Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 208 of 208
Found at i:64042873 original size:56 final size:55
Alignment explanation
Indices: 64042750--64042890 Score: 144
Period size: 56 Copynumber: 2.5 Consensus size: 55
64042740 CCATTCCATA
* *
64042750 ATTTTTCTTAATTTGGTATCTAAATTTTTTACTCAATTTGATATTCTAATTTGACCC
1 ATTTTTCTTAATTTGGTATCTAAA-TTTTTACTCAATTTGATATTCAAACTTGA-CC
* * * *
64042807 ATTTTT-TTAATTTGGTACCTAAATTTTTAGGCTCGATTTGGTACTT-AAACTTG-TC
1 ATTTTTCTTAATTTGGTATCTAAATTTTTA--CTCAATTTGATA-TTCAAACTTGACC
* *
64042862 ATTTTTCTTAATTTTGTATTTAAATTTTT
1 ATTTTTCTTAATTTGGTATCTAAATTTTT
64042891 TTTAGATTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
55 13 0.18
56 35 0.49
57 21 0.30
58 2 0.03
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (55 bp):
ATTTTTCTTAATTTGGTATCTAAATTTTTACTCAATTTGATATTCAAACTTGACC
Found at i:64045684 original size:151 final size:151
Alignment explanation
Indices: 64045410--64045717 Score: 580
Period size: 151 Copynumber: 2.0 Consensus size: 151
64045400 TAACTATTGA
64045410 ATTAAAATGTTAAAATATGAAAAGTACATAGATTAAATTCTAACTCCATGAAAGTACAGGGACTA
1 ATTAAAATGTTAAAATATGAAAAGTACATAGATTAAATTCTAACTCCATGAAAGTACAGGGACTA
*
64045475 GTAGCACATTTTGACCATTGTTAAATTATGCATAATATTATTTATTAACAAATATAAACCCAATA
66 GTAGCACATTTTGACCATTATTAAATTATGCATAATATTATTTATTAACAAATATAAACCCAATA
64045540 ACTTAAATAAACTATACATAT
131 ACTTAAATAAACTATACATAT
* *
64045561 ATTAAAATGTTGAAATATGAAAAGTACATAGATTAAATTCTAAGTCCATGAAAGTACAGGGACTA
1 ATTAAAATGTTAAAATATGAAAAGTACATAGATTAAATTCTAACTCCATGAAAGTACAGGGACTA
*
64045626 GTAGCACATTTTGACCATTATTAAATTATGCATAATATTATTTATTAATAAATATAAACCCAATA
66 GTAGCACATTTTGACCATTATTAAATTATGCATAATATTATTTATTAACAAATATAAACCCAATA
64045691 ACTTAAATAAACTATACATAT
131 ACTTAAATAAACTATACATAT
64045712 ATTAAA
1 ATTAAA
64045718 CTTATTTTTT
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 153 1.00
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (151 bp):
ATTAAAATGTTAAAATATGAAAAGTACATAGATTAAATTCTAACTCCATGAAAGTACAGGGACTA
GTAGCACATTTTGACCATTATTAAATTATGCATAATATTATTTATTAACAAATATAAACCCAATA
ACTTAAATAAACTATACATAT
Found at i:64054374 original size:18 final size:19
Alignment explanation
Indices: 64054352--64054398 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
64054342 TATGAATGTT
64054352 TTATTTTTTA-ATTTCCAAA
1 TTATTTTTTATATTT-CAAA
* *
64054371 -TATTTTATATATTTTAAA
1 TTATTTTTTATATTTCAAA
64054389 TTATTTTTTA
1 TTATTTTTTA
64054399 CGTGGCATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (19 bp):
TTATTTTTTATATTTCAAA
Found at i:64055615 original size:178 final size:176
Alignment explanation
Indices: 64055288--64055630 Score: 481
Period size: 178 Copynumber: 1.9 Consensus size: 176
64055278 ATGTTACACA
* *
64055288 TTTTAAAAGGCTAATGGTCAAAATTAACTAAAAAAGAATATGAGCAAAATTGACAAAAGATGTAA
1 TTTTAAAAGGCTAATGGTCAAAATTAACTAAAAAAGAATAAGAGCAAAATTGACAAAAGATGCAA
* * * * **
64055353 ACGTTGAGAATTAAATTAATAAAAAATTCAGATTTGTCATTTAAACCAATTAACTTGACTTTAAA
66 ACATTGAGAACTAAATTAACAAAAAAATCAGATTTGTCATTTAAACCAATTAACTTGAAATTAAA
*
64055418 TCTAATTCAATTGAATTTGATTATTAAATATAAAAAAATTGACTCC
131 TCTAATTCAATCGAATTTGATTATTAAATATAAAAAAATTGACTCC
* * * *
64055464 TTTTGAAATGCTAATGGTCAAATTTAGCTTTAAAAAAAGAATAAGAGCAAAATTGACAAAAGATG
1 TTTTAAAAGGCTAATGGTCAAAATTAAC--T-AAAAAAGAATAAGAGCAAAATTGACAAAAGATG
* * *
64055529 CAAACATTGAGAGCTAAATTGACAAAAAAAT-GGATTTGTCATTTAAACCAATTAACTTGAAATT
63 CAAACATTGAGAACTAAATTAACAAAAAAATCAGATTTGTCATTTAAACCAATTAACTTGAAATT
** *
64055593 AAATCTAATTCGGTCGAATTTGATTATTAAGTATAAAA
128 AAATCTAATTCAATCGAATTTGATTATTAAATATAAAA
64055631 TATTTGAATC
Statistics
Matches: 145, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
176 24 0.17
178 65 0.45
179 56 0.39
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (176 bp):
TTTTAAAAGGCTAATGGTCAAAATTAACTAAAAAAGAATAAGAGCAAAATTGACAAAAGATGCAA
ACATTGAGAACTAAATTAACAAAAAAATCAGATTTGTCATTTAAACCAATTAACTTGAAATTAAA
TCTAATTCAATCGAATTTGATTATTAAATATAAAAAAATTGACTCC
Found at i:64067772 original size:26 final size:26
Alignment explanation
Indices: 64067724--64067773 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
64067714 TAGAAAATTC
*
64067724 AATTAATTAAATTTATTTAATTAAAA
1 AATTAATTAAATTTATTGAATTAAAA
*
64067750 AATTAATT-AATTTACTTGGATTAA
1 AATTAATTAAATTTA-TTGAATTAA
64067774 CATCCACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (26 bp):
AATTAATTAAATTTATTGAATTAAAA
Found at i:64067900 original size:20 final size:22
Alignment explanation
Indices: 64067869--64067914 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
64067859 ATTTCGTAAC
64067869 AAAACGATAACA-TAAGTGATT
1 AAAACGATAACATTAAGTGATT
64067890 AAAAC-ATAACATTAAGTGATT
1 AAAACGATAACATTAAGTGATT
64067911 AAAA
1 AAAA
64067915 TACAACTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 6 0.25
21 18 0.75
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.24
Consensus pattern (22 bp):
AAAACGATAACATTAAGTGATT
Found at i:64071642 original size:14 final size:14
Alignment explanation
Indices: 64071623--64071653 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64071613 ACAGTACATT
*
64071623 TTTTTTTAATTTTA
1 TTTTTTTAATGTTA
64071637 TTTTTTTAATGTTA
1 TTTTTTTAATGTTA
64071651 TTT
1 TTT
64071654 GTAGTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTTTTAATGTTA
Found at i:64071708 original size:13 final size:14
Alignment explanation
Indices: 64071690--64071727 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
64071680 AATCTAAATC
*
64071690 TAATTATAA-AAAA
1 TAATTAAAATAAAA
64071703 TAATTAAAATAAAA
1 TAATTAAAATAAAA
64071717 TATATTAAAAT
1 TA-ATTAAAAT
64071728 TACGGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.36
14 6 0.27
15 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAATTAAAATAAAA
Found at i:64071716 original size:15 final size:15
Alignment explanation
Indices: 64071699--64071727 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64071689 CTAATTATAA
64071699 AAAATA-ATTAAAAT
1 AAAATATATTAAAAT
64071713 AAAATATATTAAAAT
1 AAAATATATTAAAAT
64071728 TACGGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATATATTAAAAT
Found at i:64072637 original size:31 final size:32
Alignment explanation
Indices: 64072570--64072639 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
64072560 AAATTAAATG
* * **
64072570 TTCTTATGAAAAATTAATTCTTTCACATTTTT
1 TTCTTATGAAAAATTAAATCGTTCACAAATTT
*
64072602 TTCTTATGAAAAATTAAAT-GTTCATAAATTT
1 TTCTTATGAAAAATTAAATCGTTCACAAATTT
64072633 TTCTTAT
1 TTCTTAT
64072640 ATAATTATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.51
Consensus pattern (32 bp):
TTCTTATGAAAAATTAAATCGTTCACAAATTT
Found at i:64078713 original size:17 final size:17
Alignment explanation
Indices: 64078693--64078733 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
64078683 TTATTTATCA
*
64078693 TTTTTATTTCTCTTTCT
1 TTTTTATTTCTCTTTAT
*
64078710 TTTTTATTTCTGTTTAT
1 TTTTTATTTCTCTTTAT
64078727 TTTTTAT
1 TTTTTAT
64078734 ACATATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTATTTCTCTTTAT
Found at i:64079672 original size:3 final size:3
Alignment explanation
Indices: 64079664--64079726 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
64079654 AATCTTTTTC
64079664 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
64079712 AAA TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT
64079727 GTTAGTTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:64080025 original size:23 final size:23
Alignment explanation
Indices: 64079998--64080042 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
64079988 TTCTACATAC
64079998 ATATCTTTGATTTATATATATAT
1 ATATCTTTGATTTATATATATAT
64080021 ATATCTTTGATTTATATATATA
1 ATATCTTTGATTTATATATATA
64080043 ATTATAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (23 bp):
ATATCTTTGATTTATATATATAT
Found at i:64082916 original size:26 final size:28
Alignment explanation
Indices: 64082852--64082916 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 28
64082842 ATTCAAATCA
* * * *
64082852 AATTCTATATTTTATTTAATATATAATT
1 AATTTTATATTTTAATTAATATAAAAAT
64082880 AATTTTA-ATTTTAATT-ATATAAAAAT
1 AATTTTATATTTTAATTAATATAAAAAT
64082906 -ATTTTATATTT
1 AATTTTATATTT
64082917 AAAATAATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 6 0.19
26 12 0.38
27 8 0.25
28 6 0.19
