Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 22 of 208
Found at i:8609206 original size:5 final size:6
Alignment explanation
Indices: 8609190--8609216 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
8609180 CAACTGCCCC
8609190 ATTTTT ATTTTT ATTTTT ATTTTT ATT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATT
8609217 GTAATCCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
ATTTTT
Found at i:8620960 original size:27 final size:27
Alignment explanation
Indices: 8620930--8620986 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
8620920 TTTATATACA
8620930 AATACA-TTTATAAAACTAATATTAATT
1 AATACACTTTATAAAA-TAATATTAATT
* * **
8620957 AATATACTTTTTGTAATAATATTAATT
1 AATACACTTTATAAAATAATATTAATT
8620984 AAT
1 AAT
8620987 TTTAATAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (27 bp):
AATACACTTTATAAAATAATATTAATT
Found at i:8622469 original size:12 final size:12
Alignment explanation
Indices: 8622449--8622483 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
8622439 CTAATGACAT
8622449 TGTAAAAATTTA
1 TGTAAAAATTTA
*
8622461 TGTATAAATTTA
1 TGTAAAAATTTA
8622473 TGTCAAAAATT
1 TGT-AAAAATT
8622484 GAAGCACAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.43
Consensus pattern (12 bp):
TGTAAAAATTTA
Found at i:8629272 original size:10 final size:9
Alignment explanation
Indices: 8629252--8629318 Score: 71
Period size: 9 Copynumber: 7.0 Consensus size: 9
8629242 TTGAAAGAGC
8629252 TTATAAAAA
1 TTATAAAAA
8629261 TTATATAAAA
1 TTATA-AAAA
8629271 TTATAAAAA
1 TTATAAAAA
*
8629280 TTCATACAAAC
1 TT-ATA-AAAA
8629291 TTATAAAAA
1 TTATAAAAA
*
8629300 TTCTTAAAAA
1 TT-ATAAAAA
*
8629310 GTATAAAAA
1 TTATAAAAA
8629319 AATTATGTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 22 0.45
10 22 0.45
11 5 0.10
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:8629274 original size:19 final size:20
Alignment explanation
Indices: 8629252--8629318 Score: 84
Period size: 19 Copynumber: 3.5 Consensus size: 20
8629242 TTGAAAGAGC
*
8629252 TTATAAAAATT-ATATAAAA
1 TTATAAAAATTCATACAAAA
*
8629271 TTATAAAAATTCATACAAAC
1 TTATAAAAATTCATACAAAA
*
8629291 TTATAAAAATTCTTA-AAAA
1 TTATAAAAATTCATACAAAA
*
8629310 GTATAAAAA
1 TTATAAAAA
8629319 AATTATGTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 22 0.52
20 20 0.48
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (20 bp):
TTATAAAAATTCATACAAAA
Found at i:8629294 original size:20 final size:20
Alignment explanation
Indices: 8629251--8629302 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
8629241 ATTGAAAGAG
*
8629251 CTTATAAAAATT-ATATAAA
1 CTTATAAAAATTCATACAAA
*
8629270 ATTATAAAAATTCATACAAA
1 CTTATAAAAATTCATACAAA
8629290 CTTATAAAAATTC
1 CTTATAAAAATTC
8629303 TTAAAAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.35
Consensus pattern (20 bp):
CTTATAAAAATTCATACAAA
Found at i:8634318 original size:43 final size:43
Alignment explanation
Indices: 8634257--8634344 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
8634247 TTCAATTGAG
8634257 CTGATTATTCTCAATTAACACTATATTCCATCACTTTAAACTA
1 CTGATTATTCTCAATTAACACTATATTCCATCACTTTAAACTA
*
8634300 CTGATTTTTCTCAATTAACACTATATTCCATCACTTTAAACTA
1 CTGATTATTCTCAATTAACACTATATTCCATCACTTTAAACTA
8634343 CT
1 CT
8634345 TTATAACCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (43 bp):
CTGATTATTCTCAATTAACACTATATTCCATCACTTTAAACTA
Found at i:8634338 original size:21 final size:21
Alignment explanation
Indices: 8634271--8634342 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 21
8634261 TTATTCTCAA
8634271 TTAACACTATATTCCATCACT
1 TTAACACTATATTCCATCACT
* * *
8634292 TTAAACTACTGATTTTTC-TCA-A
1 TT-AAC-ACT-ATATTCCATCACT
8634314 TTAACACTATATTCCATCACT
1 TTAACACTATATTCCATCACT
8634335 TTAA-ACTA
1 TTAACACTA
8634343 CTTTATAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
19 5 0.12
20 10 0.25
