Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 204 of 208
Found at i:62853472 original size:16 final size:15
Alignment explanation
Indices: 62853439--62853480 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
62853429 AGAATTTTTG
62853439 TTTTTATAAATTTAA
1 TTTTTATAAATTTAA
62853454 TTTTT-TAAATCTTAGA
1 TTTTTATAAAT-TTA-A
62853470 TTTTTCATAAA
1 TTTTT-ATAAA
62853481 ATTATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.22
15 8 0.35
16 6 0.26
18 4 0.17
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (15 bp):
TTTTTATAAATTTAA
Found at i:62855726 original size:19 final size:18
Alignment explanation
Indices: 62855685--62855729 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
62855675 CGGGCTTAAT
* *
62855685 TTTTTTTTTTTGCCCAAA
1 TTTTTTTTTTGGCCCTAA
*
62855703 TTTTTTTTTTGGTCCTAA
1 TTTTTTTTTTGGCCCTAA
62855721 TGTTTTTTT
1 T-TTTTTTT
62855730 CCCAAACTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.69
Consensus pattern (18 bp):
TTTTTTTTTTGGCCCTAA
Found at i:62856669 original size:5 final size:5
Alignment explanation
Indices: 62856661--62856686 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
62856651 AATATAATTT
62856661 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
62856687 GTATTTCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:62860760 original size:78 final size:78
Alignment explanation
Indices: 62860631--62860787 Score: 296
Period size: 78 Copynumber: 2.0 Consensus size: 78
62860621 TTGCCAAGTC
*
62860631 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGATAGTTT
1 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
62860696 TAAATTCTGAGTT
66 TAAATTCTGAGTT
62860709 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
1 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
*
62860774 TAAATTCTGGGTT
66 TAAATTCTGAGTT
62860787 T
1 T
62860788 TTCTTTTTTG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.42
Consensus pattern (78 bp):
TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
TAAATTCTGAGTT
Found at i:62873944 original size:9 final size:10
Alignment explanation
Indices: 62873909--62873951 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
62873899 TTGAGGTTTT
62873909 TATATATTTA
1 TATATATTTA
* *
62873919 TTTTTATTTA
1 TATATATTTA
62873929 TATATATTTA
1 TATATATTTA
*
62873939 -ATATATTTT
1 TATATATTTA
62873948 TATA
1 TATA
62873952 ATAGAAAGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 8 0.30
10 19 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TATATATTTA
Found at i:62875849 original size:3 final size:3
Alignment explanation
Indices: 62875841--62875867 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
62875831 AAATTTGAGT
62875841 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
62875868 AGTACAACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:62877074 original size:18 final size:20
Alignment explanation
Indices: 62877051--62877089 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
62877041 TGTAAGGACT
62877051 CTTC-AAATAAATGAA-ATA
1 CTTCAAAATAAATGAACATA
*
62877069 CTTCAAAATAATTGAACATA
1 CTTCAAAATAAATGAACATA
62877089 C
1 C
62877090 ATGTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 10 0.56
20 4 0.22
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.28
Consensus pattern (20 bp):
CTTCAAAATAAATGAACATA
Found at i:62883016 original size:16 final size:16
Alignment explanation
Indices: 62882984--62883013 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
62882974 AATCCTGCAT
62882984 ATTTATTGAAAATTTA
1 ATTTATTGAAAATTTA
62883000 ATTTATT-AAAATTT
1 ATTTATTGAAAATTT
62883014 TAAATGAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
ATTTATTGAAAATTTA
Found at i:62892009 original size:78 final size:79
Alignment explanation
Indices: 62891866--62892014 Score: 169
Period size: 78 Copynumber: 1.9 Consensus size: 79
62891856 AAATAGGACC
* * * * *
62891866 ATTTTGCAAAATAAGGGAAATGTAAGAGTGGTTTTATAAGAAATTATCCTTATTTTCGAATTTAG
1 ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTATTTTCGAAATTAG
62891931 G-AGGGAAATGAGT
66 GTAGGGAAATGAGT
* ** * *
62891944 ATTTTGTAAAACAAGGGAAATGTGGGAGTGGCTTGAT-AGCAATT-TCCCTACTTTTTGAAAATT
1 ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTA-TTTTCG-AAATT
62892007 AGGTAGGG
64 AGGTAGGG
62892015 GTTTTCAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
76 5 0.09
77 11 0.19
78 38 0.66
79 4 0.07
ACGTcount: A:0.34, C:0.07, G:0.25, T:0.34
Consensus pattern (79 bp):
ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTATTTTCGAAATTAG
GTAGGGAAATGAGT
Found at i:62892785 original size:10 final size:10
Alignment explanation
Indices: 62892772--62892825 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
62892762 TTAAAATACT
62892772 TTTTTTAAAA
1 TTTTTTAAAA
62892782 TTTTTT---A
1 TTTTTTAAAA
62892789 -TTTTTAAAA
1 TTTTTTAAAA
*
62892798 TATTTTAAAA
1 TTTTTTAAAA
62892808 TACTTTTTAAAA
1 T--TTTTTAAAA
62892820 TTTTTT
1 TTTTTT
62892826 TTGGTGTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
6 5 0.14
7 1 0.03
9 1 0.03
10 20 0.56
12 9 0.25
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:62892793 original size:50 final size:49
Alignment explanation
Indices: 62892732--62892827 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 49
62892722 ATATTTATTT
* *
62892732 TTTTTTATTTTTTATATATTTAAAAATA-TTTTAAAATACTTTTTTTAAAA
1 TTTTTTATTTTTAAAATATTTAAAAATACTTTTAAAAT--TTTTTTTAAAA
*
62892782 TTTTTTATTTTTAAAATATTTTAAAATACTTTTTAAAATTTTTTTT
1 TTTTTTATTTTTAAAATATTTAAAAATAC-TTTTAAAATTTTTTTT
62892828 GGTGTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
50 32 0.78
52 9 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (49 bp):
TTTTTTATTTTTAAAATATTTAAAAATACTTTTAAAATTTTTTTTAAAA
Found at i:62892794 original size:16 final size:16
Alignment explanation
Indices: 62892760--62892804 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
62892750 TTTAAAAATA
*
62892760 TTTTAAAATA-CTT-T
1 TTTTAAAATATTTTAT
*
62892774 TTTTAAAATTTTTTAT
1 TTTTAAAATATTTTAT
62892790 TTTTAAAATATTTTA
1 TTTTAAAATATTTTA
62892805 AAATACTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 9 0.35
15 2 0.08
16 15 0.58
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAAATATTTTAT
Found at i:62892826 original size:40 final size:42
Alignment explanation
Indices: 62892738--62892827 Score: 125
Period size: 40 Copynumber: 2.2 Consensus size: 42
62892728 ATTTTTTTTT
*
62892738 ATTTTTTATATATTTAAAAATATTTTAAAATACTTTTTTTAAA
1 ATTTTTTTTATATTTAAAAATATTTTAAAATAC-TTTTTTAAA
*
62892781 A--TTTTTTAT-TTTTAAAATATTTTAAAATAC-TTTTTAAA
1 ATTTTTTTTATATTTAAAAATATTTTAAAATACTTTTTTAAA
62892819 ATTTTTTTT
1 ATTTTTTTT
62892828 GGTGTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
38 9 0.21
40 26 0.60
41 7 0.16
43 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (42 bp):
ATTTTTTTTATATTTAAAAATATTTTAAAATACTTTTTTAAA
Found at i:62904643 original size:25 final size:25
Alignment explanation
Indices: 62904607--62904667 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
62904597 GCTCGTGGAT
* *
62904607 AAGGTTCGCATGAATGTTCGCATTA
1 AAGGTTCACATGAATGTTCGCAATA
* *
62904632 AAGGTTTACATGACTGTTCGCAATA
1 AAGGTTCACATGAATGTTCGCAATA
*
62904657 AGGGTTCACAT
1 AAGGTTCACAT
62904668 AAGGGTTTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (25 bp):
AAGGTTCACATGAATGTTCGCAATA
Found at i:62904721 original size:25 final size:25
Alignment explanation
Indices: 62904687--62904735 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
62904677 CAATACAATA
*
62904687 TACATAAGGGTTCACATAACAGTTT
1 TACAAAAGGGTTCACATAACAGTTT
* *
62904712 TACAAAAGGGTTCACTTAATAGTT
1 TACAAAAGGGTTCACATAACAGTT
62904736 AAAAGGATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (25 bp):
TACAAAAGGGTTCACATAACAGTTT
Found at i:62906551 original size:29 final size:28
Alignment explanation
Indices: 62906519--62906634 Score: 74
Period size: 29 Copynumber: 3.9 Consensus size: 28
62906509 AATAATAAAT
62906519 TTAATATTAAATTAAATTTAATACTTATC
1 TTAATATTAAATTAAATTTAATA-TTATC
* ** **
62906548 TTAATAGTATTTTATTAATTTAATAAGA-C
1 TTAATATTAAATTA--AATTTAATATTATC
* *
62906577 TTAATATTAAATTTAATCTAATATTTATC
1 TTAATATTAAATTAAATTTAATA-TTATC
*
62906606 TTGATGATTATTATATT-AATTTAATATTA
1 TT-A--A-TATTAAATTAAATTTAATATTA
62906635 AAGTGATTAA
Statistics
Matches: 65, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
27 8 0.12
28 1 0.02
29 25 0.38
30 2 0.03
31 12 0.18
32 9 0.14
33 8 0.12
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.51
Consensus pattern (28 bp):
TTAATATTAAATTAAATTTAATATTATC
Found at i:62906605 original size:58 final size:58
Alignment explanation
Indices: 62906511--62906631 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 58
62906501 ATTCCAAAAA
* * *
62906511 TAATAAATTTAATATTAAATTAAATTTAATACTTATCTTAAT-AGTATTTTATTAATT
1 TAATAAACTTAATATTAAATTAAATCTAATACTTATCTTAATGAGTATTATATTAATT
* * * *
62906568 TAATAAGACTTAATATTAAATTTAATCTAATATTTATCTTGATGATTATTATATTAATT
1 TAATAA-ACTTAATATTAAATTAAATCTAATACTTATCTTAATGAGTATTATATTAATT
62906627 TAATA
1 TAATA
62906632 TTAAAGTGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 6 0.11
58 31 0.56
59 18 0.33
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (58 bp):
TAATAAACTTAATATTAAATTAAATCTAATACTTATCTTAATGAGTATTATATTAATT
Found at i:62907089 original size:23 final size:23
Alignment explanation
Indices: 62907063--62907203 Score: 138
Period size: 23 Copynumber: 6.1 Consensus size: 23
62907053 TTTTCCAACA
* *
62907063 GGGTTCGCATAAAATTTACTAAG
1 GGGTTCGCATAACATTCACTAAG
**
62907086 GGGTTCATATAACATTCACTAAG
1 GGGTTCGCATAACATTCACTAAG
** *
62907109 ATGTTCGCATAACATTCAATAAG
1 GGGTTCGCATAACATTCACTAAG
* * *
62907132 GGGTTCACACAACATTCACAAAG
1 GGGTTCGCATAACATTCACTAAG
* * * *
62907155 AGGTTTGCATAACGTTCATTAAG
1 GGGTTCGCATAACATTCACTAAG
* *
62907178 GGGTTTGCATAACATTCATTAAG
1 GGGTTCGCATAACATTCACTAAG
62907201 GGG
1 GGG
62907204 GTCATGCGGT