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (28 bp):
AATTTTATATTTTAATTAATATAAAAAT
Found at i:64082935 original size:26 final size:26
Alignment explanation
Indices: 64082870--64082935 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
64082860 ATTTTATTTA
* * * *
64082870 ATATATAATTAATTTTAATTTTAATT
1 ATATAAAAATAATTTTAATTTAAAAT
64082896 ATATAAAAAT-ATTTTATATTTAAAAT
1 ATATAAAAATAATTTTA-ATTTAAAAT
*
64082922 A-ATGAAAATAATTT
1 ATATAAAAATAATTT
64082936 AAAAGTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 13 0.39
26 20 0.61
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
ATATAAAAATAATTTTAATTTAAAAT
Found at i:64083087 original size:33 final size:33
Alignment explanation
Indices: 64083013--64083087 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
64083003 ATAGGAATAC
* * * * *
64083013 ATATCTTTGATTTATATACATACTTATATATAT
1 ATATCTATAATTTATATACACACCTATAGATAT
64083046 AT-TCCTATAATTTATATACACACCTATAGATAT
1 ATAT-CTATAATTTATATACACACCTATAGATAT
64083079 ATATCTATA
1 ATATCTATA
64083088 CACATTTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 1 0.03
33 33 0.94
34 1 0.03
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (33 bp):
ATATCTATAATTTATATACACACCTATAGATAT
Found at i:64083119 original size:24 final size:24
Alignment explanation
Indices: 64083091--64083137 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
64083081 ATCTATACAC
64083091 ATTTTTATTTTCACAAATACATAA
1 ATTTTTATTTTCACAAATACATAA
**
64083115 ATTTTTATTTTCATGAATACATA
1 ATTTTTATTTTCACAAATACATA
64083138 TATACTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (24 bp):
ATTTTTATTTTCACAAATACATAA
Found at i:64083146 original size:24 final size:24
Alignment explanation
Indices: 64083095--64083146 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
64083085 ATACACATTT
**
64083095 TTATTTTCACAAATACATAAATTT
1 TTATTTTCACAAATACATAAATAC
** *
64083119 TTATTTTCATGAATACATATATAC
1 TTATTTTCACAAATACATAAATAC
64083143 TTAT
1 TTAT
64083147 ATGTTTTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (24 bp):
TTATTTTCACAAATACATAAATAC
Found at i:64083669 original size:71 final size:71
Alignment explanation
Indices: 64083553--64083687 Score: 216
Period size: 71 Copynumber: 1.9 Consensus size: 71
64083543 TCTTTTCAAA
* * * * *
64083553 CTCAAGTTTTAACCGATCTTGGGAATTAAGAAGAGATCGTGTCCTAACTCACTGGGCATGATCCT
1 CTCAAGTTTTAAACGATCTCGGAAATTAAGAAAAGATCGTGTCCTAACTCACTAGGCATGATCCT
64083618 TTTTTC
66 TTTTTC
*
64083624 CTCAAGTTTTAAACGATCTCGGAAATTAAGAAAAGATCGTGTCCTAACTTACTAGGCATGATCC
1 CTCAAGTTTTAAACGATCTCGGAAATTAAGAAAAGATCGTGTCCTAACTCACTAGGCATGATCC
64083688 CCTTTTTTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (71 bp):
CTCAAGTTTTAAACGATCTCGGAAATTAAGAAAAGATCGTGTCCTAACTCACTAGGCATGATCCT
TTTTTC
Found at i:64084211 original size:14 final size:15
Alignment explanation
Indices: 64084192--64084221 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64084182 AGAGAAATTA
64084192 AATAAAA-AATTGAG
1 AATAAAATAATTGAG
64084206 AATAAAATAATTGAG
1 AATAAAATAATTGAG
64084221 A
1 A
64084222 GAATAGGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (15 bp):
AATAAAATAATTGAG
Found at i:64084588 original size:17 final size:17
Alignment explanation
Indices: 64084566--64084598 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64084556 TATAATTATC
64084566 ATAATT-TTTATTAAATT
1 ATAATTATTT-TTAAATT
64084583 ATAATTATTTTTAAAT
1 ATAATTATTTTTAAAT
64084599 GTCCATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATAATTATTTTTAAATT
Found at i:64089359 original size:2 final size:2
Alignment explanation
Indices: 64089352--64089424 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
64089342 AATATGTATA
64089352 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
64089394 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
64089425 CAAGAAGCAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:64098370 original size:21 final size:21
Alignment explanation
Indices: 64098346--64098386 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
64098336 GCGTGCGATT
*
64098346 TGTGCATCATGTTGACGTACG
1 TGTGCATCATGCTGACGTACG
64098367 TGTGCATCATGCTGACGTAC
1 TGTGCATCATGCTGACGTAC
64098387 AATGACCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.32
Consensus pattern (21 bp):
TGTGCATCATGCTGACGTACG
Found at i:64105445 original size:29 final size:30
Alignment explanation
Indices: 64105392--64105467 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
64105382 AAGAAAGAAA
* *
64105392 TTTAAAATTTAGTCTATATA-TTTTT-ATT
1 TTTAAAATTTAGTCCATATACTTTTTAAAT
* *
64105420 TTTAAAAATTTAGTCCCTTTACTTTTTAAAT
1 TTT-AAAATTTAGTCCATATACTTTTTAAAT
64105451 TTTAAAATTTAGGTCCA
1 TTTAAAATTTA-GTCCA
64105468 ACAGTTAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 3 0.08
29 14 0.36
30 13 0.33
31 9 0.23
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (30 bp):
TTTAAAATTTAGTCCATATACTTTTTAAAT
Found at i:64113181 original size:20 final size:20
Alignment explanation
Indices: 64113156--64113195 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
64113146 CGGTCCAAGC
*
64113156 TTGAACGTGAAACAACTGAA
1 TTGAACGTAAAACAACTGAA
64113176 TTGAACGTAAAACAACTGAA
1 TTGAACGTAAAACAACTGAA
64113196 ACCTGAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (20 bp):
TTGAACGTAAAACAACTGAA
Found at i:64129087 original size:16 final size:16
Alignment explanation
Indices: 64129066--64129098 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64129056 ACTATAGCTG
64129066 CTTAGATTGTAATGCT
1 CTTAGATTGTAATGCT
64129082 CTTAGATTGTAATGCT
1 CTTAGATTGTAATGCT
64129098 C
1 C
64129099 AGATGCAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (16 bp):
CTTAGATTGTAATGCT
Found at i:64133850 original size:30 final size:30
Alignment explanation
Indices: 64133814--64133874 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64133804 ATAATAAAAG
64133814 TTTAAATTGAGAACCCTAAAGGCATGCCCA
1 TTTAAATTGAGAACCCTAAAGGCATGCCCA
64133844 TTTAAATTGAGAACCCTAAAGGCATGCCCA
1 TTTAAATTGAGAACCCTAAAGGCATGCCCA
64133874 T
1 T
64133875 CACCGATAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (30 bp):
TTTAAATTGAGAACCCTAAAGGCATGCCCA
Found at i:64134504 original size:12 final size:12
Alignment explanation
Indices: 64134487--64134512 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64134477 GACTAACAAA
64134487 GAGAACAAGCAT
1 GAGAACAAGCAT
64134499 GAGAACAAGCAT
1 GAGAACAAGCAT
64134511 GA
1 GA
64134513 CCGTGCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.27, T:0.08
Consensus pattern (12 bp):
GAGAACAAGCAT
Found at i:64136066 original size:2 final size:2
Alignment explanation
Indices: 64136061--64136085 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64136051 AAAAACAAGT
64136061 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
64136086 AATTAGAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:64143055 original size:24 final size:24
Alignment explanation
Indices: 64143005--64143056 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
64142995 TTAGTAAGTC
* **
64143005 AAATAAATTATGCTAATAAATGTT
1 AAATAAATTATACTAATAAATACT
*
64143029 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
64143053 AAAT
1 AAAT
64143057 CTTCTGGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:64144437 original size:34 final size:35
Alignment explanation
Indices: 64144393--64144459 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
64144383 CAGTAAAATA
*
64144393 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
64144427 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
64144460 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:64146772 original size:30 final size:30
Alignment explanation
Indices: 64146738--64146802 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
64146728 AGTCTATATC
* *
64146738 TTTATAATTTTTA-AAGAATTAAATTAAAAT
1 TTTATAATTTTTAGAA-AACTAAAGTAAAAT
*
64146768 TTTATTATTTTTAGGAAAACTAAAGTAAAAT
1 TTTATAATTTTTA-GAAAACTAAAGTAAAAT
64146799 TTTA
1 TTTA
64146803 ACTTTACTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 12 0.40
31 16 0.53
32 2 0.07
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (30 bp):
TTTATAATTTTTAGAAAACTAAAGTAAAAT
Found at i:64154505 original size:38 final size:38
Alignment explanation