21 9 0.22
22 5 0.12
23 6 0.15
24 5 0.12
ACGTcount: A:0.35, C:0.24, G:0.01, T:0.40
Consensus pattern (21 bp):
TTAACACTATATTCCATCACT
Found at i:8646995 original size:2 final size:2
Alignment explanation
Indices: 8646988--8647014 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8646978 TGGAATCCTT
8646988 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
8647015 GTCTGTCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8653144 original size:13 final size:13
Alignment explanation
Indices: 8653123--8653156 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8653113 TATCCAACCA
8653123 AACCCAATTACCC
1 AACCCAATTACCC
* *
8653136 AATCCAATTATCC
1 AACCCAATTACCC
8653149 AACCCAAT
1 AACCCAAT
8653157 AAAACTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:8653237 original size:38 final size:39
Alignment explanation
Indices: 8653139--8653252 Score: 169
Period size: 39 Copynumber: 3.0 Consensus size: 39
8653129 ATTACCCAAT
* *
8653139 CCAATTATCCAACCCAATAAAACTAAAATTAAAGTCTAC
1 CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTAC
* *
8653178 CCAATTACCCAACTCAATAAAACTAAAACTAGAGTCTAC
1 CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTAC
*
8653217 CCAATTA-CCAACCCAATAAAAATAAAACTAAA-TCTA
1 CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTA
8653253 ACTCTTAAGT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 4 0.06
38 22 0.32
39 42 0.62
ACGTcount: A:0.50, C:0.26, G:0.03, T:0.21
Consensus pattern (39 bp):
CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTAC
Found at i:8653408 original size:17 final size:17
Alignment explanation
Indices: 8653388--8653450 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
8653378 TAATTTCAAG
8653388 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
8653405 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
8653423 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
8653442 AATTATGTA
1 AATTATGTA
8653451 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:8653412 original size:37 final size:37
Alignment explanation
Indices: 8653385--8653459 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
8653375 TGTTAATTTC
* *
8653385 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
8653422 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
8653459 A
1 A
8653460 TTCGGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:8654891 original size:17 final size:18
Alignment explanation
Indices: 8654871--8654905 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8654861 TTTTCGTTAA
8654871 TAAATAATT-TAAATTAT
1 TAAATAATTATAAATTAT
*
8654888 TAAATATTTATAAATTAT
1 TAAATAATTATAAATTAT
8654906 ACTAAATAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAATAATTATAAATTAT
Found at i:8659431 original size:18 final size:18
Alignment explanation
Indices: 8659408--8659444 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8659398 TTGCATCACT
8659408 GCAAAATAAAGGAATGAG
1 GCAAAATAAAGGAATGAG
8659426 GCAAAATAAAGGAATGAG
1 GCAAAATAAAGGAATGAG
8659444 G
1 G
8659445 TCAACAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.30, T:0.11
Consensus pattern (18 bp):
GCAAAATAAAGGAATGAG
Found at i:8663380 original size:11 final size:11
Alignment explanation
Indices: 8663364--8663388 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8663354 TTGGTAATCC
8663364 ATTATTTATCT
1 ATTATTTATCT
8663375 ATTATTTATCT
1 ATTATTTATCT
8663386 ATT
1 ATT
8663389 TAACCTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTTATCT
Found at i:8663801 original size:22 final size:21
Alignment explanation
Indices: 8663776--8663836 Score: 59
Period size: 24 Copynumber: 2.7 Consensus size: 21
8663766 TCAATTGAAG
8663776 TTTAATTCAAGATTTAAAGTAT
1 TTTAATTCAA-ATTTAAAGTAT
* *
8663798 TTTAAATTACAAATTTTCATGTAT
1 TTT-AATT-CAAA-TTTAAAGTAT
*
8663822 TTTACTTCAAATTTA
1 TTTAATTCAAATTTA
