Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 198 of 208
Found at i:61346454 original size:23 final size:24
Alignment explanation
Indices: 61346428--61346481 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
61346418 TCTTTTAAGA
61346428 GTTTAAGTCTGCCGTA-TTGGCAC
1 GTTTAAGTCTGCCGTATTTGGCAC
**
61346451 GTTTCTTTGTCTGCCGTATTTTGGCAC
1 G-TT-TAAGTCTGCCGTA-TTTGGCAC
61346478 GTTT
1 GTTT
61346482 CTTTATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 1 0.04
24 2 0.08
25 12 0.48
26 2 0.08
27 8 0.32
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.44
Consensus pattern (24 bp):
GTTTAAGTCTGCCGTATTTGGCAC
Found at i:61346462 original size:25 final size:26
Alignment explanation
Indices: 61346434--61346485 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
61346424 AAGAGTTTAA
61346434 GTCTGCCGTA-TTGGCACGTTTCTTT
1 GTCTGCCGTATTTGGCACGTTTCTTT
61346459 GTCTGCCGTATTTTGGCACGTTTCTTT
1 GTCTGCCGTA-TTTGGCACGTTTCTTT
61346486 ATTTTTCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 10 0.40
27 15 0.60
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (26 bp):
GTCTGCCGTATTTGGCACGTTTCTTT
Found at i:61355009 original size:34 final size:34
Alignment explanation
Indices: 61354966--61355035 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
61354956 TTGCTAGGAG
61354966 GTATGAAAATGACTTGTCTTTAAGTTTTACACTT
1 GTATGAAAATGACTTGTCTTTAAGTTTTACACTT
61355000 GTATGAAAATGACTTGTCTTTAAGTTTTACACTT
1 GTATGAAAATGACTTGTCTTTAAGTTTTACACTT
61355034 GT
1 GT
61355036 TGCTCGAGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (34 bp):
GTATGAAAATGACTTGTCTTTAAGTTTTACACTT
Found at i:61359249 original size:13 final size:13
Alignment explanation
Indices: 61359231--61359257 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61359221 TATATAAATA
61359231 TTTAAAAAATTAT
1 TTTAAAAAATTAT
61359244 TTTAAAAAATTAT
1 TTTAAAAAATTAT
61359257 T
1 T
61359258 AATTGAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTAAAAAATTAT
Found at i:61363446 original size:22 final size:21
Alignment explanation
Indices: 61363421--61363463 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
61363411 ACATTTTTTC
*
61363421 TCAAAATTATTTAAAAATAAAA
1 TCAAAATT-TATAAAAATAAAA
* *
61363443 TCAATATTTATAAAGATAAAA
1 TCAAAATTTATAAAAATAAAA
61363464 AATATTTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
TCAAAATTTATAAAAATAAAA
Found at i:61363467 original size:19 final size:17
Alignment explanation
Indices: 61363423--61363470 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
61363413 ATTTTTTCTC
*
61363423 AAAATTATTTAAAAATA
1 AAAAATATTTAAAAATA
61363440 AAATCAATATTTATAAAGATA
1 AAA--AATATTTA-AAA-ATA
61363461 AAAAATATTT
1 AAAAATATTT
61363471 TATTTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.12
19 14 0.54
20 3 0.12
21 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAAATATTTAAAAATA
Found at i:61366182 original size:20 final size:21
Alignment explanation
Indices: 61366154--61366198 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
61366144 TTTATACTAG
*
61366154 TTTACGTAATTAGAT-AATAT
1 TTTACGTAATTAAATGAATAT
*
61366174 TTTATGTAATTAAATGAATAT
1 TTTACGTAATTAAATGAATAT
61366195 TTTA
1 TTTA
61366199 ATAATTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (21 bp):
TTTACGTAATTAAATGAATAT
Found at i:61366203 original size:20 final size:20
Alignment explanation
Indices: 61366160--61366204 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
61366150 CTAGTTTACG
* *
61366160 TAATTAGATAATATTTTATG
1 TAATTAAATAATATTTTATA
61366180 TAATTAAATGAATATTTTA-A
1 TAATTAAAT-AATATTTTATA
61366200 TAATT
1 TAATT
61366205 TATGTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
TAATTAAATAATATTTTATA
Found at i:61368247 original size:10 final size:10
Alignment explanation
Indices: 61368224--61368255 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
61368214 ATTATTGACC
61368224 AAAAATT-T-
1 AAAAATTATA
61368232 AAAAATTATA
1 AAAAATTATA
61368242 AAAAATTATA
1 AAAAATTATA
61368252 AAAA
1 AAAA
61368256 TCAAGCGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 7 0.32
9 1 0.05
10 14 0.64
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:61371287 original size:139 final size:139
Alignment explanation
Indices: 61371037--61371312 Score: 435
Period size: 139 Copynumber: 2.0 Consensus size: 139
61371027 TGTTAATGAG
* *
61371037 GAGGGTCGGAGTATTTAAATAAAACAAATATGTTTAAAGTAAACTCGACCTACTTTTAACAAGGT
1 GAGGGTCAGAGTATTTAAATAAAACAAATATGTTTAAAGTAAACTCGACATACTTTTAACAAGGT
* *
61371102 ATTCAAAATTCGGGATGACGGGTTAGATCTAATTTCAACAAAATATTTTTAAATTCGGGATTACC
66 ATTCAAAATTCGGGATGACAGGTTAGATCTAATTTCAACAAAATATTTTTAAATTCGGGATAACC
61371167 TTAATTAAC
131 TTAATTAAC
** * *
61371176 GAGGGTCAGAGTATTTAAATAAAACAAATATGTTTAAAGTAAGTTCGACATACTTTTAATAATGT
1 GAGGGTCAGAGTATTTAAATAAAACAAATATGTTTAAAGTAAACTCGACATACTTTTAACAAGGT
** * * *
61371241 ATTTTAAATTTGGGATGACAGGTTGGATCTAATTTCAACAAAATATTTTTAAATTTGGGATAACC
66 ATTCAAAATTCGGGATGACAGGTTAGATCTAATTTCAACAAAATATTTTTAAATTCGGGATAACC
61371306 TTAATTA
131 TTAATTA
61371313 CCAAAATTTA
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
139 124 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (139 bp):
GAGGGTCAGAGTATTTAAATAAAACAAATATGTTTAAAGTAAACTCGACATACTTTTAACAAGGT
ATTCAAAATTCGGGATGACAGGTTAGATCTAATTTCAACAAAATATTTTTAAATTCGGGATAACC
TTAATTAAC
Found at i:61379688 original size:50 final size:50
Alignment explanation
Indices: 61379571--61379870 Score: 357
Period size: 50 Copynumber: 5.9 Consensus size: 50
61379561 TGATAATAAC
* ** * *
61379571 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCG
* * * *
61379622 GTGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* *
61379672 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * *
61379722 GTGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * * * *
61379772 GTGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATGATCTTAAGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC---TCATC-T--CG
*
61379828 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
61379871 TTACCCAAAT
Statistics
Matches: 217, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
50 140 0.65
51 33 0.15
53 4 0.02
54 1 0.00
56 39 0.18
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:61379986 original size:13 final size:13
Alignment explanation
Indices: 61379965--61379995 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
61379955 GCTTAGATCA
*
61379965 TCATCAAATAAAT
1 TCATAAAATAAAT
61379978 TCATAAAATAAAT
1 TCATAAAATAAAT
61379991 TCATA
1 TCATA
61379996 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:61384728 original size:24 final size:23
Alignment explanation
Indices: 61384684--61384732 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
61384674 ACAATAAATT
* *
61384684 AAATTAAAACTTCTATTTCATTAA
1 AAATTAAAACTACTATATCA-TAA
61384708 AAATTAAAA-TACATATATCATAA
1 AAATTAAAACTAC-TATATCATAA
61384731 AA
1 AA
61384733 GAAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATTAAAACTACTATATCATAA
Found at i:61386578 original size:18 final size:19
Alignment explanation
Indices: 61386555--61386595 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
61386545 ATTTATTTAT
*
61386555 TTTTATCATTCAT-TTTTG
1 TTTTATCATTCATGTTTGG
*
61386573 TTTTATTATTCATGTTTGG
1 TTTTATCATTCATGTTTGG
61386592 TTTT
1 TTTT
61386596 TGTAATTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68
Consensus pattern (19 bp):
TTTTATCATTCATGTTTGG
Found at i:61386956 original size:23 final size:23
Alignment explanation
Indices: 61386910--61386952 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
61386900 AATTGATCGA
* *
61386910 ACATATATTTGTATTTATTTTAT
1 ACATATAATTATATTTATTTTAT
61386933 ACATATAATTATA-TTATTTT
1 ACATATAATTATATTTATTTT
61386953 TATATCAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
ACATATAATTATATTTATTTTAT
Found at i:61389049 original size:45 final size:45
Alignment explanation
Indices: 61388969--61389055 Score: 106
Period size: 45 Copynumber: 1.9 Consensus size: 45
61388959 TTTAATTTAA
*
61388969 TTATTTTTATTTTAAAACAAATAAGATTACA-TTTTTTAATTGTT
1 TTATTTTTATTTTAAAACAAATAACATTACATTTTTTTAATTGTT
* **
61389013 TTATTTTTCTTTTTAAATTAAATAACATTA-ATTTTTTTTAATT
1 TTATTTTT-ATTTTAAAACAAATAACATTACA-TTTTTTTAATT
61389056 TAGACTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 9 0.25
45 17 0.47
46 10 0.28
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (45 bp):
TTATTTTTATTTTAAAACAAATAACATTACATTTTTTTAATTGTT
Found at i:61389995 original size:3 final size:3
Alignment explanation
Indices: 61389987--61390041 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
61389977 TTTTATAGCT
61389987 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
61390035 TTA TTA T
1 TTA TTA T
61390042 CATCATCTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:61390719 original size:18 final size:19
Alignment explanation
Indices: 61390698--61390734 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
61390688 TTTTAAAAAA
61390698 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
61390716 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
61390735 AAAAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:61390735 original size:18 final size:19
Alignment explanation
Indices: 61390698--61390748 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
61390688 TTTTAAAAAA
*
61390698 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
61390716 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
61390734 TAAAAATTATTTTGA
1 TATAAA-TATTTTGA
61390749 TTATTTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 15 0.52
19 14 0.48
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:61390763 original size:10 final size:10
Alignment explanation
Indices: 61390739--61390784 Score: 67
Period size: 10 Copynumber: 4.7 Consensus size: 10
61390729 AATTTTAAAA
61390739 ATTATTTTG-
1 ATTATTTTGT
61390748 ATTATTTTGT
1 ATTATTTTGT
61390758 ATTATTTTGT
1 ATTATTTTGT
*
61390768 ATTTTTTTGT
1 ATTATTTTGT
*
61390778 ATAATTT
1 ATTATTT
61390785 GCTCATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 9 0.27
10 24 0.73
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.70
Consensus pattern (10 bp):
ATTATTTTGT
Found at i:61393389 original size:31 final size:30
Alignment explanation
Indices: 61393314--61393395 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 30
61393304 AATGTGCTAC
61393314 TGTATACAT-AAATTTTAATTTGGTAC-AA
1 TGTATACATGAAATTTTAATTTGGTACAAA
*
61393342 T-TATACACGTGAAATTTTAATTGTGGTTCAAA
1 TGTATACA--TGAAATTTTAATT-TGGTACAAA
*
