Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 20 of 208
Found at i:7954308 original size:100 final size:104
Alignment explanation
Indices: 7954128--7954377 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
7954118 TGATAATAAC
**
7954128 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7954193 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7954230 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
*
7954293 TCCCAGGCATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7954335 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7954378 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7954493 original size:13 final size:13
Alignment explanation
Indices: 7954472--7954503 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7954462 GCTTGGATCA
*
7954472 TCATCAAATAAAT
1 TCATAAAATAAAT
7954485 TCATAAAATAAAT
1 TCATAAAATAAAT
7954498 TCATAA
1 TCATAA
7954504 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7954750 original size:30 final size:30
Alignment explanation
Indices: 7954715--7954772 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7954705 CCTCGACTCT
*
7954715 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7954745 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7954773 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7961949 original size:13 final size:13
Alignment explanation
Indices: 7961931--7961959 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7961921 CTGTTAGTCA
7961931 AATAAGTTTGTTT
1 AATAAGTTTGTTT
7961944 AATAAGTTTGTTT
1 AATAAGTTTGTTT
7961957 AAT
1 AAT
7961960 CTTGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (13 bp):
AATAAGTTTGTTT
Found at i:7962269 original size:29 final size:29
Alignment explanation
Indices: 7962218--7962291 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
7962208 GAAATTTAAA
* * * *
7962218 TATTAAAAAAATGAAAATTTATATAAACC
1 TATTAAAAATATGAAAAATTATAAAAAAC
*
7962247 TA-TAAAAATATGAAAAGATTATAAAAAAG
1 TATTAAAAATATGAAAA-ATTATAAAAAAC
7962276 TATTAAAAATAT-AAAA
1 TATTAAAAATATGAAAA
7962292 TTCTAATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
28 13 0.34
29 16 0.42
30 9 0.24
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (29 bp):
TATTAAAAATATGAAAAATTATAAAAAAC
Found at i:7962379 original size:31 final size:30
Alignment explanation
Indices: 7962322--7962381 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
7962312 ATTTATATAA
*
7962322 TTTATAAAACATATTCAGAATATTTAAAAT
1 TTTATAAAACATATTCAAAATATTTAAAAT
*
7962352 TTTATAAAAGCATATT-AAAATTCTTTAAAA
1 TTTATAAAA-CATATTCAAAA-TATTTAAAA
7962382 ACCATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTATAAAACATATTCAAAATATTTAAAAT
Found at i:7962382 original size:22 final size:21
Alignment explanation
Indices: 7962345--7962387 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
7962335 TTCAGAATAT
*
7962345 TTAAAATTTTATAAAAGCATA
1 TTAAAATTTTATAAAACCATA
7962366 TTAAAATTCTT-TAAAAACCATA
1 TTAAAATT-TTAT-AAAACCATA
7962388 AAATACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.37
Consensus pattern (21 bp):
TTAAAATTTTATAAAACCATA
Found at i:7964301 original size:2 final size:2
Alignment explanation
Indices: 7964294--7964331 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7964284 AGACACTCAT
7964294 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7964332 TTAAAACACC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7977219 original size:17 final size:17
Alignment explanation
Indices: 7977184--7977220 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7977174 ATATATGTTC
*
7977184 TATTGTTGGAATTAAAT
1 TATTGTTGGAAATAAAT
*
7977201 TATTGTTGGAAATATAT
1 TATTGTTGGAAATAAAT
7977218 TAT
1 TAT
7977221 CGAATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAAATAAAT
Found at i:7977385 original size:21 final size:21
Alignment explanation
Indices: 7977364--7977426 Score: 89
Period size: 19 Copynumber: 3.2 Consensus size: 21
7977354 TTTTACTTTT
*
7977364 TGTTCAGCTCTTACGAGCTTT
1 TGTTCAGCTCTTACGAGCTTC
7977385 TGTTCAG--CTTACGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
7977404 TGTTCAGCT-TT-CGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
7977423 TGTT
1 TGTT
7977427 GGTGTATTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 30 0.77
20 2 0.05
21 7 0.18
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.43
Consensus pattern (21 bp):
TGTTCAGCTCTTACGAGCTTC
Found at i:7977397 original size:19 final size:19
Alignment explanation
Indices: 7977373--7977426 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
7977363 TTGTTCAGCT
*
7977373 CTTACGAGCTTTTGTTCAG
1 CTTACGAGCTTCTGTTCAG
7977392 CTTACGAGCTTCTGTTCAG
1 CTTACGAGCTTCTGTTCAG
*
7977411 CTTTCGAGCTTCTGTT
1 CTTACGAGCTTCTGTT
7977427 GGTGTATTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (19 bp):
CTTACGAGCTTCTGTTCAG
Found at i:7977666 original size:18 final size:17
Alignment explanation
Indices: 7977645--7977688 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7977635 ATGATGGTAC
*
7977645 ATGATATATTGATATGTA
1 ATGATATATTGAAATG-A
*
7977663 ATGATATATTGAAATGG
1 ATGATATATTGAAATGA
7977680 ATGATATAT
1 ATGATATAT
7977689 GTATATGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (17 bp):
ATGATATATTGAAATGA
Found at i:7982298 original size:20 final size:20
Alignment explanation
Indices: 7982269--7982306 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7982259 TATGAAATTA
*
7982269 GGATAGTTTTATATTATTTG
1 GGATAGTTTTACATTATTTG
*
7982289 GGATATTTTTACATTATT
1 GGATAGTTTTACATTATT
7982307 AATATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (20 bp):
GGATAGTTTTACATTATTTG
Found at i:7985504 original size:105 final size:101
Alignment explanation
Indices: 7985340--7985537 Score: 247
Period size: 105 Copynumber: 1.9 Consensus size: 101
7985330 ATTTGACGGA
*** * *
7985340 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTAGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
7985405 TGAAAAGACCATAACT-GGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTAGGG-TATGACACCTTGAACG
*
7985441 TAAGACCATGGTTGGACCATGGCAGTATAAATACATCTGTAAGACCATAGCCCA-GCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--ATAAATA-A-ATGTAAGACCATAG-CCAGGCTATGGCAT
* * *
7985505 TCTGATGATAATACCATAACTAGGGTATGACAC
61 TCTAATGAAAAGACCATAACTAGGGTATGACAC
7985538 TACAAATGTA
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
101 24 0.29
103 4 0.05
104 1 0.01
105 48 0.59
106 5 0.06
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
TGAAAAGACCATAACTAGGGTATGACACCTTGAACG
Found at i:7985549 original size:105 final size:101
Alignment explanation
Indices: 7985340--7985565 Score: 242
Period size: 105 Copynumber: 2.2 Consensus size: 101
7985330 ATTTGACGGA
*** * *
7985340 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTAGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
**
7985405 TGAAAAGACCATAACTGGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
*
7985441 TAAGACCATGGTTGGACCATGGCAGTATAAATACATCTGTAAGACCATAGCCCA-GCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--ATAAATA-A-ATGTAAGACCATAG-CCAGGCTATGGCAT
* * * *
7985505 TCTGATGATAATACCATAACTAGGG-TATGACA-CTACAAATG
61 TCTAATGAAAAGACCATAACT-GGGTTATGACACCT-CAAACG
**
7985546 TAAGACCATGGCAGGACCAT
1 TAAGACCATGGTTGGACCAT
7985566 ACCAATACAT
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
101 24 0.23
103 4 0.04
104 3 0.03
105 68 0.65
106 5 0.05
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
Found at i:7987159 original size:12 final size:12
Alignment explanation
Indices: 7987117--7987160 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
7987107 GTTTTAGAAA
* *
7987117 TAATATTAATTT
1 TAATATTTATAT
* *
7987129 TAATATATATAA
1 TAATATTTATAT
7987141 TAATATTTATAT
1 TAATATTTATAT
7987153 TAATATTT
1 TAATATTT
7987161 TTCTAACACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TAATATTTATAT
Found at i:7989057 original size:21 final size:21
Alignment explanation
Indices: 7989027--7989076 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7989017 CTGAACAGAA
7989027 GAACAAAAGCTCGAAAGAGCT
1 GAACAAAAGCTCGAAAGAGCT
* * *
7989048 GAACAGAAGCTCGTAAGAGTT
1 GAACAAAAGCTCGAAAGAGCT
7989069 GAACAAAA
1 GAACAAAA
7989077 ACTCATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.12
Consensus pattern (21 bp):
GAACAAAAGCTCGAAAGAGCT
Found at i:7995664 original size:21 final size:21
Alignment explanation
Indices: 7995640--7995708 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
7995630 ACATACAAGA
7995640 AATTATGAAAGAGAGAAGCAG
1 AATTATGAAAGAGAGAAGCAG
* * **
7995661 AATTATCAGCAG-GTCAAG-AG
1 AATTATGA-AAGAGAGAAGCAG
7995681 AAATTATGAAAGAGAGAAGCAG
1 -AATTATGAAAGAGAGAAGCAG
7995703 AATTAT
1 AATTAT