Statistics
Matches: 94, Mismatches: 24, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 94 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (23 bp):
GGGTTCGCATAACATTCACTAAG
Found at i:62907132 original size:46 final size:46
Alignment explanation
Indices: 62907064--62907200 Score: 157
Period size: 46 Copynumber: 3.0 Consensus size: 46
62907054 TTTCCAACAG
* * * *
62907064 GGTTCGCATAAAATTTACTAAGGGGTTCATATAACATTCACTAAGA
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
* * *
62907110 TGTTCGCATAACATTCAATAAGGGGTTCACACAACATTCACAAAGA
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
* * * ** *
62907156 GGTTTGCATAACGTTCATTAAGGGGTTTGCATAACATTCATTAAG
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAG
62907201 GGGGTCATGC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (46 bp):
GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
Found at i:62907712 original size:35 final size:35
Alignment explanation
Indices: 62907636--62907713 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
62907626 TTCTTCGGGA
* * *
62907636 CGACACCGTGACAACGATTTATAGGTTCCATAGAG
1 CGACACCGTGACAACGATCTACAGGCTCCATAGAG
* * *
62907671 CCACACCGTGACAACGGTCTACAGGCTCTAT-GAAG
1 CGACACCGTGACAACGATCTACAGGCTCCATAG-AG
62907706 CGACACCG
1 CGACACCG
62907714 CAATGGCGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.18
Consensus pattern (35 bp):
CGACACCGTGACAACGATCTACAGGCTCCATAGAG
Found at i:62907837 original size:27 final size:27
Alignment explanation
Indices: 62907807--62907896 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
62907797 AGTCCACTGG
* *
62907807 GACAATAAAAATGGGGTAGTCTGCCGA
1 GACAATAAAAATAGGGTAGTCCGCCGA
** *
62907834 GACAATAAAAATAGGGTAGTCCATCGG
1 GACAATAAAAATAGGGTAGTCCGCCGA
* *
62907861 GACAATAAACACAGGGTAGTCCGCCGA
1 GACAATAAAAATAGGGTAGTCCGCCGA
*
62907888 GATAATAAA
1 GACAATAAA
62907897 CATGAAGTAG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.17
Consensus pattern (27 bp):
GACAATAAAAATAGGGTAGTCCGCCGA
Found at i:62910254 original size:20 final size:20
Alignment explanation
Indices: 62910226--62910279 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
62910216 AAAATACCCT
*
62910226 AAACCCTAACCTTAAAATAA
1 AAACCCTAACCCTAAAATAA
*
62910246 AAACTCTAACCCTAAAAT--
1 AAACCCTAACCCTAAAATAA
*
62910264 AAGCCCTAACCCTAAA
1 AAACCCTAACCCTAAA
62910280 GAAAAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.47
20 16 0.53
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.19
Consensus pattern (20 bp):
AAACCCTAACCCTAAAATAA
Found at i:62911611 original size:16 final size:17
Alignment explanation
Indices: 62911587--62911619 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62911577 GCATTTGGGT
62911587 GGGGAGGGGTGG-GGGG
1 GGGGAGGGGTGGAGGGG
*
62911603 GGGGTGGGGTGGAGGGG
1 GGGGAGGGGTGGAGGGG
62911620 AGGTTGAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.06, C:0.00, G:0.85, T:0.09
Consensus pattern (17 bp):
GGGGAGGGGTGGAGGGG
Found at i:62920519 original size:20 final size:19
Alignment explanation
Indices: 62920496--62920548 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 19
62920486 AATAGAAAAT
*
62920496 AATTCCAAATATTTTTCAAA
1 AATTCCAAATATTTAT-AAA
** *
62920516 AATTTAAAATATTTATATA
1 AATTCCAAATATTTATAAA
62920535 AATTCCAAA-ATTTA
1 AATTCCAAATATTTA
62920549 GAAATTTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
18 5 0.19
19 9 0.33
20 13 0.48
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (19 bp):
AATTCCAAATATTTATAAA
Found at i:62923560 original size:32 final size:32
Alignment explanation
Indices: 62923524--62923584 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
62923514 TTCTGCTTGC
62923524 TTAAAGATGATAACCCCTCACTACAAATCTCA
1 TTAAAGATGATAACCCCTCACTACAAATCTCA
62923556 TTAAAGATGATAACCCCTCACTACAAATC
1 TTAAAGATGATAACCCCTCACTACAAATC
62923585 AGAAAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.41, C:0.28, G:0.07, T:0.25
Consensus pattern (32 bp):
TTAAAGATGATAACCCCTCACTACAAATCTCA
Found at i:62935681 original size:72 final size:73
Alignment explanation
Indices: 62935565--62935699 Score: 157
Period size: 72 Copynumber: 1.9 Consensus size: 73
62935555 TTACAATTAC
** * *
62935565 TCACCTTCTCACCTTCCCCTTGTCTCCAAATACCTGCATATTCTTTTAGCATCTTC-CCCCTTTC
1 TCACCTTCTCACCTTCCCCTTACCTCCAAATACCTGCATATTCTTCTAGCATCTCCTCCCCTTTC
62935629 CTTTAAAT
66 CTTTAAAT
* * * * * *
62935637 TCACCTTCTCAGCTTCCTC-TACCTCCAAAATACCTTCCTGTTCTTCTGGCATCTCCTCCCCTT
1 TCACCTTCTCACCTTCCCCTTACCTCC-AAATACCTGCATATTCTTCTAGCATCTCCTCCCCTT
62935700 CTTTTAATTT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
71 5 0.10
72 40 0.78
73 6 0.12
ACGTcount: A:0.16, C:0.40, G:0.05, T:0.39
Consensus pattern (73 bp):
TCACCTTCTCACCTTCCCCTTACCTCCAAATACCTGCATATTCTTCTAGCATCTCCTCCCCTTTC
CTTTAAAT
Found at i:62943245 original size:2 final size:2
Alignment explanation
Indices: 62943234--62943263 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
62943224 CTCATACATA
62943234 AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
62943264 AAATATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62948563 original size:10 final size:10
Alignment explanation
Indices: 62948548--62948581 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
62948538 AGAAAACCAC
62948548 AAAAATATGG
1 AAAAATATGG
62948558 AAAAATATGG
1 AAAAATATGG
62948568 AAAAATATGG
1 AAAAATATGG
62948578 AAAA
1 AAAA
62948582 CCACAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (10 bp):
AAAAATATGG
Found at i:62949725 original size:32 final size:32
Alignment explanation
Indices: 62949681--62949743 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
62949671 GTAGACTCGC
* *
62949681 GGTGGCTCGGAGACCAAGGGTCTGAAGCAAGT
1 GGTGGCTCGGAGACCAAAGGTCTCAAGCAAGT
62949713 GGTGGC-CAGGAGACCAAAGGTCTCAAGCAAG
1 GGTGGCTC-GGAGACCAAAGGTCTCAAGCAAG
62949744 GTGCGACGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.29, C:0.21, G:0.38, T:0.13
Consensus pattern (32 bp):
GGTGGCTCGGAGACCAAAGGTCTCAAGCAAGT
Found at i:62952531 original size:64 final size:64
Alignment explanation
Indices: 62952430--62952549 Score: 240
Period size: 64 Copynumber: 1.9 Consensus size: 64
62952420 TAGTTATTTT
62952430 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
62952494 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
62952550 AAATGTTACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (64 bp):
TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
Found at i:62959249 original size:32 final size:32
Alignment explanation
Indices: 62959205--62959267 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
62959195 GTAGACTCGC
*
62959205 GGTGGCTCGGAGACCAAGGGTCTGAAGCAAGT
1 GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
62959237 GGTGGC-CAGGAGACCAAAGGTCTGAAGCAAG
1 GGTGGCTC-GGAGACCAAAGGTCTGAAGCAAG
62959268 GTGCGACGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.29, C:0.19, G:0.40, T:0.13
Consensus pattern (32 bp):
GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
Found at i:62962059 original size:64 final size:64
Alignment explanation
Indices: 62961958--62962077 Score: 240
Period size: 64 Copynumber: 1.9 Consensus size: 64
62961948 TAGTTATTTT
62961958 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
62962022 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
62962078 AAATGTTACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (64 bp):
TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
Found at i:62967591 original size:2 final size:2
Alignment explanation
Indices: 62967551--62967576 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
62967541 TACATGTAAA
62967551 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
62967577 GAATGTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62968772 original size:32 final size:32
Alignment explanation
Indices: 62968728--62968790 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
62968718 GTAGACTCGC
*
62968728 GGTGGCTCGGAGACCAAGGGTCTGAAGCAAGT
1 GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
62968760 GGTGGC-CAGGAGACCAAAGGTCTGAAGCAAG
1 GGTGGCTC-GGAGACCAAAGGTCTGAAGCAAG
62968791 GTGCGACGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.29, C:0.19, G:0.40, T:0.13
Consensus pattern (32 bp):
GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
Found at i:62971580 original size:64 final size:64
Alignment explanation
Indices: 62971479--62971598 Score: 240
Period size: 64 Copynumber: 1.9 Consensus size: 64
62971469 TAGTTATTTT
62971479 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
62971543 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
62971599 AAATGTTACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (64 bp):
TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATATATATA
Found at i:62978494 original size:153 final size:155
Alignment explanation
Indices: 62978287--62978595 Score: 496
Period size: 153 Copynumber: 2.0 Consensus size: 155
62978277 GTGATTCTTG
62978287 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
1 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
* * * *
62978352 TAAAAAGTTTAATAAACTCGAATTC-A-AATTCCATCCAATGGGATAACATAGATTAGTGTTTTG
66 TAAAAAGTTAAATAAACTCGAATTCAACAATTCAATCAAATGGGATAACATAGATTACTGTTTTG
62978415 GTACCTAAAACTGATATAAAACCAA
131 GTACCTAAAACTGATATAAAACCAA
* **
62978440 TCCTCATATGCACATTTTGCATATAAACATGGTACAAATCTTTTGAATATATAAAAAATAAGTTT
1 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
*
62978505 TAAAAAGTTAAATAAACTCGAATTCAGATCCAATTCAATCAAATGGGATAACATAGGTTACTGTT
66 TAAAAAGTTAAATAAACTCGAATTCA-A--CAATTCAATCAAATGGGATAACATAGATTACTGTT
*
62978570 TTGGTACCTAAAATTGATATAAAACC
128 TTGGTACCTAAAACTGATATAAAACC
62978596 GACGAAGAAA
Statistics
Matches: 142, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
153 86 0.61
155 1 0.01
158 55 0.39
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (155 bp):
TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
TAAAAAGTTAAATAAACTCGAATTCAACAATTCAATCAAATGGGATAACATAGATTACTGTTTTG
GTACCTAAAACTGATATAAAACCAA
Found at i:62979632 original size:19 final size:20
Alignment explanation
Indices: 62979592--62979633 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
62979582 ATACGTCAAC
*
62979592 AAATAATTCAAAAATTATAA
1 AAATAATTCAAAAAATATAA
*
62979612 AAAT-ATTCAAACAA-ATAA
1 AAATAATTCAAAAAATATAA
62979630 AAAT
1 AAAT
62979634 TTTAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 8 0.40
20 4 0.20
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAATTCAAAAAATATAA
Found at i:62981087 original size:20 final size:21
Alignment explanation
Indices: 62981064--62981106 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
62981054 TAAATAATTT
62981064 AAATTA-TTAAAAAATTATAA
1 AAATTATTTAAAAAATTATAA
*
62981084 AAATTATTTAAAAAGTTATAA
1 AAATTATTTAAAAAATTATAA
62981105 AA
1 AA
62981107 TCAGTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
AAATTATTTAAAAAATTATAA
Found at i:62981965 original size:14 final size:14
Alignment explanation
Indices: 62981946--62981974 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62981936 GATTTTGATC
62981946 TAAAATAATTCAAA
1 TAAAATAATTCAAA
62981960 TAAAATAATTCAAA
1 TAAAATAATTCAAA
62981974 T
1 T
62981975 TTAATCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAATAATTCAAA
Found at i:62983404 original size:24 final size:25
Alignment explanation
Indices: 62983363--62983409 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
62983353 ATTAGTGATT
62983363 TGTAAAAATTGAATC-AAATTAACA
1 TGTAAAAATTGAATCAAAATTAACA
*
62983387 TGTATAAAATTGCA-CAAAATTAA
1 TGTA-AAAATTGAATCAAAATTAA
62983410 AATTCAGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.30
Consensus pattern (25 bp):
TGTAAAAATTGAATCAAAATTAACA
Found at i:62984503 original size:9 final size:9
Alignment explanation
Indices: 62984489--62984553 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
62984479 TAACAATTAT
62984489 TTTTAAAAA
1 TTTTAAAAA
62984498 TTTT-AAAA
1 TTTTAAAAA
62984506 TTTTGAAAAA
1 TTTT-AAAAA
*
62984516 -TAT-AAAA
1 TTTTAAAAA
*
62984523 TCATTTACAAA
1 T--TTTAAAAA
62984534 TTTTAAAAA
1 TTTTAAAAA
62984543 TTATTAAAAA
1 TT-TTAAAAA
62984553 T
1 T
62984554 ATAAAAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
7 4 0.09
8 8 0.18
9 15 0.33
10 14 0.31
11 4 0.09
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:62984552 original size:37 final size:36
Alignment explanation
Indices: 62984490--62984559 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
62984480 AACAATTATT
62984490 TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
1 TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
*
62984526 TTTACAAATTTTAAAAATTATT-AAAAATATAAAA
1 TTTAAAAATTTT-AAAATT-TTGAAAAATATAAAA
62984560 AATATTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
36 11 0.35
37 18 0.58
38 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (36 bp):
TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
Found at i:62987344 original size:30 final size:29
Alignment explanation
Indices: 62987299--62987360 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
62987289 TTGGAGTTAA
*
62987299 TAAGAGTACTCTTGATATTTCAACACATAT
1 TAAGAGTACTCTTGATATTCCAA-ACATAT
* * *
62987329 TAAGGGTATTCTTGATATTCCAAATATAT
1 TAAGAGTACTCTTGATATTCCAAACATAT
62987358 TAA
1 TAA
62987361 TTAAATTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (29 bp):
TAAGAGTACTCTTGATATTCCAAACATAT
Found at i:62987506 original size:72 final size:72
Alignment explanation
Indices: 62987428--62987647 Score: 232
Period size: 72 Copynumber: 3.0 Consensus size: 72
62987418 ATTAATATTT
* *
62987428 TTTTATTTTTAAGTAAATGATTTTCATTTATATGAAATTAATTGTTTTTAATTTTTGAGAGTTAC
1 TTTTATTTTTAAGTAAAT-ATTTTTATTTATATCAAATTAATTGTTTTTAATTTTTGAGAGTTAC
*
62987493 ATTTTTG-
65 ATTTTAGA
* *
62987500 TTTTATTATTAACTAAATTATTTTTATTTATATCAAATT-ATT-TTTATTAATTTTTGAGAGTTA
1 TTTTATTTTTAAGTAAA-TATTTTTATTTATATCAAATTAATTGTTT-TTAATTTTTGAGAGTTA
* *
62987563 CCTTCTAGAAA
64 CATTTTAG--A
** *
62987574 TTTT-TTTAAAAAAGTTACAATATTTTTATTTATATCAAATTAATTGTTTTTAATTATTTTAGAG
1 TTTTATTT--TTAAG-TA-AATATTTTTATTTATATCAAATTAATTGTTTTTAATT-TTTGAGAG
62987638 TTACATTTTA
61 TTACATTTTA
62987648 ATGTCACTCT
Statistics
Matches: 122, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
70 3 0.02
71 25 0.20
72 33 0.27
73 3 0.02
74 4 0.03
75 2 0.02
76 23 0.19
77 11 0.09
78 18 0.15
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (72 bp):
TTTTATTTTTAAGTAAATATTTTTATTTATATCAAATTAATTGTTTTTAATTTTTGAGAGTTACA
TTTTAGA
Found at i:62987525 original size:21 final size:21
Alignment explanation
Indices: 62987500--62987548 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
62987490 TACATTTTTG
62987500 TTTTATTAT-TAACTAAATTAT
1 TTTTATTATATAAC-AAATTAT
*
62987521 TTTTATT-TATATCAAATTAT
1 TTTTATTATATAACAAATTAT
62987541 TTTTATTA
1 TTTTATTA
62987549 ATTTTTGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATTATATAACAAATTAT
Found at i:62990496 original size:15 final size:15
Alignment explanation
Indices: 62990476--62990509 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
62990466 CAATTCTCGG
62990476 TTTACTAACCCAATT
1 TTTACTAACCCAATT
*
62990491 TTTACTAACTCAATT
1 TTTACTAACCCAATT
62990506 TTTA
1 TTTA
62990510 AGATGTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTACTAACCCAATT
Found at i:63023908 original size:138 final size:137
Alignment explanation
Indices: 63023576--63023855 Score: 497
Period size: 138 Copynumber: 2.0 Consensus size: 137
63023566 CCTAAGTTCC
*
63023576 GTAATTTTGAAGGAGTATAAAACACAATAAAAGAATATAAAAAATTATGGAAAAATACTAAAAAT
1 GTAATTTTGAAGCAGTAT-AAACACAATAAAAGAATATAAAAAATTATGGAAAAATACTAAAAAT
63023641 TATTTTTTTTAAAAACCAAAAATTATGAAACAATTTATTTTTATGAATTATTATTTTATATACAG
65 TATTTTTTTTAAAAACCAAAAATTATGAAACAATTTATTTTTATGAATTATTATTTTATATACAG
**
63023706 TCAGTTCC
130 TCAGTTAA
*
63023714 GTAATTTTGAAGGAGTATAAAACACAATAAAAGAATATAAAAAATTATGGAAAAATACTAAAAAT
1 GTAATTTTGAAGCAGTAT-AAACACAATAAAAGAATATAAAAAATTATGGAAAAATACTAAAAAT
63023779 TATTTTTTTTAAAAAACCAAAAATTATGAAACAATTTATTTTTATGAATTATTATTTTATATACA
65 TATTTTTTTT-AAAAACCAAAAATTATGAAACAATTTATTTTTATGAATTATTATTTTATATACA
63023844 GTCAGTTAA
129 GTCAGTTAA
63023853 GTA
1 GTA
63023856 CAATTTATAT
Statistics
Matches: 139, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
138 75 0.54
139 64 0.46
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (137 bp):
GTAATTTTGAAGCAGTATAAACACAATAAAAGAATATAAAAAATTATGGAAAAATACTAAAAATT
ATTTTTTTTAAAAACCAAAAATTATGAAACAATTTATTTTTATGAATTATTATTTTATATACAGT
CAGTTAA
Found at i:63028194 original size:72 final size:72
Alignment explanation
Indices: 63028104--63028246 Score: 205
Period size: 72 Copynumber: 2.0 Consensus size: 72
63028094 TGCGAGCCTA
* * ** *
63028104 TTGAAGACACCAACTGAAGACAGTAAGCCAAAGTGCGAGCCTGTCAAAGGTGTATGGTTGCAAGC
1 TTGAAGACACCAACTGAAGACAATAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
63028169 AGCAAAG
66 AGCAAAG
*** *
63028176 TTGAAGACACCTGTTGAAGACAATAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCGAGC
1 TTGAAGACACCAACTGAAGACAATAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
63028241 AGCAAA
66 AGCAAA
63028247 ATGCAAGCCC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.17
Consensus pattern (72 bp):
TTGAAGACACCAACTGAAGACAATAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
AGCAAAG
Found at i:63030805 original size:73 final size:73
Alignment explanation
Indices: 63030713--63030898 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
63030703 ACAACTTGAC
63030713 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
63030778 CACTAACA
66 CACTAACA
* *
63030786 AACTTAGTTGGATTCCAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
63030851 CACTAACA
66 CACTAACA
*
63030859 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
63030899 AATAATAATA
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:63030907 original size:3 final size:3
Alignment explanation
Indices: 63030899--63030945 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
63030889 ATTACATCCA
63030899 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63030946 AACATGTGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:63035254 original size:73 final size:73
Alignment explanation
Indices: 63035162--63035347 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
63035152 ACAACTTGAC
63035162 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
63035227 CACTAACA
66 CACTAACA
* *
63035235 AACTTAGTTGGATTCCAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
63035300 CACTAACA
66 CACTAACA
*
63035308 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
63035348 AATAATAATA
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:63035356 original size:3 final size:3
Alignment explanation
Indices: 63035348--63035376 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63035338 ATTACATCCA
63035348 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63035377 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63042629 original size:51 final size:50
Alignment explanation
Indices: 63042549--63042648 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
63042539 AGGACTAGGC
** * *
63042549 TGCACAAGTAGAATTTATATAGAACTACTCTTTTTTCTATTTGACATTGAT
1 TGCACAAGTAGAATCAATATAGAAATACTCTTCTTT-TATTTGACATTGAT
63042600 TGCACAAGTAGAATCAATATAGAAATACTCTTCTTTTATTTGACATTGA
1 TGCACAAGTAGAATCAATATAGAAATACTCTTCTTTTATTTGACATTGA
63042649 CTACAATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 13 0.29
51 32 0.71
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (50 bp):
TGCACAAGTAGAATCAATATAGAAATACTCTTCTTTTATTTGACATTGAT
Found at i:63049480 original size:30 final size:28
Alignment explanation
Indices: 63049446--63049503 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 28
63049436 TTCTTTTCGC
63049446 TAAATTTAACTC-TCAACCTTTCGTAAAAAT