61393374 TGTATACTTGAAATTTTAATTT
1 TGTATACATGAAATTTTAATTT
61393396 TGATTTAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
27 6 0.13
28 1 0.02
29 1 0.02
30 12 0.26
31 18 0.39
32 3 0.07
33 5 0.11
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.45
Consensus pattern (30 bp):
TGTATACATGAAATTTTAATTTGGTACAAA
Found at i:61396081 original size:13 final size:12
Alignment explanation
Indices: 61396063--61396103 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
61396053 TTATTTTCTC
61396063 TCTTTTGCCTTTT
1 TCTTTTG-CTTTT
*
61396076 TCTTTTGTTTTT
1 TCTTTTGCTTTT
61396088 TCTTTTG--TTT
1 TCTTTTGCTTTT
61396098 TCTTTT
1 TCTTTT
61396104 CACTTTCACA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
12 11 0.41
13 7 0.26
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (12 bp):
TCTTTTGCTTTT
Found at i:61396089 original size:12 final size:12
Alignment explanation
Indices: 61396072--61396098 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
61396062 CTCTTTTGCC
61396072 TTTTTCTTTTGT
1 TTTTTCTTTTGT
61396084 TTTTTCTTTTGT
1 TTTTTCTTTTGT
61396096 TTT
1 TTT
61396099 CTTTTCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTTGT
Found at i:61403581 original size:113 final size:113
Alignment explanation
Indices: 61403374--61403671 Score: 294
Period size: 113 Copynumber: 2.6 Consensus size: 113
61403364 TACCTAATTC
* * * * * * ** **
61403374 TTTTTATACAAAATTAGGGATAATTCAACATTTAATCTCTAAACTTGGCAAGTTTTTTCAATCTT
1 TTTTTATACAAAATTAAGAATAAGTCAACATTTAGTCCCTAAACTT-GAAAACTTTCCCAA-CTT
* * * * *
61403439 AATTCCGATGATGACATGACATTCTGAGATTGTGAC-TCATCATCAACTAAT
64 GA-TCCTATGATGACATGACACTATGAGATTATGACAT-ATCATCAACTAAT
* *
61403490 TTTTTATAC-AAGTTAAGAATAAGTCAACATTTAGTTCCTAAACTTGAAAACTTTTCCCAACTTG
1 TTTTTATACAAAATTAAGAATAAGTCAACATTTAGTCCCTAAACTTGAAAAC-TTTCCCAACTTG
* * * *
61403554 GTCCTATGATGGCATGACACTATGAGATTATGACATGTCATCACCTAAT
65 ATCCTATGATGACATGACACTATGAGATTATGACATATCATCAACTAAT
* * * ** *
61403603 TTTTTATACAAAATTAGGGATAAGTCAACATTTAGTCCCTAAATTTGGCAACTTTCTCAACTTGA
1 TTTTTATACAAAATTAAGAATAAGTCAACATTTAGTCCCTAAACTTGAAAACTTTCCCAACTTGA
61403668 TCCT
66 TCCT
61403672 TGAATCTTTT
Statistics
Matches: 149, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
113 63 0.42
114 42 0.28
115 35 0.23
116 9 0.06
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (113 bp):
TTTTTATACAAAATTAAGAATAAGTCAACATTTAGTCCCTAAACTTGAAAACTTTCCCAACTTGA
TCCTATGATGACATGACACTATGAGATTATGACATATCATCAACTAAT
Found at i:61405486 original size:25 final size:25
Alignment explanation
Indices: 61405430--61405489 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
61405420 AATTACCTAT
*
61405430 CAAAACATAACCAAAATTAGACATA
1 CAAAACTTAACCAAAATTAGACATA
61405455 CAAAACTTAACCAAAATTAGACATA
1 CAAAACTTAACCAAAATTAGACATA
*
61405480 CCAAACTTAA
1 CAAAACTTAA
61405490 AATATAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.57, C:0.22, G:0.03, T:0.18
Consensus pattern (25 bp):
CAAAACTTAACCAAAATTAGACATA
Found at i:61411416 original size:14 final size:14
Alignment explanation
Indices: 61411397--61411441 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
61411387 TTATTTCGTT
61411397 TCTTCTCATTTCTA
1 TCTTCTCATTTCTA
*
61411411 TCTTCTCTATTTCGTT
1 TCTTCTC-ATTTC-TA
*
61411427 TCTTCTCCTTTCTA
1 TCTTCTCATTTCTA
61411441 T
1 T
61411442 ATTATTTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.35
15 9 0.35
16 8 0.31
ACGTcount: A:0.09, C:0.29, G:0.02, T:0.60
Consensus pattern (14 bp):
TCTTCTCATTTCTA
Found at i:61411432 original size:16 final size:16
Alignment explanation
Indices: 61411388--61411433 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 16
61411378 TTCATTTTTT
61411388 TATTTCGTTTCTTCTC
1 TATTTCGTTTCTTCTC
*
61411404 -ATTTC-TATCTTCTC
1 TATTTCGTTTCTTCTC
61411418 TATTTCGTTTCTTCTC
1 TATTTCGTTTCTTCTC
61411434 CTTTCTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 8 0.31
15 10 0.38
16 8 0.31
ACGTcount: A:0.09, C:0.26, G:0.04, T:0.61
Consensus pattern (16 bp):
TATTTCGTTTCTTCTC
Found at i:61411508 original size:3 final size:3
Alignment explanation
Indices: 61411448--61411490 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
61411438 CTATATTATT
*
61411448 TTC TTC TTC TTC CTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
61411491 CCCTATTCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:61422342 original size:32 final size:31
Alignment explanation
Indices: 61422294--61422362 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 31
61422284 CATGGATGTC
* *
61422294 AAATTA-ATAATTAATTAATTTTCAAATTAAA
1 AAATTATATAATAAATTAATTTTAAAATT-AA
*
61422325 AAATTATATAATAAATTATTTTTAAAATTAA
1 AAATTATATAATAAATTAATTTTAAAATTAA
61422356 AAATTAT
1 AAATTAT
61422363 TAAACTTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 15 0.44
32 19 0.56
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (31 bp):
AAATTATATAATAAATTAATTTTAAAATTAA
Found at i:61423422 original size:21 final size:22
Alignment explanation
Indices: 61423398--61423444 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
61423388 ACAAAAATTA
61423398 CAAAAAATTC-AAAATAATTTT
1 CAAAAAATTCAAAAATAATTTT
61423419 C-AAAAATTCAAAAATAATTTT
1 CAAAAAATTCAAAAATAATTTT
*
61423440 GAAAA
1 CAAAA
61423445 CTCAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 8 0.35
21 12 0.52
22 3 0.13
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (22 bp):
CAAAAAATTCAAAAATAATTTT
Found at i:61423423 original size:20 final size:20
Alignment explanation
Indices: 61423400--61423472 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
61423390 AAAAATTACA
61423400 AAAAATTC-AAAATAATTTT
1 AAAAATTCAAAAATAATTTT
61423419 CAAAAATTCAAAAATAATTTT
1 -AAAAATTCAAAAATAATTTT
* *
61423440 GAAAACTC-AAAAT-ATTTAT
1 AAAAATTCAAAAATAATTT-T
*
61423459 AAAAATTCTAAAAT
1 AAAAATTCAAAAAT
61423473 TTATATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
18 4 0.09
19 12 0.26
20 19 0.41
21 11 0.24
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAAATAATTTT
Found at i:61424262 original size:25 final size:28
Alignment explanation
Indices: 61424207--61424263 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 28
61424197 CTCATAAATT
*
61424207 TTTAAAAAATTGATATATTTTTGTAATA
1 TTTAAAAAATTGATATATTTTTGTAAAA
61424235 TTTAAAAAA-T-A-ATATTTTT-TAAAAA
1 TTTAAAAAATTGATATATTTTTGT-AAAA
61424260 TTTA
1 TTTA
61424264 TTCTGAGCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 1 0.04
25 15 0.56
26 1 0.04
27 1 0.04
28 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (28 bp):
TTTAAAAAATTGATATATTTTTGTAAAA
Found at i:61431016 original size:17 final size:18
Alignment explanation
Indices: 61430984--61431034 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
61430974 TATATTATGA
*
61430984 TTTAGTAAATTCATATA-T
1 TTTATTAAATT-ATATATT
61431002 TTTATTAAATTATATATT
1 TTTATTAAATTATATATT
61431020 TTTATTAAATTATAT
1 TTTATTAAATTATAT
61431035 TTAATAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 5 0.16
18 26 0.84
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTATTAAATTATATATT
Found at i:61431078 original size:98 final size:98
Alignment explanation
Indices: 61430902--61431078 Score: 275
Period size: 98 Copynumber: 1.8 Consensus size: 98
61430892 AATACTAAGA
* * ** *
61430902 ATTTTATCAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATTTTTAT
1 ATTTTATCAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAA
61430967 AGTATTATATATTATGATTTAGTAAATTCATAT
66 AGTATTATATATTATGATTTAGTAAATTCATAT
*
61431000 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAA
1 ATTTTATCAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAA
*
61431065 ATTATCTAT-TATTA
66 AGTAT-TATATATTA
61431079 ATATTAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
98 68 0.96
99 3 0.04
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (98 bp):
ATTTTATCAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAA
AGTATTATATATTATGATTTAGTAAATTCATAT
Found at i:61431244 original size:16 final size:16
Alignment explanation
Indices: 61431223--61431275 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
61431213 AGAATTACCT
61431223 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
61431239 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
*
61431255 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
61431271 ATTAC
1 ATTAC
61431276 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:61455288 original size:21 final size:21
Alignment explanation
Indices: 61455262--61455302 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
61455252 AGACGAGCAA
* *
61455262 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
61455283 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
61455303 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:61460415 original size:17 final size:16
Alignment explanation
Indices: 61460389--61460502 Score: 88
Period size: 16 Copynumber: 6.8 Consensus size: 16
61460379 ATTTTGAAGC
*
61460389 ACGAATTTTTTTAAAA
1 ACGAAATTTTTTAAAA
*
61460405 ACGAAAGTTTTTAAAA
1 ACGAAATTTTTTAAAA
61460421 CACGATAATTTTTTAAAA
1 -ACGA-AATTTTTTAAAA
*
61460439 TACGAAA-ATTTTAGAAA
1 -ACGAAATTTTTTA-AAA
* *
61460456 TACGAAAATTTTTGAAAC
1 -ACG-AAATTTTTTAAAA
*
61460474 ACGACAATTTTTTCAAA
1 ACGA-AATTTTTTAAAA
61460491 A-GATAATTTTTT
1 ACGA-AATTTTTT
61460503 TTTAAAATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
16 30 0.38
17 26 0.32
18 20 0.25
19 4 0.05
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.38
Consensus pattern (16 bp):
ACGAAATTTTTTAAAA
Found at i:61460431 original size:35 final size:36
Alignment explanation
Indices: 61460358--61460600 Score: 134
Period size: 35 Copynumber: 6.9 Consensus size: 36
61460348 AAACATGAGA
* * * *
61460358 AATTTTTTTAAAAACACGAGAA-TTTTGAAGCACG--
1 AATTTTTTT-AAAATACGAAAATTTTTAAAACACGAT
*
61460392 AATTTTTTTAAAA-ACGAAAGTTTTTAAAACACGAT
1 AATTTTTTTAAAATACGAAAATTTTTAAAACACGAT
*
61460427 AA-TTTTTTAAAATACGAAAA-TTTTAGAAATACGA-
1 AATTTTTTTAAAATACGAAAATTTTTA-AAACACGAT
* * * * *
61460461 AA-ATTTTTGAAACACGACAATTTTTTCAAA-A-GAT
1 AATTTTTTTAAAATACGA-AAATTTTTAAAACACGAT
* * *
61460495 AATTTTTTTTTAAAATACGAAAATTTGTGAAACACGAG
1 AA--TTTTTTTAAAATACGAAAATTTTTAAAACACGAT
* * * * *
61460533 AA-TTGTTGAAAACACAAAAATTTTTAAAAACACGAC
1 AATTTTTTTAAAATACGAAAATTTTT-AAAACACGAT
* * * *
61460569 AA--TTTTGAAAACATGAAAATTTTTGAAACACG
1 AATTTTTTTAAAATACGAAAATTTTTAAAACACG
61460601 GAAATCTTTA
Statistics
Matches: 166, Mismatches: 29, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
32 5 0.03
33 16 0.10
34 48 0.29
35 57 0.34
36 23 0.14
37 13 0.08
38 4 0.02