8663837 TCACTTCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
21 3 0.09
22 7 0.22
23 8 0.25
24 14 0.44
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (21 bp):
TTTAATTCAAATTTAAAGTAT
Found at i:8666792 original size:27 final size:27
Alignment explanation
Indices: 8666762--8666816 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8666752 AAAGCTGGTG
*
8666762 CAGCAGCAGCCACCCCAGGGTTAAACC
1 CAGCAGCAGCAACCCCAGGGTTAAACC
* *
8666789 CAGCAGCAGCAACTCCAGGGTTGAACC
1 CAGCAGCAGCAACCCCAGGGTTAAACC
8666816 C
1 C
8666817 CACTCCCACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.09
Consensus pattern (27 bp):
CAGCAGCAGCAACCCCAGGGTTAAACC
Found at i:8667799 original size:6 final size:6
Alignment explanation
Indices: 8667790--8667859 Score: 52
Period size: 6 Copynumber: 11.7 Consensus size: 6
8667780 CTCCTCTTCC
** * * ** *
8667790 TCCTCT TCCTCT TCCAGT TCCACT TCCTCT TCTTCT TCAACC TCCTCT
1 TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT
*
8667838 T-CTACT TCCTCT TCCACT TCCT
1 TCCT-CT TCCTCT TCCTCT TCCT
8667860 GTAGTTTCTG
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
5 2 0.04
6 45 0.92
7 2 0.04
ACGTcount: A:0.09, C:0.46, G:0.01, T:0.44
Consensus pattern (6 bp):
TCCTCT
Found at i:8667856 original size:12 final size:12
Alignment explanation
Indices: 8667794--8667859 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
8667784 TCTTCCTCCT
8667794 CTTCCTCTTCCA
1 CTTCCTCTTCCA
* * *
8667806 GTTCCACTTCCT
1 CTTCCTCTTCCA
* *
8667818 CTTCTTCTTCAA
1 CTTCCTCTTCCA
* *
8667830 CCTCCTCTTCTA
1 CTTCCTCTTCCA
8667842 CTTCCTCTTCCA
1 CTTCCTCTTCCA
8667854 CTTCCT
1 CTTCCT
8667860 GTAGTTTCTG
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (12 bp):
CTTCCTCTTCCA
Found at i:8667857 original size:18 final size:18
Alignment explanation
Indices: 8667794--8667857 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
8667784 TCTTCCTCCT
* *
8667794 CTTCCTCTTCCAGTTCCA
1 CTTCCTCTTCTACTTCCA
* *
8667812 CTTCCTCTTCTTCTTCAA
1 CTTCCTCTTCTACTTCCA
* *
8667830 CCTCCTCTTCTACTTCCT
1 CTTCCTCTTCTACTTCCA
*
8667848 CTTCCACTTC
1 CTTCCTCTTC
8667858 CTGTAGTTTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (18 bp):
CTTCCTCTTCTACTTCCA
Found at i:8669273 original size:18 final size:17
Alignment explanation
Indices: 8669250--8669294 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
8669240 AAGGGTTAAT
8669250 TTTAATTTTTTAATATTA
1 TTTAATTTTTTAAT-TTA
*
8669268 TTTAATATTTTTCATTTA
1 TTTAAT-TTTTTAATTTA
*
8669286 TGTAATTTT
1 TTTAATTTT
8669295 AATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 14 0.58
19 7 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTAATTTTTTAATTTA
Found at i:8669320 original size:26 final size:26
Alignment explanation
Indices: 8669245--8669321 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 26
8669235 ATGGTAAGGG
* *
8669245 TTAATTTTAATTTTTTAATATTATTTAA
1 TTAATTTTTATTTTATAA-ATT-TTTAA
*
8669273 -T-ATTTTTCA-TTTATGTAA-TTTTAA
1 TTAATTTTT-ATTTTAT-AAATTTTTAA
8669297 TTAATTTTTATTTTATAAATTTTTA
1 TTAATTTTTATTTTATAAATTTTTA
8669322 TAACAGTCTG
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
24 5 0.13
25 5 0.13
26 26 0.67
27 3 0.08
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (26 bp):
TTAATTTTTATTTTATAAATTTTTAA
Found at i:8675409 original size:2 final size:2
Alignment explanation
Indices: 8675404--8675437 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8675394 TTGATATATA
8675404 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8675438 CGCTAGAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8680188 original size:2 final size:2
Alignment explanation
Indices: 8680181--8680217 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8680171 GCAATCACTT
8680181 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8680218 TCAGAACTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8681699 original size:22 final size:21