Indices: 64154447--64154527 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
64154437 AAATTTATTG
* *
64154447 TGAAATTATGTTATAGATAGGAAGTATAGGGTCCTTAA
1 TGAAATTATGTTACAAATAGGAAGTATAGGGTCCTTAA
64154485 TGAAATTATGTTACAAATAGGAAGTATAGGGTCCTTAA
1 TGAAATTATGTTACAAATAGGAAGTATAGGGTCCTTAA
64154523 TGAAA
1 TGAAA
64154528 GAATGTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (38 bp):
TGAAATTATGTTACAAATAGGAAGTATAGGGTCCTTAA
Found at i:64164001 original size:29 final size:30
Alignment explanation
Indices: 64163961--64164027 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 30
64163951 ACAGAAAAAC
64163961 TAGTTTACTCTTTGATCTAACACACATGAT
1 TAGTTTACTCTTTGATCTAACACACATGAT
**
64163991 TAGTTTA-TCTTTGATCTAACATTCATGAT
1 TAGTTTACTCTTTGATCTAACACACATGAT
*
64164020 TAATTTAC
1 TAGTTTAC
64164028 CTTATCCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 26 0.79
30 7 0.21
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (30 bp):
TAGTTTACTCTTTGATCTAACACACATGAT
Found at i:64171084 original size:41 final size:40
Alignment explanation
Indices: 64171039--64171140 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 40
64171029 TGATTCAGTA
64171039 CACCGGCACTTAGCCTGCTAGACATATAGTCTG-AGATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAG-TATTT
*
64171080 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAGTATTT
*
64171121 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
64171141 AGCGCTATGC
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
40 2 0.04
41 50 0.89
42 4 0.07
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAGTATTT
Found at i:64172825 original size:13 final size:13
Alignment explanation
Indices: 64172807--64172832 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64172797 CAATCAAATG
64172807 CACACAAAATAAT
1 CACACAAAATAAT
64172820 CACACAAAATAAT
1 CACACAAAATAAT
64172833 ATTAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
CACACAAAATAAT
Found at i:64174327 original size:26 final size:27
Alignment explanation
Indices: 64174298--64174356 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 27
64174288 CATTTAGAAA
64174298 ACGCCACACAA-GCAATC-ATAT-AGAGT
1 ACGCCACA-AAGGCAATCAAT-TCAGAGT
64174324 ACGCCACAAAGGCAATCAATTCAGAGT
1 ACGCCACAAAGGCAATCAATTCAGAGT
64174351 ACGCCA
1 ACGCCA
64174357 TGGACTTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.07
26 15 0.50
27 13 0.43
ACGTcount: A:0.41, C:0.29, G:0.17, T:0.14
Consensus pattern (27 bp):
ACGCCACAAAGGCAATCAATTCAGAGT
Found at i:64175716 original size:80 final size:80
Alignment explanation
Indices: 64175620--64175786 Score: 334
Period size: 80 Copynumber: 2.1 Consensus size: 80
64175610 CATACTTATC
64175620 AAAATTTTTCCTTTCATTAACACACACTTTGAAAATCTTATTAAGAAAATGTTATCAATCTGTTC
1 AAAATTTTTCCTTTCATTAACACACACTTTGAAAATCTTATTAAGAAAATGTTATCAATCTGTTC
64175685 CTTTGGACAAAATCA
66 CTTTGGACAAAATCA
64175700 AAAATTTTTCCTTTCATTAACACACACTTTGAAAATCTTATTAAGAAAATGTTATCAATCTGTTC
1 AAAATTTTTCCTTTCATTAACACACACTTTGAAAATCTTATTAAGAAAATGTTATCAATCTGTTC
64175765 CTTTGGACAAAATCA
66 CTTTGGACAAAATCA
64175780 AAAATTT
1 AAAATTT
64175787 GACGGTTACT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (80 bp):
AAAATTTTTCCTTTCATTAACACACACTTTGAAAATCTTATTAAGAAAATGTTATCAATCTGTTC
CTTTGGACAAAATCA
Found at i:64183565 original size:44 final size:46
Alignment explanation
Indices: 64183437--64183567 Score: 130
Period size: 44 Copynumber: 2.9 Consensus size: 46
64183427 ATAAAAGATT
* *
64183437 TAGTCAATGCCAAAAACCACACGCAAGGTTAAAGGCACTTGACAGA
1 TAGTCAATGCCAAAAAACACACACAAGGTTAAAGGCACTTGACAGA
* * ** *
64183483 -AGAT-AACG-CAAGGATAACACTTA-AAGGATAAAGGCACTT-A-AGA
1 TAG-TCAATGCCAA--AAAACACACACAAGGTTAAAGGCACTTGACAGA
64183526 TAGTCAATGCCAAAAAACACACACAAGGTTAAAGGCACTTGA
1 TAGTCAATGCCAAAAAACACACACAAGGTTAAAGGCACTTGA
64183568 GAGAGAGAGA
Statistics
Matches: 65, Mismatches: 12, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
43 11 0.17
44 24 0.37
45 24 0.37
46 6 0.09
ACGTcount: A:0.45, C:0.20, G:0.19, T:0.16
Consensus pattern (46 bp):
TAGTCAATGCCAAAAAACACACACAAGGTTAAAGGCACTTGACAGA
Found at i:64188017 original size:29 final size:29
Alignment explanation
Indices: 64187958--64188016 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
64187948 TTTGAACAAA
* *
64187958 TGTGCAATGTTATACATAAAATTTGATTT
1 TGTGCAATTTTATACATAAAATTTCATTT
* *
64187987 TGTGCAATTTTATACTTGAAATTTTCATTT
1 TGTGCAATTTTATACAT-AAAATTTCATTT
64188017 GATTCAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.49
Consensus pattern (29 bp):
TGTGCAATTTTATACATAAAATTTCATTT
Found at i:64197959 original size:13 final size:13
Alignment explanation
Indices: 64197943--64197972 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
64197933 ATTGTCATGT
64197943 AATTGTTTTTCTG
1 AATTGTTTTTCTG
64197956 AATTGTTTTTCTG
1 AATTGTTTTTCTG
64197969 AATT
1 AATT
64197973 TAGCTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
AATTGTTTTTCTG
Found at i:64199015 original size:157 final size:157
Alignment explanation
Indices: 64198851--64199160 Score: 521
Period size: 157 Copynumber: 2.0 Consensus size: 157
64198841 ATAAGAATAT
*
64198851 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* * * *
64198916 AAATATGATTAAATTATGTATTATTCATATTAATAATCTTATCAAAGTTTAAATAACAATAACAA
66 AAATATAATTAAAATATGTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
64198981 TAATAATTTACCAAAACAAATTTCTGG
131 TAATAATTTACCAAAACAAATTTCTGG
*
64199008 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* * *
64199073 AAATATAATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATAATTAAAATATGTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
* *
64199138 TAATTATTTACCAAAATAAATTT
131 TAATAATTTACCAAAACAAATTT
64199161 ATGCTAAGGG
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 142 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATAATTAAAATATGTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGG
Found at i:64199048 original size:18 final size:17
Alignment explanation
Indices: 64199020--64199054 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64199010 ATTATTAAGA
*
64199020 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64199037 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64199055 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64199315 original size:16 final size:16
Alignment explanation
Indices: 64199290--64199341 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
64199280 AATTTGCTAT
64199290 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64199306 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
64199322 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64199338 TACA
1 TACA
64199342 GCTAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64204158 original size:34 final size:33
Alignment explanation
Indices: 64204115--64204184 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
64204105 CTATACTAGT
64204115 ATACCCAAATATATTAACCA-AAAAATAGTGATAA
1 ATACCCAAATATATTAA--ATAAAAATAGTGATAA
* *
64204149 ATACCCAAATGTATTAAATTAAAATAGTGATAA
1 ATACCCAAATATATTAAATAAAAATAGTGATAA
64204182 ATA
1 ATA
64204185 ATTAAAGAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
32 1 0.03
33 16 0.48
34 16 0.48
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.27
Consensus pattern (33 bp):
ATACCCAAATATATTAAATAAAAATAGTGATAA
Found at i:64204335 original size:21 final size:21
Alignment explanation
Indices: 64204288--64204329 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
64204278 GTTGAACAGT
64204288 CGACAATGATAAAGGAATAAC
1 CGACAATGATAAAGGAATAAC
64204309 CGACAATGATAAAGGAATAAC
1 CGACAATGATAAAGGAATAAC
64204330 GAACAAGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.19, T:0.14
Consensus pattern (21 bp):
CGACAATGATAAAGGAATAAC
Found at i:64206278 original size:16 final size:17
Alignment explanation
Indices: 64206257--64206289 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64206247 GTGTGACCCC
64206257 TGTTTTC-AAATTTTTA
1 TGTTTTCAAAATTTTTA
64206273 TGTTTTCAAAATTTTTA
1 TGTTTTCAAAATTTTTA
64206290 ACTTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.61
Consensus pattern (17 bp):
TGTTTTCAAAATTTTTA
Found at i:64206296 original size:18 final size:18
Alignment explanation