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (36 bp):
AATTTTTTTAAAATACGAAAATTTTTAAAACACGAT
Found at i:61460433 original size:18 final size:17
Alignment explanation
Indices: 61460356--61460645 Score: 155
Period size: 17 Copynumber: 16.5 Consensus size: 17
61460346 TGAAACATGA
61460356 GAAATTTTTTTAAAAACAC
1 GAAA-TTTTTT-AAAACAC
* *
61460375 GAGAA--TTTTGAAGCAC
1 GA-AATTTTTTAAAACAC
*
61460391 GAATTTTTTTAAAA-AC
1 GAAATTTTTTAAAACAC
*
61460407 GAAAGTTTTTAAAACAC
1 GAAATTTTTTAAAACAC
*
61460424 GATAATTTTTTAAAATAC
1 GA-AATTTTTTAAAACAC
* *
61460442 GAAA-ATTTTAGAAATAC
1 GAAATTTTTTA-AAACAC
* *
61460459 GAAAATTTTTGAAACAC
1 GAAATTTTTTAAAACAC
*
61460476 GACAATTTTTTCAAA-A-
1 GA-AATTTTTTAAAACAC
*
61460492 GATAATTTTTTTTTAAAATAC
1 GA-AA---TTTTTTAAAACAC
* * *
61460513 GAAAATTTGTGAAACAC
1 GAAATTTTTTAAAACAC
* *
61460530 GAGAATTGTTGAAAACAC
1 GA-AATTTTTTAAAACAC
* *
61460548 AAAAATTTTTAAAAACAC
1 -GAAATTTTTTAAAACAC
* *
61460566 GACAA-TTTTGAAAACAT
1 GA-AATTTTTTAAAACAC
* *
61460583 GAAAATTTTTGAAACAC
1 GAAATTTTTTAAAACAC
* *
61460600 GGAAA-TCTTTAGAAACAA
1 -GAAATTTTTTA-AAACAC
61460618 GAAATTTTTTTAAAACAC
1 GAAA-TTTTTTAAAACAC
61460636 GACAATTTTT
1 GA-AATTTTT
61460646 GGAACACGAG
Statistics
Matches: 209, Mismatches: 40, Indels: 45
0.71 0.14 0.15
Matches are distributed among these distances:
15 1 0.00
16 32 0.15
17 75 0.36
18 75 0.36
19 19 0.09
20 5 0.02
21 2 0.01
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (17 bp):
GAAATTTTTTAAAACAC
Found at i:61460536 original size:17 final size:17
Alignment explanation
Indices: 61460511--61460654 Score: 69
Period size: 18 Copynumber: 8.2 Consensus size: 17
61460501 TTTTTAAAAT
61460511 ACGAAAATTTGTGAAAC
1 ACGAAAATTTGTGAAAC
*
61460528 ACGAGAA-TTGTTGAAAAC
1 ACGAAAATTTG-TG-AAAC
* * *
61460546 ACAAAAATTTTTAAAAAC
1 ACGAAAATTTGT-GAAAC
*
61460564 ACGACAATTT-TGAAAAC
1 ACGAAAATTTGTG-AAAC
* *
61460581 ATGAAAATTTTTGAAAC
1 ACGAAAATTTGTGAAAC
*
61460598 ACGGAAATCTT-TAGAAAC
1 ACGAAAAT-TTGT-GAAAC
* * * *
61460616 AAGAAATTTTTTTAAAAC
1 ACGAAA-ATTTGTGAAAC
* * *
61460634 ACGACAATTTTTGGAAC
1 ACGAAAATTTGTGAAAC
61460651 ACGA
1 ACGA
61460655 GATTTTTTTT
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
16 3 0.03
17 44 0.46
18 45 0.47
19 4 0.04
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.27
Consensus pattern (17 bp):
ACGAAAATTTGTGAAAC
Found at i:61460566 original size:36 final size:34
Alignment explanation
Indices: 61460514--61460644 Score: 115
Period size: 35 Copynumber: 3.7 Consensus size: 34
61460504 TTAAAATACG
* * *
61460514 AAAATTTGTGAAACACGAGAATTGTTGAAAACACA
1 AAAATTTTTAAAACACGACAATT-TTGAAAACACA
**
61460549 AAAATTTTTAAAAACACGACAATTTTGAAAACATG
1 AAAATTTTT-AAAACACGACAATTTTGAAAACACA
*
61460584 AAAATTTTTGAAACACGGA-AATCTTT-AGAAACA-A
1 AAAATTTTTAAAACAC-GACAAT-TTTGA-AAACACA
*
61460618 GAAATTTTTTTAAAACACGACAATTTT
1 -AAA-ATTTTTAAAACACGACAATTTT
61460645 TGGAACACGA
Statistics
Matches: 80, Mismatches: 9, Indels: 14
0.78 0.09 0.14
Matches are distributed among these distances:
34 10 0.12
35 44 0.55
36 26 0.32
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.29
Consensus pattern (34 bp):
AAAATTTTTAAAACACGACAATTTTGAAAACACA
Found at i:61460990 original size:10 final size:10
Alignment explanation
Indices: 61460974--61461011 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
61460964 TTGAACCCCC
61460974 TTTTTTTCCT
1 TTTTTTTCCT
61460984 CTTTTTTT-CT
1 -TTTTTTTCCT
*
61460994 TTTTTTTTCT
1 TTTTTTTCCT
61461004 TTTTTTTC
1 TTTTTTTC
61461012 TGGACTGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 7 0.28
10 11 0.44
11 7 0.28
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTCCT
Found at i:61460998 original size:18 final size:18
Alignment explanation
Indices: 61460975--61461009 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61460965 TGAACCCCCT
61460975 TTTTTTCCTCTTTTTTTC
1 TTTTTTCCTCTTTTTTTC
**
61460993 TTTTTTTTTCTTTTTTT
1 TTTTTTCCTCTTTTTTT
61461010 TCTGGACTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTTTTCCTCTTTTTTTC
Found at i:61461010 original size:19 final size:20
Alignment explanation
Indices: 61460974--61461012 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
61460964 TTGAACCCCC
61460974 TTTTTTTCCTCTTTTTTTCT
1 TTTTTTTCCTCTTTTTTTCT
*
61460994 TTTTTTTTCT-TTTTTTTCT
1 TTTTTTTCCTCTTTTTTTCT
61461013 GGACTGGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTTCCTCTTTTTTTCT
Found at i:61461333 original size:7 final size:7
Alignment explanation
Indices: 61461321--61461413 Score: 64
Period size: 7 Copynumber: 13.1 Consensus size: 7
61461311 AAAAAAATTA
61461321 TTTTCTT
1 TTTTCTT
61461328 TTTTC-T
1 TTTTCTT
61461334 TTTTC-T
1 TTTTCTT
61461340 TTTTCTT
1 TTTTCTT
*
61461347 TTCCTCCTT
1 TT--TTCTT
*
61461356 TCTTCTT
1 TTTTCTT
** *
61461363 CCTCCTT
1 TTTTCTT
*
61461370 TCTTCTT
1 TTTTCTT
61461377 TCTTTCTT
1 T-TTTCTT
*
61461385 CTTTCTT
1 TTTTCTT
61461392 TTTTCTT
1 TTTTCTT
*
61461399 CTTTCTT
1 TTTTCTT
*
61461406 TCTTCTT
1 TTTTCTT
61461413 T
1 T
61461414 GTTCAGCTCC
Statistics
Matches: 69, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
6 12 0.17
7 47 0.68
8 5 0.07
9 5 0.07
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTCTT
Found at i:61461381 original size:25 final size:25
Alignment explanation
Indices: 61461353--61461412 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
61461343 TCTTTTCCTC
61461353 CTTTCTTCTTCCTCCTTTCTTCTTT
1 CTTTCTTCTTCCTCCTTTCTTCTTT
* **
61461378 CTTTCTTCTTTCTTTTTTCTTCTTT
1 CTTTCTTCTTCCTCCTTTCTTCTTT
61461403 CTTTCTTCTT
1 CTTTCTTCTT
61461413 TGTTCAGCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (25 bp):
CTTTCTTCTTCCTCCTTTCTTCTTT
Found at i:61461799 original size:29 final size:29
Alignment explanation
Indices: 61461744--61461904 Score: 141
Period size: 30 Copynumber: 5.4 Consensus size: 29
61461734 TTCTGGGATG
* *
61461744 AAATGTAATTTTGAAAAAAATTTAGGGTCA
1 AAATGAAATTTT-AAAAAAGTTTAGGGTCA
** * *
61461774 AAATTTAATTTTAAGAATGTTTAGGGGTCA
1 AAATGAAATTTTAAAAAAGTTTA-GGGTCA
*
61461804 AAATGAAATTTCAAAAAAGTTTAAGGGTCA
1 AAATGAAATTTTAAAAAAGTTT-AGGGTCA
*
61461834 CAATGAAATTTT-AAAAAGTTTAGGCGTCA
1 AAATGAAATTTTAAAAAAGTTTAGG-GTCA
61461863 AAAT-ATAATTTT-AAAAA-TTTAAAGGGTCA
1 AAATGA-AATTTTAAAAAAGTTT--AGGGTCA
*
61461892 AAATATAAATTTT
1 AAAT-GAAATTTT
61461905 TAGAAAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
28 7 0.06
29 43 0.39
30 59 0.53
31 2 0.02
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (29 bp):
AAATGAAATTTTAAAAAAGTTTAGGGTCA
Found at i:61461864 original size:59 final size:58
Alignment explanation
Indices: 61461758--61461910 Score: 168
Period size: 59 Copynumber: 2.6 Consensus size: 58
61461748 GTAATTTTGA
** * *
61461758 AAAAAATTT-AGGGTCAAAATTTAATTTTAAGAATGTTTAGGGGTCAAAATGA-AATTT
1 AAAAAATTTAAGGGTCAAAATGAAATTTTAAGAAAGTTTAGGCGTCAAAAT-ATAATTT
*
61461815 CAAAAAAGTTTAAGGGTCACAATGAAATTTTAA-AAAGTTTAGGCGTCAAAATATAATTT
1 -AAAAAA-TTTAAGGGTCAAAATGAAATTTTAAGAAAGTTTAGGCGTCAAAATATAATTT
* * *
61461874 TAAAAATTTAAAGGGTCAAAATATAAATTTTTAGAAA
1 AAAAAATTT-AAGGGTCAAAAT-GAAATTTTAAGAAA
61461911 AACACGAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
57 3 0.04
58 23 0.29
59 33 0.41
60 21 0.26
ACGTcount: A:0.47, C:0.05, G:0.15, T:0.33
Consensus pattern (58 bp):
AAAAAATTTAAGGGTCAAAATGAAATTTTAAGAAAGTTTAGGCGTCAAAATATAATTT
Found at i:61465012 original size:28 final size:29
Alignment explanation
Indices: 61464959--61465023 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
61464949 ATGCTCGAAC
*
61464959 TAAAT-TTTCAGAAAAAGATC-ATTTTTT
1 TAAATATTTCAGAAAAAGACCAATTTTTT
61464986 TAAATATTTCA-AAAATAGACCAATTTTTT
1 TAAATATTTCAGAAAA-AGACCAATTTTTT
*
61465015 TAAAAATTT
1 TAAATATTT
61465024 ACGAGAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 9 0.27
28 9 0.27
29 15 0.45
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.43
Consensus pattern (29 bp):
TAAATATTTCAGAAAAAGACCAATTTTTT
Found at i:61466776 original size:22 final size:21
Alignment explanation
Indices: 61466722--61466798 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 21
61466712 TTCACATCTC
*
61466722 AAATTCTCTCAATTTCCTCTC-
1 AAATTCTCTCAATTTCTTC-CA
* *
61466743 TAATCCTCTCAATTTCATTCCA
1 AAATTCTCTCAATTTC-TTCCA
* *
61466765 CAATTCTCTCAATTTCCTTCAA
1 AAATTCTCTCAATTT-CTTCCA
*
61466787 AAATTCTTTCAA
1 AAATTCTCTCAA
61466799 ATCCATATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
21 15 0.33
22 29 0.64
23 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.42
Consensus pattern (21 bp):
AAATTCTCTCAATTTCTTCCA
Found at i:61466872 original size:30 final size:31
Alignment explanation
Indices: 61466838--61466896 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
61466828 TTTCATTTTT
* *
61466838 TTAAAAT-AATTTTAATTTTTTTCTATTTCA
1 TTAAAATAAATTTAAATTTTTTTATATTTCA
61466868 TTAAAATAAATTTAAATTTTTTTATATTT
1 TTAAAATAAATTTAAATTTTTTTATATTT
61466897 TCATCAATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (31 bp):
TTAAAATAAATTTAAATTTTTTTATATTTCA
Found at i:61467988 original size:7 final size:7
Alignment explanation
Indices: 61467976--61468000 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
61467966 AGTCGATTGA
61467976 TATTTAG
1 TATTTAG
61467983 TATTTAG
1 TATTTAG
61467990 TATTTAG
1 TATTTAG
61467997 TATT
1 TATT
61468001 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:61469233 original size:36 final size:35
Alignment explanation
Indices: 61469151--61469234 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 35
61469141 AATTTTTTCG
* * *
61469151 AGTTAATTTGATATTATTTGACGTAATAATATAAA
1 AGTTTATTTGATATTATTTGACATAATAAAATAAA
* *
61469186 AGTTTATTTTGATATTATTTGACATAGTAAAATAGA
1 AGTTTA-TTTGATATTATTTGACATAATAAAATAAA
*
61469222 TGTTGTATTTGAT
1 AGTT-TATTTGAT
61469235 GTAATAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 5 0.12
36 34 0.83
37 2 0.05
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.46
Consensus pattern (35 bp):
AGTTTATTTGATATTATTTGACATAATAAAATAAA
Found at i:61469270 original size:24 final size:24
Alignment explanation
Indices: 61469239--61469360 Score: 163
Period size: 24 Copynumber: 4.8 Consensus size: 24
61469229 TTTGATGTAA
61469239 TAAAAACCCTAACCCTAACTTAAT
1 TAAAAACCCTAACCCTAACTTAAT
*
61469263 TAAAAACCCTAAACCTAACTTAAT
1 TAAAAACCCTAACCCTAACTTAAT
*
61469287 TAAAAATCCTAACCCAAACCCTAACTTAAT
1 T--AAA----AACCCTAACCCTAACTTAAT
*
61469317 TAAAAACCATAACCCTAACTTAAT
1 TAAAAACCCTAACCCTAACTTAAT
61469341 TAAAAACCCTAACCCTAACT
1 TAAAAACCCTAACCCTAACT
61469361 CTAACCATAA
Statistics
Matches: 86, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