7995709 CAGCAGGTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
20 4 0.11
21 28 0.78
22 4 0.11
ACGTcount: A:0.49, C:0.07, G:0.25, T:0.19
Consensus pattern (21 bp):
AATTATGAAAGAGAGAAGCAG
Found at i:7995684 original size:42 final size:42
Alignment explanation
Indices: 7995637--7995723 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
7995627 ATAACATACA
7995637 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
1 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
7995679 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
1 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
7995721 AGA
1 AGA
7995724 TTAGCCCAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.48, C:0.09, G:0.26, T:0.16
Consensus pattern (42 bp):
AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
Found at i:7999481 original size:18 final size:18
Alignment explanation
Indices: 7999458--7999492 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7999448 ATAAGAAAAT
7999458 AAACATAATAG-AAAGTAA
1 AAACAT-ATAGCAAAGTAA
7999476 AAACATATAGCAAAGTA
1 AAACATATAGCAAAGTA
7999493 GAATTCATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (18 bp):
AAACATATAGCAAAGTAA
Found at i:8002080 original size:23 final size:24
Alignment explanation
Indices: 8002031--8002083 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
8002021 CATTAACATG
* *
8002031 AAAAAAATGTTACCTAACTACTTTT
1 AAAAAAACGTTACCTAACTA-TCTT
*
8002056 AAAAAAACGTTATCTAACT-TCTT
1 AAAAAAACGTTACCTAACTATCTT
8002079 AAAAA
1 AAAAA
8002084 GGAAATTTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.32
25 17 0.68
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAAAAACGTTACCTAACTATCTT
Found at i:8009846 original size:3 final size:3
Alignment explanation
Indices: 8009838--8009879 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
8009828 CTCTCGCTCC
*
8009838 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8009880 AGAAAAGAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8014864 original size:86 final size:87
Alignment explanation
Indices: 8014715--8014888 Score: 296
Period size: 86 Copynumber: 2.0 Consensus size: 87
8014705 GGATTGTTCA
* * * *
8014715 ACTGTACCAAGTTTAGTGAGTTCACTAGTTATGTAGATGTCATATTGTGATATGCGGTGTGCTCA
1 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
8014780 TGGTA-TGACCCTGCATATAGC
66 TGGTATTGACCCTGCATATAGC
8014801 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
1 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
*
8014866 TGGTATTGACGCTGCATATAGC
66 TGGTATTGACCCTGCATATAGC
8014888 A
1 A
8014889 GGAACCTAGT
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
86 66 0.80
87 16 0.20
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (87 bp):
ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
TGGTATTGACCCTGCATATAGC
Found at i:8023010 original size:13 final size:14
Alignment explanation
Indices: 8022992--8023024 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8022982 CAATATATCT
8022992 ATTATTTAA-CTAA
1 ATTATTTAAGCTAA
*
8023005 ATTATTTAAGGTAA
1 ATTATTTAAGCTAA
8023019 ATTATT
1 ATTATT
8023025 CTCTTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (14 bp):
ATTATTTAAGCTAA
Found at i:8025350 original size:31 final size:31
Alignment explanation
Indices: 8025315--8025378 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
8025305 CATTCTTTAC
8025315 AAAATCGAGACTCTGGTAGATTTCTATGACT
1 AAAATCGAGACTCTGGTAGATTTCTATGACT
*
8025346 AAAATCTAGACTCTGGTAGATTTCTATGACT
1 AAAATCGAGACTCTGGTAGATTTCTATGACT
8025377 AA
1 AA
8025379 CTTTCCTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (31 bp):
AAAATCGAGACTCTGGTAGATTTCTATGACT
Found at i:8038282 original size:9 final size:9
Alignment explanation
Indices: 8038268--8038301 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8038258 CAAAAGAATG
8038268 ACATATTAT
1 ACATATTAT
*
8038277 ACATATAAT
1 ACATATTAT
8038286 GACATATTAT
1 -ACATATTAT
8038296 ACATAT
1 ACATAT
8038302 ACCCATCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (9 bp):
ACATATTAT
Found at i:8038288 original size:19 final size:19
Alignment explanation
Indices: 8038264--8038302 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8038254 GGAGCAAAAG
8038264 AATGACATATTATACATAT
1 AATGACATATTATACATAT
8038283 AATGACATATTATACATAT
1 AATGACATATTATACATAT
8038302 A
1 A
8038303 CCCATCAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (19 bp):
AATGACATATTATACATAT
Found at i:8039927 original size:54 final size:54
Alignment explanation
Indices: 8039863--8039970 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
8039853 TTCTCATCAG
8039863 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
1 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
8039917 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
1 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
8039971 GTAAGTTCAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (54 bp):
CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
Found at i:8041378 original size:52 final size:52
Alignment explanation
Indices: 8041299--8041463 Score: 207
Period size: 46 Copynumber: 3.2 Consensus size: 52
8041289 TACTTCTGAT
* *
8041299 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
* ** *
8041352 CAAGTGAAAAGTGATAATTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
8041404 C------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
*
8041450 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
8041464 GCTACACTTA
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
46 42 0.45
52 40 0.43
53 12 0.13
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
Found at i:8041471 original size:37 final size:37
Alignment explanation
Indices: 8041427--8041535 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
8041417 GATAGCTTTA
8041427 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
8041464 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
8041501 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
8041536 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:8042850 original size:49 final size:49
Alignment explanation
Indices: 8042789--8042981 Score: 314
Period size: 49 Copynumber: 3.9 Consensus size: 49
8042779 ATGTGAACAT
8042789 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
8042839 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
8042888 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
8042937 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
8042982 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:8044779 original size:54 final size:54
Alignment explanation
Indices: 8044715--8044822 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
8044705 TTCTCATCAG
8044715 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
1 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
8044769 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
1 CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
8044823 GTAAGTTCAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (54 bp):
CTAAAACACCATGGAAGGGCTTCTTCAAGCTGGTTCTTCATATTTTTATTACAA
Found at i:8046230 original size:52 final size:52
Alignment explanation
Indices: 8046151--8046315 Score: 207
Period size: 46 Copynumber: 3.2 Consensus size: 52
8046141 TACTTCTGAT
* *
8046151 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGCGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
* ** *
8046204 CAAGTGAAAAGTGATAATTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
8046256 C------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
*
8046302 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
8046316 GCTACACTTA
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
46 42 0.45
52 40 0.43
53 12 0.13
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
Found at i:8046323 original size:37 final size:37
Alignment explanation
Indices: 8046279--8046387 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
8046269 GATAGCTTTA
8046279 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
8046316 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
8046353 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
8046388 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:8047539 original size:21 final size:21
Alignment explanation
Indices: 8047499--8047539 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8047489 AAATTTTAAT
*
8047499 AAATAAAAAATATTAAAAATC
1 AAATAAAAAATAATAAAAATC
* *
8047520 AAATTAAAAATAATATAAAT
1 AAATAAAAAATAATAAAAAT
8047540 ATATATTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATAAAAAATAATAAAAATC
Found at i:8051346 original size:20 final size:19
Alignment explanation