1 TAAATTTAAC-CATCAACCTTT--TAAAAAT
*
63049476 TAAATTTGACCATCAACCTTTTAAAAAT
1 TAAATTTAACCATCAACCTTTTAAAAAT
63049504 AGTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 1 0.04
30 18 0.69
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.36
Consensus pattern (28 bp):
TAAATTTAACCATCAACCTTTTAAAAAT
Found at i:63051332 original size:3 final size:3
Alignment explanation
Indices: 63051289--63051313 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63051279 CCCCTTTTCT
63051289 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
63051314 CTCAACCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:63052398 original size:23 final size:23
Alignment explanation
Indices: 63052372--63052432 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
63052362 ACATCATTTA
63052372 TGCCACGTGTCATAATCTTATTC
1 TGCCACGTGTCATAATCTTATTC
*
63052395 TGCCATGTGTCATAATCTTATTC
1 TGCCACGTGTCATAATCTTATTC
63052418 TGCCATC-TGTCATAA
1 TGCCA-CGTGTCATAA
63052433 ATTTAACAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (23 bp):
TGCCACGTGTCATAATCTTATTC
Found at i:63053657 original size:18 final size:17
Alignment explanation
Indices: 63053636--63053672 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
63053626 TTTAGGATGA
*
63053636 TTTTATTTTAATATTTAT
1 TTTTATTTAAATA-TTAT
63053654 TTTTATTTAAATATTAT
1 TTTTATTTAAATATTAT
63053671 TT
1 TT
63053673 GTAAAGATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTATTTAAATATTAT
Found at i:63053662 original size:17 final size:18
Alignment explanation
Indices: 63053636--63053672 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
63053626 TTTAGGATGA
63053636 TTTTATTTT-AATATTTAT
1 TTTTATTTTAAATA-TTAT
63053654 TTTTA-TTTAAATATTAT
1 TTTTATTTTAAATATTAT
63053671 TT
1 TT
63053673 GTAAAGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTATTTTAAATATTAT
Found at i:63055712 original size:20 final size:20
Alignment explanation
Indices: 63055689--63055726 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63055679 CATATCTGGG
* *
63055689 ATTTTTATTTCTTTTTTTAA
1 ATTTTTAGTTATTTTTTTAA
63055709 ATTTTTAGTTATTTTTTT
1 ATTTTTAGTTATTTTTTT
63055727 CTTTCTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (20 bp):
ATTTTTAGTTATTTTTTTAA
Found at i:63055732 original size:32 final size:33
Alignment explanation
Indices: 63055690--63055765 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 33
63055680 ATATCTGGGA
*
63055690 TTTTTATTTC-TTTTTTT-AAATTTTTAGTTATT
1 TTTTTCTTTCTTTTTTTTAAAATTTTTAGTT-TT
63055722 TTTTTCTTTCTTTTTTTTAAAATTTTTAGTTTT
1 TTTTTCTTTCTTTTTTTTAAAATTTTTAGTTTT
63055755 TTTTCTCTTTC
1 TTTT-TCTTTC
63055766 CCAAAAACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
32 9 0.22
33 13 0.32
34 18 0.45
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (33 bp):
TTTTTCTTTCTTTTTTTTAAAATTTTTAGTTTT
Found at i:63062344 original size:24 final size:24
Alignment explanation
Indices: 63062315--63062366 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
63062305 TGAGAAGAAA
* *
63062315 AAGATACAGGCATACTCGGTGAAG
1 AAGATACAGGCAGACTAGGTGAAG
*
63062339 AAGATATAGGCAGACTAGGTGAAG
1 AAGATACAGGCAGACTAGGTGAAG
63062363 AAGA
1 AAGA
63062367 AGGAATAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.31, T:0.15
Consensus pattern (24 bp):
AAGATACAGGCAGACTAGGTGAAG
Found at i:63072581 original size:5 final size:5
Alignment explanation
Indices: 63072565--63072595 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
63072555 GAAAGGACCA
63072565 TATAT ATATAT TATAT TATAT TATAT TATAT
1 TATAT -TATAT TATAT TATAT TATAT TATAT
63072596 ATTATTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:63076346 original size:9 final size:9
Alignment explanation
Indices: 63076332--63076359 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
63076322 TATAGTTTGA
63076332 TATTCGAAT
1 TATTCGAAT
63076341 TATTCGAAT
1 TATTCGAAT
63076350 TATTCGAAT
1 TATTCGAAT
63076359 T
1 T
63076360 CGAAAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:63080542 original size:25 final size:24
Alignment explanation
Indices: 63080503--63080557 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
63080493 GGTTAATCGC
63080503 GTTTATTCTATTTTCATTTTTACTTT
1 GTTT-TTCTATTTTCATTTTTA-TTT
* * *
63080529 TTTTTTCTCTTTTCTTTTTTATTT
1 GTTTTTCTATTTTCATTTTTATTT
63080553 GTTTT
1 GTTTT
63080558 GTGAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 7 0.28
25 15 0.60
26 3 0.12
ACGTcount: A:0.09, C:0.11, G:0.04, T:0.76
Consensus pattern (24 bp):
GTTTTTCTATTTTCATTTTTATTT
Found at i:63081079 original size:10 final size:10
Alignment explanation
Indices: 63081064--63081090 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
63081054 ATTATTACTA
63081064 TATTATTTAT
1 TATTATTTAT
63081074 TATTATTTAT
1 TATTATTTAT
63081084 TATTATT
1 TATTATT
63081091 CCTATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTATTTAT
Found at i:63081170 original size:27 final size:27
Alignment explanation
Indices: 63081113--63081170 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
63081103 CACGCATTTT
* ***
63081113 CTTTATATAGTATATATATACATATTT
1 CTTTATATAATATATATATACATAAAC
* *
63081140 CTTTATATAATATATATATTCTTAAAC
1 CTTTATATAATATATATATACATAAAC
63081167 CTTT
1 CTTT
63081171 TTAAATACAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (27 bp):
CTTTATATAATATATATATACATAAAC
Found at i:63082960 original size:16 final size:16
Alignment explanation
Indices: 63082939--63082969 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63082929 GTTTCACTTT
63082939 GACTGCATAGCATTTA
1 GACTGCATAGCATTTA
*
63082955 GACTGCATGGCATTT
1 GACTGCATAGCATTT
63082970 CATTATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (16 bp):
GACTGCATAGCATTTA
Found at i:63085360 original size:20 final size:21
Alignment explanation
Indices: 63085324--63085365 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
63085314 GCAAATGTTC
*
63085324 TTTCATTCTTTACGATT-TTT
1 TTTCATTCTTCACGATTCTTT
63085344 TTTCATTCCTTCA-GATTCTTT
1 TTTCATT-CTTCACGATTCTTT
63085365 T
1 T
63085366 CTGCCAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.14, C:0.19, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTCATTCTTCACGATTCTTT
Found at i:63087786 original size:92 final size:90
Alignment explanation
Indices: 63087608--63087853 Score: 388
Period size: 92 Copynumber: 2.7 Consensus size: 90
63087598 CAGGTTGAAA
* * * *
63087608 AGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAG-AAAGTAGATCTTGTCTT
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
63087672 CATGTACTGGCGTGAAGTAGATCAG
66 CATGTACTGGCGTGAAGTAGATCAG
* *
63087697 AGATAACAGATCTTGCCTTCCCATACTGGTGGAGAAGCAGATCGAAGGAAAAAGCAGATCTTGTC
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G-AAAAGTAGATCTTGTC
63087762 TTCATGTACTGGCGTGAAGTAGATCAG
64 TTCATGTACTGGCGTGAAGTAGATCAG
* *
63087789 AGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAAATCGAAG-AAAGTAGATCTTGTCTT
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
63087853 C
66 C
63087854 CCATATTGAT
Statistics
Matches: 144, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
89 58 0.40
90 1 0.01
91 1 0.01
92 84 0.58
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (90 bp):
AGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
CATGTACTGGCGTGAAGTAGATCAG
Found at i:63087971 original size:89 final size:89
Alignment explanation
Indices: 63087841--63088885 Score: 1516
Period size: 89 Copynumber: 11.7 Consensus size: 89
63087831 CGAAGAAAGT
* * * * * *
63087841 AGATCTTGTCTTCCCATATTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
*
63087906 GGCGTGAACTAGATCAGAGATACC
66 GGCGTGAAGTAGATCAGAGATACC
* *
63087930 AGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
63087995 GGCGTGAAGTAGATCAGAGATACC
66 GGCGTGAAGTAGATCAGAGATACC
*
63088019 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
*
63088084 GGCGTGAAGTAGATCAGAGATAAC
66 GGCGTGAAGTAGATCAGAGATACC
* *
63088108 AGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC-AA--AGAAAGCAGATCTTGTCTTCATGT
63088173 ACTGGCGTGAAGTAGATCAGAGATACC
63 ACTGGCGTGAAGTAGATCAGAGATACC
* *
63088200 AGATCTTGCCTTCCCATATTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* *
63088265 AGCGTGAAGTAGATCAGAGATAAC
66 GGCGTGAAGTAGATCAGAGATACC
* *
63088289 AAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC-AA--AGAAAGCAGATCTTGTCTTCATGT
63088354 ACTGGCGTGAAGTAGATCAGAGATACC
63 ACTGGCGTGAAGTAGATCAGAGATACC
*
63088381 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* *
63088446 GGCGTGAAGTAGATTAGAGATAAC
66 GGCGTGAAGTAGATCAGAGATACC
* * * * *
63088470 AAATCTTGCCTTCTCATACTGGTTGCAAAGCAGATCGAATGAAAAAGCAGATCTTGTCTTCATGT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC-AA--AGAAAGCAGATCTTGTCTTCATGT
63088535 ACTGGCGTGAAGTAGATCAGAGATACC
63 ACTGGCGTGAAGTAGATCAGAGATACC
* * *
63088562 AGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCTTGTCTTCATATACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* *
63088627 GGCGTGAAGTAGATCAAAGATAAC
66 GGCGTGAAGTAGATCAGAGATACC
* * * *
63088651 AGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
*
63088716 GGCGTGAAGTAGATCAAAGATACC
66 GGCGTGAAGTAGATCAGAGATACC
* *** * * * * * * *
63088740 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
*
63088804 GGCGTGAAGTAGATCAAAGATACC
66 GGCGTGAAGTAGATCAGAGATACC
* * * * *
63088828 CGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCGGATCTTGTCTTC
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTC
63088886 CCATACTGGT
Statistics
Matches: 872, Mismatches: 74, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
88 78 0.09
89 540 0.62
90 6 0.01
91 6 0.01
92 242 0.28
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (89 bp):
AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
GGCGTGAAGTAGATCAGAGATACC
Found at i:63088162 original size:270 final size:267
Alignment explanation
Indices: 63087841--63088885 Score: 1563