Indices: 64206257--64206310 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 18
64206247 GTGTGACCCC
64206257 TGTTTTC-AAATTTTT-A
1 TGTTTTCAAAATTTTTAA
64206273 TGTTTTCAAAATTTTTAA
1 TGTTTTCAAAATTTTTAA
64206291 CT-TTTTCAAACTATTTTTAA
1 -TGTTTTCAAA--ATTTTTAA
64206311 GGTCCCGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.21
17 8 0.24
18 9 0.27
19 1 0.03
20 8 0.24
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (18 bp):
TGTTTTCAAAATTTTTAA
Found at i:64217212 original size:30 final size:26
Alignment explanation
Indices: 64217189--64217242 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
64217179 TTAAACATGA
64217189 ATAAAATAAATCTTATTGAATT-AAC
1 ATAAAATAAATCTTATTGAATTAAAC
64217214 ATAAAATAAATCTTATTGAATT-AAC
1 ATAAAATAAATCTTATTGAATTAAAC
64217239 ATAA
1 ATAA
64217243 TCATCCTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (26 bp):
ATAAAATAAATCTTATTGAATTAAAC
Found at i:64217797 original size:114 final size:114
Alignment explanation
Indices: 64217592--64217811 Score: 386
Period size: 114 Copynumber: 1.9 Consensus size: 114
64217582 TAAGGGATTG
* *
64217592 ATGCATGGTATTTATAAGTGAAGGTCAGGGGTAAAGTTTACTAAAAATAGATTTCAAATTCCTTC
1 ATGCATGGTATTTATAAGTGAAGGTAAGGGGTAAAGTTTACTAAAAATAAATTTCAAATTCCTTC
*
64217657 TTTTCCTATCATACATGGCCGGCCATATTTCAAGGAGAAGGAGATGACT
66 TTTTCCTATCATACATGGCCGACCATATTTCAAGGAGAAGGAGATGACT
* *
64217706 ATGCATGGTATTTATAAGTGAAGGTAAGGGGTGAAGTTTGCTAAAAATAAATTTCAAATTCCTTC
1 ATGCATGGTATTTATAAGTGAAGGTAAGGGGTAAAGTTTACTAAAAATAAATTTCAAATTCCTTC
*
64217771 TTTTCCTATCATACATGGCCGACCATATTTCAATGAGAAGG
66 TTTTCCTATCATACATGGCCGACCATATTTCAAGGAGAAGG
64217812 GGATAAATTA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (114 bp):
ATGCATGGTATTTATAAGTGAAGGTAAGGGGTAAAGTTTACTAAAAATAAATTTCAAATTCCTTC
TTTTCCTATCATACATGGCCGACCATATTTCAAGGAGAAGGAGATGACT
Found at i:64218503 original size:21 final size:21
Alignment explanation
Indices: 64218473--64218532 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
64218463 TTAAGTGTTG
64218473 AATGTCGCGACTTTAGCTTCC
1 AATGTCGCGACTTTAGCTTCC
* **
64218494 AATGTTGCGACTCTTAGCTTTT
1 AATGTCGCGACT-TTAGCTTCC
*
64218516 AATGTCGCGACCTTAGC
1 AATGTCGCGACTTTAGC
64218533 GAAAATTTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 16 0.48
22 17 0.52
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (21 bp):
AATGTCGCGACTTTAGCTTCC
Found at i:64218513 original size:22 final size:22
Alignment explanation
Indices: 64218473--64218532 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
64218463 TTAAGTGTTG
64218473 AATGTCGCGACT-TTAGCTTCC
1 AATGTCGCGACTCTTAGCTTCC
* **
64218494 AATGTTGCGACTCTTAGCTTTT
1 AATGTCGCGACTCTTAGCTTCC
64218516 AATGTCGCGAC-CTTAGC
1 AATGTCGCGACTCTTAGC
64218533 GAAAATTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (22 bp):
AATGTCGCGACTCTTAGCTTCC
Found at i:64221433 original size:6 final size:6
Alignment explanation
Indices: 64221424--64221456 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
64221414 AGCCGTTGGT
64221424 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAG
1 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAG
64221457 TGCCATTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.48, T:0.00
Consensus pattern (6 bp):
CAGAGG
Found at i:64225090 original size:16 final size:16
Alignment explanation
Indices: 64225068--64225136 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
64225058 TTTGGTTCGC
64225068 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
64225084 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
64225100 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
64225117 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
64225133 TGTA
1 TGTA
64225137 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:64225114 original size:33 final size:32
Alignment explanation
Indices: 64225068--64225136 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
64225058 TTTGGTTCGC
64225068 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
64225100 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
64225133 TGTA
1 TGTA
64225137 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:64225201 original size:44 final size:45
Alignment explanation
Indices: 64225117--64225207 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
64225107 GGATTAGAGG
* * *
64225117 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
64225162 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
64225206 TG
1 TG
64225208 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:64225393 original size:18 final size:17
Alignment explanation
Indices: 64225372--64225406 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64225362 TTATTATTAA
*
64225372 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
64225390 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
64225407 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:64225870 original size:120 final size:120
Alignment explanation
Indices: 64225355--64226099 Score: 1305
Period size: 120 Copynumber: 6.2 Consensus size: 120
64225345 ATCATATTTA
*
64225355 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
*
64225420 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
** *
64225475 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAA-T-AATT
*
64225539 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
** *
64225596 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAA-T-AATT
*
64225660 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
64225717 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
64225782 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
64225837 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
*
64225902 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
64225957 AACATAATTATTATTAAATGTATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
64226022 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
64226077 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
64226100 AACTTGAAAA
Statistics
Matches: 611, Mismatches: 11, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
119 1 0.00
120 374 0.61
121 235 0.38
122 1 0.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:64229158 original size:33 final size:33
Alignment explanation
Indices: 64229119--64229194 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
64229109 ATTATAAAGC
*
64229119 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
64229152 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
64229185 ATGTATAATT
1 ATGTATAATT
64229195 CAAGTTTTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:64229270 original size:37 final size:37
Alignment explanation
Indices: 64229229--64229310 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
64229219 TTTGTTAAGT
* * *
64229229 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAGC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
*
64229266 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
64229303 ATTGATTA
1 ATTGATTA
64229311 ATAAATATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (37 bp):
ATTGATTAGTTCAATAAAGCATGTTCAAAGTTTGAAC
Found at i:64241620 original size:4 final size:4
Alignment explanation
Indices: 64241606--64241635 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
64241596 TGCAGCAAAG
64241606 TTTA TTTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA T
64241636 GGGGTTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:64249495 original size:5 final size:5
Alignment explanation
Indices: 64249485--64249509 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
64249475 CACCAAAATT
64249485 TTAAA TTAAA TTAAA TTAAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA
64249510 AATGATATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TTAAA
Found at i:64256345 original size:53 final size:53
Alignment explanation
Indices: 64256265--64256371 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
64256255 GCTCCCGAAG
64256265 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
1 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
64256318 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
1 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
64256371 T
1 T