Alignment explanation
Indices: 8681674--8681718 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
8681664 AATAGAATAA
8681674 ATTTAATATTA-ATTGTGAATTT
1 ATTTAATATTACATT-T-AATTT
*
8681696 ATTTAATCTTACATTTAATTT
1 ATTTAATATTACATTTAATTT
8681717 AT
1 AT
8681719 CAAATACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 11 0.52
23 3 0.14
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (21 bp):
ATTTAATATTACATTTAATTT
Found at i:8690723 original size:31 final size:32
Alignment explanation
Indices: 8690688--8690753 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
8690678 TTTTTTAGTT
*
8690688 AAATTT-ACTCATCAACCTTTT-AAAAAGAGTC
1 AAATTTGACT-ATCAACCTTTTGAAAAAGAATC
* *
8690719 AAATTTGACTATTAGCCTTTTGAAAAAGAATC
1 AAATTTGACTATCAACCTTTTGAAAAAGAATC
8690751 AAA
1 AAA
8690754 ATGATAATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 15 0.50
32 15 0.50
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (32 bp):
AAATTTGACTATCAACCTTTTGAAAAAGAATC
Found at i:8701896 original size:26 final size:26
Alignment explanation
Indices: 8701867--8701930 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
8701857 CATAACTTTG
8701867 AAAAGCTT-AATTTTACTATTTCAATC
1 AAAA-CTTCAATTTTACTATTTCAATC
*
8701893 AAAATTTCAATTTTACTATTTCAATC
1 AAAACTTCAATTTTACTATTTCAATC
*
8701919 AAAATTTCAATT
1 AAAACTTCAATT
8701931 AGCTCTTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 2 0.06
26 34 0.94
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.44
Consensus pattern (26 bp):
AAAACTTCAATTTTACTATTTCAATC
Found at i:8705914 original size:19 final size:19
Alignment explanation
Indices: 8705890--8705928 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8705880 TTTCCTCAGA
8705890 TATACTTCTTTCAACTTAC
1 TATACTTCTTTCAACTTAC
8705909 TATACTTCTTTCAACTTAC
1 TATACTTCTTTCAACTTAC
8705928 T
1 T
8705929 GCAGTGCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (19 bp):
TATACTTCTTTCAACTTAC
Found at i:8706987 original size:29 final size:29
Alignment explanation
Indices: 8706946--8707008 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
8706936 AATTTTTAAT
*
8706946 AAATATTAAAAAATTATTTTAAAAATAAA
1 AAATATTAAAAAAATATTTTAAAAATAAA
** *
8706975 AAATATTTTAAAAATATTTTAAAATTAAA
1 AAATATTAAAAAAATATTTTAAAAATAAA
8707004 AAATA
1 AAATA
8707009 AAAATAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (29 bp):
AAATATTAAAAAAATATTTTAAAAATAAA
Found at i:8706999 original size:10 final size:11
Alignment explanation
Indices: 8706939--8706998 Score: 58
Period size: 11 Copynumber: 5.7 Consensus size: 11
8706929 CCAGACCAAT
8706939 TTTTAATAAATA
1 TTTTAA-AAATA
*
8706951 -TTAAAAAATTA
1 TTTTAAAAA-TA
8706962 TTTTAAAAATA
1 TTTTAAAAATA
8706973 ----AAAAATA
1 TTTTAAAAATA
8706980 TTTTAAAAATA
1 TTTTAAAAATA
8706991 TTTTAAAA
1 TTTTAAAA
8706999 TTAAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
7 7 0.17
10 3 0.08
11 23 0.57
12 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:8707008 original size:18 final size:19
Alignment explanation
Indices: 8706952--8706990 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
8706942 TAATAAATAT
8706952 TAAAAAATTATTTTAAAAA
1 TAAAAAATTATTTTAAAAA
8706971 TAAAAAA-TATTTTAAAAA
1 TAAAAAATTATTTTAAAAA
8706989 TA
1 TA
8706991 TTTTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAAAATTATTTTAAAAA
Found at i:8708650 original size:18 final size:18
Alignment explanation
Indices: 8708629--8708680 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 18
8708619 ATTAAATTAT
8708629 ATATATTTAAAAAATATA
1 ATATATTTAAAAAATATA
8708647 ATATA-TT-AAAAATACTA
1 ATATATTTAAAAAATA-TA
*
8708664 A-AAATATTAAAAAATAT
1 ATATAT-TTAAAAAATAT
8708681 TTTTCAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 9 0.31
17 5 0.17
18 8 0.28