24 61 0.71
26 3 0.03
28 3 0.03
30 19 0.22
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.24
Consensus pattern (24 bp):
TAAAAACCCTAACCCTAACTTAAT
Found at i:61469366 original size:36 final size:36
Alignment explanation
Indices: 61469321--61470547 Score: 780
Period size: 36 Copynumber: 37.1 Consensus size: 36
61469311 CTTAATTAAA
*
61469321 AACCATAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * *
61469357 AACTCTAACCATAACTTAAGT-AAAA-CCT-----T
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469386 AA--C---C-CTAACTTAATT-AAAACCCTTAAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCC-T--AACCCT
61469418 AACCCTAACCCTAACTTAATT--AAA----AA-CCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61469447 AA--C---C-CTAACTTAATTAAAAACCTTAAAACTCT
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
* *
61469479 AACCCTAA-CTTAA-TTAA-AAACACTAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAA-A--AACCCTAACCCT
* *
61469515 AACCTTAACCCTAACCGGTAATAACTTAAAAACCTTAA----
1 AACCCTAACCCTAA-C--T--TAA-TTAAAAACCCTAACCCT
*
61469553 AACCCTAACCTTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61469589 AA--CT-----T-A----ATTAAAAACCTTAAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
* *
61469615 AACCCTAACCCTAACCTAATTAAAAACCCTAACTCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61469651 AACCCTAACCCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469687 AACCCTAACCCTAACTTAATT--AAA----AACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469717 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61469753 AACCCTAACCCTAATCTTAACTT---AA--TTAA---A
1 AACCCTAACCCTAA-CTTAA-TTAAAAACCCTAACCCT
*
61469783 AACCCTAACCCTAACTCAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469819 AACCCTAACCCTAACTTAATT--AAA----AACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61469849 AA--C---CCC-AACTTACTTAAAAACCTTAAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
* *
61469881 AACCCTAACCTTAACTTAATTAAAAACCCTAACTCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61469917 AACCCTAACCCTAATTTAATT-AAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469952 AACCCTAACCCTAACTTAATTAAAAA-CCTAA----
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469983 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470019 AACCCTAACCTTAACTTAATT--AAA----AACCC-
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470048 -A----AACCCTAACTTAATTAAAAACCATAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470079 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61470115 AACCCTAACCTTAACTTAATTAAAAACCTTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * *****
61470151 AA-CTTAA--TTAA---AAACCCTAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61470181 AA-CCT-----TAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61470211 AACCCTAACCCTAACTTAATT----A----AA----
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470235 AACCCTAACCCTAACTTAATTAAAAACCTTAAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
* *
61470273 AACCCTAACCTTAACTTAATTAAAAACCCTAAACCTT
1 AACCCTAACCCTAACTTAATTAAAAACCCT-AACCCT
* **
61470310 AAACCTAA-TTTAA-TTAA--AAACTTTAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAA----AACCCTAACCCT
* *
61470346 AAACCTAACCCTAACTTAATTAAAAACCTTAA----
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61470378 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61470414 AACCCTAACCTTAACTTAATTAAAAACCCAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * *****
61470450 AA-CTTAA--TTAA---AAACCCTAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61470480 AA------CCCTAACTTAATT-AAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61470509 AACCCTAACCTTAACTTAATTAAAAACCCAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61470545 AAC
1 AAC
61470548 TTAATTAAAA
Statistics
Matches: 950, Mismatches: 86, Indels: 310
0.71 0.06 0.23
Matches are distributed among these distances:
23 24 0.03
24 58 0.06
25 7 0.01
26 14 0.01
27 8 0.01
28 10 0.01
29 27 0.03
30 111 0.12
31 33 0.03
32 67 0.07
33 21 0.02
34 20 0.02
35 71 0.07
36 332 0.35
37 41 0.04
38 89 0.09
40 3 0.00
41 1 0.00
42 7 0.01
43 3 0.00
44 1 0.00
45 2 0.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (36 bp):
AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
Found at i:61469394 original size:23 final size:24
Alignment explanation
Indices: 61469362--61469420 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 24
61469352 ACCCTAACTC
*
61469362 TAACCATAACTTAAGTAAAA-CCT
1 TAACCCTAACTTAAGTAAAACCCT
*
61469385 TAACCCTAACTTAATTAAAACCCT
1 TAACCCTAACTTAAGTAAAACCCT
61469409 TAAAACCCTAAC
1 T--AACCCTAAC
61469421 CCTAACCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
23 18 0.58
24 4 0.13
26 9 0.29
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.25
Consensus pattern (24 bp):
TAACCCTAACTTAAGTAAAACCCT
Found at i:61469449 original size:23 final size:23
Alignment explanation
Indices: 61469421--61469469 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
61469411 AAACCCTAAC
61469421 CCTAACCCTAACTTAATTAAAAA
1 CCTAACCCTAACTTAATTAAAAA
61469444 CCTAACCCTAACTTAATTAAAAA
1 CCTAACCCTAACTTAATTAAAAA
61469467 CCT
1 CCT
61469470 TAAAACTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.27
Consensus pattern (23 bp):
CCTAACCCTAACTTAATTAAAAA
Found at i:61469512 original size:6 final size:6
Alignment explanation
Indices: 61469501--61469530 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
61469491 ATTAAAAACA
*
61469501 CTAACC CTAACC CTAACC TTAACC CTAACC
1 CTAACC CTAACC CTAACC CTAACC CTAACC
61469531 GGTAATAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (6 bp):
CTAACC
Found at i:61469555 original size:56 final size:56
Alignment explanation
Indices: 61469495--61469631 Score: 158
Period size: 56 Copynumber: 2.4 Consensus size: 56
61469485 AACTTAATTA
* *
61469495 AAAACACTAACCCTAACCCTAACCTT-AACCCTAACCGGTAA-TAACTTAAAAACCTT
1 AAAACCCTAACCCTAACCCTAACCTTAAACCCTAACC-CTAACTAA-TTAAAAACCTT
* *
61469551 AAAACCCTAACCTTAA-CTTAA--TTAAAAACCCTAACCCTAACTTAATTAAAAACCTT
1 AAAACCCTAACCCTAACCCTAACCTT--AAACCCTAACCCTAAC-TAATTAAAAACCTT
61469607 AAAACCCTAACCCTAACCCTAACCT
1 AAAACCCTAACCCTAACCCTAACCT
61469632 AATTAAAAAC
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
53 2 0.03
55 7 0.10
56 50 0.75
57 7 0.10
59 1 0.01
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (56 bp):
AAAACCCTAACCCTAACCCTAACCTTAAACCCTAACCCTAACTAATTAAAAACCTT
Found at i:61469583 original size:24 final size:24
Alignment explanation
Indices: 61469551--61469604 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
61469541 TAAAAACCTT
*
61469551 AAAACCCTAACCTTAACTTAATTA
1 AAAACCCTAACCCTAACTTAATTA
61469575 AAAACCCTAACCCTAACTTAATTA
1 AAAACCCTAACCCTAACTTAATTA
61469599 AAAACC
1 AAAACC
61469605 TTAAAACCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (24 bp):
AAAACCCTAACCCTAACTTAATTA
Found at i:61469620 original size:6 final size:6
Alignment explanation
Indices: 61469609--61469766 Score: 63
Period size: 6 Copynumber: 26.3 Consensus size: 6
61469599 AAAACCTTAA
**** *
61469609 AACCCT AACCCT AACCCT AA-CCT AATTAAA AACCCT AACTCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AA-CCCT AACCCT AACCCT AACCCT
** **** *
61469657 AACCCT AA-TTT AATTAAA AACCCT AACCCT AACCCT AACCCT AA-CTT
1 AACCCT AACCCT AA-CCCT AACCCT AACCCT AACCCT AACCCT AACCCT
**** * ****
61469704 AATTAAA AACCCT AACCCT AACCCT AA-CTT AATTAAA AACCCT AACCCT
1 AA-CCCT AACCCT AACCCT AACCCT AACCCT AA-CCCT AACCCT AACCCT
61469753 AACCCT AACCCT AA
1 AACCCT AACCCT AA
61469767 TCTTAACTTA
Statistics
Matches: 110, Mismatches: 34, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
5 16 0.15
6 86 0.78
7 8 0.07
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (6 bp):
AACCCT
Found at i:61469719 original size:24 final size:24
Alignment explanation
Indices: 61469687--61469821 Score: 129
Period size: 24 Copynumber: 5.6 Consensus size: 24
61469677 CCCTAACCCT
61469687 AACCCTAACCCTAACTTAATTAAAAA
1 AACCCTAACCCTAACTTAATT--AAA
61469713 CCCTAACCCTAACCCTAACTTAATTAAA
1 ----AACCCTAACCCTAACTTAATTAAA
**
61469741 AACCCTAACCCTAAC---CCT---
1 AACCCTAACCCTAACTTAATTAAA
* *
61469759 AACCCTAATCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61469783 AACCCTAACCCTAACTCAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61469807 AACCCTAACCCTAAC
1 AACCCTAACCCTAAC
61469822 CCTAACCCTA
Statistics
Matches: 90, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
18 13 0.14
21 2 0.02
24 51 0.57
28 3 0.03
30 21 0.23
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (24 bp):
AACCCTAACCCTAACTTAATTAAA
Found at i:61469757 original size:42 final size:42
Alignment explanation
Indices: 61469711--61469797 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
61469701 CTTAATTAAA
61469711 AACCCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61469753 AACCCTAACCCTAATCTTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61469795 AAC
1 AAC
61469798 TCAATTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.41, C:0.36, G:0.00, T:0.23
Consensus pattern (42 bp):
AACCCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
Found at i:61469791 original size:18 final size:18
Alignment explanation
Indices: 61469789--61469851 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
61469779 TAAAAACCCT
*
61469789 AACCCTAACTCAATTAAA
1 AACCCTAACTTAATTAAA
* ****
61469807 AACCCTAACCCTAA-CCCT
1 AACCCTAA-CTTAATTAAA
61469825 AACCCTAACTTAATTAAA
1 AACCCTAACTTAATTAAA
61469843 AACCCTAAC
1 AACCCTAAC
61469852 CCCAACTTAC
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
17 4 0.12
18 25 0.78
19 3 0.09
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (18 bp):
AACCCTAACTTAATTAAA
Found at i:61469851 original size:24 final size:24
Alignment explanation
Indices: 61469819--61469870 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
61469809 CCCTAACCCT
*
61469819 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCCAACTTAATTAAA
*
61469843 AACCCTAACCCCAACTTACTTAAA
1 AACCCTAACCCCAACTTAATTAAA
61469867 AACC
1 AACC
61469871 TTAAAACCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.21
Consensus pattern (24 bp):
AACCCTAACCCCAACTTAATTAAA
Found at i:61469852 original size:6 final size:6
Alignment explanation
Indices: 61469807--61469833 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
61469797 CTCAATTAAA
61469807 AACCCT AACCCT AACCCT AACCCT AAC
1 AACCCT AACCCT AACCCT AACCCT AAC