Period size: 270 Copynumber: 3.9 Consensus size: 267
63087831 CGAAGAAAGT
* * * *
63087841 AGATCTTGTCTTCCCATATTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
*
63087906 GGCGTGAACTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAGA
66 GGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAGA
*
63087971 AAGTAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCAT
131 AAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCAT
*
63088036 ACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAG
196 ACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAG
63088101 AGATAAC
261 AGATAAC
* *
63088108 AGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGT
1 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAA-G--AAAGCAGATCTTGTCTTCATGT
* *
63088173 ACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATATTGGTGGCGAAGCAGATCAA
63 ACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAA
* * * *
63088238 AGAAAGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCAGAGATAACAAATCTTGCCTTCC
128 AGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCC
*
63088303 CATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
193 CATACTGGTGGCGAAGCAGATC-AA--AGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
*
63088368 GATCAGAGATACC
255 GATCAGAGATAAC
*
63088381 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
* * * * *
63088446 GGCGTGAAGTAGATTAGAGATAACAAATCTTGCCTTCTCATACTGGTTGCAAAGCAGATCGAATG
66 GGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATC-AA--
* *
63088511 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGTCTTCC
128 AGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCC
* *
63088576 CATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCTTGTCTTCATATACTGGCGTGAAGTAGAT
193 CATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGAT
*
63088641 CAAAGATAAC
258 CAGAGATAAC
* *
63088651 AGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
* * *** * * * *
63088716 GGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCGAAG
66 GGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTG-GCAAAGCAGATCAAAG
* * * * *
63088779 AAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATACCCGATCTTGTCTTCCCA
130 AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCA
* * *
63088844 TACTGGTGGCGAAGTAGATCGAAGAAAGCGGATCTTGTCTTC
195 TACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTC
63088886 CCATACTGGT
Statistics
Matches: 705, Mismatches: 63, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
266 100 0.14
267 33 0.05
268 2 0.00
269 8 0.01
270 389 0.55
271 5 0.01
272 3 0.00
273 165 0.23
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (267 bp):
AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
GGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAGA
AAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCAT
ACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAG
AGATAAC
Found at i:63088239 original size:181 final size:180
Alignment explanation
Indices: 63087841--63088885 Score: 1582
Period size: 181 Copynumber: 5.8 Consensus size: 180
63087831 CGAAGAAAGT
* * * * * *
63087841 AGATCTTGTCTTCCCATATTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* * *
63087906 GGCGTGAACTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATC-AA-A
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
* *
63087969 GAAAGTAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
131 AAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
*
63088019 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
*
63088084 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAGG
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G
63088149 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
130 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
* *
63088200 AGATCTTGCCTTCCCATATTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* *
63088265 AGCGTGAAGTAGATCAGAGATAACAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGG
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G
63088330 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
130 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
*
63088381 AGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* * * * *
63088446 GGCGTGAAGTAGATTAGAGATAACAAATCTTGCCTTCTCATACTGGTTGCAAAGCAGATCGAATG
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G
63088511 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
130 AAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
* * *
63088562 AGATCTTGTCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAACAGATCTTGTCTTCATATACT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* * * *
63088627 GGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAAG-
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
*
63088691 -AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACC
131 AAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
* *** * * * * * * *
63088740 AGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATT
1 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
* * * * *
63088804 GGCGTGAAGTAGATCAAAGATACCCGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG-
66 GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
*
63088868 -AAAGCGGATCTTGTCTTC
131 AAAAGCAGATCTTGTCTTC
63088886 CCATACTGGT
Statistics
Matches: 806, Mismatches: 58, Indels: 7
0.93 0.07 0.01
Matches are distributed among these distances:
177 112 0.14
178 180 0.22
179 2 0.00
180 1 0.00
181 511 0.63
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (180 bp):
AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTACT
GGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
AAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACC
Found at i:63089466 original size:21 final size:22
Alignment explanation
Indices: 63089437--63089477 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
63089427 AGGAAGCAAT
*
63089437 ATTTTTTTTCCTTCT-TTTTCG
1 ATTTATTTTCCTTCTCTTTTCG
*
63089458 ATTTATTTTCTTTCTCTTTT
1 ATTTATTTTCCTTCTCTTTT
63089478 TCGGCCTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.73
Consensus pattern (22 bp):
ATTTATTTTCCTTCTCTTTTCG
Found at i:63090224 original size:3 final size:3
Alignment explanation
Indices: 63090204--63090269 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
63090194 GGGTCCCTTG
** *
63090204 TTA TTAA TTA TT- TTA TTA TTA AAA TTA TTTA TTT TTA TTA -TA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
63090249 TTTA TTA TTA TTGA TTA TTA T
1 -TTA TTA TTA TT-A TTA TTA T
63090270 CATATTTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 4 0.08
3 35 0.69
4 12 0.24
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:63090257 original size:10 final size:10
Alignment explanation
Indices: 63090227--63090269 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
63090217 TATTATTAAA
63090227 ATTATTTATT
1 ATTATTTATT
*
63090237 TTTA-TTA-T
1 ATTATTTATT
63090245 ATTATTTATT
1 ATTATTTATT
*
63090255 ATTATTGATT
1 ATTATTTATT
63090265 ATTAT
1 ATTAT
63090270 CATATTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 4 0.14
9 6 0.21
10 18 0.64
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTATTTATT
Found at i:63090259 original size:15 final size:15
Alignment explanation
Indices: 63090204--63090259 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
63090194 GGGTCCCTTG
* *
63090204 TTATTAATTATTTTA
1 TTATTTATTATTATA
**
63090219 TTA-TTAAAATTAT-
1 TTATTTATTATTATA
63090232 TTATTT-TTATTATA
1 TTATTTATTATTATA
63090246 TTATTTATTATTAT
1 TTATTTATTATTAT
63090260 TGATTATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
13 8 0.25
14 14 0.44
15 10 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATTTATTATTATA
Found at i:63090265 original size:22 final size:20
Alignment explanation
Indices: 63090205--63090266 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 20
63090195 GGTCCCTTGT
*
63090205 TATTAATTATTTTATTATTAA
1 TATTATTTATTTTATTATT-A
*
63090226 AATTATTTA-TTT-TTATTA
1 TATTATTTATTTTATTATTA
63090244 TATTATTTATTATTATTGATTA
1 TATTATTTATT-TTATT-ATTA
63090266 T
1 T
63090267 TATCATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 9 0.26
19 6 0.18
20 5 0.15
21 9 0.26
22 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TATTATTTATTTTATTATTA
Found at i:63101259 original size:19 final size:18
Alignment explanation
Indices: 63101223--63101261 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63101213 TTTTTAAATT
* *
63101223 ATTATTTAATTAATTATA
1 ATTAATTAATTAAGTATA
63101241 ATTAATTAACTTAAGTATA
1 ATTAATTAA-TTAAGTATA
63101260 AT
1 AT
63101262 GCGAGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
ATTAATTAATTAAGTATA
Found at i:63101395 original size:17 final size:18
Alignment explanation
Indices: 63101368--63101402 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
63101358 TAATTGGGTT
63101368 GAAATATAATTTAATTAA
1 GAAATATAATTTAATTAA
63101386 GAAA-ATAATTTAATTAA
1 GAAATATAATTTAATTAA
63101403 TTTATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
GAAATATAATTTAATTAA
Found at i:63105514 original size:109 final size:110
Alignment explanation
Indices: 63105320--63105529 Score: 278
Period size: 109 Copynumber: 1.9 Consensus size: 110
63105310 TTAAAGTTGC
* * * * * * *
63105320 ATAACAAGTGGTTAAAATCTAAACAATGAATCAAACCCCAAATTTGTGGTCTATTGATTGACTGC
1 ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
*
63105385 CTATTTTCTATAAAAATAGCCTAAATTCGAGTCATCTATGCACCT
66 CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATCTATGCACCT
* ** * *
63105430 ATAACAAATGATTAAAATCTAAATAATGAACCAAA-CCGTAAGTTGTGATCCATTGATCGAGTGT
1 ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
* *
63105494 TTATTTTCTATAAAAATAGCCTAGATTCAAGTCATC
66 CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATC
63105530 GATGTGCCTA
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