19 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
ATATATTTAAAAAATATA
Found at i:8718141 original size:39 final size:39
Alignment explanation
Indices: 8718082--8718187 Score: 149
Period size: 39 Copynumber: 2.6 Consensus size: 39
8718072 AATTTATTTT
*
8718082 AAAAATTAAAAAAATCATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAGT-ATTTTAAAAATATTTTAAAATTAA
*
8718122 AAAAATTAAAAATGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
8718161 AAATATTTTAAAAAAAGTATTTTAAAA
1 AAA-A-ATT-AAAAAAGTATTTTAAAA
8718188 TTAAAAAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 27 0.46
40 14 0.24
41 2 0.03
42 16 0.27
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (39 bp):
AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:8718159 original size:30 final size:30
Alignment explanation
Indices: 8718123--8718194 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
8718113 TAAAATTAAA
8718123 AAAATTAAAAATGTATTTT-AAAAA-TATTTT
1 AAAATTAAAAA--TATTTTAAAAAAGTATTTT
8718153 AAAATTAAAAATATTTTAAAAAAAGTATTTT
1 AAAATTAAAAATATTTT-AAAAAAGTATTTT
8718184 AAAATTAAAAA
1 AAAATTAAAAA
8718195 ATAAAAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
28 6 0.15
30 16 0.41
31 17 0.44
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATTAAAAATATTTTAAAAAAGTATTTT
Found at i:8718214 original size:32 final size:32
Alignment explanation
Indices: 8718141--8718214 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
8718131 AAATGTATTT
***
8718141 TAAAAATATTTTAAAATTAAAAATATTTTAAA
1 TAAAAATATTTTAAAATTAAAAATATAAAAAA
*
8718173 -AAAAGTATTTTAAAATTAAAAA-ATAAAAAAA
1 TAAAAATATTTTAAAATTAAAAATAT-AAAAAA
8718204 TAAAAATATTT
1 TAAAAATATTT
8718215 ATTATATTCG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 2 0.06
31 24 0.69
32 9 0.26
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (32 bp):
TAAAAATATTTTAAAATTAAAAATATAAAAAA
Found at i:8719265 original size:25 final size:25
Alignment explanation
Indices: 8719237--8719292 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
8719227 AAGTATTATA
8719237 CAGAGAACACAAATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
* **
8719262 CAGAGAGCACCGATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
8719287 CAGAGA
1 CAGAGA
8719293 GCAAGCTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (25 bp):
CAGAGAACACAAATGTGCTAATAAT
Found at i:8721291 original size:33 final size:35
Alignment explanation
Indices: 8721245--8721349 Score: 97
Period size: 38 Copynumber: 2.9 Consensus size: 35
8721235 TCGGATAGTT
*
8721245 CGAAGCAATAGTTGACACCCAGTGTCTCATCTATC
1 CGAAGAAATAGTTGACACCCAGTGTCTCATCTATC
** *
8721280 CGAAG-AA-AGTTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGAAATAGTTGACACCCAGT--GTC-TC--ATCTATC
*
8721318 CGAAGAAATATTGTGACACCCAGTGTCTCATC
1 CGAAGAAATAGT-TGACACCCAGTGTCTCATC
8721350 GACTCGAGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 15
0.71 0.09 0.19
Matches are distributed among these distances:
33 12 0.22
34 2 0.04
35 7 0.13
36 5 0.09
38 14 0.25
39 4 0.07
40 2 0.04
41 9 0.16
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (35 bp):
CGAAGAAATAGTTGACACCCAGTGTCTCATCTATC
Found at i:8721674 original size:6 final size:6
Alignment explanation
Indices: 8721663--8721730 Score: 84
Period size: 6 Copynumber: 11.3 Consensus size: 6
8721653 TAATTCCCAC
* *
8721663 TAATAA TAATAA TAATAA TAATAA TAATAA TACTAA TAATAA TACTAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* *
8721711 TACA-AA TACTAA TATTAA TA
1 TA-ATAA TAATAA TAATAA TA
8721731 CTTACATCAC
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (6 bp):
TAATAA
Found at i:8721680 original size:12 final size:12
Alignment explanation
Indices: 8721663--8721732 Score: 97
Period size: 12 Copynumber: 5.8 Consensus size: 12
8721653 TAATTCCCAC
*
8721663 TAATAATAATAA
1 TAATAATACTAA
*
8721675 TAATAATAATAA
1 TAATAATACTAA