64256372 GAGTCACCTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (53 bp):
TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
Found at i:64257859 original size:23 final size:23
Alignment explanation
Indices: 64257829--64257880 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
64257819 GGATTAAGAG
64257829 AGGCTATAAAGTAAACTTCTTCA
1 AGGCTATAAAGTAAACTTCTTCA
64257852 AGGCTATAAAGTAAACTTCTTCA
1 AGGCTATAAAGTAAACTTCTTCA
64257875 AGGCTA
1 AGGCTA
64257881 CCAGACTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (23 bp):
AGGCTATAAAGTAAACTTCTTCA
Found at i:64263170 original size:26 final size:23
Alignment explanation
Indices: 64263112--64263163 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
64263102 GTAAGTCTGG
64263112 TAGCCTTGAAGAAGTTTACTTTA
1 TAGCCTTGAAGAAGTTTACTTTA
64263135 TAGCCTTGAAGAAGTTTACTTTA
1 TAGCCTTGAAGAAGTTTACTTTA
64263158 TAGCCT
1 TAGCCT
64263164 CTCTGAATCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (23 bp):
TAGCCTTGAAGAAGTTTACTTTA
Found at i:64273000 original size:53 final size:53
Alignment explanation
Indices: 64272920--64273026 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
64272910 GCTCCCGAAG
64272920 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
1 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
64272973 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
1 TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
64273026 T
1 T
64273027 GAGTCACCTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (53 bp):
TATTTTGGTCCTTTTAAGCTCTTAAACAAGATAGGAACAATGGCCTATTAGCT
Found at i:64274514 original size:23 final size:23
Alignment explanation
Indices: 64274484--64274535 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
64274474 GGATTAAGAG
64274484 AGGCTATAAAGTAAACTTCTTCA
1 AGGCTATAAAGTAAACTTCTTCA
64274507 AGGCTATAAAGTAAACTTCTTCA
1 AGGCTATAAAGTAAACTTCTTCA
64274530 AGGCTA
1 AGGCTA
64274536 CCAGACTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (23 bp):
AGGCTATAAAGTAAACTTCTTCA
Found at i:64279753 original size:22 final size:22
Alignment explanation
Indices: 64279728--64279773 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
64279718 GTCTGGTAGC
64279728 CTTGAAGAAGTTTACTTTATAG
1 CTTGAAGAAGTTTACTTTATAG
64279750 CTTGAAGAAGTTTACTTTATAG
1 CTTGAAGAAGTTTACTTTATAG
64279772 CT
1 CT
64279774 CTCTGATCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (22 bp):
CTTGAAGAAGTTTACTTTATAG
Found at i:64305383 original size:150 final size:150
Alignment explanation
Indices: 64305154--64305597 Score: 778
Period size: 150 Copynumber: 3.0 Consensus size: 150
64305144 AGATGATGGG
* *
64305154 TTTCTGTTACTCAGTGTTAGCCTTGTATATTTACGAGATTTTCTCTCTCTAATGTGTGGCTTCTT
1 TTTCTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCTCTCTCTAATGTGTGGCGTCTT
* *
64305219 TTATGTCTCAGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
66 TTATGCCTCGGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
64305284 GTTTAGGAATTTGAATGAAA
131 GTTTAGGAATTTGAATGAAA
64305304 TTTCTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCTCTCTCTAATGTGTGGCGTCTT
1 TTTCTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCTCTCTCTAATGTGTGGCGTCTT
64305369 TTATGCCTCGGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
66 TTATGCCTCGGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
64305434 GTTTAGGAATTTGAATGAAA
131 GTTTAGGAATTTGAATGAAA
* *
64305454 TTTTTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCACTCTCTAATGTGTGGCGTCTT
1 TTTCTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCTCTCTCTAATGTGTGGCGTCTT
64305519 TTATGCCTCGGTTTGAGGCGTGACATGAATA--C------TCTTTTACTTTTCCTATACTAACAT
66 TTATGCCTCGGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
64305576 GTTTAGGAATTTGAATGAAA
131 GTTTAGGAATTTGAATGAAA
64305596 TT
1 TT
64305598 GTGTAATAAA
Statistics
Matches: 288, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
142 47 0.16
148 1 0.00
150 240 0.83
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (150 bp):
TTTCTGTTACTCAGTGTTAGCCTTGTATATTTGCGAGATTTTCTCTCTCTAATGTGTGGCGTCTT
TTATGCCTCGGTTTGAGGCGTGACATGAATACTCGTGGATTCTTTTACTTTTCCTATACTAACAT
GTTTAGGAATTTGAATGAAA
Found at i:64306482 original size:3 final size:3
Alignment explanation
Indices: 64306474--64306502 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
64306464 TACGTTCCTT
64306474 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64306503 GTTTTTTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64309588 original size:78 final size:78
Alignment explanation
Indices: 64309459--64309609 Score: 248
Period size: 78 Copynumber: 1.9 Consensus size: 78
64309449 CTCATATTCT
* * *
64309459 ACCATTAAACCATGATCCCTTGATCTTACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
64309524 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * *
64309537 ACCATTAAACCATGATCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
64309602 ACCATGGA
66 ACCATGGA
64309610 CTTTGTGTAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (78 bp):
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Found at i:64312562 original size:9 final size:9
Alignment explanation
Indices: 64312550--64312575 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
64312540 AAAATTTTGC
64312550 TTTGTTCTT
1 TTTGTTCTT
64312559 TTTGTTCTT
1 TTTGTTCTT
64312568 TTTGTTCT
1 TTTGTTCT
64312576 GGGCCTGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.77
Consensus pattern (9 bp):
TTTGTTCTT
Found at i:64318435 original size:19 final size:17
Alignment explanation
Indices: 64318394--64318436 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
64318384 AAAGTGAGTG
64318394 TTTGATGGGTGATGGGGA
1 TTTGA-GGGTGATGGGGA
*
64318412 GTTGAGGGTGATGTGGGTA
1 TTTGAGGGTGATG-GGG-A
64318431 TTTGAG
1 TTTGAG
64318437 CACCAGAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 7 0.33
19 6 0.29
ACGTcount: A:0.16, C:0.00, G:0.49, T:0.35
Consensus pattern (17 bp):
TTTGAGGGTGATGGGGA
Found at i:64319738 original size:17 final size:18
Alignment explanation
Indices: 64319716--64319749 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
64319706 CGACCACGAC
64319716 AAACGCGA-CGCGACCGA
1 AAACGCGACCGCGACCGA
64319733 AAACGCGACCGCGACCG
1 AAACGCGACCGCGACCG
64319750 TAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.38, G:0.29, T:0.00
Consensus pattern (18 bp):
AAACGCGACCGCGACCGA
Found at i:64321210 original size:29 final size:29
Alignment explanation
Indices: 64321119--64321210 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
64321109 CAAATAATAA
* *
64321119 TATATAATTGTTATAACTAATGTATATTT
1 TATATATTTGTTATAATTAATGTATATTT
* *
64321148 TATACATTTGGTATAATTAATGTATATTT
1 TATATATTTGTTATAATTAATGTATATTT
* *
64321177 TATATATTTGTTTTAATTAATGCATATTT
1 TATATATTTGTTATAATTAATGTATATTT
64321206 TATAT
1 TATAT
64321211 TAACAAATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.54
Consensus pattern (29 bp):
TATATATTTGTTATAATTAATGTATATTT
Found at i:64322214 original size:16 final size:16
Alignment explanation
Indices: 64322195--64322229 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
64322185 TAGTAATTTT
64322195 AATGTTAAAG-GACTAA
1 AATGTTAAAGTGA-TAA
64322211 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
64322227 AAT
1 AAT
64322230 TACGAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:64326265 original size:18 final size:16
Alignment explanation
Indices: 64326223--64326252 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64326213 AGTTACTATG
64326223 TTTGTA-TTTTTTTGA
1 TTTGTATTTTTTTTGA
64326238 TTTGTATTTTTTTTG
1 TTTGTATTTTTTTTG
64326253 TTATTGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (16 bp):
TTTGTATTTTTTTTGA
Found at i:64327107 original size:25 final size:25
Alignment explanation
Indices: 64327078--64327129 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
64327068 AATAAACACC
64327078 AAAAATTTATTTTAAAAATAAAAAAT
1 AAAAATTTATTTT-AAAATAAAAAAT
**
64327104 AAAAAAATATTTTAAAATAAAAAAT
1 AAAAATTTATTTTAAAATAAAAAAT
64327129 A
1 A
64327130 TATTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAATTTATTTTAAAATAAAAAAT
Found at i:64327122 original size:18 final size:19
Alignment explanation
Indices: 64327099--64327134 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