109 54 0.64
110 31 0.36
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (110 bp):
ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATCTATGCACCT
Found at i:63110585 original size:4 final size:4
Alignment explanation
Indices: 63110572--63110601 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
63110562 AACAACAACA
63110572 AAAT -AAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
63110602 AGATGACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:63110890 original size:15 final size:16
Alignment explanation
Indices: 63110859--63110892 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
63110849 TTTATGCAAG
63110859 TATGTATATACAAGTT
1 TATGTATATACAAGTT
63110875 TATGTATATA-AAGTT
1 TATGTATATACAAGTT
63110890 TAT
1 TAT
63110893 AAAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (16 bp):
TATGTATATACAAGTT
Found at i:63111793 original size:6 final size:6
Alignment explanation
Indices: 63111782--63111821 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
63111772 GTACTTCAAA
* *
63111782 AAAAAT AAAAAT AAAAAT AAAAA- CAAAAC AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
63111822 GAAGAGTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (6 bp):
AAAAAT
Found at i:63111809 original size:17 final size:17
Alignment explanation
Indices: 63111789--63111821 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63111779 AAAAAAAATA
*
63111789 AAAATAAAAATAAAAAC
1 AAAACAAAAATAAAAAC
63111806 AAAACAAAAATAAAAA
1 AAAACAAAAATAAAAA
63111822 GAAGAGTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAACAAAAATAAAAAC
Found at i:63112127 original size:18 final size:20
Alignment explanation
Indices: 63112092--63112128 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
63112082 GGTGCGGCGC
63112092 CTAGGGTTCTTTTGTTTCTG
1 CTAGGGTTCTTTTGTTTCTG
63112112 CTAGGGTT-TTTT-TTTCT
1 CTAGGGTTCTTTTGTTTCT
63112129 TTTTTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.05, C:0.14, G:0.22, T:0.59
Consensus pattern (20 bp):
CTAGGGTTCTTTTGTTTCTG
Found at i:63112776 original size:119 final size:121
Alignment explanation
Indices: 63112565--63112928 Score: 516
Period size: 119 Copynumber: 2.9 Consensus size: 121
63112555 TAATCTTTAA
* *
63112565 CCTACTCTACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTATCTTGGG
1 CCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
* *
63112630 AAGATAAGATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAG-AA-T
66 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAAATT
* *
63112684 CCTACTCCACTACTGCTTAGGGAGATAGGACTGATGGCTTAAAACTGCTTCTCCACTATCTTGGG
1 CCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
*
63112749 AAGAGAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTT
66 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAG-----A-AA--TT
* *
63112813 CAACTTACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTATCTT
1 C--C-TACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTT
* *
63112878 AGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGA
63 GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
63112929 TAAGACTAAT
Statistics
Matches: 218, Mismatches: 14, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
119 109 0.50
126 2 0.01
129 2 0.01
131 1 0.00
132 104 0.48
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (121 bp):
CCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAAATT
Found at i:63112879 original size:44 final size:46
Alignment explanation
Indices: 63112820--63112977 Score: 136
Period size: 44 Copynumber: 3.6 Consensus size: 46
63112810 CTTCAACTTA
*
63112820 CTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAATCTGCTT
1 CTCCACTACTACTTAGGGAGATAAGACAAATGGCTTAAATCTGCTT
* * ** *
63112866 CTCCACTA-T-CTTAGGAAGATAAGATTCACCAT--CTTCGA--T-CTA
1 CTCCACTACTACTTAGGGAGATAAGA--CA-AATGGCTTAAATCTGCTT
* * *
63112908 CTCCACTACTGCTTAGGGAGATAAGACTAATGGCTAAAATCTGCTT
1 CTCCACTACTACTTAGGGAGATAAGACAAATGGCTTAAATCTGCTT
*
63112954 CTCCACTA-T-CTTGGGGAGATAAGA
1 CTCCACTACTACTTAGGGAGATAAGA
63112978 TTCACCATCT
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
41 2 0.02
42 11 0.12
43 5 0.06
44 41 0.47
45 7 0.08
46 20 0.23
47 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (46 bp):
CTCCACTACTACTTAGGGAGATAAGACAAATGGCTTAAATCTGCTT
Found at i:63112879 original size:88 final size:88
Alignment explanation
Indices: 63112776--63113013 Score: 282
Period size: 88 Copynumber: 2.7 Consensus size: 88
63112766 CTTCGATCTG
*
63112776 CTCCACTACTGCTTAGGGAGA-CAGAATCTACAATCTTCAA-CTTACTCCACTACTACTTAGGGA
1 CTCCACTA-T-CTTAGGGAGATAAGAATC-ACAATCTTCAATC-TACTCCACTACTACTTAGGGA
* *
63112839 GATAGGACAAATGGCTTAAATCTGCTT
62 GATAAGACAAATGGCTAAAATCTGCTT
* * * * *
63112866 CTCCACTATCTTAGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGATA
1 CTCCACTATCTTAGGGAGATAAGAATCACAATCTTCAATCTACTCCACTACTACTTAGGGAGATA
*
63112931 AGACTAATGGCTAAAATCTGCTT
66 AGACAAATGGCTAAAATCTGCTT
* * * * * * *
63112954 CTCCACTATCTTGGGGAGATAAGATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGG
1 CTCCACTATCTTAGGGAGATAAGAATCACAATCTTCAATCTACTCCACTACTACTTAGGG
63113014 GGACAGAATC
Statistics
Matches: 133, Mismatches: 13, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
88 118 0.89
89 7 0.05
90 8 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (88 bp):
CTCCACTATCTTAGGGAGATAAGAATCACAATCTTCAATCTACTCCACTACTACTTAGGGAGATA
AGACAAATGGCTAAAATCTGCTT
Found at i:63112923 original size:132 final size:132
Alignment explanation
Indices: 63112686--63112928 Score: 423
Period size: 132 Copynumber: 1.8 Consensus size: 132
63112676 GACAGAATCC
* ** *
63112686 TACTCCACTACTGCTTAGGGAGATAGGACTGATGGCTTAAAACTGCTTCTCCACTATCTTGGGAA
1 TACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAAACTGCTTCTCCACTATCTTAGGAA
*
63112751 GAGAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAA
66 GAGAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAA
63112816 CT
131 CT
*
63112818 TACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTATCTTAGGAA
1 TACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAAACTGCTTCTCCACTATCTTAGGAA
*
63112883 GATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGA
66 GAGAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGA
63112929 TAAGACTAAT
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (132 bp):
TACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAAACTGCTTCTCCACTATCTTAGGAA
GAGAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAA
CT
Found at i:63113317 original size:89 final size:89
Alignment explanation
Indices: 63113185--63114239 Score: 1280
Period size: 89 Copynumber: 11.9 Consensus size: 89
63113175 TACTTCGTCA
* *
63113185 TCAGTATAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
63113250 TGCTATCTTCAGTCTGCTCTGCTG
66 TGCTATCTTCAGTCTGCTCTGCTG
* * * *
63113274 TCAGTATA-GAGAGGCAAGGCTGATGTCTTCGATCTGCTTCGCCGTCAATACAGGAAGGCAAGAT
1 TCAGTACAGGA-AGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
63113338 CTGCTATCTTCAGTCTGCT-TCGCTG
65 CTGCTATCTTCAGTCTGCTCT-GCTG
* * * * * *
63113363 TCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATATGCTTCGCTGTCAGTATAGGAAGGCAAAATT
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* * * **
63113428 TACTATTTTTAGTCTGCTCCACTG
66 TGCTATCTTCAGTCTGCTCTGCTG
*
63113452 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCAGTCAGTACAGGAAGGCAAGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
*
63113517 TGCTATCTTCAGTCTGCTCCGCTG
66 TGCTATCTTCAGTCTGCTCTGCTG
* * * * *
63113541 TCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATATGCTTCGCTGTCAGTACAGGAAGGTAAAATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* * * **
63113606 TACTATTTTAAGTCTGCTCCACTG
66 TGCTATCTTCAGTCTGCTCTGCTG
* * * *
63113630 TCAGTACAGGAAGGCAAGGCGGGTTTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* * *
63113695 TGCTATATTTAGTCTGCTCCGCTG
66 TGCTATCTTCAGTCTGCTCTGCTG
* ** * * * *
63113719 TCAGTACAAGAAGGCAAGGTTGGTGTCTCCGATCTGCTTCGCTGCCAGTACAGGAAGGCATGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* *
63113784 TGCTATCTTTAGTCTGCT-TCACTG
66 TGCTATCTTCAGTCTGCTCT-GCTG
* * * * * * *
63113808 TTAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGTTTCGCCGTTAGTACAAGAAGACATGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* *
63113873 TGCTATCTTTAGTCTGCT-TCACTG
66 TGCTATCTTCAGTCTGCTCT-GCTG
* * * *
63113897 TCAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCACCGTCAGTACAGGGAGGCATGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
*
63113962 TGCTATCCTT-ATTCTGCT-TCGCTG
66 TGCTAT-CTTCAGTCTGCTCT-GCTG
* * * * * *
63113986 TCGGTACAGGAAAGCAAGACTGGCT-TCTTCGATCTACTTCACTGTCAGTACAGGAAGGCATGAT
1 TCAGTACAGGAAGGCAAGACTGG-TGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* *
63114050 CTACTATCTTTAGTCTGCT-TCGCTG
65 CTGCTATCTTCAGTCTGCTCT-GCTG
* *
63114075 TCAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCATGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
* *
63114140 TTCTATCTTCAGTCTGCTCCGCTG
66 TGCTATCTTCAGTCTGCTCTGCTG
* * * * **
63114164 TCAGTATAAGAAAGCAAGACTGGTTTCTTCGATCTGCTTCGCCGTCAGTACAGGGGGGCAAGATC
1 TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
*
63114229 TGCAATCTTCA
66 TGCTATCTTCA
63114240 TTGATCTGTG
Statistics
Matches: 855, Mismatches: 101, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
88 7 0.01
89 842 0.98
90 6 0.01
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (89 bp):
TCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATC
TGCTATCTTCAGTCTGCTCTGCTG
Found at i:63116467 original size:25 final size:24
Alignment explanation
Indices: 63116419--63116484 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 24
63116409 GGAAGAAAGA
* *
63116419 ATGAAAGAATAATTATTCATAAATG
1 ATGAAAGAAT-ATTACTCAAAAATG
63116444 ATGAAAGAATATTAGCTCAAAAATG
1 ATGAAAGAATATTA-CTCAAAAATG
63116469 ATCGCAAAGATATATT
1 AT-G-AAAGA-ATATT