8721687 TAATAATACTAA
1 TAATAATACTAA
8721699 TAATAATACTAA
1 TAATAATACTAA
8721711 TACA-AATACTAA
1 TA-ATAATACTAA
*
8721723 TATTAATACT
1 TAATAATACT
8721733 TACATCACAT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
12 53 0.98
13 1 0.02
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (12 bp):
TAATAATACTAA
Found at i:8722832 original size:9 final size:9
Alignment explanation
Indices: 8722788--8722832 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
8722778 CATTTAAATA
8722788 AATAATTAT
1 AATAATTAT
8722797 AATAATTAT
1 AATAATTAT
8722806 AATAATTAT
1 AATAATTAT
8722815 -ATACA-TAT
1 AATA-ATTAT
*
8722823 AATATTTAT
1 AATAATTAT
8722832 A
1 A
8722833 TATATCTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (9 bp):
AATAATTAT
Found at i:8729054 original size:276 final size:275
Alignment explanation
Indices: 8728517--8729345 Score: 1613
Period size: 275 Copynumber: 3.0 Consensus size: 275
8728507 TAGACAAAAA
8728517 TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
1 TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
8728582 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
66 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
8728647 GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGTT
131 GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGTT
8728712 TTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTAA
196 TTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTAA
8728777 TCTAGGGTTTATATT
261 TCTAGGGTTTATATT
8728792 TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
1 TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
8728857 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
66 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
*
8728922 TGGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCTATAATAAGTGATTCTAAGCCCCGT
131 -GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGT
*
8728987 TTTTAATGTTCTTTACGTTTTTGGAGTCCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTA
195 TTTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTA
8729052 ATCTAGGGTTTATATT
260 ATCTAGGGTTTATATT
*
8729068 TGGGCATGAGATAAGTGAAACAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
1 TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
*
8729133 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAACAA
66 AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
8729198 GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGTT
131 GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGTT
8729263 TTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTAA
196 TTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTAA
8729328 TCTAGGGTTTATATT
261 TCTAGGGTTTATATT
8729343 TGG
1 TGG
8729346 AAAAATACCC
Statistics
Matches: 547, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
275 276 0.50
276 271 0.50
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (275 bp):
TGGGCATGAGATAAGTGAAATAGGAAATTTTTAAGTTAGGGGCAATTTGGTAATCTAGTAATTAA
AATGAATTAAAAGGGAAAAAGATGACAAATTGTGCTCATCTTCTTCATTTGGACGAAATCAGCAA
GGGGGAAGCCATTGTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAGTGATTCTAAGCCCCGTT
TTTAATGTTCTTTACGTTTTTGGAGTGCCGGTAACTTGATTTTGCTTCTTCTAGCAATAATTTAA
TCTAGGGTTTATATT
Found at i:8729448 original size:98 final size:98
Alignment explanation
Indices: 8729323--8729510 Score: 376
Period size: 98 Copynumber: 1.9 Consensus size: 98
8729313 CTAGCAATAA
8729323 TTTAATCTAGGGTTTATATTTGGAAAAATACCCATATGTGAAATGTGTTTATTTTGATGTTTTAT
1 TTTAATCTAGGGTTTATATTTGGAAAAATACCCATATGTGAAATGTGTTTATTTTGATGTTTTAT
8729388 GGTAGAATATGAAGCTAGAAATTATTTTGATGT
66 GGTAGAATATGAAGCTAGAAATTATTTTGATGT
8729421 TTTAATCTAGGGTTTATATTTGGAAAAATACCCATATGTGAAATGTGTTTATTTTGATGTTTTAT
1 TTTAATCTAGGGTTTATATTTGGAAAAATACCCATATGTGAAATGTGTTTATTTTGATGTTTTAT
8729486 GGTAGAATATGAAGCTAGAAATTAT
66 GGTAGAATATGAAGCTAGAAATTAT