61469834 TTAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:61469949 original size:6 final size:6
Alignment explanation
Indices: 61469940--61469966 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
61469930 ATTTAATTAA
61469940 AACCCT AACCCT AACCCT AACCCT AAC
1 AACCCT AACCCT AACCCT AACCCT AAC
61469967 TTAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (6 bp):
AACCCT
Found at i:61470046 original size:24 final size:24
Alignment explanation
Indices: 61470019--61470177 Score: 105
Period size: 24 Copynumber: 6.6 Consensus size: 24
61470009 CCCTAACCCT
*
61470019 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61470043 AACCCAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
* *
61470067 AACCATAACCCTAACCTTAACCCTAACTTA
1 AACCCTAACCCTAA-CTTAA--TTAA---A
***** **
61470097 ATTAAAAACCCTAAC---CCT--A
1 AACCCTAACCCTAACTTAATTAAA
*
61470116 A-CCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61470139 AACCTTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61470163 AACCCTAACCCTAAC
1 AACCCTAACCCTAAC
61470178 CCTAACCTTA
Statistics
Matches: 103, Mismatches: 20, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
18 8 0.08
19 2 0.02
21 1 0.01
23 2 0.02
24 70 0.68
25 5 0.05
27 3 0.03
29 1 0.01
30 11 0.11
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.25
Consensus pattern (24 bp):
AACCCTAACCCTAACTTAATTAAA
Found at i:61470243 original size:24 final size:24
Alignment explanation
Indices: 61470211--61470262 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
61470201 CCCTAACCCT
61470211 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61470235 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61470259 AACC
1 AACC
61470263 TTAAAACCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (24 bp):
AACCCTAACCCTAACTTAATTAAA
Found at i:61470244 original size:6 final size:6
Alignment explanation
Indices: 61470163--61470225 Score: 56
Period size: 6 Copynumber: 10.5 Consensus size: 6
61470153 CTTAATTAAA
* * ****
61470163 AACCCT AACCCT AACCCT AACCTT AA-CTT AATTAAA AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT AA-CCCT AACCCT AACCCT
61470211 AACCCT AACCCT AAC
1 AACCCT AACCCT AAC
61470226 TTAATTAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
5 5 0.11
6 40 0.85
7 2 0.04
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (6 bp):
AACCCT
Found at i:61470412 original size:111 final size:109
Alignment explanation
Indices: 61470238--61470440 Score: 297
Period size: 111 Copynumber: 1.8 Consensus size: 109
61470228 AATTAAAAAC
61470238 CCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAATTAAAAACCCT
1 CCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAA-TAAAAACCCT
* *
61470303 AAACCTTAAACC-TAATTTAATTAAAAACTTTAACCCTAACCCTAAA
65 -AACCCT-AACCTTAACTTAATTAAAAACTTTAACCCTAACCCTAAA
61470349 CCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAA-CTTAA-TTAA-AAACCCTAAC
1 CCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAATAAA----AAC
61470411 CCTAACCCTAACCTTAACTTAATTAAAAAC
62 CCTAACCCTAACCTTAACTTAATTAAAAAC
61470441 CCAAACCCTA
Statistics
Matches: 85, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
107 3 0.04
109 8 0.09
110 25 0.29
111 49 0.58
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (109 bp):
CCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAATAAAAACCCTA
ACCCTAACCTTAACTTAATTAAAAACTTTAACCCTAACCCTAAA
Found at i:61470441 original size:24 final size:24
Alignment explanation
Indices: 61470414--61470691 Score: 118
Period size: 24 Copynumber: 10.8 Consensus size: 24
61470404 CCCTAACCCT
*
61470414 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61470438 AACCCAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
* * *
61470462 AACCCTAACCCTAACCCTAACCCTAACTT
1 AACCCTAACCCTAA-CTTAA--TTAA--A
**** **
61470491 AATTAAAACCCTAAC---CCT---
1 AACCCTAACCCTAACTTAATTAAA
*
61470509 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61470533 AACCCAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61470557 AACCCTAACCCTAACCCCTAACTCTAACTTA
1 AACCCTAACCCTAA--CTTAA-T-TAA---A
*****
61470588 ATTAAAAACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCC------TAACTTAATTAAA
61470618 AACTCTAACCCTAACCCTAACTTAATTAAA
1 AAC-C---C--TAACCCTAACTTAATTAAA
61470648 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61470672 AACCCTAACCCTAACCTTAA
1 AACCCTAACCCTAA-CTTAA
61470692 CCCCAACCGG
Statistics
Matches: 190, Mismatches: 33, Indels: 61
0.67 0.12 0.21
Matches are distributed among these distances:
18 10 0.05
21 1 0.01
23 2 0.01
24 103 0.54
25 9 0.05
26 5 0.03
27 4 0.02
28 4 0.02
29 11 0.06
30 18 0.09
31 7 0.04
33 3 0.02
34 1 0.01
35 4 0.02
36 5 0.03
37 3 0.02
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (24 bp):
AACCCTAACCCTAACTTAATTAAA
Found at i:61470473 original size:6 final size:6
Alignment explanation
Indices: 61470462--61470523 Score: 63
Period size: 6 Copynumber: 10.5 Consensus size: 6
61470452 CTTAATTAAA
* ****
61470462 AACCCT AACCCT AACCCT AACCCT AA-CTT AATTAA AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT AACCCT
*
61470509 AACCCT AACCTT AAC
1 AACCCT AACCCT AAC
61470524 TTAATTAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
5 4 0.09
6 42 0.91
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (6 bp):
AACCCT
Found at i:61470693 original size:36 final size:36
Alignment explanation
Indices: 61470648--61470843 Score: 181
Period size: 36 Copynumber: 5.4 Consensus size: 36
61470638 CTTAATTAAA
*
61470648 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
* * *
61470684 AACCTTAACCCCAACCGGTAACAACTTAAAAACCTTAAAACCCT
1 AACCTTAACCCTAA-C--T--TAA-TTAAAAACCCT--AACCCT
*
61470728 AACCTTAACACTAACTTAATTAAAAACCCTAA-CCT
1 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470763 AAACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 -AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
**
61470800 AACC-T-----TAACTTAATTAAAAAAGCTAACCCT
1 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61470830 AACCTAAACCCTAA
1 AACCTTAACCCTAA
61470844 ACCCTAACCA
Statistics
Matches: 131, Mismatches: 13, Indels: 32
0.74 0.07 0.18
Matches are distributed among these distances:
30 27 0.21
35 4 0.03
36 51 0.39
37 4 0.03
38 10 0.08
39 3 0.02
41 3 0.02
42 10 0.08
43 1 0.01
44 18 0.14
ACGTcount: A:0.44, C:0.32, G:0.02, T:0.22
Consensus pattern (36 bp):
AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
Found at i:61470694 original size:60 final size:60
Alignment explanation
Indices: 61469651--61470662 Score: 835
Period size: 60 Copynumber: 15.7 Consensus size: 60
61469641 CCCTAACTCT
*
61469651 AACCCTAACCCTAATTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATT--AAA
61469713 CCCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAATCTTAACTTAA
1 ----AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAA-CC----C-TAACTTAA
61469778 TTAAA
56 TTAAA
*
61469783 AACCCTAACCCTAACTCAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
* * * *
61469843 AACCCTAACCCCAACTTACTTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCTAACCCTAACCCTAACTTAATTAAA
*
61469905 AACCCTAACTCTAACCCTAACCCTAATTTAATTAAAACCCTAACCCTAACCCTAACCCTAACTTA
1 AA--C---C-CTAACCCTAA-CTTAA-TT-A--AAAACCCTAACCCTAACCCTAACCCTAACTTA
61469970 ATTAAAAACCTAA
55 ATT----A---AA
*
61469983 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
* * *
61470043 AACCCAAACCCTAACTTAATTAAAAACCATAACCCTAACCTTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
* * * * *
61470103 AACCCTAACCCTAACCCTAACCTTAACTTAA--TTAA---AAACCTTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAA-CTTAA--TTAA--AAACCCTAACCCTAACCCTAACCCTAACTTAATT--A
61470163 AA
59 AA
61470165 CCCTAACCCTAACCCTAACCTTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAA
1 ----AACCCTAA--C---CC-TAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAA
61470230 TTAAA
56 TTAAA
* *
61470235 AACCCTAACCCTAACTTAATTAAAAACCTTAAAACCCTAACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCTAACCCTAACCCTAACTTAATTAAA
* *
61470297 AACCCTAAACCTTAAACCTAATTTAATTAAAAACTTTAACCCTAACCCTAAACCTAACCCTAACT
1 AACCCT-AA-C-----CCTAACTTAATT--AAA----AACCCTAACCCTAACCCTAACCCTAACT
61470362 TAATTAAAAACCTTAA
53 TAATT----A----AA
*
61470378 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
*
61470438 AACCCAAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATT-AA
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
* * * * *
61470497 AACCCTAACCCTAACCCTAACCTTAACTTAA--TTAA---AAACCCAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAA-CTTAA--TTAA--AAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
* * ** * ****
61470557 AACCCTAACCCTAACCCCTAACT-CTAA-CTTAATTAAAAACCCTAACCCTAACTTAATTAAAAA
1 AACCCTAACCCTAA--CTTAATTAAAAACCCTAA-CCCTAACCCTAACCCTAACTTAATT--AAA
61470620 CTCTAACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAAC
1 ----AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAAC
61470663 TTAATTAAAA
Statistics
Matches: 798, Mismatches: 57, Indels: 182
0.77 0.05 0.18
Matches are distributed among these distances:
56 3 0.00
57 4 0.01
59 36 0.05
60 226 0.28
61 34 0.04
62 76 0.10
63 13 0.02
64 6 0.01
65 9 0.01
66 107 0.13
67 57 0.07
68 41 0.05
69 22 0.03
70 10 0.01
71 41 0.05
72 46 0.06
73 33 0.04
74 11 0.01
75 6 0.01
76 1 0.00
77 1 0.00
78 4 0.01
79 1 0.00
80 2 0.00
81 8 0.01
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (60 bp):
AACCCTAACCCTAACTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACTTAATTAAA
Found at i:61470755 original size:30 final size:29
Alignment explanation
Indices: 61470720--61470891 Score: 138
Period size: 30 Copynumber: 5.7 Consensus size: 29
61470710 TAAAAACCTT
*
61470720 AAAACCCTAACCTTAACACTAACTTAATTA
1 AAAACCCTAACCCTAAC-CTAACTTAATTA
61470750 AAAACCCTAACCTAAACCCTAACCCTAACTTAATTA
1 AAAA--C---CCT-AACCCTAA-CCTAACTTAATTA
61470786 AAAACCCTAACCCTAACCTTAACTTAATTA
1 AAAACCCTAACCCTAACC-TAACTTAATTA
** **
61470816 AAAAAGCTAACCCTAACCTAA---ACCCT-
1 AAAACCCTAACCCTAACCTAACTTA-ATTA
*
61470842 -AAACCCTAACCATAACCTTAACTTAATTA
1 AAAACCCTAACCCTAACC-TAACTTAATTA
* *
61470871 GAAACACTAACCCTAACCTAA
1 AAAACCCTAACCCTAACCTAA
61470892 TTTTACATAA
Statistics
Matches: 115, Mismatches: 12, Indels: 31
0.73 0.08 0.20
Matches are distributed among these distances:
25 14 0.12
26 4 0.03
27 1 0.01
28 1 0.01
29 9 0.08
30 54 0.47
31 3 0.03
32 1 0.01
34 1 0.01
35 3 0.03
36 23 0.20
37 1 0.01
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.23
Consensus pattern (29 bp):
AAAACCCTAACCCTAACCTAACTTAATTA
Found at i:61470791 original size:18 final size:18