63116485 TCATTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 20 0.57
26 1 0.03
27 5 0.14
28 5 0.14
ACGTcount: A:0.50, C:0.08, G:0.14, T:0.29
Consensus pattern (24 bp):
ATGAAAGAATATTACTCAAAAATG
Found at i:63117908 original size:19 final size:19
Alignment explanation
Indices: 63117884--63117923 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
63117874 TTTAAAATAC
63117884 AAAACATGATGAAAACTAT
1 AAAACATGATGAAAACTAT
63117903 AAAACATGATGAAAACTAT
1 AAAACATGATGAAAACTAT
63117922 AA
1 AA
63117924 CTCAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAACATGATGAAAACTAT
Found at i:63118672 original size:107 final size:104
Alignment explanation
Indices: 63118485--63118701 Score: 285
Period size: 106 Copynumber: 2.0 Consensus size: 104
63118475 GGTTTTCAAA
* *
63118485 ACCTATACTTTGAAACTTTAAAAGGGTATTTGGCTATTTGGCTAAAAGAGAAATCGAAACCCAGC
1 ACCT-TACTTTGAAACTTTAAAAGGATATTTGGCTATTTGGCGAAAAGAGAAATCGAAACCCAGC
* *
63118550 TCATTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAATATT
65 ACATTAGGGCACG-TTT-TCAAATTTCCAAACGCAAAATATT
* * *
63118592 GCCTTACTTTGAAATTTTCAAAGGATATTTGGCTATTTGGTCGAACGAA-A-AAATCGAAACCCA
1 ACCTTACTTTGAAACTTTAAAAGGATATTTGGCTATTTGG-CGAA--AAGAGAAATCGAAACCCA
* *
63118655 GCACATTAGGGCACGTTTTCAAATTTTCAAATGCAAAATATT
63 GCACATTAGGGCACGTTTTCAAATTTCCAAACGCAAAATATT
63118697 ACCTT
1 ACCTT
63118702 TATTATTTTT
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
105 25 0.26
106 36 0.37
107 33 0.34
108 1 0.01
109 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (104 bp):
ACCTTACTTTGAAACTTTAAAAGGATATTTGGCTATTTGGCGAAAAGAGAAATCGAAACCCAGCA
CATTAGGGCACGTTTTCAAATTTCCAAACGCAAAATATT
Found at i:63119510 original size:2 final size:2
Alignment explanation
Indices: 63119505--63119548 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
63119495 GTAAAAAATG
* * * *
63119505 TA TA TA AA TA TA TA TA TA TA TA TA AA TA TA GA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63119547 TA
1 TA
63119549 GATTATAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (2 bp):
TA
Found at i:63119518 original size:10 final size:10
Alignment explanation
Indices: 63119500--63119568 Score: 56
Period size: 10 Copynumber: 7.3 Consensus size: 10
63119490 TATTCGTAAA
*
63119500 AAATGTATAT
1 AAATATATAT
63119510 AAATATATAT
1 AAATATATAT
63119520 --ATATATAT
1 AAATATATAT
*
63119528 AAATATAGAT
1 AAATATATAT
* *
63119538 ATATATGTAT
1 AAATATATAT
*
63119548 AGAT-TATA-
1 AAATATATAT
*
63119556 AAATGTATAT
1 AAATATATAT
63119566 AAA
1 AAA
63119569 CATGCGTGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
8 11 0.23
9 7 0.15
10 29 0.62
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (10 bp):
AAATATATAT
Found at i:63119528 original size:18 final size:18
Alignment explanation
Indices: 63119505--63119543 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
63119495 GTAAAAAATG
*
63119505 TATATAAATATATATATA
1 TATATAAATATAGATATA
63119523 TATATAAATATAGATATA
1 TATATAAATATAGATATA
63119541 TAT
1 TAT
63119544 GTATAGATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
TATATAAATATAGATATA
Found at i:63134061 original size:30 final size:30
Alignment explanation
Indices: 63134001--63134079 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 30
63133991 ATGGATATTA
* *
63134001 GCATGCTTCAGCTGTGTT-CCTGGTTACTT
1 GCATGCTGCAGCTGTGTTGCATGGTTACTT
* *
63134030 GCATGCTGCAGCTCTGTTGCATGGTTTCTT
1 GCATGCTGCAGCTGTGTTGCATGGTTACTT
* *
63134060 GCATGTTGCTGCTGTGTTGC
1 GCATGCTGCAGCTGTGTTGC
63134080 CACCTTTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.09, C:0.23, G:0.28, T:0.41
Consensus pattern (30 bp):
GCATGCTGCAGCTGTGTTGCATGGTTACTT
Found at i:63134366 original size:17 final size:18
Alignment explanation
Indices: 63134336--63134369 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63134326 ATTTAAATTG
63134336 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
63134354 CGGTCGC-GTCGCGTTT
1 CGGTCGCGGTCGCGTTT
63134370 GTCGCAGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.00, C:0.29, G:0.38, T:0.32
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:63141514 original size:14 final size:14
Alignment explanation
Indices: 63141495--63141543 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
63141485 TTGTTTCACT
63141495 AAAAATGATTTTTA
1 AAAAATGATTTTTA
63141509 AAAAATGATTTTTA
1 AAAAATGATTTTTA
* * * *
63141523 GAAAGTAATTTTTG
1 AAAAATGATTTTTA
63141537 AAAAATG
1 AAAAATG
63141544 GTTAGAAGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (14 bp):
AAAAATGATTTTTA
Found at i:63141697 original size:21 final size:21
Alignment explanation
Indices: 63141657--63141697 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
63141647 TGTATATATA
**
63141657 TTTTAATTAATCATGTTTTAG
1 TTTTAATTAATCATAATTTAG
*
63141678 TTTTAATTAATCTTAATTTA
1 TTTTAATTAATCATAATTTA
63141698 CTTAATTAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTTAATTAATCATAATTTAG
Found at i:63142670 original size:36 final size:36
Alignment explanation
Indices: 63142599--63142681 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
63142589 CCGTTATAAA
* * *
63142599 CACTGTCATATGGCATGAATAACATACTCATATATT
1 CACTGTCACATGGCATGAAAAACACACTCATATATT
* *
63142635 TACTGTCACATGGCATGAAAAACACAC-CCTCATATT
1 CACTGTCACATGGCATGAAAAACACACTCAT-ATATT
*
63142671 CACTTTCACAT
1 CACTGTCACAT
63142682 TAGTCATCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 2 0.05
36 37 0.95
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (36 bp):
CACTGTCACATGGCATGAAAAACACACTCATATATT
Found at i:63148157 original size:72 final size:71
Alignment explanation
Indices: 63148061--63148323 Score: 418
Period size: 72 Copynumber: 3.7 Consensus size: 71
63148051 TTATTTGATC
*
63148061 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATCTGTCCACTCAATTGGT
1 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATTGGT
*
63148126 TCAGCCA
66 TC-TCCA
* *
63148133 CAAGTCTCAATGAGTGAGTTGCAAGAGGTTCCCTAATGATCTTGGAATTTGTCCACTCAATTGGT
1 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATTGGT
*
63148198 TCTTCGA
66 TC-TCCA
*
63148205 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATTATCTTGGAATTTGTCCACTCAATTGGT
1 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATTGGT
63148270 TCTCCTA
66 TCTCC-A
* * *
63148277 CAAGTCTAAATGAGTGAGTTTCAAGAGATTCCCCAGTGATCTTGGAA
1 CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAA
63148324 CCAGTCCTGA
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
71 2 0.01
72 174 0.99
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (71 bp):
CAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATTGGT
TCTCCA
Found at i:63150271 original size:56 final size:57
Alignment explanation
Indices: 63150157--63150290 Score: 225
Period size: 56 Copynumber: 2.4 Consensus size: 57
63150147 TCCAGGTTTA
* * *
63150157 ACTATCAATTGTCTATTGACTATACTTTTAACTCCACTAAAAAAGACCAAGACTAAG
1 ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACCAAG
*
63150214 ACTATCAATTGTCTATTGACTACAC-TTTAACTCGACAAAAAAAGACCAAGACCAAG
1 ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACCAAG
63150270 ACTATCAATTGTCTATTGACT
1 ACTATCAATTGTCTATTGACT
63150291 TCACACTTGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
56 49 0.67
57 24 0.33
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (57 bp):
ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACCAAG
Found at i:63154914 original size:23 final size:23
Alignment explanation
Indices: 63154884--63154935 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
63154874 TGCAACTTGG
63154884 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
63154907 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
63154930 TTTCAT
1 TTTCAT
63154936 CTTTTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:63156578 original size:3 final size:3
Alignment explanation
Indices: 63156549--63156605 Score: 73
Period size: 3 Copynumber: 19.3 Consensus size: 3
63156539 TGTAGCATTT
* *
63156549 TTA TTA TT- TTG TTCA TTA TT- CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
63156593 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
63156606 CATCGTATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
2 3 0.06
3 43 0.90
4 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:63157190 original size:24 final size:25
Alignment explanation
Indices: 63157144--63157206 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
63157134 TCTATTTTTC
*
63157144 TTTAT-TATTT-TTT-TATGTTCA-
1 TTTATGTATTTATTTATATGTCCAT
63157165 TTTATGTATTTATTTATATGTCCAT
1 TTTATGTATTTATTTATATGTCCAT
63157190 TTATATGT-TTTATTTAT
1 TT-TATGTATTTATTTAT
63157207 TTATTTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 5 0.14
22 5 0.14
23 3 0.08
24 7 0.19
25 11 0.31
26 5 0.14
ACGTcount: A:0.22, C:0.05, G:0.06, T:0.67
Consensus pattern (25 bp):
TTTATGTATTTATTTATATGTCCAT
Found at i:63157549 original size:108 final size:108
Alignment explanation
Indices: 63157333--63157850 Score: 844
Period size: 108 Copynumber: 4.8 Consensus size: 108
63157323 AGAGAATTTT
* * * * *
63157333 TTTTTAAATGAGGCAATATTTGGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
63157398 CG-TTTTTTTCGTTCAACCAAATGACTTAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAA
63157441 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
63157506 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
*
63157549 TTTTAAAATAAAGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATG-CCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
63157613 CGATTTTTCTCGTTCAACCAAATGG-TTAATATCCTTTTAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
* *
63157655 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCATAAGGTGCTGGGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * **
63157720 CGATTTTTCTCGTTTAACCAAATTGCCAAATATCCTTTTAAAA
66 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
* * *