Indices: 8051323--8051400 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 19
8051313 ACAAAAAAAT
8051323 AAAATAATTTTCAAAAATTC
1 AAAATAATTTT-AAAAATTC
8051343 AAAATAAATTTT-AAAATTC
1 AAAAT-AATTTTAAAAATTC
8051362 AAAAT-ATTTATAAAAATTTC
1 AAAATAATTT-TAAAAA-TTC
8051382 AAAATTTATATTTTAAAAA
1 AAAA--TA-ATTTTAAAAA
8051401 AATTATAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.08
18 1 0.02
19 16 0.32
20 12 0.24
21 6 0.12
22 1 0.02
23 6 0.12
24 4 0.08
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTC
Found at i:8051362 original size:27 final size:27
Alignment explanation
Indices: 8051332--8051387 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
8051322 TAAAATAATT
*
8051332 TTCAAAA-ATTCAAAATAAATTTTAAAA
1 TTCAAAATATTCAAAA-AAATTTCAAAA
* *
8051359 TTCAAAATATTTATAAAAATTTCAAAA
1 TTCAAAATATTCAAAAAAATTTCAAAA
8051386 TT
1 TT
8051388 TATATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (27 bp):
TTCAAAATATTCAAAAAAATTTCAAAA
Found at i:8051414 original size:20 final size:20
Alignment explanation
Indices: 8051389--8051429 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8051379 TTCAAAATTT
*
8051389 ATATTTTAAAAAAATTATAA
1 ATATTTCAAAAAAATTATAA
*
8051409 ATATTTCAAAAAAATTCTAA
1 ATATTTCAAAAAAATTATAA
8051429 A
1 A
8051430 AATATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
ATATTTCAAAAAAATTATAA
Found at i:8063121 original size:24 final size:26
Alignment explanation
Indices: 8063089--8063137 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
8063079 ATCATAAATA
8063089 TATAATTTTAT-AATTTT-AATAATC
1 TATAATTTTATAAATTTTAAATAATC
*
8063113 TATATTTTTATAAATTTTAAATAAT
1 TATAATTTTATAAATTTTAAATAAT
8063138 TAAATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.45
25 6 0.27
26 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAATTTTATAAATTTTAAATAATC
Found at i:8063862 original size:21 final size:21
Alignment explanation
Indices: 8063837--8063883 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
8063827 TATAAAACTA
*
8063837 ATAAAA-CATATTTAAAATTTT
1 ATAAAATCATA-TTAAAATTCT
8063858 ATAAAATCATATTAAAATTCT
1 ATAAAATCATATTAAAATTCT
8063879 ATAAA
1 ATAAA
8063884 CACAATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAATCATATTAAAATTCT
Found at i:8064395 original size:19 final size:19
Alignment explanation
Indices: 8064368--8064525 Score: 69
Period size: 19 Copynumber: 8.4 Consensus size: 19
8064358 AGCTTTTATG
*
8064368 ATAATTTTTAATAATTTTT
1 ATAAATTTTAATAATTTTT
8064387 ATAAATTTTAAT--TTTTT
1 ATAAATTTTAATAATTTTT
* ** * *
8064404 ACGATTTTTTAAAGAATTTTA
1 A-TAAATTTT-AATAATTTTT
* *
8064425 ATACATTCTAATAATATTTTT
1 ATAAATTTTAAT-A-ATTTTT
* *
8064446 AATATATTTTATTAA-TTTT
1 -ATAAATTTTAATAATTTTT
** *
8064465 ATAAA--AAAATATTTTTT
1 ATAAATTTTAATAATTTTT
*
8064482 AT-AA-TTTATTAATTTTT
1 ATAAATTTTAATAATTTTT
* * *
8064499 ATAACTTTTTATAATATTT
1 ATAAATTTTAATAATTTTT
8064518 ATAAATTT
1 ATAAATTT
8064526 ATATCAATTT
Statistics
Matches: 99, Mismatches: 29, Indels: 22
0.66 0.19 0.15
Matches are distributed among these distances:
16 5 0.05
17 22 0.22
18 10 0.10
19 36 0.36
20 6 0.06
21 11 0.11
22 9 0.09
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (19 bp):
ATAAATTTTAATAATTTTT
Found at i:8064495 original size:33 final size:35
Alignment explanation
Indices: 8064437--8064502 Score: 100
Period size: 33 Copynumber: 1.9 Consensus size: 35
8064427 ACATTCTAAT
*
8064437 AATATTTTTAATATATTTTATTAA-TTTTATAAAAA
1 AATATTTTT-ATATAATTTATTAATTTTTATAAAAA
8064472 AATATTTTT-TATAATTTATTAATTTTTATAA
1 AATATTTTTATATAATTTATTAATTTTTATAA
8064503 CTTTTTATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 12 0.41
34 8 0.28
35 9 0.31
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (35 bp):
AATATTTTTATATAATTTATTAATTTTTATAAAAA
Found at i:8064518 original size:29 final size:29
Alignment explanation
Indices: 8064477--8064542 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8064467 AAAAAAATAT
* *
8064477 TTTTTAT-A-ATTTATTAATTTTTAT-AA
1 TTTTTATAATATTTATAAATTTATATCAA
8064503 CTTTTTATAATATTTATAAATTTATATCAA
1 -TTTTTATAATATTTATAAATTTATATCAA
*
8064533 TTTTAATAAT
1 TTTTTATAAT
8064543 TCTTTTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 7 0.21
28 1 0.03
29 23 0.70
30 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTTTATAATATTTATAAATTTATATCAA
Found at i:8064543 original size:19 final size:18
Alignment explanation
Indices: 8064477--8064572 Score: 74
Period size: 19 Copynumber: 5.3 Consensus size: 18
8064467 AAAAAAATAT
8064477 TTTTTATAATTTAT-TAA
1 TTTTTATAATTTATATAA
*
8064494 TTTTTATAACTTTTTATAA
1 TTTTTATAA-TTTATATAA
*
8064513 TATTTATAAATTTATATCAA
1 TTTTTAT-AATTTATAT-AA
* * *
8064533 TTTTAATAATTCTTTTATAT
1 TTTTTATAA-T-TTATATAA
8064553 TTTTTAT-ATTT-TA-AA
1 TTTTTATAATTTATATAA
8064568 TTTTT
1 TTTTT
8064573 TTATGGGTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
15 6 0.09
16 2 0.03
17 11 0.17
18 5 0.08
19 18 0.28
20 17 0.27
21 5 0.08
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTATAATTTATATAA
Found at i:8064557 original size:9 final size:10
Alignment explanation
Indices: 8064475--8064564 Score: 59
Period size: 9 Copynumber: 9.5 Consensus size: 10
8064465 ATAAAAAAAT
8064475 ATTTTTTATA
1 ATTTTTTATA
*
8064485 A-TTTAT-TA
1 ATTTTTTATA
8064493 A-TTTTTATA
1 ATTTTTTATA
*
8064502 ACTTTTTATA
1 ATTTTTTATA
*
8064512 A-TATTTATA
1 ATTTTTTATA
* *
8064521 AATTTATATCA
1 ATTTTTTAT-A
*
8064532 A-TTTTAATA
1 ATTTTTTATA
8064541 ATTCTTTTAT-
1 ATT-TTTTATA
8064551 ATTTTTTAT-
1 ATTTTTTATA
8064560 ATTTT
1 ATTTT
8064565 AAATTTTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
8 7 0.11
9 28 0.42
10 24 0.36
11 7 0.11
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:8065171 original size:23 final size:22
Alignment explanation
Indices: 8065136--8065178 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8065126 GACATGAGTG
8065136 AATTAGAGCTGAAACAAAAAAAC
1 AATTAGAGCTG-AACAAAAAAAC
* *
8065159 AATTGGAGTTGAACAAAAAA
1 AATTAGAGCTGAACAAAAAA
8065179 GCCCTACTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.58, C:0.09, G:0.16, T:0.16
Consensus pattern (22 bp):
AATTAGAGCTGAACAAAAAAAC
Found at i:8078190 original size:27 final size:27
Alignment explanation
Indices: 8078160--8078214 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
8078150 ATAGGTGGTA
* *
8078160 CCTATCTGGCAAGAGCCACTGGTGACT
1 CCTATCTGACAAGAGCCACAGGTGACT
* *
8078187 CCTATCTGATAAGTGCCACAGGTGACT
1 CCTATCTGACAAGAGCCACAGGTGACT
8078214 C
1 C
8078215 ATTGTTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (27 bp):
CCTATCTGACAAGAGCCACAGGTGACT
Found at i:8078450 original size:103 final size:103
Alignment explanation
Indices: 8078229--8078471 Score: 350
Period size: 103 Copynumber: 2.4 Consensus size: 103
8078219 TTAAATAAAA
* * *
8078229 TAAAA-TTACATTAATAAAAAATCACAAAAGACTAAACTAAACACTAACAATTTATATAATCTAA
1 TAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAATCAAA
*
8078293 TCATAAATTACTAACAAAATAACTATAAAATTATTATT
66 TCATAAATTACTAACAAAATAACTATAAAAATATTATT
* * *
8078331 TTAAATTTACACTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATTTATA-AA-CAAA
1 TAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAATCAAA
8078394 TCATAAATTACTAACAAAATAACTATAAAAATATT-TT
66 TCATAAATTACTAACAAAATAACTATAAAAATATTATT
* *
8078431 TAAAACATTTTAGATTACTAAAAAATCACAAAACACAAAAC
1 T-AAA-A-TTTACATTACTAAAAAATCACAAAACACTAAAC
8078472 ACTAACATAA
Statistics
Matches: 125, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
100 3 0.02
101 39 0.31
102 7 0.06
103 76 0.61
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (103 bp):
TAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAATCAAA
TCATAAATTACTAACAAAATAACTATAAAAATATTATT
Found at i:8079521 original size:27 final size:26
Alignment explanation
Indices: 8079490--8079557 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
8079480 CGTTCCGGGT
8079490 TCGGGTCCTTTAGAAAGAGGGTTCATG
1 TCGGGTCCTTT-GAAAGAGGGTTCATG
* *
8079517 TCGGGTCCGATTGAGAGAGGGTTCATG
1 TCGGGTCC-TTTGAAAGAGGGTTCATG
8079544 TCGGGTCCTCTTGA
1 TCGGGTCCT-TTGA
8079558 TAATACTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (26 bp):
TCGGGTCCTTTGAAAGAGGGTTCATG
Found at i:8084232 original size:122 final size:123
Alignment explanation
Indices: 8084014--8084263 Score: 396
Period size: 122 Copynumber: 2.0 Consensus size: 123
8084004 GAAAAAATAC
* * *
8084014 AAAAAAAAACTAACACAAAAATTATTAGTCATTTATTAGATATTCTAGACTACAGTGGTATTTCA
1 AAAAAAAAACTAACACAAAAATTATTAATCATATATTAGATACTCTAGACTACAGTGGTATTTCA
*
8084079 GTTCCTGGAAGTAGTGAAACTTACCTGTACCTAGCAACAGTACTACCTTTTGCATATT
66 GTTCCTGGAAGTAGTGAAACTTACCTGTACCTAGCAACAGTACTACCTTTTACATATT
* * *
8084137 AAAAAAAAACCT-A-ACAAATATTATTAATCATATATTAGATACTCTAGATTATAGTGGTATTTC
1 AAAAAAAAA-CTAACACAAAAATTATTAATCATATATTAGATACTCTAGACTACAGTGGTATTTC