Alignment explanation
Indices: 61470738--61470796 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
61470728 AACCTTAACA
61470738 CTAACTTAATTAAAAACC
1 CTAACTTAATTAAAAACC
* *****
61470756 CTAACCTAAACCCTAACC
1 CTAACTTAATTAAAAACC
61470774 CTAACTTAATTAAAAACC
1 CTAACTTAATTAAAAACC
61470792 CTAAC
1 CTAAC
61470797 CCTAACCTTA
Statistics
Matches: 29, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.24
Consensus pattern (18 bp):
CTAACTTAATTAAAAACC
Found at i:61470792 original size:24 final size:26
Alignment explanation
Indices: 61470763--61470867 Score: 92
Period size: 25 Copynumber: 4.0 Consensus size: 26
61470753 ACCCTAACCT
61470763 AAACCCTAACCCTAA-CTTAA-TTAA
1 AAACCCTAACCCTAACCTTAACTTAA
61470787 AAACCCTAACCCTAACCTTAACTTAATTAA
1 AAACCCTAACCCTAACCTTAAC----TTAA
** * *
61470817 AAAAGCTAACCCTAACCTAAACCCT--
1 AAACCCTAACCCTAACCTTAA-CTTAA
*
61470842 AAACCCTAACCATAACCTTAACTTAA
1 AAACCCTAACCCTAACCTTAACTTAA
61470868 TTAGAAACAC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
24 17 0.27
25 22 0.35
27 1 0.02
30 22 0.35
31 1 0.02
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.23
Consensus pattern (26 bp):
AAACCCTAACCCTAACCTTAACTTAA
Found at i:61470858 original size:55 final size:55
Alignment explanation
Indices: 61470787--61470891 Score: 176
Period size: 55 Copynumber: 1.9 Consensus size: 55
61470777 ACTTAATTAA
*
61470787 AAACCCTAACCCTAACCTTAACTTAATTA-AAAAAGCTAACCCTAACCTAAACCCT
1 AAACCCTAACCATAACCTTAACTTAATTAGAAAAA-CTAACCCTAACCTAAACCCT
*
61470842 AAACCCTAACCATAACCTTAACTTAATTAGAAACACTAACCCTAACCTAA
1 AAACCCTAACCATAACCTTAACTTAATTAGAAAAACTAACCCTAACCTAA
61470892 TTTTACATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 43 0.91
56 4 0.09
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.22
Consensus pattern (55 bp):
AAACCCTAACCATAACCTTAACTTAATTAGAAAAACTAACCCTAACCTAAACCCT
Found at i:61473923 original size:123 final size:124
Alignment explanation
Indices: 61473703--61474045 Score: 494
Period size: 123 Copynumber: 2.8 Consensus size: 124
61473693 CTTGCTATTG
* * *
61473703 TAGCAAAATCGCGTCCACGGGGCCGCGGTTTCACAATTTCTCCTCAAATACCATCCTGGTAGAAG
1 TAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCGAATACCATCCTGGTAGAAG
*
61473768 CGGTTTTATACTATTTGCTCAGAAACGTCAAAAAAAATCATTTCATACATGACCTACTC
66 CGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATCATTTCATACATGACCTACTC
* * * * *
61473827 TAGCAAAATCGCGTCCACGGGGGCACAATTTCACAA-TTCTCCTCGAATTCCGTCCTGGTATAAG
1 TAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCGAATACCATCCTGGTAGAAG
* * * * *
61473891 CAATTTTACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGACCTACTG
66 CGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATCATTTCATACATGACCTACTC
* *
61473950 TAGCAACATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCT-GAAATACCATCCTGGTAGCA
1 TAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCG-AATACCATCCTGGTAGAA
*
61474014 GCGATTTTATACTATTT-CACCAGAAACGTCAA
65 GCGATTTTATACTATTTGC-TCAGAAACGTCAA
61474046 CTCGAAATAA
Statistics
Matches: 192, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
123 112 0.58
124 80 0.42
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (124 bp):
TAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCGAATACCATCCTGGTAGAAG
CGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATCATTTCATACATGACCTACTC
Found at i:61474272 original size:5 final size:5
Alignment explanation
Indices: 61474262--61474287 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
61474252 TGAGCATTCG
61474262 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
61474288 AATTTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:61474943 original size:17 final size:17
Alignment explanation
Indices: 61474916--61474948 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
61474906 AAAGTTTAGG
61474916 GGGGAAATAAAAAGTTTT
1 GGGGAAAT-AAAAGTTTT
61474934 GGGG-AATAAAAGTTT
1 GGGGAAATAAAAGTTT
61474949 GAAGGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.53
17 3 0.20
18 4 0.27
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.27
Consensus pattern (17 bp):
GGGGAAATAAAAGTTTT
Found at i:61475325 original size:9 final size:9
Alignment explanation
Indices: 61475311--61475347 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
61475301 TATAGTTTGA
61475311 TATTCGAAT
1 TATTCGAAT
61475320 TATTCGAAT
1 TATTCGAAT
*
61475329 TATTCGAGT
1 TATTCGAAT
*
61475338 TATTCAAAT
1 TATTCGAAT
61475347 T
1 T
61475348 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:61476261 original size:20 final size:20
Alignment explanation
Indices: 61476236--61476274 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
61476226 AGAATCGTGA
61476236 TAAGCTGGACAATGCATATG
1 TAAGCTGGACAATGCATATG
*
61476256 TAAGCTGGACCATGCATAT
1 TAAGCTGGACAATGCATAT
61476275 ATAGTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (20 bp):
TAAGCTGGACAATGCATATG
Found at i:61478122 original size:6 final size:6
Alignment explanation
Indices: 61478111--61478140 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
61478101 ATTAAAAACA
*
61478111 CTAACC CTAACC CTAACC TTAACC CTAACC
1 CTAACC CTAACC CTAACC CTAACC CTAACC
61478141 GATAACAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (6 bp):
CTAACC
Found at i:61478193 original size:24 final size:24
Alignment explanation
Indices: 61478161--61478266 Score: 142
Period size: 24 Copynumber: 4.2 Consensus size: 24
61478151 TAAAAACCTT
*
61478161 AAAACCCTAACCTTAACTTAATTA
1 AAAACCCTAACCCTAACTTAATTA
61478185 AAAACCCTAACCCTAACCCTAAGTTAATTA
1 AAAACCCTAACCCTAA--C----TTAATTA
61478215 AAAACCCTAACCCTAACTTAATT-
1 AAAACCCTAACCCTAACTTAATTA
61478238 AAAACCCTAACCCTAACTTAATTA
1 AAAACCCTAACCCTAACTTAATTA
61478262 AAAAC
1 AAAAC
61478267 TTTAAAACCC
Statistics
Matches: 74, Mismatches: 1, Indels: 14
0.83 0.01 0.16
Matches are distributed among these distances:
23 23 0.31
24 26 0.35
26 1 0.01
28 1 0.01
30 23 0.31
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (24 bp):
AAAACCCTAACCCTAACTTAATTA
Found at i:61478227 original size:36 final size:36
Alignment explanation
Indices: 61478163--61478916 Score: 367
Period size: 36 Copynumber: 21.1 Consensus size: 36
61478153 AAAACCTTAA
*
61478163 AACCCTAACCTTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
** **
61478199 AACCCTAA-GTTAA-TTAA--AAACCCTAACCCTAACTTAATT
1 AACCCTAACCCTAACTTAATTAAA----AACCCTAAC---CCT
**
61478238 AAAACCCTAACCCTAACTTAATTAAAAACTTTAAAACCCT
1 -A-ACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
*
61478278 AACCCTAACCCTAACTTAATTAAAAACCCTAACTCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61478314 AACCCTAACCCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
*
61478350 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * ****
61478386 AA-CTTAA--TTAA---AA-CCCTAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * ***** *
61478415 AA-CTTAA--TTAA---AAACCCTAACCCTGACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * **
61478445 AACCTTAACT-TAA-TTAA--AAACCCTAACCCTAACTTAATT
1 AACCCTAACCCTAACTTAATTAAA----AACCCTAAC---CCT
*
61478484 AAAAACCCTAACCCTAACTTAATTAAAAACCTTAAAACCCT
1 ---AACCCTAACCCTAACTTAATTAAAAACCCT--AACCCT
* *
61478525 AACCCTAACCTTAACTTAATTAAAAACCCTAACTCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * **
61478561 AATCCTAACCCTAATTTAATTAAAAACCCTAACAAT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61478597 AAAAACCCTAACCCTAACCTTAACTT---AA--TTAA---A
1 ---AACCCTAACCCTAA-CTTAA-TTAAAAACCCTAACCCT
*
61478630 AACCCAAACCCTAACTTAATTAACAAA-CCTAACCCT
1 AACCCTAACCCTAACTTAATTAA-AAACCCTAACCCT
61478666 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* *
61478702 AACCCTAACCTTAACTTAATTAAAAACCCAAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
** * * *
61478738 AACTTAATTAAAAACCCTAACCCTAACTT---AA--TTAA---A
1 AAC---CCT---AACCCTAA-CTTAA-TTAAAAACCCTAACCCT
*
61478774 AACCATAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
* * *
61478810 AACCCTAACCGATAAC--AGTTTAAAAACCTTAAAACCCT
1 AACCCTAACC-CTAACTTA-ATTAAAAACCCT--AACCCT
*
61478848 AACCTTAACCCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61478884 AA-CCT-----TAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
61478914 AAC
1 AAC
61478917 TTAATTAAAA
Statistics
Matches: 572, Mismatches: 72, Indels: 153
0.72 0.09 0.19
Matches are distributed among these distances:
28 4 0.01
29 34 0.06
30 67 0.12
31 7 0.01
32 8 0.01
33 10 0.02
34 6 0.01
35 15 0.03
36 237 0.41
37 8 0.01
38 82 0.14
39 20 0.03
40 6 0.01
41 16 0.03
42 23 0.04
43 14 0.02
44 9 0.02
45 3 0.01
46 3 0.01
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.25
Consensus pattern (36 bp):
AACCCTAACCCTAACTTAATTAAAAACCCTAACCCT
Found at i:61478307 original size:18 final size:18
Alignment explanation
Indices: 61478284--61478382 Score: 80
Period size: 18 Copynumber: 5.5 Consensus size: 18
61478274 CCCTAACCCT
61478284 AACCCTAACTTAATTAAA
1 AACCCTAACTTAATTAAA
****
61478302 AACCCTAACTCTAA-CCCT
1 AACCCTAACT-TAATTAAA
*
61478320 AACCCTAATTTAATTAAA
1 AACCCTAACTTAATTAAA
*
61478338 AACCCTAACCCTAACCTT---
1 AACCCTAA-CTTAA--TTAAA
61478356 AACCCTAACTTAATTAAA
1 AACCCTAACTTAATTAAA
61478374 AACCCTAAC
1 AACCCTAAC
61478383 CCTAACTTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
15 2 0.03
17 7 0.11
18 44 0.72
19 6 0.10
21 2 0.03
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.25
Consensus pattern (18 bp):
AACCCTAACTTAATTAAA
Found at i:61478377 original size:24 final size:24
Alignment explanation
Indices: 61478350--61479025 Score: 282
Period size: 24 Copynumber: 26.9 Consensus size: 24
61478340 CCCTAACCCT
*
61478350 AACCTTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61478374 AACCCTAACCCTAACTTAATTAAAA
1 AACCCTAACCCTAACTTAATT-AAA
61478399 CCCTAACCCTAACCCTAACTTAATTAAA
1 ----AACCCTAACCCTAACTTAATTAAA
61478427 AACCCTAACCCTGACCCTAACCTTAACTTAATTAA
1 AACCCT-A-----ACCCTAA-CTTAA-TT-A--AA
*
61478462 AAACCCTAACCCTAACTTAATTAAA
1 AACCC-TAACCCTAACTTAATTAAA
61478487 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
* *
61478511 AACCTTAAAACCCTAACCCTAACCTTAACTTA
1 AACCCT--AACCCTAA-CTTAA--TTAA---A
***** ***
61478543 ATTAAAAACCCTAACTCTAA-TCCT
1 AACCCTAACCCTAACT-TAATTAAA
61478567 AACCCTAA---T---TTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
** *****
61478585 AACCCTAACAATAA---AAACCCT
1 AACCCTAACCCTAACTTAATTAAA
*
61478606 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61478630 AACCCAAACCCTAACTTAATTAACAAA
1 AACCCTAACCCTAACTTAATT---AAA
* *
61478657 CCTAACCCTAACCCTAACCCTAACTTAAT
1 ---AACCCTAACCCTAA-CTTAA-TTAAA
* ** **