63157763 TTTTAAAACAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTGAGTGT
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
63157828 CGATTTTTCTCGTTTAACCAAAT
66 CGATTTTTCTCGTTCAACCAAAT
63157851 TGCCAAATAT
Statistics
Matches: 389, Mismatches: 18, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
106 62 0.16
107 81 0.21
108 212 0.54
109 34 0.09
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36
Consensus pattern (108 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAA
Found at i:63157711 original size:214 final size:217
Alignment explanation
Indices: 63157358--63157850 Score: 841
Period size: 214 Copynumber: 2.3 Consensus size: 217
63157348 ATATTTGGCA
*
63157358 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCG-TTTTTTTCGTTCAACCAAATGA
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGA
63157422 CTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACAT
66 CTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACAT
* **
63157487 GCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAATTT
131 GCCATAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCCAAATATCCTTTTAAAATTT
*
63157552 TAAAATAAAGCAATGTTTTGCG
196 TAAAACAAAGCAATGTTTTGCG
63157574 TTTGGAAATTCGAGAAAACATG-CCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATG-
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGA
* *
63157637 GTTAATATCCTTTT-AAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACAT
66 CTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACAT
* *
63157701 GCCATAAGGTGCTGGGTGTCGATTTTTCTCGTTTAACCAAATTGCCAAATATCCTTTTAAAATTT
131 GCCATAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCCAAATATCCTTTTAAAATTT
*
63157766 TAAAACAAGGCAATGTTTTGCG
196 TAAAACAAAGCAATGTTTTGCG
* * *
63157788 TTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTGAGTGTCGATTTTTCTCGTTTAACCAAAT
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
63157851 TGCCAAATAT
Statistics
Matches: 262, Mismatches: 13, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
214 150 0.57
215 70 0.27
216 42 0.16
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (217 bp):
TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGA
CTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACAT
GCCATAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCCAAATATCCTTTTAAAATTT
TAAAACAAAGCAATGTTTTGCG
Found at i:63163048 original size:72 final size:72
Alignment explanation
Indices: 63162947--63163166 Score: 327
Period size: 72 Copynumber: 3.1 Consensus size: 72
63162937 GAATTGACAA
* *
63162947 TGGAATTTGTCCATTCAATTGGTTCTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
63163012 ATGATCT
66 ATGATCT
63163019 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
63163084 ATGATCT
66 ATGATCT
* ** * * * *
63163091 TGGAATTTGTCCACTCAACTGG-TTCCCCGATAAGTCTAAATGAGTGAGTTGCAAGAGATTCCCC
1 TGGAATTTGTCCACTCAATTGGTTTTGCC-ACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCC
*
63163155 AGTGAT-T
65 AATGATCT
63163162 TGGAA
1 TGGAA
63163167 CCGGTCCTGA
Statistics
Matches: 137, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
71 10 0.07
72 127 0.93
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:63164985 original size:35 final size:35
Alignment explanation
Indices: 63164939--63165011 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
63164929 TGGTGACATA
63164939 TTGATGTTTGAGTTAAACTCAAATTACTATTTCCT
1 TTGATGTTTGAGTTAAACTCAAATTACTATTTCCT
63164974 TTGATGTTTGAGTTAAACTCAAATTACTATTTCCT
1 TTGATGTTTGAGTTAAACTCAAATTACTATTTCCT
63165009 TTG
1 TTG
63165012 TTATAAATTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (35 bp):
TTGATGTTTGAGTTAAACTCAAATTACTATTTCCT
Found at i:63165536 original size:81 final size:82
Alignment explanation
Indices: 63165379--63165546 Score: 320
Period size: 81 Copynumber: 2.1 Consensus size: 82
63165369 GGAGACTGCT
63165379 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTTAAGACTATCAATTGTCTATTGACTAC
1 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTTAAGACTATCAATTGTCTATTGACTAC
63165444 ACTTTAACTCGACAAAA
66 ACTTTAACTCGACAAAA
*
63165461 ACAGATTGACTATACTTTTAACTCCACAAACAAAGAC-TAAGACTATCAATTGTCTATTGACTTC
1 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTTAAGACTATCAATTGTCTATTGACTAC
63165525 ACTTTAACTCGACAAAA
66 ACTTTAACTCGACAAAA
63165542 ACAGA
1 ACAGA
63165547 CTAATAAGAC
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 48 0.56
82 37 0.44
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (82 bp):
ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTTAAGACTATCAATTGTCTATTGACTAC
ACTTTAACTCGACAAAA
Found at i:63166157 original size:3 final size:3
Alignment explanation
Indices: 63166149--63166178 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
63166139 ATTGTTAATC
63166149 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
63166179 ACTCATGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:63167172 original size:50 final size:50
Alignment explanation
Indices: 63167107--63167226 Score: 181
Period size: 50 Copynumber: 2.4 Consensus size: 50
63167097 ACTTTTAACA
63167107 ATCAATTGTCTATTGACTATACTTTGAACTCCAC-AAAAAAGACTAAGACCT
1 ATCAATTGTCTATTGACTATACTTT-AACTCCACAAAAAAAGACTAAGA-CT
* * *
63167158 -TCAATTGTCCATTGACTACACTTTAACTCGACAAAAAAAGACTAAGACT
1 ATCAATTGTCTATTGACTATACTTTAACTCCACAAAAAAAGACTAAGACT
63167207 ATCAATTGTCTATTGACTAT
1 ATCAATTGTCTATTGACTAT
63167227 CAATTGGTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 9 0.15
50 53 0.85
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (50 bp):
ATCAATTGTCTATTGACTATACTTTAACTCCACAAAAAAAGACTAAGACT
Found at i:63170326 original size:23 final size:22
Alignment explanation
Indices: 63170299--63170381 Score: 57
Period size: 22 Copynumber: 3.8 Consensus size: 22
63170289 ATTGTTTAGT
63170299 TGCTGGAAATTGAGATGTTTTA
1 TGCTGGAAATTGAGATGTTTTA
* **
63170321 TGGCT-GTAATTGAG-TGTATAAA
1 T-GCTGGAAATTGAGATGT-TTTA
* *
63170343 TGTTGTAAATTGA-AGTGTTTTA
1 TGCTGGAAATTGAGA-TGTTTTA
63170365 TTGCTGGAAATTG-GATG
1 -TGCTGGAAATTGAGATG
63170382 CATGGTATAA
Statistics
Matches: 44, Mismatches: 10, Indels: 14
0.65 0.15 0.21
Matches are distributed among these distances:
21 5 0.11
22 22 0.50
23 17 0.39
ACGTcount: A:0.28, C:0.04, G:0.28, T:0.41
Consensus pattern (22 bp):
TGCTGGAAATTGAGATGTTTTA
Found at i:63170690 original size:21 final size:20
Alignment explanation
Indices: 63170644--63170691 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
63170634 AAAATAATAA
*
63170644 TTTAG-ATTATATATTATTT
1 TTTAGTATTATATATTATAT
63170663 TTATAGTATTATATATTATGAT
1 TT-TAGTATTATATATTAT-AT
63170685 TTTAGTA
1 TTTAGTA
63170692 AATTCATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 17 0.68
22 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TTTAGTATTATATATTATAT
Found at i:63170742 original size:38 final size:37
Alignment explanation
Indices: 63170656--63170755 Score: 98
Period size: 37 Copynumber: 2.7 Consensus size: 37
63170646 TAGATTATAT
* * *
63170656 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAA
1 ATTATATTTAATAGTAAT-TATATTAAGATTTTAGTAA
*
63170693 ATTCATA--TAATAGTAATTATATTAAGAATTTTATTAA
1 ATT-ATATTTAATAGTAATTATATTAAG-ATTTTAGTAA
* *
63170730 ATTATATTTAATAATAATTATGTTAA
1 ATTATATTTAATAGTAATTATATTAA
63170756 AATATGGTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
36 11 0.21
37 23 0.44
38 18 0.35
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (37 bp):
ATTATATTTAATAGTAATTATATTAAGATTTTAGTAA
Found at i:63173609 original size:23 final size:23
Alignment explanation
Indices: 63173583--63173676 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
63173573 AAGTTAGAAG
63173583 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
63173606 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
63173629 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
63173652 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
63173675 AG
1 AG
63173677 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:63178113 original size:23 final size:23
Alignment explanation
Indices: 63178087--63178180 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
63178077 AAGTTAGAAG
63178087 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
63178110 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
63178133 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
63178156 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
63178179 AG
1 AG
63178181 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:63181598 original size:56 final size:55
Alignment explanation
Indices: 63181474--63181608 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 55
63181464 TCCACAAAAA
* * *
63181474 AAGACCATCAATTGTCGATTGACTATACTTTAACTCCAAAAAAAAGACTAAGACT
1 AAGACTATCAATTGTCTATTGACTACACTTTAACTCCAAAAAAAAGACTAAGACT
* * *
63181529 AACACTATCAATTGTCTATTGACTACACTTTAACTCGACAAAAAAGGACTAAGACT
1 AAGACTATCAATTGTCTATTGACTACACTTTAACTCCA-AAAAAAAGACTAAGACT
63181585 AAGACTATCAATTGTCTATTGACT
1 AAGACTATCAATTGTCTATTGACT
63181609 TCACACTTGC
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 33 0.46
56 39 0.54
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (55 bp):
AAGACTATCAATTGTCTATTGACTACACTTTAACTCCAAAAAAAAGACTAAGACT
Found at i:63198107 original size:72 final size:72
Alignment explanation
Indices: 63197889--63198109 Score: 406
Period size: 72 Copynumber: 3.1 Consensus size: 72
63197879 GAATTGACAA
63197889 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63197954 ATGATCT
66 ATGATCT
* * *
63197961 TGAAATTTGTCCACTCAATTGGTTCTGCGACAAATCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63198026 ATGATCT
66 ATGATCT
63198033 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
*
63198098 GTGATCT
66 ATGATCT
63198105 TGGAA
1 TGGAA
63198110 CCGGTCCTGA
Statistics
Matches: 142, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 142 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Done.