*
8084200 AGTTCCTGGAAGTAGTGAAACTTACCTGTACCTAGCAACAGTACTGCCTTTTACATATT
65 AGTTCCTGGAAGTAGTGAAACTTACCTGTACCTAGCAACAGTACTACCTTTTACATATT
*
8084259 CAAAA
1 AAAAA
8084264 GCAAAACACC
Statistics
Matches: 117, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
122 105 0.90
123 10 0.09
124 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (123 bp):
AAAAAAAAACTAACACAAAAATTATTAATCATATATTAGATACTCTAGACTACAGTGGTATTTCA
GTTCCTGGAAGTAGTGAAACTTACCTGTACCTAGCAACAGTACTACCTTTTACATATT
Found at i:8088464 original size:25 final size:25
Alignment explanation
Indices: 8088405--8088464 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 25
8088395 AATATTTTGA
* *
8088405 TAAATATAATAAATGTTTTATTATAT
1 TAAATATAA-ATATATTTTATTATAT
8088431 TAAA-A-AAATATATTTTA-TAGTAT
1 TAAATATAAATATATTTTATTA-TAT
8088454 TAAATATAAAT
1 TAAATATAAAT
8088465 TTTATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
22 2 0.07
23 15 0.52
24 3 0.10
25 5 0.17
26 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
TAAATATAAATATATTTTATTATAT
Found at i:8104862 original size:35 final size:35
Alignment explanation
Indices: 8104794--8104862 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
8104784 CTTTCTGAGG
* *
8104794 TTGGTAAATATGGAAAGTGATATTCAAATATATGC
1 TTGGCAAATATGGAAAGTGATATTCAAAGATATGC
* *
8104829 TTGGCAAATATGGAAAGTGATCTTCAGAGATATG
1 TTGGCAAATATGGAAAGTGATATTCAAAGATATG
8104863 TGATCCTAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (35 bp):
TTGGCAAATATGGAAAGTGATATTCAAAGATATGC
Found at i:8106746 original size:23 final size:23
Alignment explanation
Indices: 8106720--8106792 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
8106710 AGTGCCACAT
8106720 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
8106743 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
8106766 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
8106789 TGAT
1 TGAT
8106793 CAATAACACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:8106892 original size:8 final size:8
Alignment explanation
Indices: 8106879--8106907 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8106869 ACCCGGGACT
8106879 CACTGTAA
1 CACTGTAA
8106887 CACTGTAA
1 CACTGTAA
8106895 CACTGTAA
1 CACTGTAA
8106903 CACTG
1 CACTG
8106908 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:8107052 original size:18 final size:17
Alignment explanation
Indices: 8107026--8107064 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8107016 ATTTTCCTTC
8107026 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
8107043 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
8107061 CACA
1 CACA
8107065 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:8111967 original size:564 final size:564
Alignment explanation
Indices: 8110899--8112034 Score: 2263
Period size: 564 Copynumber: 2.0 Consensus size: 564
8110889 ATCGATATGG
8110899 GCGGCCCATCTAATGATGCATCGTACCTTGGCCCTTTTAAATGATCGTTACCACTGGTCTTACAT
1 GCGGCCCATCTAATGATGCATCGTACCTTGGCCCTTTTAAATGATCGTTACCACTGGTCTTACAT
8110964 GGGTGCTGATGTGGAAACTTATGTGAAAACTTGTCTAGTATGCCAACAGGACAACGTCGAGTTAA
66 GGGTGCTGATGTGGAAACTTATGTGAAAACTTGTCTAGTATGCCAACAGGACAACGTCGAGTTAA
8111029 AGGCTCCAGCCGGTTTGCTACAACCCTTGCCCATTCTAGAAAGACTATGGGAGAGTGTATCCATG
131 AGGCTCCAGCCGGTTTGCTACAACCCTTGCCCATTCTAGAAAGACTATGGGAGAGTGTATCCATG
8111094 GATTTTATTGTTGGTTTGCCTAAGTCTGATGGGTTTACAAGCATTCTTATTGTGGTGGACAGGTT
196 GATTTTATTGTTGGTTTGCCTAAGTCTGATGGGTTTACAAGCATTCTTATTGTGGTGGACAGGTT
8111159 TTCGAAGTATGCGACATTTATTCCGGCTACTAAGGAGTGCCCTACTGAAGAGGTAACTCGTTTAT
261 TTCGAAGTATGCGACATTTATTCCGGCTACTAAGGAGTGCCCTACTGAAGAGGTAACTCGTTTAT
8111224 TCGTCAGACACGTAGTGAAATATTGAGGAGTGCCACTGTCTATTATCAGTGATCGAGATGGATGA
326 TCGTCAGACACGTAGTGAAATATTGAGGAGTGCCACTGTCTATTATCAGTGATCGAGATGGATGA
8111289 TTTACTGGCCGGTTCTGGACGGAGTTGTTTAAGTCAATGGGCTCAAACTTGAACTTTTCCATAAG
391 TTTACTGGCCGGTTCTGGACGGAGTTGTTTAAGTCAATGGGCTCAAACTTGAACTTTTCCATAAG
8111354 CATGTATCCACAAACTGATGGGCAAACCGAACGAATGAATGCATTGTTGGAGACATATCTTTAAC
456 CATGTATCCACAAACTGATGGGCAAACCGAACGAATGAATGCATTGTTGGAGACATATCTTTAAC
8111419 ACTACGTGAATACCACACAAAATGATTGGCCATAGTTGTTGGAT
521 ACTACGTGAATACCACACAAAATGATTGGCCATAGTTGTTGGAT
8111463 GCGGCCCATCTAATGATGCATCGTACCTTGGCCCTTTTAAATGATCGTTACCACTGGTCTTACAT
1 GCGGCCCATCTAATGATGCATCGTACCTTGGCCCTTTTAAATGATCGTTACCACTGGTCTTACAT
8111528 GGGTGCTGATGTGGAAACTTATGTGAAAACTTGTCTAGTATGCCAACAGGACAACGTCGAGTTAA
66 GGGTGCTGATGTGGAAACTTATGTGAAAACTTGTCTAGTATGCCAACAGGACAACGTCGAGTTAA
8111593 AGGCTCCAGCCGGTTTGCTACAACCCTTGCCCATTCTAGAAAGACTATGGGAGAGTGTATCCATG
131 AGGCTCCAGCCGGTTTGCTACAACCCTTGCCCATTCTAGAAAGACTATGGGAGAGTGTATCCATG
8111658 GATTTTATTGTTGGTTTGCCTAAGTCTGATGGGTTTACAAGCATTCTTATTGTGGTGGACAGGTT
196 GATTTTATTGTTGGTTTGCCTAAGTCTGATGGGTTTACAAGCATTCTTATTGTGGTGGACAGGTT
8111723 TTCGAAGTATGCGACATTTATTCCGGCTACTAAGGAGTGCCCTACTGAAGAGGTAACTCGTTTAT
261 TTCGAAGTATGCGACATTTATTCCGGCTACTAAGGAGTGCCCTACTGAAGAGGTAACTCGTTTAT
8111788 TCGTCAGACACGTAGTGAAATATTGAGGAGTGCCACTGTCTATTATCAGTGATCGAGATGGATGA
326 TCGTCAGACACGTAGTGAAATATTGAGGAGTGCCACTGTCTATTATCAGTGATCGAGATGGATGA
8111853 TTTACTGGCCGGTTCTGGACGGAGTTGTTTAAGTCAATGGGCTCAAACTTGAACTTTTCCATAAG
391 TTTACTGGCCGGTTCTGGACGGAGTTGTTTAAGTCAATGGGCTCAAACTTGAACTTTTCCATAAG
8111918 CATGTATCCACAAACTGATGGGCAAACCGAACGAATGAATGCATTGTTGGAGACATATCTTTAAC
456 CATGTATCCACAAACTGATGGGCAAACCGAACGAATGAATGCATTGTTGGAGACATATCTTTAAC
8111983 ACTACGTGAATACCACACAAAATGATTGGCCATAGTTGTTGGAT
521 ACTACGTGAATACCACACAAAATGATTGGCCATAGTTGTTGGAT
*
8112027 GTGGCCCA
1 GCGGCCCA
8112035 ATTTTCATAC
Statistics
Matches: 571, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
564 571 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (564 bp):
GCGGCCCATCTAATGATGCATCGTACCTTGGCCCTTTTAAATGATCGTTACCACTGGTCTTACAT
GGGTGCTGATGTGGAAACTTATGTGAAAACTTGTCTAGTATGCCAACAGGACAACGTCGAGTTAA
AGGCTCCAGCCGGTTTGCTACAACCCTTGCCCATTCTAGAAAGACTATGGGAGAGTGTATCCATG
GATTTTATTGTTGGTTTGCCTAAGTCTGATGGGTTTACAAGCATTCTTATTGTGGTGGACAGGTT
TTCGAAGTATGCGACATTTATTCCGGCTACTAAGGAGTGCCCTACTGAAGAGGTAACTCGTTTAT
TCGTCAGACACGTAGTGAAATATTGAGGAGTGCCACTGTCTATTATCAGTGATCGAGATGGATGA
TTTACTGGCCGGTTCTGGACGGAGTTGTTTAAGTCAATGGGCTCAAACTTGAACTTTTCCATAAG
CATGTATCCACAAACTGATGGGCAAACCGAACGAATGAATGCATTGTTGGAGACATATCTTTAAC
ACTACGTGAATACCACACAAAATGATTGGCCATAGTTGTTGGAT
Found at i:8112940 original size:35 final size:35
Alignment explanation
Indices: 8112872--8112940 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
8112862 CTTTCTGAGG
* *
8112872 TTGGTAAATATGGAAAGTGATCTTCAAATATATGC
1 TTGGAAAATATGGAAAGTGATCTTCAAAGATATGC
** *
8112907 TTGGAAAATATGGAGGGTGATCTTCAGAGATATG
1 TTGGAAAATATGGAAAGTGATCTTCAAAGATATG
8112941 TAATCCTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (35 bp):
TTGGAAAATATGGAAAGTGATCTTCAAAGATATGC
Found at i:8117255 original size:34 final size:34
Alignment explanation
Indices: 8117207--8117272 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
8117197 GTAAAGGTTA
8117207 GAAGCTGGTCGGAGTATCATCACACTATCCCTTG
1 GAAGCTGGTCGGAGTATCATCACACTATCCCTTG
*
8117241 GAAGTTGGTCGGAGTATCATCACACTATCCCT
1 GAAGCTGGTCGGAGTATCATCACACTATCCCT
8117273 CAGCTCATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (34 bp):
GAAGCTGGTCGGAGTATCATCACACTATCCCTTG
Found at i:8120115 original size:9 final size:9
Alignment explanation
Indices: 8120101--8120143 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
8120091 TTTGGTTAAA
8120101 AATTACCCG
1 AATTACCCG
8120110 AATTACCCG
1 AATTACCCG
8120119 AATTACCCG
1 AATTACCCG
*
8120128 AATTAACCG
1 AATTACCCG
8120137 AATTACC
1 AATTACC
8120144 GAAAAATACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.37, C:0.30, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:8120768 original size:21 final size:20
Alignment explanation
Indices: 8120735--8120773 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8120725 AAATTGTTAT
8120735 TTAAAAAAATAAAAATTTTGA
1 TTAAAAAAAT-AAAATTTTGA
* *
8120756 TTAAAATATTAAAATTTT
1 TTAAAAAAATAAAATTTT
8120774 AAACATGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
TTAAAAAAATAAAATTTTGA
Found at i:8121389 original size:17 final size:17
Alignment explanation
Indices: 8121367--8121403 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8121357 AAATTAAATT
8121367 AAATTAAAATTTATATA
1 AAATTAAAATTTATATA
*
8121384 AAATTAAAATTTTTATA
1 AAATTAAAATTTATATA
8121401 AAA
1 AAA
8121404 AATTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTAAAATTTATATA
Found at i:8121400 original size:19 final size:17
Alignment explanation
Indices: 8121367--8121408 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
8121357 AAATTAAATT
*
8121367 AAATTAAAATTTATATA
1 AAATTAAAATTTATAAA
8121384 AAATTAAAATTTTTATAAA
1 AAATTAAAA--TTTATAAA
8121403 AAATTA
1 AAATTA