8729511 GTTAAGCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.43
Consensus pattern (98 bp):
TTTAATCTAGGGTTTATATTTGGAAAAATACCCATATGTGAAATGTGTTTATTTTGATGTTTTAT
GGTAGAATATGAAGCTAGAAATTATTTTGATGT
Found at i:8730211 original size:23 final size:23
Alignment explanation
Indices: 8730185--8730237 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
8730175 AGTGTTATTG
8730185 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8730208 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8730231 ATCAGTG
1 ATCAGTG
8730238 TGGCACTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8730409 original size:38 final size:37
Alignment explanation
Indices: 8730367--8730439 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
8730357 ATGTATGGAA
* *
8730367 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
8730405 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
8730440 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:8732249 original size:28 final size:28
Alignment explanation
Indices: 8732209--8732267 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
8732199 AAATTTAACT
8732209 TACCATTATTTCACACATAAGGTAAGCA
1 TACCATTATTTCACACATAAGGTAAGCA
8732237 TACCATTATTTCACACATAAGGTAAGCA
1 TACCATTATTTCACACATAAGGTAAGCA
8732265 TAC
1 TAC
8732268 AAATATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (28 bp):
TACCATTATTTCACACATAAGGTAAGCA
Found at i:8732274 original size:28 final size:28
Alignment explanation
Indices: 8732215--8732275 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
8732205 AACTTACCAT
* *
8732215 TATTTCACACATAAGGTAAGCATACCAT
1 TATTTCACACATAAGGTAAGCATACAAA
8732243 TATTTCACACATAAGGTAAGCATACAAA
1 TATTTCACACATAAGGTAAGCATACAAA
8732271 TATTT
1 TATTT
8732276 ATCCAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (28 bp):
TATTTCACACATAAGGTAAGCATACAAA
Found at i:8732654 original size:25 final size:24
Alignment explanation
Indices: 8732603--8732669 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 24
8732593 TCTCTCGAGC
* *
8732603 CATATAACAGGAAGCTCGTGTGAG
1 CATATAACAGGAAGCTCATCTGAG
* *
8732627 CTATATAACAGGAAGCTTATCTGGG
1 C-ATATAACAGGAAGCTCATCTGAG
*
8732652 C-TATAACAGGAAACTCAT
1 CATATAACAGGAAGCTCAT
8732670 AAGAGTTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
23 15 0.42
24 1 0.03
25 20 0.56
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (24 bp):
CATATAACAGGAAGCTCATCTGAG
Found at i:8740200 original size:6 final size:6
Alignment explanation
Indices: 8740191--8740215 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8740181 GTAATAATAA
8740191 TTTAAT TTTAAT TTTAAT TTTAAT T
1 TTTAAT TTTAAT TTTAAT TTTAAT T
8740216 ATACAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:8740455 original size:4 final size:4
Alignment explanation
Indices: 8740446--8740471 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8740436 TAACATTAGG
8740446 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
8740472 GTAAAATATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:8740966 original size:75 final size:76
Alignment explanation
Indices: 8740858--8741012 Score: 267
Period size: 75 Copynumber: 2.0 Consensus size: 76
8740848 GATATATATT
*
8740858 TAAATATATCTGGGTGTTCTTGTTGTTTTGTATCGATTTTCTCTTTTTCTTTTCGATGTTTTGAA
1 TAAATATATCTGGGTG-T-GTGTTGTTTTGTATCGATTTTCTCTTTTTCTTTTCGATGTTTTGAA
8740923 TTTTAATTTTTTA
64 TTTTAATTTTTTA
*
8740936 TAAATATATCTGGGTG-GTGTTGTTTTGTATCGATTTTCTCTTTTTCTTTTTGATGTTTTGAATT
1 TAAATATATCTGGGTGTGTGTTGTTTTGTATCGATTTTCTCTTTTTCTTTTCGATGTTTTGAATT
8741000 TTAATTTTTTA
66 TTAATTTTTTA
8741011 TA
1 TA
8741013 CATCCTAGCA
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
75 59 0.79
78 16 0.21
ACGTcount: A:0.17, C:0.08, G:0.15, T:0.60
Consensus pattern (76 bp):
TAAATATATCTGGGTGTGTGTTGTTTTGTATCGATTTTCTCTTTTTCTTTTCGATGTTTTGAATT
TTAATTTTTTA
