTTAGCAAAATTTGTTATTTTGATTAATTTATTCATTT
1 A------TC-T-TT-TTC-ATTCGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTT
* * * *
60859379 TGAGCCTTATTCTCAATAAAATTTCATCTTGCCCATTTTGATA
56 TGAGCTTTGTTCTCAATAAAATTTCATCTTGTCCATTGTGATA
60859422 ATCTTTTTCA
1 ATCTTTTTCA
60859432 AGCATTTTTC
Statistics
Matches: 188, Mismatches: 14, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
96 8 0.04
97 73 0.39
98 1 0.01
99 12 0.06
100 2 0.01
101 1 0.01
102 4 0.02
103 1 0.01
104 2 0.01
105 3 0.02
106 1 0.01
107 73 0.39
108 7 0.04
ACGTcount: A:0.27, C:0.17, G:0.09, T:0.48
Consensus pattern (98 bp):
ATCTTTTTCATTCGTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGCTTTGT
TCTCAATAAAATTTCATCTTGTCCATTGTGATA
Found at i:60860389 original size:46 final size:46
Alignment explanation
Indices: 60860317--60861209 Score: 1196
Period size: 46 Copynumber: 19.4 Consensus size: 46
60860307 AATGGACTAA
* *
60860317 AAGA-AGCAGATCTTGTCTTCCTGTATTTGGTAGCGAAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * *
60860362 AAGATAGCAGATCTTTTCTTCCGGTATTTGGCAACGG-GAGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATCG
*
60860408 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* *
60860454 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCATCGGAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* ** *
60860500 AAGATAGAAGATCTTGTCTTCCTGTATTTGGCAGCAAAAGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
** **
60860546 AAGATAATAGATCTTGTCTTTTTGTATTTGGCAGCGGAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * * * *
60860592 AAGATAGAAGAACTTGTCTTCCTGTATTTAGCAGCGAAGGAGATTG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * ** **
60860638 AAGATAGCAGATCTTGTCTTCATGTATTTGGAAGTAGAATAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* *
60860684 AAGATAGCACATCTTGTCTTCCTGTATTTTGCAGCGGAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * **
60860730 AAGATAGCAGATCTTGTCTTCCTGTATTTGGTAGCGAAGGAGATTA
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
** *
60860776 AAGATATAAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGATATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * *
60860822 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATTG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * *
60860868 AAGATAGCAGATCTTGTCTTCCTGTATTTCGCAGCGGAGTAGATTG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
*
60860914 AAGATAGCAGATCTTGTCTTTCTGTATTTGGCAGCGGAGGAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * *
60860960 AAGATAGCAGATTTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * * *
60861006 AAGATGGAAGATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * **
60861052 AAGATAGAAGATCTTGTCTTCCTGTATTTGGGCAGTGGAGTTGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTT-GGCAGCGGAGGAGATCG
* * *
60861099 AAGATAGAAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGACCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* * *
60861145 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
* *
60861191 AAGATTGCAGATCCTGTCT
1 AAGATAGCAGATCTTGTCT
60861210 CCCTAAGCAG
Statistics
Matches: 747, Mismatches: 97, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
45 5 0.01
46 696 0.93
47 46 0.06
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (46 bp):
AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
Found at i:60863200 original size:18 final size:19
Alignment explanation
Indices: 60863152--60863200 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
60863142 ACTTAAGTGC
* *
60863152 TTTAATTTTTATTTGTTTA
1 TTTACTTTTTATTTGTTGA
*
60863171 TTTAC-TTATATTTGTTGA
1 TTTACTTTTTATTTGTTGA
60863189 TTT-CTTTTTATT
1 TTTACTTTTTATT
60863201 ATATATTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.18, C:0.04, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTACTTTTTATTTGTTGA
Found at i:60867596 original size:16 final size:16
Alignment explanation
Indices: 60867567--60867600 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60867557 AGAATGTAAA
*
60867567 AAAAACAAATGAAAAG
1 AAAAACAAAAGAAAAG
*
60867583 AAAAAGAAAAGAAAAG
1 AAAAACAAAAGAAAAG
60867599 AA
1 AA
60867601 GAATGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAACAAAAGAAAAG
Done.