8121409 TATATTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
19 13 0.59
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTAAAATTTATAAA
Found at i:8127276 original size:17 final size:17
Alignment explanation
Indices: 8127256--8127301 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
8127246 CTAAAATACT
8127256 TAAAAATTCATAATAA-A
1 TAAAAATTCATAA-AATA
*
8127273 TAAAACTT--TAAAATA
1 TAAAAATTCATAAAATA
8127288 TAAAAATTCATAAA
1 TAAAAATTCATAAA
8127302 TACAACAGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 2 0.08
15 11 0.46
17 11 0.46
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAAATTCATAAAATA
Found at i:8131465 original size:22 final size:20
Alignment explanation
Indices: 8131425--8131466 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8131415 CTTCCTTCGT
*
8131425 AAAAACAATAATGAAAGAAG
1 AAAAACAATAAAGAAAGAAG
8131445 AAAAACAATCAAGAGAAAGAAG
1 AAAAACAAT-AA-AGAAAGAAG
8131467 TTACCATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.69, C:0.07, G:0.17, T:0.07
Consensus pattern (20 bp):
AAAAACAATAAAGAAAGAAG
Found at i:8134731 original size:130 final size:130
Alignment explanation
Indices: 8134498--8134764 Score: 534
Period size: 130 Copynumber: 2.1 Consensus size: 130
8134488 ACCAACATTA
8134498 TTATTTGTTATAATTTTGAATGTATAGCTAACCCGCGGGCCAAGGATGGTCTGTACCTAGATGCT
1 TTATTTGTTATAATTTTGAATGTATAGCTAACCCGCGGGCCAAGGATGGTCTGTACCTAGATGCT
8134563 GCTGCAAATGAACTCTATTTCTTTTACACATATATAGCTTGTATATATATAAGAATATTATGTAC
66 GCTGCAAATGAACTCTATTTCTTTTACACATATATAGCTTGTATATATATAAGAATATTATGTAC
8134628 TTATTTGTTATAATTTTGAATGTATAGCTAACCCGCGGGCCAAGGATGGTCTGTACCTAGATGCT
1 TTATTTGTTATAATTTTGAATGTATAGCTAACCCGCGGGCCAAGGATGGTCTGTACCTAGATGCT
8134693 GCTGCAAATGAACTCTATTTCTTTTACACATATATAGCTTGTATATATATAAGAATATTATGTAC
66 GCTGCAAATGAACTCTATTTCTTTTACACATATATAGCTTGTATATATATAAGAATATTATGTAC
8134758 TTATTTG
1 TTATTTG
8134765 GTAGAAAATG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 137 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (130 bp):
TTATTTGTTATAATTTTGAATGTATAGCTAACCCGCGGGCCAAGGATGGTCTGTACCTAGATGCT
GCTGCAAATGAACTCTATTTCTTTTACACATATATAGCTTGTATATATATAAGAATATTATGTAC
Found at i:8139478 original size:20 final size:20
Alignment explanation
Indices: 8139441--8139480 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8139431 TCCTAAATTG
* *
8139441 CTTATTTATAAGATTATTAT
1 CTTATTTATAAAACTATTAT
8139461 CTTATTTATAAAACTATTAT
1 CTTATTTATAAAACTATTAT
8139481 TTTAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (20 bp):
CTTATTTATAAAACTATTAT
Found at i:8139601 original size:16 final size:15
Alignment explanation
Indices: 8139588--8139617 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
8139578 GATTTTTATT
8139588 TTTTAAAGTTTTTAAA
1 TTTTAAA-TTTTTAAA
8139604 TTTTAAATTTTTAA
1 TTTTAAATTTTTAA
8139618 GAATTTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (15 bp):
TTTTAAATTTTTAAA
Found at i:8139819 original size:24 final size:25
Alignment explanation
Indices: 8139787--8139833 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
8139777 GGAAGAGTAA
8139787 TTAAAATATTAA-ATTTTAATAACG
1 TTAAAATATTAATATTTTAATAACG
* *
8139811 TTAACATATTAATATTTTTATAA
1 TTAAAATATTAATATTTTAATAA
8139834 TTTACTCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (25 bp):
TTAAAATATTAATATTTTAATAACG
Found at i:8149831 original size:20 final size:21
Alignment explanation
Indices: 8149808--8149861 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
8149798 CACTTAAGCT
*
8149808 TTAAAATTTTAAATT-AATTA
1 TTAAAAATTTAAATTAAATTA
* **
8149828 TTAAAAACTTATGTTAAATTA
1 TTAAAAATTTAAATTAAATTA
8149849 TTAAAAATTTAAA
1 TTAAAAATTTAAA
8149862 AATGGTAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TTAAAAATTTAAATTAAATTA
Found at i:8156571 original size:19 final size:21
Alignment explanation
Indices: 8156543--8156581 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8156533 CGTATCAAAT
*
8156543 AAATACCTTTTTA-TTAATTA
1 AAATACCTTTGTAGTTAATTA
8156563 AAATA-CTTTGTAGTTAATT
1 AAATACCTTTGTAGTTAATT
8156582 TGTTAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (21 bp):
AAATACCTTTGTAGTTAATTA
Found at i:8156919 original size:21 final size:21
Alignment explanation
Indices: 8156904--8156952 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
8156894 TTTATATTTT
8156904 AAAAAA-TATTAATTATTATA
1 AAAAAATTATTAATTATTATA
*
8156924 AAAAAATTATTAA-TATGATA
1 AAAAAATTATTAATTATTATA
8156944 AAAATAATT
1 AAAA-AATT
8156953 TCTAAACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAAATTATTAATTATTATA
Found at i:8156925 original size:19 final size:19
Alignment explanation
Indices: 8156897--8156947 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
8156887 TATATAATTT
*
8156897 ATATTTTAAAAAA-TATTA
1 ATATTATAAAAAATTATTA
8156915 ATTATTATAAAAAAATTATTA
1 A-TATTAT-AAAAAATTATTA
*
8156936 ATATGATAAAAA
1 ATATTATAAAAA
8156948 TAATTTCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 1 0.04
19 10 0.36
20 11 0.39
21 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
ATATTATAAAAAATTATTA
Found at i:8158230 original size:21 final size:22
Alignment explanation
Indices: 8158206--8158248 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8158196 AAAGTAATAA
8158206 ATTAAATATTA-TACTGTTATT
1 ATTAAATATTATTACTGTTATT
* *
8158227 ATTAATTATTATTGCTGTTATT
1 ATTAAATATTATTACTGTTATT
8158249 TGCTCATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTAAATATTATTACTGTTATT
Found at i:8158307 original size:8 final size:8
Alignment explanation
Indices: 8158296--8158347 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
8158286 ATGCATATAC
8158296 TTATATCT
1 TTATATCT
*
8158304 TTATATTT
1 TTATATCT
*
8158312 TTATATTT
1 TTATATCT
*
8158320 TTATA-AT
1 TTATATCT
8158327 TTATATCT
1 TTATATCT
*
8158335 ATATATCT
1 TTATATCT
8158343 TTATA
1 TTATA
8158348 CCTTCTTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
7 6 0.16
8 32 0.84
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (8 bp):
TTATATCT
Found at i:8158339 original size:23 final size:23
Alignment explanation
Indices: 8158303--8158347 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8158293 TACTTATATC
* * *
8158303 TTTATATTTTTATATTTTTATAA
1 TTTATATCTATATATCTTTATAA
8158326 TTTATATCTATATATCTTTATA
1 TTTATATCTATATATCTTTATA
8158348 CCTTCTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTATATCTATATATCTTTATAA
Found at i:8161908 original size:28 final size:29
Alignment explanation
Indices: 8161877--8161937 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
8161867 TAAAATTATC
8161877 AAAATCAG-TTCATTTCCGTAAATTTTTT
1 AAAATCAGATTCATTTCCGTAAATTTTTT
** * *
8161905 AAAATTTGATTTATTTCCGTAATTTTTTT
1 AAAATCAGATTCATTTCCGTAAATTTTTT
8161934 AAAA
1 AAAA
8161938 ATACTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (29 bp):
AAAATCAGATTCATTTCCGTAAATTTTTT
Found at i:8187545 original size:6 final size:7
Alignment explanation
Indices: 8187528--8187559 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8187518 TACAAAACTC
8187528 AAAAAGT
1 AAAAAGT
8187535 AAAAAGT
1 AAAAAGT
8187542 AAAAAGT
1 AAAAAGT
*
8187549 AAAAAAT
1 AAAAAGT
8187556 AAAA
1 AAAA
8187560 TGGATAGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.78, C:0.00, G:0.09, T:0.12
Consensus pattern (7 bp):
AAAAAGT
Found at i:8192174 original size:41 final size:41
Alignment explanation
Indices: 8192104--8192307 Score: 327
Period size: 41 Copynumber: 5.0 Consensus size: 41
8192094 GCATATTCGG
* * *
8192104 ATCATCGGTACTTAGCCTGCTAGGTTTATAACCTGATTAAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
* * *
8192145 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
8192186 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
* * *
8192227 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
8192268 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCA
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCA
8192308 ATTCACCAAT
Statistics
Matches: 149, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 149 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (41 bp):
ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
Found at i:8192207 original size:82 final size:82
Alignment explanation
Indices: 8192098--8192314 Score: 382
Period size: 82 Copynumber: 2.6 Consensus size: 82
8192088 AATTTAGCAT
* * *
8192098 ATTCGGATCATCGGTACTTAGCCTGCTAGGTTTATAACCTGATTAATATCACCGGCACTTAGCCT
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTAATATCACCGGCACTTAGCCT
8192163 GCTAGGCTTATAGCCTG
66 GCTAGGCTTATAGCCTG
*
8192180 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCATATCACCGGCACTTAGCCT
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTAATATCACCGGCACTTAGCCT
8192245 GCTAGGCTTATAGCCTG
66 GCTAGGCTTATAGCCTG