61478686 TA--AAAACCCTAAC---CCT---
1 AACCCTAACCCTAACTTAATTAAA
*
61478702 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61478726 AACCCAAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61478750 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61478774 AACCATAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
* **
61478798 AACCCTAACCCTAACCCTAACCGATAA
1 AACCCTAACCCTAA-CTTAA-TTA-AA
* *** * *
61478825 CAGTTTAA---AAACCTTAA--AACCCT
1 AACCCTAACCCTAA-CTTAATTAA---A
*
61478848 AACCTTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
61478872 AACCCTAACCCTAACCTTAACTTAATTAAA
1 AACCCTAA--C---CC-TAACTTAATTAAA
61478902 AACCCTAACCCTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
*
61478926 AACCCTAACCTTAACTTAATTAAA
1 AACCCTAACCCTAACTTAATTAAA
* *
61478950 AACCCTAACCCTAACCTAAACCCTAAA
1 AACCCTAACCCTAA-CTTAA--TTAAA
* *
61478977 CCCTAACCATAACCTTAACTTAATTAAA
1 ----AACCCTAACCCTAACTTAATTAAA
*
61479005 AACCCTAACCCTAACCTAATT
1 AACCCTAACCCTAACTTAATT
61479026 TTACATAATG
Statistics
Matches: 495, Mismatches: 82, Indels: 150
0.68 0.11 0.21
Matches are distributed among these distances:
16 1 0.00
17 3 0.01
18 18 0.04
19 1 0.00
20 1 0.00
21 18 0.04
23 6 0.01
24 244 0.49
25 25 0.05
26 13 0.03
27 21 0.04
28 10 0.02
29 35 0.07
30 63 0.13
31 21 0.04
32 6 0.01
33 1 0.00
35 7 0.01
36 1 0.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (24 bp):
AACCCTAACCCTAACTTAATTAAA
Found at i:61478557 original size:18 final size:17
Alignment explanation
Indices: 61478531--61478608 Score: 70
Period size: 18 Copynumber: 4.5 Consensus size: 17
61478521 CCCTAACCCT
*
61478531 AACCTTAACTTAATTAAA
1 AACCCTAACTTAA-TAAA
***
61478549 AACCCTAACTCTAATCCT
1 AACCCTAACT-TAATAAA
*
61478567 AACCCTAATTTAATTAAA
1 AACCCTAACTTAA-TAAA
61478585 AACCCTAAC--AATAAA
1 AACCCTAACTTAATAAA
61478600 AACCCTAAC
1 AACCCTAAC
61478609 CCTAACCTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
15 13 0.27
16 2 0.04
17 3 0.06
18 28 0.57
19 3 0.06
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.26
Consensus pattern (17 bp):
AACCCTAACTTAATAAA
Found at i:61478668 original size:6 final size:6
Alignment explanation
Indices: 61478657--61478716 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
61478647 AATTAACAAA
* * ***
61478657 CCTAAC CCTAAC CCTAAC CCTAA- CTTAATT AAAAAC CCTAAC CCTAAC
1 CCTAAC CCTAAC CCTAAC CCTAAC CCTAA-C CCTAAC CCTAAC CCTAAC
*
61478705 CCTAAC CTTAAC
1 CCTAAC CCTAAC
61478717 TTAATTAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
5 4 0.09
6 37 0.86
7 2 0.05
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (6 bp):
CCTAAC
Found at i:61478910 original size:18 final size:20
Alignment explanation
Indices: 61478908--61478944 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
61478898 TAAAAACCCT
61478908 AACCCTAA-CTTAA-TTAAA
1 AACCCTAACCTTAACTTAAA
61478926 AACCCTAACCTTAACTTAA
1 AACCCTAACCTTAACTTAA
61478945 TTAAAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (20 bp):
AACCCTAACCTTAACTTAAA
Found at i:61478980 original size:19 final size:18
Alignment explanation
Indices: 61478949--61479023 Score: 66
Period size: 19 Copynumber: 4.1 Consensus size: 18
61478939 ACTTAATTAA
61478949 AAACCCTAACCCTAACCT
1 AAACCCTAACCCTAACCT
61478967 AAACCCTAAACCCTAACC-
1 AAACCCT-AACCCTAACCT
* * *
61478985 ATAACCTTAA-CTTAA-TT
1 A-AACCCTAACCCTAACCT
61479002 AAAAACCCTAACCCTAACCT
1 --AAACCCTAACCCTAACCT
61479022 AA
1 AA
61479024 TTTTACATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
17 4 0.09
18 19 0.43
19 20 0.45
20 1 0.02
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (18 bp):
AAACCCTAACCCTAACCT
Found at i:61482240 original size:124 final size:124
Alignment explanation
Indices: 61481898--61482228 Score: 527
Period size: 124 Copynumber: 2.7 Consensus size: 124
61481888 AACTTGCTAT
* *
61481898 TGTAGCAAAATCGCGTCCACGGGGCCGCGGTTTCACAATTTCTCCTCAAATACCATCCTGGTAGA
1 TGTAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCAAATACCATCCTGGTAGA
* *
61481963 AGCGATTTTATACTATTTGCTCAGAAACGTAAAAAAAAATCCTTTCATACATGACCTAC
66 AGCGATTTTATACTATTTGCTCAGAAACGTAAAAAAAAATCATTTCATACATGACCTAA
* * * *
61482022 TGTAGCAAAATCGCGTCCACGGGGGCACAATTTCACAATTTCTCCTCAAATTCCATCCTGGTATA
1 TGTAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCAAATACCATCCTGGTAGA
* * * *
61482087 AGCAATTTTACACTATTTGCTCAGAAACGTAAAAAAAAATTATTTCTTACATGACCTAA
66 AGCGATTTTATACTATTTGCTCAGAAACGTAAAAAAAAATCATTTCATACATGACCTAA
* * *
61482146 TGTAGCAACATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTGAAATACCATCCTGGTAGC
1 TGTAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCAAATACCATCCTGGTAGA
61482211 AGCGATTTTATACTATTT
66 AGCGATTTTATACTATTT
61482229 CACCAGAAAC
Statistics
Matches: 186, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
124 186 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (124 bp):
TGTAGCAAAATCGCGTCCACGGGGGCGCGATTTCACAATTTCTCCTCAAATACCATCCTGGTAGA
AGCGATTTTATACTATTTGCTCAGAAACGTAAAAAAAAATCATTTCATACATGACCTAA
Found at i:61483170 original size:20 final size:20
Alignment explanation
Indices: 61483145--61483183 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61483135 AGAATCGTGA
61483145 TAAGCTGGACAATGCATATG
1 TAAGCTGGACAATGCATATG
* *
61483165 TAAGCTTGACCATGCATAT
1 TAAGCTGGACAATGCATAT
61483184 ATAGTTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (20 bp):
TAAGCTGGACAATGCATATG
Found at i:61487124 original size:16 final size:16
Alignment explanation
Indices: 61487103--61487135 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
61487093 GCATATATGA
61487103 TAATTGATTATCTTGC
1 TAATTGATTATCTTGC
*
61487119 TAATTGGTTATCTTGC
1 TAATTGATTATCTTGC
61487135 T
1 T
61487136 TCGTTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.52
Consensus pattern (16 bp):
TAATTGATTATCTTGC
Found at i:61488626 original size:28 final size:29
Alignment explanation
Indices: 61488565--61488630 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
61488555 TATATGTATT
61488565 TATATATAATTTTAAGTTATGAAAAAAAG
1 TATATATAATTTTAAGTTATGAAAAAAAG
*
61488594 TATATATAGTTTTAAGTTAT-AAAAAATA-
1 TATATATAATTTTAAGTTATGAAAAAA-AG
61488622 TATATATAA
1 TATATATAA
61488631 ATATAGATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 14 0.41
29 20 0.59
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.41
Consensus pattern (29 bp):
TATATATAATTTTAAGTTATGAAAAAAAG
Found at i:61488687 original size:20 final size:19
Alignment explanation
Indices: 61488664--61488709 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
61488654 AAAAAATGTG
61488664 TATATATATAAATTATAGAA
1 TATATATATAAATTATA-AA
* *
61488684 TATACATATATATTATAAA
1 TATATATATAAATTATAAA
*
61488703 AATATAT
1 TATATAT
61488710 GTATGCATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TATATATATAAATTATAAA
Found at i:61488934 original size:31 final size:31
Alignment explanation
Indices: 61488857--61488934 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
61488847 AAATGAGTAA
* *
61488857 ATAATAATAACAACAATATTAATGATATAAT
1 ATAATAATAACAATAATATTAATGATACAAT
* *
61488888 ATAATAGTAATAATAATATTAACATGAT-CAAT
1 ATAATAATAACAATAATATT-A-ATGATACAAT
*
61488920 TTAATAATAA-AATAA
1 ATAATAATAACAATAA
61488935 CCTAAATACC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 22 0.56
32 12 0.31
33 5 0.13
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (31 bp):
ATAATAATAACAATAATATTAATGATACAAT
Found at i:61494001 original size:12 final size:12
Alignment explanation
Indices: 61493984--61494022 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
61493974 TTACAAAAAA
61493984 TTCAAAATAATT
1 TTCAAAATAATT
61493996 TTC-AAA-AA--
1 TTCAAAATAATT
61494004 TTCAAAATAATT
1 TTCAAAATAATT
61494016 TTCAAAA
1 TTCAAAA
61494023 ATTCAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 3 0.13
9 3 0.13
10 4 0.17
11 3 0.13
12 10 0.43
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (12 bp):
TTCAAAATAATT
Found at i:61494002 original size:20 final size:20
Alignment explanation
Indices: 61493979--61494106 Score: 115
Period size: 20 Copynumber: 6.2 Consensus size: 20
61493969 AAAAATTACA
61493979 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
61493999 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
61494019 AAAAATTCAAAAATAAATTTT-
1 AAAAATTC-AAAAT-AATTTTC
*
61494040 -AAAACTCAAAAT-ATTTAT-
1 AAAAATTCAAAATAATTT-TC
61494058 AAAAATTCTAAAATTTATATTTTTC
1 AAAAATTC-AAAA--TA-A-TTTTC
*
61494083 AAAAAAAT-AAAA-AATTTTC
1 -AAAAATTCAAAATAATTTTC
61494102 AAAAA
1 AAAAA
61494107 AGTTTTAAAA
Statistics
Matches: 93, Mismatches: 3, Indels: 26
0.76 0.02 0.21
Matches are distributed among these distances:
17 4 0.04
18 6 0.06
19 16 0.17
20 39 0.42
21 6 0.06
22 7 0.08
24 6 0.06
25 3 0.03
26 6 0.06
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:61494118 original size:22 final size:19
Alignment explanation
Indices: 61494090--61494154 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 19
61494080 TTCAAAAAAA
61494090 TAAAAAATTTTCAAAAAAGTTT
1 TAAAAAATTTT-AAAAAAG--T
*
61494112 TAAAAAATTATAAAGAAAGT
1 TAAAAAATTTTAAA-AAAGT
* *
61494132 TAAAAATTTTTAAAAAAAT
1 TAAAAAATTTTAAAAAAGT
61494151 TAAA
1 TAAA
61494155 TAATAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
19 8 0.21
20 13 0.34
21 3 0.08
22 14 0.37
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAAAAATTTTAAAAAAGT
Found at i:61494125 original size:10 final size:10
Alignment explanation
Indices: 61494090--61494148 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
61494080 TTCAAAAAAA
61494090 TAAAAAATTT
1 TAAAAAATTT
61494100 TCAAAAAAGTTT
1 T-AAAAAA-TTT
*
61494112 TAAAAAATTA
1 TAAAAAATTT
*
61494122 TAAAGAAA-GT
1 TAAA-AAATTT
*
61494132 TAAAAATTTT
1 TAAAAAATTT
61494142 TAAAAAA
1 TAAAAAA
61494149 ATTAAATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 2 0.05
10 18 0.46
11 15 0.38
12 4 0.10
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (10 bp):
TAAAAAATTT
Found at i:61494153 original size:19 final size:19
Alignment explanation
Indices: 61494076--61494154 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 19
61494066 TAAAATTTAT
*
61494076 ATTTTTCAAAAAAATAAAAA
1 ATTTTT-AAAAAAATTAAAA
* *
61494096 ATTTTCAAAAAAGTTTTAAAA
1 ATTTTTAAAAAA--ATTAAAA
* * *
61494117 AATTATAAAGAAAGTTAAAA
1 ATTTTTAAA-AAAATTAAAA
61494137 ATTTTTAAAAAAATTAAA
1 ATTTTTAAAAAAATTAAA
61494155 TAATAATTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
19 14 0.30
20 18 0.39
21 11 0.24
22 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (19 bp):
ATTTTTAAAAAAATTAAAA
Found at i:61498742 original size:16 final size:17