64327089 TTAAAAATAA
64327099 AAAATAAAAAA-ATATTTT
1 AAAATAAAAAATATATTTT
64327117 AAAATAAAAAATATATTT
1 AAAATAAAAAATATATTT
64327135 ATTATATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATAAAAAATATATTTT
Found at i:64327127 original size:17 final size:19
Alignment explanation
Indices: 64327099--64327135 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
64327089 TTAAAAATAA
64327099 AAAATAAAAAAATAT-TTT
1 AAAATAAAAAAATATATTT
64327117 AAAAT-AAAAAATATATTT
1 AAAATAAAAAAATATATTT
64327135 A
1 A
64327136 TTATATTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATAAAAAAATATATTT
Found at i:64330155 original size:6 final size:6
Alignment explanation
Indices: 64330146--64330179 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
64330136 ATTTCTTTTC
* *
64330146 CTTTGT CTTTGT CTTTGT TTTTGT TTTTGT CTTT
1 CTTTGT CTTTGT CTTTGT CTTTGT CTTTGT CTTT
64330180 TGCCTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.74
Consensus pattern (6 bp):
CTTTGT
Found at i:64332823 original size:19 final size:19
Alignment explanation
Indices: 64332799--64332836 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
64332789 CAATTGTTTT
64332799 AAAATTAA-ATAAGTTTAAA
1 AAAATTAATATAA-TTTAAA
64332818 AAAATTAATATAATTTAAA
1 AAAATTAATATAATTTAAA
64332837 TTTTTAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAATTAATATAATTTAAA
Found at i:64335346 original size:231 final size:229
Alignment explanation
Indices: 64334942--64335467 Score: 736
Period size: 231 Copynumber: 2.3 Consensus size: 229
64334932 TAGCAGAATA
*
64334942 ATTTTTGTAATATCCGCTGAGCAGAATACTTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTTT
1 ATTTTTGTAATATTCGCTGAGCAGAATACTTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTTT
* **
64335007 TCTTGTTTTTGCTTAGCAGAGTAATTTTGGGGTTTGGTATTTTTGAGCCTGAATCACGATTAGAT
66 TCTTGTTTTTGCTTAGCAGAATAATTTTGGGGTTTGGTATTTTTGAGCCCAAATCACGATTAGAT
* * * *
64335072 TTCGGCTTTTCATTTATATTTTTGTCATTATATTTACTTTTCCAATTAACATGACGCTAGTTCCA
131 TTCGGCTTATCATTTATATTTTTGTCATTATATTCACTTTTCCAAATAACATGACACTAGTTCCA
* *
64335137 TTGCTCCCA-AGACTGAAGAAAATATCTATTATTAAG
196 TTGCTCCCAGA-ACTCAAGAAAATATCT-GTA-TAAG
*
64335173 ATTTTTGTAATATTCGCTGAGCAGAATAATTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTTT
1 ATTTTTGTAATATTCGCTGAGCAGAATACTTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTTT
* * * * *
64335238 TCTTGTTTTTGCTTAGTAGAATAATTTTGTGGTTTGGTTTTTTTGGGCCCAAATCACGCTTAGAA
66 TCTTGTTTTTGCTTAGCAGAATAATTTTGGGGTTTGGTATTTTTGAGCCCAAATCACGATTAG-A
*
64335303 TTT-GGCTTATCATTTATATTTTTGTCATTATAGTTCA-TTTTCCAAATAACATTACACTAGTTC
130 TTTCGGCTTATCATTTATATTTTTGTCATTATA-TTCACTTTTCCAAATAACATGACACTAGTTC
* * * * *
64335366 CTTTGCTCTCAGAACTCAGGATAATATCTGTATAAT
194 CATTGCTCCCAGAACTCAAGAAAATATCTGTATAAG
* * * *
64335402 ATTTTTGTAAT-TTCTGCTTAGCAGAATACTATTCCTCTCTGTTTTTAGTTGACATATGCTTCTT
1 ATTTTTGTAATATTC-GCTGAGCAGAATACTTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTT
64335466 TT
65 TT
64335468 TGCTAATATG
Statistics
Matches: 264, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
228 3 0.01
229 60 0.23
230 2 0.01
231 191 0.72
232 8 0.03
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.47
Consensus pattern (229 bp):
ATTTTTGTAATATTCGCTGAGCAGAATACTTTTCCTCTCTGTTTTTAGTTGATATATTCTTCTTT
TCTTGTTTTTGCTTAGCAGAATAATTTTGGGGTTTGGTATTTTTGAGCCCAAATCACGATTAGAT
TTCGGCTTATCATTTATATTTTTGTCATTATATTCACTTTTCCAAATAACATGACACTAGTTCCA
TTGCTCCCAGAACTCAAGAAAATATCTGTATAAG
Found at i:64338313 original size:267 final size:265
Alignment explanation
Indices: 64337840--64338372 Score: 994
Period size: 267 Copynumber: 2.0 Consensus size: 265
64337830 TTCTCAGTGG
64337840 TATTTGTTGATGTTTGCAGATCAGATCTCCAGTATCTTTTGGTTATTACATTCAGACCTTATGAG
1 TATTTGTTGATGTTTGCAGATCAGATCTCCAGTATCTTTTGGTTATTACATTCAGACCTTATGAG
* *
64337905 GCTAGGGTTACAGCTGTAAAGAGAATCCACGAAGTACGAGAAGGGAGGAAGAGAGAATAATGAAA
66 GCTAGGGTTACAACTGTAAAGAGAATCCACGAAGTACGAGAAGGGAGGAAGAGAGAATAAAGAAA
64337970 ACAAACCCCTGCTTCATGGGAGTCATTTCAGGTATGAATATTTACATTAACTGTGTATTTGCCTT
131 ACAAACCCCTGCTTCATGGGAGTCATTTCAGGTATGAATATTTACATTAACTGTGTATTTGCCTT
*
64338035 TTCATGTATTTTTTTAATTTCAGATCTCTGCTTCTCTCCTTTGTTTTTTCTCTTGGTTTTTGGTT
196 ATCATGTATTTTTTTAATTTCAGATCTCTGCTTCTCTCCTTTGTTTTTTCTCTTGGTTTTTGGTT
64338100 TTTCA
261 TTTCA
*
64338105 TATTTGTTGATGTTTGCAGATCAGATTTCCAGTATCTTTTGGTTATTACATTCAGACCTTTATGA
1 TATTTGTTGATGTTTGCAGATCAGATCTCCAGTATCTTTTGGTTATTACATTCAGACC-TTATGA
64338170 GGCTAGGGTTACAACTGTAAAGAGAATCCACGAAGTACGAGAAGGGAGGAAGAGAGAATAAAAGA
65 GGCTAGGGTTACAACTGTAAAGAGAATCCACGAAGTACGAGAAGGGAGGAAGAGAGAAT-AAAGA
*
64338235 AAACAAACCCTTGCTTCATGGGAGTCATTTCAGGTATGAATATTTACATTAACTGTGTATTTGCC
129 AAACAAACCCCTGCTTCATGGGAGTCATTTCAGGTATGAATATTTACATTAACTGTGTATTTGCC
*
64338300 TTATCATGTATTTTTTTAATTTCAGATCTCTGCTTCTCTCCTTTGTTTTTTCTGTTGGTTTTTGG
194 TTATCATGTATTTTTTTAATTTCAGATCTCTGCTTCTCTCCTTTGTTTTTTCTCTTGGTTTTTGG
64338365 TTTTTCA
259 TTTTTCA
64338372 T
1 T
64338373 CTTTAGAATA
Statistics
Matches: 260, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
265 57 0.22
266 64 0.25
267 139 0.53
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (265 bp):
TATTTGTTGATGTTTGCAGATCAGATCTCCAGTATCTTTTGGTTATTACATTCAGACCTTATGAG
GCTAGGGTTACAACTGTAAAGAGAATCCACGAAGTACGAGAAGGGAGGAAGAGAGAATAAAGAAA
ACAAACCCCTGCTTCATGGGAGTCATTTCAGGTATGAATATTTACATTAACTGTGTATTTGCCTT
ATCATGTATTTTTTTAATTTCAGATCTCTGCTTCTCTCCTTTGTTTTTTCTCTTGGTTTTTGGTT
TTTCA
Found at i:64341827 original size:61 final size:61
Alignment explanation
Indices: 64341732--64341854 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
64341722 CTCAAGATAT
*
64341732 TAGAAAATAAGGCAGGTAAAGAAATTAAGGCTGCTTGGGGGCATCTAATGTATCATCATTC
1 TAGAAAATAAGGCAAGTAAAGAAATTAAGGCTGCTTGGGGGCATCTAATGTATCATCATTC
64341793 TAGAAAATAAGGCAAGTAAAGAAATTAAGGCTGCTTGGGGGCATCTAATGTATCATCATTC
1 TAGAAAATAAGGCAAGTAAAGAAATTAAGGCTGCTTGGGGGCATCTAATGTATCATCATTC
64341854 T
1 T
64341855 TCAGCAGCTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (61 bp):
TAGAAAATAAGGCAAGTAAAGAAATTAAGGCTGCTTGGGGGCATCTAATGTATCATCATTC
Found at i:64342934 original size:20 final size:20
Alignment explanation
Indices: 64342911--64342961 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
64342901 TTCATATTAT
64342911 ATATTAACATAACATAA-AAA
1 ATATTAACATAACA-AATAAA
* *
64342931 ATATAAACCTAACAAATTAAA
1 ATATTAACATAACAAA-TAAA
64342952 ATATT-ACATA
1 ATATTAACATA
64342962 TATTTGAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 16 0.64
21 7 0.28
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (20 bp):
ATATTAACATAACAAATAAA
Found at i:64348312 original size:6 final size:6
Alignment explanation
Indices: 64348301--64348325 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
64348291 GATACTATGA
64348301 TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
64348326 CAAACTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:64355029 original size:22 final size:22
Alignment explanation
Indices: 64354997--64355038 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
64354987 AATATTTTTA
64354997 TTTTTTTAA-TTTTAAAATACT
1 TTTTTTTAATTTTTAAAATACT
64355018 TTTTTTTAAATTTTTAAAATA
1 TTTTTTT-AATTTTTAAAATA
64355039 AATTTTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 10 0.53
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTTTAATTTTTAAAATACT
Found at i:64355044 original size:22 final size:22
Alignment explanation
Indices: 64354996--64355045 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
64354986 AAATATTTTT
* *
64354996 ATTTTTTTAATTTTAAAATACT
1 ATTTTTTAAATTTTAAAATACA
*
64355018 TTTTTTTAAATTTTTAAAATA-A
1 ATTTTTTAAA-TTTTAAAATACA
64355040 ATTTTT
1 ATTTTT
64355046 GGTATTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTTTTAAATTTTAAAATACA
Found at i:64355044 original size:23 final size:21
Alignment explanation
Indices: 64354996--64355045 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
64354986 AAATATTTTT
*
64354996 ATTTTTTTAATTTTAAAATAC
1 ATTTTTTTAATTTTAAAATAA
*
64355017 TTTTTTTTAAATTTTTAAAATAA
1 ATTTTTTT-AA-TTTTAAAATAA
64355040 ATTTTT
1 ATTTTT
64355046 GGTATTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 7 0.29
22 2 0.08
23 15 0.62
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTTTAATTTTAAAATAA
Found at i:64355287 original size:14 final size:15