8192262 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAAT-TCACC
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATT-AATATCACC
8192315 AATTCCAAAC
Statistics
Matches: 129, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
82 127 0.98
83 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (82 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTAATATCACCGGCACTTAGCCT
GCTAGGCTTATAGCCTG
Found at i:8194546 original size:15 final size:15
Alignment explanation
Indices: 8194526--8194565 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
8194516 TCACCGATCC
*
8194526 ACCTCCACTGTCAAG
1 ACCTCCACCGTCAAG
8194541 ACCTCCACCGTCAAG
1 ACCTCCACCGTCAAG
8194556 ACCTCCACCG
1 ACCTCCACCG
8194566 ATCTACCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.25, C:0.47, G:0.12, T:0.15
Consensus pattern (15 bp):
ACCTCCACCGTCAAG
Found at i:8195176 original size:24 final size:24
Alignment explanation
Indices: 8195148--8195193 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
8195138 AAGATTAAAA
*
8195148 GTTGTGCATTATTACCCATAAAGT
1 GTTGTGCATTATTAACCATAAAGT
8195172 GTTGTGCATTATTAACCATAAA
1 GTTGTGCATTATTAACCATAAA
8195194 TTTAGGTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (24 bp):
GTTGTGCATTATTAACCATAAAGT
Found at i:8195389 original size:9 final size:9
Alignment explanation
Indices: 8195375--8195410 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
8195365 ATTTTGTTAC
8195375 TACAATTAA
1 TACAATTAA
8195384 TACAATT-A
1 TACAATTAA
8195392 -ACAATTAA
1 TACAATTAA
8195400 TACAATTAA
1 TACAATTAA
8195409 TA
1 TA
8195411 ATTTGATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 6 0.24
8 2 0.08
9 17 0.68
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
TACAATTAA
Found at i:8195397 original size:16 final size:16
Alignment explanation
Indices: 8195376--8195413 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
8195366 TTTTGTTACT
8195376 ACAATTAATACAATTA
1 ACAATTAATACAATTA
8195392 ACAATTAATACAATTA
1 ACAATTAATACAATTA
*
8195408 ATAATT
1 ACAATT
8195414 TGATAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (16 bp):
ACAATTAATACAATTA
Found at i:8195504 original size:16 final size:16
Alignment explanation
Indices: 8195483--8195524 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
8195473 AAAAATTTGA
*
8195483 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
8195499 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
8195515 TAGTTTTAAT
1 TAATTTTAAT
8195525 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:8196817 original size:5 final size:5
Alignment explanation
Indices: 8196807--8196878 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
8196797 GTTAAAAAAA
* *
8196807 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
8196853 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
8196879 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:8196860 original size:19 final size:19
Alignment explanation
Indices: 8196836--8196878 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
8196826 ATTATGTTTT
8196836 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
8196855 TATATTATATTATATTATA
1 TATATTATATTATATTATA
8196874 TATAT
1 TATAT
8196879 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:8196911 original size:18 final size:19
Alignment explanation
Indices: 8196883--8196922 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
8196873 ATATATACAT
*
8196883 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
8196902 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
8196920 AAA
1 AAA
8196923 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:8197978 original size:44 final size:45
Alignment explanation
Indices: 8197883--8198016 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
8197873 ACAGGACAGA
* * *
8197883 ACAGAAATGAGCCATATAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
8197929 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
8197973 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8198017 CAGGGTATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 36 0.49
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:8203057 original size:5 final size:5
Alignment explanation
Indices: 8203047--8203118 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
8203037 GTTAAAAAAA
* *
8203047 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
8203093 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
8203119 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:8203100 original size:19 final size:19
Alignment explanation
Indices: 8203076--8203118 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
8203066 ATTATGTTTT
8203076 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
8203095 TATATTATATTATATTATA
1 TATATTATATTATATTATA
8203114 TATAT
1 TATAT
8203119 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:8203151 original size:18 final size:19
Alignment explanation
Indices: 8203123--8203162 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
8203113 ATATATACAT
*
8203123 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
8203142 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
8203160 AAA
1 AAA
8203163 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:8203237 original size:12 final size:13
Alignment explanation
Indices: 8203222--8203250 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8203212 GAGAAGGAAG
8203222 GAAAGAAAG-AAA
1 GAAAGAAAGAAAA
8203234 GAAAGAAAGAAAA
1 GAAAGAAAGAAAA
8203247 GAAA
1 GAAA
8203251 AAGGGAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGAAAA
Found at i:8204181 original size:46 final size:44
Alignment explanation
Indices: 8204122--8204236 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
8204112 ACAGGACAGA
* *
8204122 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
8204168 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
8204212 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
8204237 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:8204217 original size:44 final size:45
Alignment explanation
Indices: 8204122--8204255 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
8204112 ACAGGACAGA
* *
8204122 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
8204168 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
8204212 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8204256 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:8206800 original size:20 final size:20
Alignment explanation
Indices: 8206753--8206800 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
8206743 AGTAAGCTCG
8206753 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
8206773 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
8206793 GTTGAGCT
1 GTTGAGCT
8206801 GGACGGTCTC
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:8209065 original size:13 final size:13
Alignment explanation
Indices: 8209047--8209075 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8209037 GCCCAAACTT
8209047 AATTACCCAACCC
1 AATTACCCAACCC
8209060 AATTACCCAACCC
1 AATTACCCAACCC
8209073 AAT
1 AAT
8209076 AAAACTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (13 bp):
AATTACCCAACCC
Found at i:8209228 original size:9 final size:9
Alignment explanation
Indices: 8209216--8209283 Score: 84
Period size: 9 Copynumber: 7.4 Consensus size: 9
8209206 AAATAAAAAA
8209216 AATTCGGGT
1 AATTCGGGT
8209225 AATTCGGGT
1 AATTCGGGT
*
8209234 ATTTTTC-GGT
1 A--ATTCGGGT
*
8209244 AATTCGGTT
1 AATTCGGGT
*
8209253 AATTCGGTT
1 AATTCGGGT
8209262 AATTCGGGT
1 AATTCGGGT
8209271 AATTCGGGT
1 AATTCGGGT
8209280 AATT
1 AATT
8209284 TTTAACCAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.06
9 42 0.81
10 4 0.08
11 3 0.06
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.41
Consensus pattern (9 bp):
AATTCGGGT
Found at i:8213047 original size:19 final size:19
Alignment explanation
Indices: 8213009--8213047 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8212999 AATTTTTTGT
* *
8213009 AAAAAAATATTAGAATTTA
1 AAAAAAATATTAAAAATTA
8213028 AAAAAAATATTAAAAATTA
1 AAAAAAATATTAAAAATTA
8213047 A
1 A
8213048 TTAATTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (19 bp):
AAAAAAATATTAAAAATTA
Found at i:8219272 original size:218 final size:218
Alignment explanation
Indices: 8218894--8219332 Score: 842
Period size: 218 Copynumber: 2.0 Consensus size: 218
8218884 TTAGACCAGA
*
8218894 TTAACAAGTCAAGGGTTCAGGATTTAAGATTTCGGTTTAAAAATCAGTGTATGATACACAATGAT
1 TTAACAAGTCAAGAGTTCAGGATTTAAGATTTCGGTTTAAAAATCAGTGTATGATACACAATGAT
*
8218959 AATGCTATGTCGTATGCCTACCACCTGGAGTGGGACGCATTTTGGTCTTAATCTAACTTTATTGT
66 AATGCTATGTCGTATGCCTACCACCTGGAGTGGGACGCATTTTGGTCTTAATCTAACTTTATTGG