Alignment explanation
Indices: 61498721--61498752 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
61498711 TTATAAACAA
61498721 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
61498737 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
61498753 GCTTAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:61500299 original size:14 final size:16
Alignment explanation
Indices: 61500282--61500318 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
61500272 AAATAAAATT
61500282 ATATAAAATT-ATA-A
1 ATATAAAATTAATATA
*
61500296 ATATTAAATTAATATA
1 ATATAAAATTAATATA
61500312 ATATAAA
1 ATATAAA
61500319 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 9 0.47
15 3 0.16
16 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAATTAATATA
Found at i:61500322 original size:22 final size:24
Alignment explanation
Indices: 61500263--61500322 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 24
61500253 CTATGTAAAA
61500263 AAAATTAATAAATA--AAATTATAT
1 AAAATT-ATAAATATTAAATTATAT
61500286 AAAATTATAAATATTAAATTA-AT
1 AAAATTATAAATATTAAATTATAT
*
61500309 ATAA-TATAAATATT
1 AAAATTATAAATATT
61500323 TTTAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
22 17 0.50
23 11 0.32
24 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATTATAAATATTAAATTATAT
Found at i:61508632 original size:188 final size:188
Alignment explanation
Indices: 61508315--61508694 Score: 733
Period size: 188 Copynumber: 2.0 Consensus size: 188
61508305 TTGGGTGATC
*
61508315 GTTGATCGATTAACAAAATCAGCACATTTTATCCCGGTACGTATGGGTTATTCTCTAGATAATTT
1 GTTGATCGATTAACAAAATCAGCACATTTTATCCCGGTACGTATGGGTTATTCTCTAGATAAATT
61508380 GGCTGAACTGTATATATCTGAGATTGTCAGGCTGCATGGAGTGCCAATCTCTATTATCTCTGATA
66 GGCTGAACTGTATATATCTGAGATTGTCAGGCTGCATGGAGTGCCAATCTCTATTATCTCTGATA
**
61508445 GAGATCCCCGATTTACATCTCGTTTCTGGGACAAATTGCAAGAAGCCTTGGGTACTCA
131 GAGATCCCCGATTTACATCTCGAGTCTGGGACAAATTGCAAGAAGCCTTGGGTACTCA
61508503 GTTGATCGATTAACAAAATCAGCACATTTTATCCCGGTACGTATGGGTTATTCTCTAGATAAATT
1 GTTGATCGATTAACAAAATCAGCACATTTTATCCCGGTACGTATGGGTTATTCTCTAGATAAATT
61508568 GGCTGAACTGTATATATCTGAGATTGTCAGGCTGCATGGAGTGCCAATCTCTATTATCTCTGATA
66 GGCTGAACTGTATATATCTGAGATTGTCAGGCTGCATGGAGTGCCAATCTCTATTATCTCTGATA
61508633 GAGATCCCCGATTTACATCTCGAGTCTGGGACAAATTGCAAGAAGCCTTGGGTACTCA
131 GAGATCCCCGATTTACATCTCGAGTCTGGGACAAATTGCAAGAAGCCTTGGGTACTCA
61508691 GTTG
1 GTTG
61508695 TATTTCAGCA
Statistics
Matches: 189, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
188 189 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (188 bp):
GTTGATCGATTAACAAAATCAGCACATTTTATCCCGGTACGTATGGGTTATTCTCTAGATAAATT
GGCTGAACTGTATATATCTGAGATTGTCAGGCTGCATGGAGTGCCAATCTCTATTATCTCTGATA
GAGATCCCCGATTTACATCTCGAGTCTGGGACAAATTGCAAGAAGCCTTGGGTACTCA
Found at i:61513292 original size:20 final size:20
Alignment explanation
Indices: 61513269--61513342 Score: 96
Period size: 20 Copynumber: 3.7 Consensus size: 20
61513259 ACAAATTACA
61513269 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
*
61513289 AAAAATTCAAAATAACTTTC
1 AAAAATTCAAAATAATTTTC
*
61513309 AAATATTCCAAAATAATTTT-
1 AAAAATT-CAAAATAATTTTC
* *
61513329 TAAAACTCAAAATA
1 AAAAATTCAAAATA
61513343 TTTATAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.15
20 29 0.62
21 11 0.23
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:61513350 original size:18 final size:18
Alignment explanation
Indices: 61513317--61513365 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
61513307 TCAAATATTC
*
61513317 CAAAATAATTTTTAAAACT
1 CAAAAT-ATTTATAAAACT
*
61513336 CAAAATATTTATAAAATT
1 CAAAATATTTATAAAACT
*
61513354 CTAAA-ATTTATA
1 CAAAATATTTATA
61513366 TTTTTCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 7 0.26
18 14 0.52
19 6 0.22
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
CAAAATATTTATAAAACT
Found at i:61513359 original size:19 final size:19
Alignment explanation
Indices: 61513270--61513405 Score: 81
Period size: 20 Copynumber: 7.2 Consensus size: 19
61513260 CAAATTACAA
61513270 AAAATTCAAAATAATTT-T
1 AAAATTCAAAATAATTTAT
61513288 CAAAAATTCAAAATAACTTTCA-
1 --AAAATTCAAAATAA-TTT-AT
* *
61513310 AATATTCCAAAATAATTTTT
1 AAAATT-CAAAATAATTTAT
*
61513330 AAAACTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
*
61513348 AAAATTC-TAA-AATTTAT
1 AAAATTCAAAATAATTTAT
***
61513365 ATTTTTCAAAA-AA-TTAT
1 AAAATTCAAAATAATTTAT
*
61513382 AAAAATTTCAAAA-AATTTCT
1 -AAAA-TTCAAAATAATTTAT
61513402 AAAA
1 AAAA
61513406 AATTTATAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 21
0.72 0.12 0.17
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 19 0.21
20 29 0.32
21 11 0.12
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:61513396 original size:11 final size:10
Alignment explanation
Indices: 61513368--61513410 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
61513358 AATTTATATT
61513368 TTTCAAAAAA
1 TTTCAAAAAA
61513378 -TT-ATAAAAA
1 TTTCA-AAAAA
61513387 TTTCAAAAAA
1 TTTCAAAAAA
61513397 TTTCTAAAAAA
1 TTTC-AAAAAA
61513408 TTT
1 TTT
61513411 ATAAAGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.03
9 7 0.24
10 11 0.38
11 10 0.34
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (10 bp):
TTTCAAAAAA
Found at i:61513438 original size:13 final size:13
Alignment explanation
Indices: 61513422--61513448 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61513412 TAAAGAAAGT
61513422 TAATAATTTAAAA
1 TAATAATTTAAAA
61513435 TAATAATTTAAAA
1 TAATAATTTAAAA
61513448 T
1 T
61513449 TTAAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATAATTTAAAA
Found at i:61514187 original size:23 final size:23
Alignment explanation
Indices: 61514161--61514232 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
61514151 ATATTTTTTG
*
61514161 AAAATTTAGTCTGAACACGAATA
1 AAAATTTAGTCTGAACACGAAAA
* * *
61514184 AAAATGT-GTC-CACGACACAAAAA
1 AAAATTTAGTCTGA--ACACGAAAA
*
61514207 AAAATTTAGTCTGAACACGAACA
1 AAAATTTAGTCTGAACACGAAAA
61514230 AAA
1 AAA
61514233 TTGATCTATT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 1 0.03
22 3 0.08
23 29 0.78
24 3 0.08
25 1 0.03
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.19
Consensus pattern (23 bp):
AAAATTTAGTCTGAACACGAAAA
Found at i:61515053 original size:12 final size:12
Alignment explanation
Indices: 61515021--61515063 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
61515011 CTAATCATCG
*
61515021 CTCAAATTTCCT
1 CTCAATTTTCCT
61515033 CTCAA-TTTCCT
1 CTCAATTTTCCT
*
61515044 CTAAATTTT-CT
1 CTCAATTTTCCT
61515055 CTCAATTTT
1 CTCAATTTT
61515064 GGTGTTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (12 bp):
CTCAATTTTCCT
Found at i:61515063 original size:11 final size:11
Alignment explanation
Indices: 61515025--61515062 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
61515015 TCATCGCTCA
61515025 AATTTCCTCTC
1 AATTTCCTCTC
*
61515036 AATTTCCTCTA
1 AATTTCCTCTC
*
61515047 AATTTTCTCTC
1 AATTTCCTCTC
61515058 AATTT
1 AATTT
61515063 TGGTGTTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (11 bp):
AATTTCCTCTC
Found at i:61515996 original size:115 final size:115
Alignment explanation
Indices: 61515394--61515971 Score: 1113
Period size: 115 Copynumber: 5.0 Consensus size: 115
61515384 AGATATTAAT
61515394 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61515459 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61515509 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61515574 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61515624 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61515689 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61515739 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
* *
61515804 GAATGGTAGTGTCGGCATTGTTTATTCATTGGTAGCTGAAAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61515854 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
* *
61515919 GAATGGTAGTGTCGGCATTGTTTATTCATTGGTAGCTGAAAAGAAAAT-A
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61515968 TAGT
1 TAGT
61515972 TGAGCTGCGG
Statistics
Matches: 461, Mismatches: 2, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
114 5 0.01
115 456 0.99
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (115 bp):
TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
Found at i:61517699 original size:108 final size:108
Alignment explanation
Indices: 61517565--61517783 Score: 438
Period size: 108 Copynumber: 2.0 Consensus size: 108
61517555 AAAAGCTAAA
61517565 AATCAAGGCAAAGGTCTTGGAAACCAATATTTTCAAGATCTAGTGTCAAGGTCATTTTTTCAAAG
1 AATCAAGGCAAAGGTCTTGGAAACCAATATTTTCAAGATCTAGTGTCAAGGTCATTTTTTCAAAG
61517630 ATCTAGTGAAGACAAATCCCGTTTCGTGATGCATGATCTTATG
66 ATCTAGTGAAGACAAATCCCGTTTCGTGATGCATGATCTTATG
61517673 AATCAAGGCAAAGGTCTTGGAAACCAATATTTTCAAGATCTAGTGTCAAGGTCATTTTTTCAAAG
1 AATCAAGGCAAAGGTCTTGGAAACCAATATTTTCAAGATCTAGTGTCAAGGTCATTTTTTCAAAG
61517738 ATCTAGTGAAGACAAATCCCGTTTCGTGATGCATGATCTTATG
66 ATCTAGTGAAGACAAATCCCGTTTCGTGATGCATGATCTTATG
61517781 AAT
1 AAT
61517784 GATTTAGCTC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 111 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (108 bp):
AATCAAGGCAAAGGTCTTGGAAACCAATATTTTCAAGATCTAGTGTCAAGGTCATTTTTTCAAAG
ATCTAGTGAAGACAAATCCCGTTTCGTGATGCATGATCTTATG
Found at i:61522975 original size:16 final size:16
Alignment explanation
Indices: 61522954--61522986 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
61522944 TTCGCTGTAT
61522954 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
61522970 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
61522986 T
1 T
61522987 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:61523354 original size:120 final size:121
Alignment explanation
Indices: 61523203--61523495 Score: 475
Period size: 120 Copynumber: 2.4 Consensus size: 121
61523193 ATCATATTTA
* *
61523203 AACATAATTATTATTAAATATATTATAATTAAAACATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
61523268 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA-ATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
* *
61523323 AACATTATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
61523388 TATTCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
* *
61523444 AA-ATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAA-TAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
61523496 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
120 154 0.96
121 7 0.04
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (121 bp):
AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
Done.