Alignment explanation
Indices: 64355261--64355293 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
64355251 CCTAAACCTA
*
64355261 TAAATCTTTAAACCC
1 TAAATCTTTAAACAC
64355276 TAAATC-TTAAACAC
1 TAAATCTTTAAACAC
64355290 TAAA
1 TAAA
64355294 CCCTGCTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATCTTTAAACAC
Found at i:64356100 original size:9 final size:9
Alignment explanation
Indices: 64356073--64356186 Score: 63
Period size: 9 Copynumber: 11.9 Consensus size: 9
64356063 AATACTTTTT
64356073 TTATAAAAATA
1 TTAT-AAAA-A
*
64356084 TTAGAAAAA
1 TTATAAAAA
64356093 TTATAAAAA
1 TTATAAAAA
64356102 -TA-AAAATA
1 TTATAAAA-A
64356110 TTAATATTAAAAA
1 -T--TA-TAAAAA
* *
64356123 TGATATAAAC
1 TTATA-AAAA
*
64356133 TTAAAAAAA
1 TTATAAAAA
64356142 TTATAAAAA
1 TTATAAAAA
*
64356151 CTTATAAATA
1 -TTATAAAAA
64356161 TTATAAAAA
1 TTATAAAAA
*
64356170 TCTA-ATAAA
1 T-TATAAAAA
64356179 TTATAAAA
1 TTATAAAA
64356187 TTAACAAAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
7 4 0.05
8 5 0.06
9 39 0.49
10 21 0.26
11 3 0.04
12 3 0.04
13 1 0.01
14 4 0.05
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:64356142 original size:19 final size:19
Alignment explanation
Indices: 64356118--64356169 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
64356108 TATTAATATT
*
64356118 AAAAATGATATAAACTTAA
1 AAAAATGATAAAAACTTAA
* *
64356137 AAAAATTATAAAAACTTAT
1 AAAAATGATAAAAACTTAA
* *
64356156 AAATATTATAAAAA
1 AAAAATGATAAAAA
64356170 TCTAATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATGATAAAAACTTAA
Found at i:64358868 original size:15 final size:15
Alignment explanation
Indices: 64358850--64358884 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
64358840 ACTTTGAAAT
*
64358850 CCTAAAACCTTAATC
1 CCTAAAACCATAATC
64358865 CCT-AAACCATAATC
1 CCTAAAACCATAATC
64358879 CCTAAA
1 CCTAAA
64358885 CTCTGCTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (15 bp):
CCTAAAACCATAATC
Found at i:64358871 original size:14 final size:14
Alignment explanation
Indices: 64358854--64358885 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
64358844 TGAAATCCTA
*
64358854 AAACCTTAATCCCT
1 AAACCATAATCCCT
64358868 AAACCATAATCCCT
1 AAACCATAATCCCT
64358882 AAAC
1 AAAC
64358886 TCTGCTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCATAATCCCT
Found at i:64367316 original size:9 final size:9
Alignment explanation
Indices: 64367298--64367349 Score: 56
Period size: 8 Copynumber: 6.1 Consensus size: 9
64367288 GGGTTCGAGG
64367298 TTTAGGGTT
1 TTTAGGGTT
*
64367307 TTT-GGGGT
1 TTTAGGGTT
*
64367315 TTTAAGG-T
1 TTTAGGGTT
*
64367323 TTTGGGGTT
1 TTTAGGGTT
64367332 TTTAGGG-T
1 TTTAGGGTT
64367340 TTTAGGGTT
1 TTTAGGGTT
64367349 T
1 T
64367350 AGGGTTTAGG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
8 21 0.60
9 14 0.40
ACGTcount: A:0.10, C:0.00, G:0.37, T:0.54
Consensus pattern (9 bp):
TTTAGGGTT
Found at i:64367325 original size:16 final size:16
Alignment explanation
Indices: 64367306--64367349 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
64367296 GGTTTAGGGT
64367306 TTTTGGGGTTTTAAGG
1 TTTTGGGGTTTTAAGG
*
64367322 TTTTGGGGTTTTTAGGG
1 TTTTGGGG-TTTTAAGG
*
64367339 TTTTAGGGTTT
1 TTTTGGGGTTT
64367350 AGGGTTTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.09, C:0.00, G:0.36, T:0.55
Consensus pattern (16 bp):
TTTTGGGGTTTTAAGG
Found at i:64367332 original size:25 final size:25
Alignment explanation
Indices: 64367302--64367349 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
64367292 TCGAGGTTTA
*
64367302 GGGTTTTTGGGGTTTTAAGGTTTTG
1 GGGTTTTTAGGGTTTTAAGGTTTTG
*
64367327 GGGTTTTTAGGGTTTTAGGGTTT
1 GGGTTTTTAGGGTTTTAAGGTTT
64367350 AGGGTTTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52
Consensus pattern (25 bp):
GGGTTTTTAGGGTTTTAAGGTTTTG
Found at i:64367489 original size:23 final size:24
Alignment explanation
Indices: 64367459--64367505 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
64367449 GGGTTTAGGG
64367459 TTTAGGGTCTAGGGTTTAG-GTTT
1 TTTAGGGTCTAGGGTTTAGAGTTT
* *
64367482 TTTAGGGTTTGGGGTTTAGAGTTT
1 TTTAGGGTCTAGGGTTTAGAGTTT
64367506 GGGGTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.13, C:0.02, G:0.36, T:0.49
Consensus pattern (24 bp):
TTTAGGGTCTAGGGTTTAGAGTTT
Found at i:64367533 original size:80 final size:78
Alignment explanation
Indices: 64367340--64368377 Score: 532
Period size: 80 Copynumber: 13.2 Consensus size: 78
64367330 TTTTTAGGGT
* * * *
64367340 TTTAGGGTTTAGGG-TTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTGGGGTTCAGGGTTCAGGGT
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGGTTTAGGTT
64367404 TTA-GGTTTGGGG
66 TTAGGGTTTGGGG
* * * *
64367416 TTTGGGGTTTGGGGTTTTAGGGTTT-GGGACTTGGGGTTTAGGGTTTAGGG-TCTAGGGTTTAGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGG-TTTAGGGTTCAGGGTTTAGGGTTC-AGGGTTTAGG
64367479 TTTTTTAGGGTTTGGGG
64 --TTTTAGGGTTTGGGG
* ** *
64367496 TTTAGAGTTTGGGGTTTTAAAGTTTAGGGTTTAGGGTTCAGGGTTCAGGGTTCAGGGTTTAGGGT
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGGTTTA-GGT
*
64367561 TTTAGGGTTTAGGGT
65 TTTAGGGTTT-GGGG
* ** * * * * *
64367576 TTTAGGGTTTAGGGTTTTAGGGTTTAGGGTTTAGGGTTTGGGGTTTGGGGCTT-GGGGCTTGGGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGG-TTCAGGGTTTAGGT
* * *
64367640 CTTGGGGCTTGGGG
65 TTTAGGGTTTGGGG
* * * * * ** * **
64367654 CTTGGGGCTTGGGGCTTGGGGCTT-GGGGTT-GGGTTTGGGGTTTGGGGTTTGGGGTTTGGGGTT
1 TTTAGGGTTTGGGG-TT-----TTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGGTT
* *
64367717 T-GGGTTTAGGGCTTGGGG
60 TAGGTTTTAGGGTTTGGGG
* * * * * * * * * * * * * *
64367735 CTTGGGGCTTGGGG-CTTGGGGCTTGGGGCTTGGGGCTT-GGGGCTTGGGGCTT-GGGGCTTAGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGG-TTCAGGGTTTAGGG-TTCAGGGTTTA-G
* *
64367797 GTTTTGGGGCTTGGGG
63 GTTTTAGGGTTTGGGG
* * ** * * * * * * *
64367813 TTTTGGGGCTTGGGGTTTGGGGGCTTGGGGTTTGGGGGCTT-GGGGTTTGGGGCTT-GGGGTTTG
1 -TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTT-AGGG-TTCAGGGTTTAGGG-TTCAGGGTTTA
** *
64367876 GGGCTTGGGGTTTGGGG
62 GGTTTTAGGGTTTGGGG
* * * * * ** * *
64367893 TTTGGGGTTTGGGG-TTTGGGGTTTGGGGTTGTAGGGTTTAGGGTTTGGGGTTTGGGGTTTGGGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTT-TAGGGTTCAGGGTTTAGGGTTCAGGGTTTAGGT
*
64367957 TTTGGGGTTTGGGG
65 TTTAGGGTTTGGGG
* * * * ** * ** *
64367971 TTTGGGGTTTGGGG-TTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTTAGGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGG-TTTAGGT
*
64368035 TTTAGGGTTTAGGG
65 TTTAGGGTTTGGGG
* * *
64368049 TTTAGGGTTTAGGG-TTTAGGGTTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTATGG
1 TTTAGGGTTTGGGGTTTTAGGG-TTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGGTTTA-GG
64368113 -TTTAGGGTTTGGGG
64 TTTTAGGGTTTGGGG
* * * * ** * *
64368127 TTCAGGGTTTAGGG-TTT-GGGATTAGGGTTTGGGGTTTGGGGTTTTAGGGTT-TGGGATTTGGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGG-TTTAGGGTTCAGGG-TTTAGG
* *
64368189 GTTTAGGGTTTAGGG
64 TTTTAGGGTTTGGGG
* ** * * ** ** *
64368204 TCTAGGGTTTAGGTTTTTTAGGGTTTGGGGTTTAGAGTTTGGGGTTTTAAAGTTTAGGGTTTAGG
1 TTTAGGGTTT-GGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGG-TTTAGGGTTCAGGGTTTAGG
* ***
64368269 GTTTAGGGTTCAAGG
64 TTTTAGGGTTTGGGG
* ** * * * *
64368284 TTCAGGGTTCAGGGTTTTAGGGTTTAGGGTTTTAGGGTTTAGGGTTTTAAGGTTTAGGATTTAGG
1 TTTAGGGTTTGGGGTTTTAGGGTTTAGGG-TTTAGGGTTCAGGG-TTTAGGGTTCAGGGTTTAGG
* *
64368349 GTTTGGGGTTTGGGG
64 TTTTAGGGTTTGGGG
* * *
64368364 CTTGGGGCTTGGGG
1 TTTAGGGTTTGGGG
64368378 CTTGGGGCTT
Statistics
Matches: 799, Mismatches: 122, Indels: 78
0.80 0.12 0.08
Matches are distributed among these distances:
74 2 0.00
75 5 0.01
76 65 0.08
77 104 0.13
78 179 0.22
79 103 0.13
80 236 0.30
81 69 0.09
82 29 0.04
83 5 0.01
84 2 0.00
ACGTcount: A:0.08, C:0.04, G:0.48, T:0.40
Consensus pattern (78 bp):
TTTAGGGTTTGGGGTTTTAGGGTTTAGGGTTTAGGGTTCAGGGTTTAGGGTTCAGGGTTTAGGTT
TTAGGGTTTGGGG
Found at i:64368895 original size:7 final size:7
Alignment explanation
Indices: 64367167--64368892 Score: 1186
Period size: 7 Copynumber: 242.9 Consensus size: 7
64367157 TAATCATTTA
*
64367167 GGGTTTA
1 GGGTTTG
64367174 GGGTTTG
1 GGGTTTG
64367181 GGGTTTG
1 GGGTTTG
* *
64367188 GGGGTCG
1 GGGTTTG
* *
64367195 GGGGTCG
1 GGGTTTG
* *
64367202 GGGGTCG