8219024 AGGTTTACCATGGTTGTGTGGCATGCTGCTTCCTGGTCTGGGCATATCTTTCAAAATTTTCAATT
131 AGGTTTACCATGGTTGTGTGGCATGCTGCTTCCTGGTCTGGGCATATCTTTCAAAATTTTCAATT
8219089 TGTTTTCTTATGAAATAATGTTC
196 TGTTTTCTTATGAAATAATGTTC
*
8219112 TTAACAAGTCAAGAGTTCAGGATTTAAGATTTGGGTTTAAAAATCAGTGTATGATACACAATGAT
1 TTAACAAGTCAAGAGTTCAGGATTTAAGATTTCGGTTTAAAAATCAGTGTATGATACACAATGAT
8219177 AATGCTATGTCGTATGCCTACCACCTGGAGTGGGACGCATTTTGGTCTTAATCTAACTTTATTGG
66 AATGCTATGTCGTATGCCTACCACCTGGAGTGGGACGCATTTTGGTCTTAATCTAACTTTATTGG
8219242 AGGTTTACCATGGTTGTGTGGCATGCTGCTTCCTGGTCTGGGCATATCTTTCAAAATTTTCAATT
131 AGGTTTACCATGGTTGTGTGGCATGCTGCTTCCTGGTCTGGGCATATCTTTCAAAATTTTCAATT
*
8219307 TGTTTTCTTATGGAATAATGTTC
196 TGTTTTCTTATGAAATAATGTTC
8219330 TTA
1 TTA
8219333 TTAAGTATTA
Statistics
Matches: 217, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 217 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (218 bp):
TTAACAAGTCAAGAGTTCAGGATTTAAGATTTCGGTTTAAAAATCAGTGTATGATACACAATGAT
AATGCTATGTCGTATGCCTACCACCTGGAGTGGGACGCATTTTGGTCTTAATCTAACTTTATTGG
AGGTTTACCATGGTTGTGTGGCATGCTGCTTCCTGGTCTGGGCATATCTTTCAAAATTTTCAATT
TGTTTTCTTATGAAATAATGTTC
Found at i:8226994 original size:33 final size:33
Alignment explanation
Indices: 8226946--8227010 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
8226936 ATAGGATTAC
8226946 CAGCCATTCTGTTAACATGTTCAAAGTAACTAT
1 CAGCCATTCTGTTAACATGTTCAAAGTAACTAT
* * *
8226979 CAGCCATTTCT-TTAACATTTTCCAGGTAACTA
1 CAGCCA-TTCTGTTAACATGTTCAAAGTAACTA
8227011 AAACTAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (33 bp):
CAGCCATTCTGTTAACATGTTCAAAGTAACTAT
Found at i:8230466 original size:26 final size:26
Alignment explanation
Indices: 8230414--8230466 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8230404 TTTTAAAAAT
* *
8230414 ACTTCTCAAAAACATTTTTCTACAGC
1 ACTTCTCAAAAACATTTTTCAAAAGC
*
8230440 ACTTCTCAAAAATATTTTTCAAAAGC
1 ACTTCTCAAAAACATTTTTCAAAAGC
8230466 A
1 A
8230467 ATTAAAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (26 bp):
ACTTCTCAAAAACATTTTTCAAAAGC
Found at i:8235340 original size:21 final size:23
Alignment explanation
Indices: 8235314--8235364 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
8235304 TAAGATATTG
*
8235314 AAAAAATAACA-AGAAAATA-TA
1 AAAAAATAACAGAAAAAATAGTA
8235335 AAAAAATAACAGTAAAAAATAGTA
1 AAAAAATAACAG-AAAAAATAGTA
8235359 AAAAAA
1 AAAAAA
8235365 ACATATTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.42
23 7 0.27
24 8 0.31
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.14
Consensus pattern (23 bp):
AAAAAATAACAGAAAAAATAGTA
Found at i:8235686 original size:22 final size:21
Alignment explanation
Indices: 8235635--8235687 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
8235625 TTCGACATCC
*
8235635 TTAAATT-ATAAATATTTTTT
1 TTAAATTGATAAATATTTATT
*
8235655 TTCAAATTGATATATAATTTATT
1 TT-AAATTGATAAAT-ATTTATT
8235678 TTAAATTGAT
1 TTAAATTGAT
8235688 TCATTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 5 0.18
22 13 0.46
23 8 0.29
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
TTAAATTGATAAATATTTATT
Found at i:8238890 original size:8 final size:8
Alignment explanation
Indices: 8238877--8238917 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
8238867 AGGAGAGGAC
8238877 TTTTTTGT
1 TTTTTTGT
8238885 TTTTTTGT
1 TTTTTTGT
8238893 TTTTTT-T
1 TTTTTTGT
8238900 TTTGTTT-T
1 TTT-TTTGT
*
8238908 TTTGTTGT
1 TTTTTTGT
8238916 TT
1 TT
8238918 ATAAAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (8 bp):
TTTTTTGT
Found at i:8238900 original size:11 final size:11
Alignment explanation
Indices: 8238884--8238917 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8238874 GACTTTTTTG
8238884 TTTTTTTGTTTT
1 TTTTTTTG-TTT
8238896 TTTTTTTGTTT
1 TTTTTTTGTTT
*
8238907 TTTTGTTGTTT
1 TTTTTTTGTTT
8238918 ATAAAAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:8238901 original size:12 final size:12
Alignment explanation
Indices: 8238879--8238910 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
8238869 GAGAGGACTT
8238879 TTTTGTTTTTTTG
1 TTTT-TTTTTTTG
8238892 TTTTTTTTTTTG
1 TTTTTTTTTTTG
8238904 TTTTTTT
1 TTTTTTT
8238911 GTTGTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:8239928 original size:15 final size:15
Alignment explanation
Indices: 8239908--8239941 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8239898 TTTATTTTTG
* *
8239908 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
8239923 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
8239938 TTAT
1 TTAT
8239942 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:8241942 original size:62 final size:62
Alignment explanation
Indices: 8241876--8241997 Score: 208
Period size: 62 Copynumber: 2.0 Consensus size: 62
8241866 CACGTATCTC
* *
8241876 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATCAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* *
8241938 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATCAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
8241998 TCGAGTTTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATCAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:8243246 original size:13 final size:12
Alignment explanation
Indices: 8243228--8243258 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
8243218 GTGGAGGCAA
8243228 AAAAAAAAGAGAC
1 AAAAAAAAG-GAC
8243241 AAAAAAAAGGAC
1 AAAAAAAAGGAC
8243253 AAAAAA
1 AAAAAA
8243259 GTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGGAC
Found at i:8243730 original size:12 final size:13
Alignment explanation
Indices: 8243720--8243769 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
8243710 TAAAAAAATG
*
8243720 AAAAGAAAAATGAA
1 AAAAGAAAAAAG-A
8243734 AAAATGAAAAAAG-
1 AAAA-GAAAAAAGA
8243747 AAAAGAAAAAAGA
1 AAAAGAAAAAAGA
8243760 AAAAGAAAAA
1 AAAAGAAAAA
8243770 GGAGAGGCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
12 8 0.24
13 14 0.42
14 4 0.12
15 7 0.21
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (13 bp):
AAAAGAAAAAAGA
Found at i:8243734 original size:7 final size:6
Alignment explanation
Indices: 8243720--8243770 Score: 50
Period size: 6 Copynumber: 7.8 Consensus size: 6
8243710 TAAAAAAATG
8243720 AAAAGA AAAATGAA AAAATGA AAAA-A GAAAAGAA AAAAGA AAAAGA AAAAG
1 AAAAGA AAAA-G-A AAAA-GA AAAAGA -AAAAG-A AAAAGA AAAAGA AAAAG
8243771 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
5 1 0.03
6 20 0.50
7 11 0.28
8 8 0.20
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:8243737 original size:20 final size:20
Alignment explanation
Indices: 8243712--8243769 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
8243702 ACTTCACTTA
*
8243712 AAAAAATGAAAAGAAAAATG
1 AAAAAATGAAAAGAAAAAAG
8243732 AAAAAATGAAAA-AAGAAAAG
1 AAAAAATGAAAAGAA-AAAAG
8243752 AAAAAA-GAAAAAGAAAAA
1 AAAAAATG-AAAAGAAAAA
8243770 GGAGAGGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 3 0.09
20 29 0.85
21 2 0.06
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAAATGAAAAGAAAAAAG
Found at i:8245136 original size:86 final size:86
Alignment explanation
Indices: 8244991--8245340 Score: 556
Period size: 86 Copynumber: 4.1 Consensus size: 86
8244981 AGTAAAAATT
* * * * * *
8244991 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
8245056 GCATTGACAGCGAAACAGATC
66 GCATTGACAGCGAAGCAGATC
*
8245077 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
8245142 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
8245163 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
8245228 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * *
8245249 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
8245314 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
8245336 GAAGA
1 GAAGA
8245341 TGGCAGATTT
Statistics
Matches: 247, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 226 0.91
87 21 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:8245178 original size:42 final size:42
Alignment explanation
Indices: 8245045--8245265 Score: 98
Period size: 42 Copynumber: 5.2 Consensus size: 42
8245035 GTTATCAGAT
*
8245045 CTTGCCTTCCTGCATTGACAGCGAAACAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
8245087 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
8245131 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
8245173 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
*
8245217 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
8245259 CTTGCCT
1 CTTGCCT
8245266 CTCTCGTTTG
Statistics
Matches: 121, Mismatches: 38, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
40 2 0.02
41 25 0.21
42 35 0.29
43 4 0.03
44 27 0.22
45 26 0.21
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:8245564 original size:136 final size:134
Alignment explanation