1 GGGTTTG
* *
64367209 GGGCTCG
1 GGGTTTG
* *
64367216 GGGCTCG
1 GGGTTTG
* *
64367223 GGGCTCG
1 GGGTTTG
* *
64367230 GGGCTCG
1 GGGTTTG
*
64367237 GGGTTTTA
1 GGG-TTTG
*
64367245 GGGCTTG
1 GGGTTTG
*
64367252 GGGCTTGG
1 GGG-TTTG
*
64367260 GGGTTGG
1 GGGTTTG
*
64367267 GGGTTGG
1 GGGTTTG
*
64367274 GGGTTGG
1 GGGTTTG
**
64367281 GGGTTCA
1 GGGTTTG
*
64367288 GGGTTCG
1 GGGTTTG
*
64367295 AGGTTTAG
1 GGGTTT-G
*
64367303 GGTTTTTG
1 GG-GTTTG
*
64367311 GGGTTTTAA
1 GGG-TTT-G
*
64367320 GGTTTTG
1 GGGTTTG
64367327 GGGTTTTTAG
1 GGG--TTT-G
* *
64367337 GGTTTTA
1 GGGTTTG
*
64367344 GGGTTTA
1 GGGTTTG
*
64367351 GGGTTTA
1 GGGTTTG
*
64367358 GGGTTTA
1 GGGTTTG
*
64367365 GGGTTTA
1 GGGTTTG
**
64367372 GGGTTCA
1 GGGTTTG
64367379 GGGTTTG
1 GGGTTTG
**
64367386 GGGTTCA
1 GGGTTTG
**
64367393 GGGTTCA
1 GGGTTTG
64367400 GGGTTT-
1 GGGTTTG
*
64367406 AGGTTTG
1 GGGTTTG
64367413 GGGTTTG
1 GGGTTTG
64367420 GGGTTTG
1 GGGTTTG
*
64367427 GGGTTTTA
1 GGG-TTTG
64367435 GGGTTTG
1 GGGTTTG
**
64367442 GGACTTG
1 GGGTTTG
*
64367449 GGGTTTA
1 GGGTTTG
*
64367456 GGGTTTA
1 GGGTTTG
* *
64367463 GGGTCTA
1 GGGTTTG
64367470 GGGTTTAG
1 GGGTTT-G
** *
64367478 GTTTTTTA
1 G-GGTTTG
64367486 GGGTTTG
1 GGGTTTG
*
64367493 GGGTTTA
1 GGGTTTG
*
64367500 GAGTTTG
1 GGGTTTG
*
64367507 GGGTTTTA
1 GGG-TTTG
** *
64367515 AAGTTTA
1 GGGTTTG
*
64367522 GGGTTTA
1 GGGTTTG
**
64367529 GGGTTCA
1 GGGTTTG
**
64367536 GGGTTCA
1 GGGTTTG
**
64367543 GGGTTCA
1 GGGTTTG
64367550 GGGTTTAG
1 GGGTTT-G
* *
64367558 GGTTTTA
1 GGGTTTG
64367565 GGGTTTAG
1 GGGTTT-G
* *
64367573 GGTTTTA
1 GGGTTTG
64367580 GGGTTTAG
1 GGGTTT-G
* *
64367588 GGTTTTA
1 GGGTTTG
*
64367595 GGGTTTA
1 GGGTTTG
*
64367602 GGGTTTA
1 GGGTTTG
64367609 GGGTTTG
1 GGGTTTG
64367616 GGGTTTG
1 GGGTTTG
*
64367623 GGGCTTG
1 GGGTTTG
*
64367630 GGGCTTG
1 GGGTTTG
*
64367637 GGGCTTG
1 GGGTTTG
*
64367644 GGGCTTG
1 GGGTTTG
*
64367651 GGGCTTG
1 GGGTTTG
*
64367658 GGGCTTG
1 GGGTTTG
*
64367665 GGGCTTG
1 GGGTTTG
*
64367672 GGGCTTG
1 GGGTTTG
64367679 GGG-TT-
1 GGGTTTG
64367684 GGGTTTG
1 GGGTTTG
64367691 GGGTTTG
1 GGGTTTG
64367698 GGGTTTG
1 GGGTTTG
64367705 GGGTTTG
1 GGGTTTG
64367712 GGGTTT-
1 GGGTTTG
*
64367718 GGGTTTA
1 GGGTTTG
*
64367725 GGGCTTG
1 GGGTTTG
*
64367732 GGGCTTG
1 GGGTTTG
*
64367739 GGGCTTG
1 GGGTTTG
*
64367746 GGGCTTG
1 GGGTTTG
*
64367753 GGGCTTG
1 GGGTTTG
*
64367760 GGGCTTG
1 GGGTTTG
*
64367767 GGGCTTG
1 GGGTTTG
*
64367774 GGGCTTG
1 GGGTTTG
*
64367781 GGGCTTG
1 GGGTTTG
*
64367788 GGGCTTAG
1 GGG-TTTG
*
64367796 GGTTTTG
1 GGGTTTG
*
64367803 GGGCTTG
1 GGGTTTG
64367810 GGGTTTTG
1 GGG-TTTG
*
64367818 GGGCTTG
1 GGGTTTG
64367825 GGGTTTGG
1 GGGTTT-G
*
64367833 GGGCTTG
1 GGGTTTG
64367840 GGGTTTGG
1 GGGTTT-G
*
64367848 GGGCTTG
1 GGGTTTG
64367855 GGGTTTG
1 GGGTTTG
*
64367862 GGGCTTG
1 GGGTTTG
64367869 GGGTTTG
1 GGGTTTG
*
64367876 GGGCTTG
1 GGGTTTG
64367883 GGGTTTG
1 GGGTTTG
64367890 GGGTTTG
1 GGGTTTG
64367897 GGGTTTG
1 GGGTTTG
64367904 GGGTTTG
1 GGGTTTG
64367911 GGGTTTG
1 GGGTTTG
*
64367918 GGGTTGTA
1 GGGTT-TG
*
64367926 GGGTTTA
1 GGGTTTG
64367933 GGGTTTG
1 GGGTTTG
64367940 GGGTTTG
1 GGGTTTG
64367947 GGGTTTG
1 GGGTTTG
64367954 GGGTTTG
1 GGGTTTG
64367961 GGGTTTG
1 GGGTTTG
64367968 GGGTTTG
1 GGGTTTG
64367975 GGGTTTG
1 GGGTTTG
64367982 GGGTTTG
1 GGGTTTG
64367989 GGGTTTG
1 GGGTTTG
64367996 GGGTTTG
1 GGGTTTG
64368003 GGGTTTG
1 GGGTTTG
64368010 GGGTTTG
1 GGGTTTG
64368017 GGGTTTG
1 GGGTTTG
*
64368024 GGGTTTTA
1 GGG-TTTG
*
64368032 GGGTTTA
1 GGGTTTG
*
64368039 GGGTTTA
1 GGGTTTG
*
64368046 GGGTTTA
1 GGGTTTG
*
64368053 GGGTTTA
1 GGGTTTG
64368060 GGGTTTAG
1 GGGTTT-G
* *
64368068 GGTTTTA
1 GGGTTTG
*
64368075 GGGTTTA
1 GGGTTTG
*
64368082 GGGTTTA
1 GGGTTTG
*
64368089 GGGTTTA
1 GGGTTTG
*
64368096 GGGTTTA
1 GGGTTTG
*
64368103 GGGTTTA
1 GGGTTTG
* *
64368110 TGGTTTA
1 GGGTTTG
64368117 GGGTTTG
1 GGGTTTG
**
64368124 GGGTTCA
1 GGGTTTG
*
64368131 GGGTTTA
1 GGGTTTG
64368138 GGGTTT-
1 GGGTTTG
* *
64368144 GGGATTA
1 GGGTTTG
64368151 GGGTTTG
1 GGGTTTG
64368158 GGGTTTG
1 GGGTTTG
*
64368165 GGGTTTTA
1 GGG-TTTG
64368173 GGGTTTG
1 GGGTTTG
*
64368180 GGATTTG
1 GGGTTTG
*
64368187 GGGTTTA
1 GGGTTTG
*
64368194 GGGTTTA
1 GGGTTTG
* *
64368201 GGGTCTA
1 GGGTTTG
64368208 GGGTTTAG
1 GGGTTT-G
** *
64368216 GTTTTTTA
1 G-GGTTTG
64368224 GGGTTTG
1 GGGTTTG
*
64368231 GGGTTTA
1 GGGTTTG
*
64368238 GAGTTTG
1 GGGTTTG
*
64368245 GGGTTTTA
1 GGG-TTTG
** *
64368253 AAGTTTA
1 GGGTTTG
*
64368260 GGGTTTA
1 GGGTTTG
*
64368267 GGGTTTA
1 GGGTTTG
**
64368274 GGGTTCA
1 GGGTTTG
* **
64368281 AGGTTCA
1 GGGTTTG
*
64368288 GGGTTCAG
1 GGGTT-TG
* *
64368296 GGTTTTA
1 GGGTTTG
64368303 GGGTTTAG
1 GGGTTT-G
* *
64368311 GGTTTTA
1 GGGTTTG
64368318 GGGTTTAG
1 GGGTTT-G
* *
64368326 GGTTTTA
1 GGGTTTG
* *
64368333 AGGTTTA
1 GGGTTTG
* *
64368340 GGATTTA
1 GGGTTTG
64368347 GGGTTTG
1 GGGTTTG
64368354 GGGTTTG
1 GGGTTTG
*
64368361 GGGCTTG
1 GGGTTTG
*
64368368 GGGCTTG
1 GGGTTTG
*
64368375 GGGCTTG
1 GGGTTTG
*
64368382 GGGCTTG
1 GGGTTTG
*
64368389 GGGCTTG
1 GGGTTTG
*
64368396 GGGCTTG
1 GGGTTTG
*
64368403 GGGCTTG
1 GGGTTTG
*
64368410 GGGCTTG
1 GGGTTTG
*
64368417 GGGCTTG
1 GGGTTTG
*
64368424 GGGCTTG
1 GGGTTTG
64368431 GGGTTTG
1 GGGTTTG
64368438 GGGTTTG
1 GGGTTTG
64368445 GGGTTTG
1 GGGTTTG
64368452 GGGTTTG
1 GGGTTTG
64368459 GGGTTT-
1 GGGTTTG
*
64368465 GGGTTTA
1 GGGTTTG
*
64368472 GGGCTTG
1 GGGTTTG
*
64368479 GGGCTTG
1 GGGTTTG
*
64368486 GGGCTTG
1 GGGTTTG
*
64368493 GGGCTTG
1 GGGTTTG
*
64368500 GGGCTTG
1 GGGTTTG
*
64368507 GGGCTTG
1 GGGTTTG
*
64368514 GGGCTTG
1 GGGTTTG
*
64368521 GGGCTTG
1 GGGTTTG
*
64368528 GGGCTTGG
1 GGG-TTTG
*
64368536 GGGCTTG
1 GGGTTTG
*
64368543 GGGCTTGG
1 GGG-TTTG
*
64368551 GGGCTTG
1 GGGTTTG
*
64368558 GGGCTTG
1 GGGTTTG
*
64368565 GGGCTTG
1 GGGTTTG
*
64368572 GGGCTTG
1 GGGTTTG
*
64368579 GGGCTTG
1 GGGTTTG
*
64368586 GGGCTTG
1 GGGTTTG
*
64368593 GGGCTTG
1 GGGTTTG
*
64368600 GGGCTTG
1 GGGTTTG
*
64368607 GGGCTTG
1 GGGTTTG
*
64368614 GGGCTTG
1 GGGTTTG
*
64368621 GGGCTTG
1 GGGTTTG
*
64368628 GGGCTTG
1 GGGTTTG
*
64368635 GGGCTTG
1 GGGTTTG
*
64368642 GGGCTTG
1 GGGTTTG
*
64368649 GGGCTTG
1 GGGTTTG
*
64368656 GGGCTTG
1 GGGTTTG
*
64368663 GGGCTTG
1 GGGTTTG
*
64368670 GGGCTTG
1 GGGTTTG
*
64368677 GGGCTT-
1 GGGTTTG
*
64368683 GGGCTTG
1 GGGTTTG
64368690 GGGTTTG
1 GGGTTTG
64368697 GGGTTTG
1 GGGTTTG
64368704 GGGTTTG
1 GGGTTTG
64368711 GGGTTTG
1 GGGTTTG
64368718 GGGTTTG
1 GGGTTTG
64368725 GGGTTTG
1 GGGTTTG
64368732 GGGTTTG
1 GGGTTTG
64368739 GGGTTTG
1 GGGTTTG
64368746 GGGTTTGG
1 GGGTTT-G
64368754 GGGTTTG
1 GGGTTTG
64368761 GGGTTTG
1 GGGTTTG
64368768 GGGTTT-
1 GGGTTTG
64368774 GGGTTTGG
1 GGGTTT-G
*
64368782 GGGTTTA
1 GGGTTTG
*
64368789 GGGTTTA
1 GGGTTTG
64368796 GGGTTTAG
1 GGGTTT-G
64368804 GGGTTT-
1 GGGTTTG
* *
64368810 AGGTTTA
1 GGGTTTG
*
64368817 GGGTTTA
1 GGGTTTG
*
64368824 GGGTTTA
1 GGGTTTG
*
64368831 GGGTTTA
1 GGGTTTG
*
64368838 GGGTTTA
1 GGGTTTG
64368845 GGGTTTAG
1 GGGTTT-G
* *
64368853 GGTTTTA
1 GGGTTTG
*
64368860 GGGTTTA
1 GGGTTTG
64368867 GGGTTT-
1 GGGTTTG
* *
64368873 AGGTTTA
1 GGGTTTG
*
64368880 GGGTTTA
1 GGGTTTG
64368887 GGGTTT
1 GGGTTT
64368893 AGGTTTTTTT
Statistics
Matches: 1495, Mismatches: 178, Indels: 92
0.85 0.10 0.05
Matches are distributed among these distances:
5 3 0.00
6 48 0.03
7 1278 0.85
8 149 0.10
9 14 0.01
10 3 0.00
ACGTcount: A:0.06, C:0.05, G:0.50, T:0.38
Consensus pattern (7 bp):
GGGTTTG
Found at i:64368902 original size:1 final size:1
Alignment explanation
Indices: 64368896--64368942 Score: 94
Period size: 1 Copynumber: 47.0 Consensus size: 1
64368886 AGGGTTTAGG
64368896 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
64368943 AGGGTTTTAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:64368958 original size:7 final size:7
Alignment explanation
Indices: 64368940--64368997 Score: 107
Period size: 7 Copynumber: 8.1 Consensus size: 7
64368930 TTTTTTTTTT
64368940 TTTAGGG
1 TTTAGGG
64368947 TTTTAGGG
1 -TTTAGGG
64368955 TTTAGGG
1 TTTAGGG
64368962 TTTAGGG
1 TTTAGGG
64368969 TTTAGGG
1 TTTAGGG
64368976 TTTAGGG
1 TTTAGGG
64368983 TTTAGGG
1 TTTAGGG
64368990 TTTAGGG
1 TTTAGGG
64368997 T
1 T
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
7 43 0.86
8 7 0.14
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Done.