Indices: 8245288--8245582 Score: 502
Period size: 136 Copynumber: 2.2 Consensus size: 134
8245278 GCAGAGCTGG
*
8245288 TTGAAGATAT-CAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
8245352 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATCTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATCTGGCAGTGGA
8245417 ATAGA
130 ATAGA
8245422 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
* * * *
8245487 CCTCCCTGTGACTACAGTGGAGTAGATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
66 CCTCCC--TGACAACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATCTGGCAGTGG
8245552 AATAGA
129 AATAGA
*
8245558 TTGAAGATTGCAGATCTTGTCTTCC
1 TTGAAGATTGCAGATCTTGCCTTCC
8245583 CATATTGGTG
Statistics
Matches: 152, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
133 1 0.01
134 68 0.45
136 83 0.55
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATCTGGCAGTGGAA
TAGA
Found at i:8245715 original size:132 final size:133
Alignment explanation
Indices: 8245560--8245919 Score: 616
Period size: 132 Copynumber: 2.7 Consensus size: 133
8245550 GGAATAGATT
* *
8245560 GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGCAAATCTTGTCT
1 GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
8245625 TCATGTATTGGCGTGAAGTAGCTCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGG
66 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGG
8245690 ATC
131 ATC
8245693 GAAGA-TGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC-ACAGAAAGCAGATCTTGTC
1 GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGA-AGAAAGCAGATCTTGTC
* *
8245756 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAGGAAGTG
65 TTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTG
8245821 GATC
130 GATC
* *
8245825 GAAGATTGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCT
1 GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
8245890 TCATGTATTGGCGTGAAGTAGATCGAAGAT
66 TCATGTATTGGCGTGAAGTAGATCGAAGAT
8245920 TGAAGATCTT
Statistics
Matches: 215, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
132 124 0.58
133 90 0.42
134 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (133 bp):
GAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGG
ATC
Found at i:8245941 original size:44 final size:44
Alignment explanation
Indices: 8245554--8245972 Score: 324
Period size: 44 Copynumber: 9.4 Consensus size: 44
8245544 GGCAGTGGAA
* * * *
8245554 TAGATTGAAGATTGCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGCGAAG
* * * * * *
8245599 TAGATCGTAGAAAGCAAATCTTGTCTTCATGTATTGGCGTGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGCGAAG
* * * * *
8245643 TAGCTCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGCGAAG
* * *
8245687 TGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGCGAAG
* * * *
8245731 TAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
1 TAGATCGA-AGATAGCAGATCTTGTCTTCCTATATTGGCGCGAAG
* * * * **
8245775 TAGATCGAAGATAGTAGGTCCTATCTTCCTATATTGATAG-GAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTG-GCGCGAAG
* * * * *
8245819 TGGATCGAAGATTGCAGATCTTGTCTTCCCATACTGGTGGCGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGCGAAG
* * * * *
8245864 TAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGCGAAG
* * * * *
8245908 TAGATCGAAGATTGAAGATCTTGCCCTCCTGTATTTGGCAGCGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATA-TTGGC-GCGAAG
* * *
8245954 CAGATCAAAGATGGCAGAT
1 TAGATCGAAGATAGCAGAT
8245973 TTTACCTCCA
Statistics
Matches: 289, Mismatches: 75, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
43 24 0.08
44 154 0.53
45 91 0.31
46 20 0.07
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGCGAAG
Found at i:8246064 original size:136 final size:136
Alignment explanation
Indices: 8245893--8246595 Score: 1240
Period size: 136 Copynumber: 5.2 Consensus size: 136
8245883 CTTATCTTCA
* * *
8245893 TGTA-TTGGC-GT-GAAGTAGATCGAAGATTGAAGATCTTGCCCTCCTGTATTTGGCAGCGAAGC
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
8245955 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
65 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
8246020 ATCTCCC
130 ATCTCCC
8246027 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
8246092 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
66 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
8246157 TCTCCC
131 TCTCCC
8246163 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
8246228 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
66 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
8246293 TCTCCC
131 TCTCCC
*
8246299 TGTATTTGGCAGTGGAATAGATTTAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
*
8246364 GATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
66 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
8246427 TCTCCC
131 TCTCCC
* *
8246433 TGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* * *
8246498 GATCAAATATGGCAGATTTTACCTCC--CTGACAACAGTGGAGTACATTGAAGCCGATAACTCTA
66 GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
**
8246561 TCTCTT
131 TCTCCC
8246567 TGTATTTGGCAGTGGAATAGATTGAAGAT
1 TGTATTTGGCAGTGGAATAGATTGAAGAT
8246596 CAAGGATGGC
Statistics
Matches: 554, Mismatches: 12, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
134 202 0.36
135 5 0.01
136 344 0.62
137 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (136 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCC
Found at i:8246349 original size:46 final size:46
Alignment explanation
Indices: 8246025--8246490 Score: 212
Period size: 46 Copynumber: 10.3 Consensus size: 46
8246015 ACTCTATCTC
*
8246025 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * *
8246071 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACC-T
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * * ** * * * *
8246116 CCATGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTC
1 CC-TGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
*
8246161 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * *
8246207 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACC-T
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * * ** * * * *
8246252 CCATGTGA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTC
1 CC-TGT-ATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
* *
8246297 CCTGTATTTGGCAGTGGAATAGATTTAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
* * ** * * *
8246343 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTC
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTACCTT
* * * * ** * * * *
8246389 CCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTC
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TACCTT
* *
8246431 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
*
8246477 CCTGTATTTAGCAG
1 CCTGTATTTGGCAG
8246491 CGAAGCAGAT
Statistics
Matches: 291, Mismatches: 101, Indels: 56
0.65 0.23 0.12
Matches are distributed among these distances:
41 3 0.01
42 10 0.03
43 18 0.06
44 20 0.07
45 85 0.29
46 141 0.48
47 14 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (46 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTACCTT
Found at i:8246606 original size:229 final size:229
Alignment explanation
Indices: 8246363--8247121 Score: 1356
Period size: 229 Copynumber: 3.3 Consensus size: 229
8246353 GCAGCGAAGC
8246363 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
8246428 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCG
8246493 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACT
**
8246558 CTATCTCTTTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
8246592 AGATCAAGGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
8246657 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCG
8246722 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACT
8246787 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
8246821 AGATCAAGGATGGCAGATTTTACCTCCATGCGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCT--GACTACAGTGGAGTACATTGAAGCCGATAACTCT
* * * *
8246886 ATCTCCCTGTATTTGACAGTGGAATAGATTAAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAG
* *
8246951 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAA
129 CGAAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAA
8247016 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
194 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * **
8247052 AGATCAAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
8247117 CTCCC
66 CTCCC
8247122 GGGGCAAGAA
Statistics
Matches: 512, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
229 292 0.57
231 220 0.43
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTAGCAGCG
AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Done.