Found at i:8741203 original size:36 final size:36
Alignment explanation
Indices: 8741156--8741227 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
8741146 ACTCGTTGGT
8741156 ATCCTCTGAATGTTGAGGAGAACTTGAGTGTTTATC
1 ATCCTCTGAATGTTGAGGAGAACTTGAGTGTTTATC
8741192 ATCCTCTGAATGTTGAGGAGAACTTGAGTGTTTATC
1 ATCCTCTGAATGTTGAGGAGAACTTGAGTGTTTATC
8741228 TTATAATTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (36 bp):
ATCCTCTGAATGTTGAGGAGAACTTGAGTGTTTATC
Found at i:8745966 original size:24 final size:24
Alignment explanation
Indices: 8745858--8745989 Score: 180
Period size: 25 Copynumber: 5.5 Consensus size: 24
8745848 ATACGGAACA
* *
8745858 AATA-CAGAGAGCACAAATGTGCT
1 AATATCAGAGAGCACCAACGTGCT
**
8745881 AA-A-CAGAGAGCACTGACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
8745903 AAATATCAGAGAGCACCAACGTGCT
1 -AATATCAGAGAGCACCAACGTGCT
8745928 AATAATCAGAGAGCACCAACGTGCT
1 AAT-ATCAGAGAGCACCAACGTGCT
*
8745953 AATATCAGAAAGCACCAACGTGCT
1 AATATCAGAGAGCACCAACGTGCT
8745977 AATATCAGAGAGC
1 AATATCAGAGAGC
8745990 GCGCTAAAGT
Statistics
Matches: 98, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
22 17 0.17
23 4 0.04
24 36 0.37
25 41 0.42
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (24 bp):
AATATCAGAGAGCACCAACGTGCT
Found at i:8745972 original size:49 final size:49
Alignment explanation
Indices: 8745857--8745989 Score: 175
Period size: 49 Copynumber: 2.8 Consensus size: 49
8745847 TATACGGAAC
* * * **
8745857 AAATA-CAGAGAGCACAAATGTGCTAA-A-CAGAGAGCACTGACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
*
8745903 AAATATCAGAGAGCACCAACGTGCTAATAATCAGAGAGCACCAACGTGCT
1 AAATATCAGAAAGCACCAACGTGCTAAT-ATCAGAGAGCACCAACGTGCT
8745953 -AATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
1 AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGC
8745990 GCGCTAAAGT
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
46 5 0.06
47 19 0.24
48 10 0.13
49 27 0.35
50 17 0.22
ACGTcount: A:0.41, C:0.22, G:0.21, T:0.16
Consensus pattern (49 bp):
AAATATCAGAAAGCACCAACGTGCTAATATCAGAGAGCACCAACGTGCT
Found at i:8746833 original size:12 final size:13
Alignment explanation
Indices: 8746816--8746847 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8746806 GATTTCCATC
8746816 AATTCAAT-CACT
1 AATTCAATCCACT
8746828 AATTC-ATCCACT
1 AATTCAATCCACT
8746840 AATTCAAT
1 AATTCAAT
8746848 ATAAGCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.78
13 2 0.11
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTCAATCCACT
Found at i:8747035 original size:11 final size:11
Alignment explanation
Indices: 8747019--8747044 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8747009 TCTTTCTTTC
8747019 TTTCTCCCCTG
1 TTTCTCCCCTG
8747030 TTTCTCCCCTG
1 TTTCTCCCCTG
8747041 TTTC
1 TTTC
8747045 GTTTCTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:8747124 original size:21 final size:22
Alignment explanation
Indices: 8747095--8747138 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
8747085 CTTTTGCTTT
8747095 ATATATATAATAATATAACATA
1 ATATATATAATAATATAACATA
*
8747117 ATAT-TATAATAATATAATATA
1 ATATATATAATAATATAACATA
8747138 A
1 A
8747139 CAACTCACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATATATAATAATATAACATA
Found at i:8761927 original size:13 final size:14
Alignment explanation
Indices: 8761909--8761937 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8761899 TCTTCTACTC
8761909 TACTCACATG-ATT
1 TACTCACATGTATT
8761922 TACTCACATGTATT
1 TACTCACATGTATT
8761936 TA
1 TA
8761938 AGATTTCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (14 bp):
TACTCACATGTATT
Found at i:8766869 original size:21 final size:21
Alignment explanation
Indices: 8766843--8766883 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8766833 AGACGAGCAA
* *
8766843 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8766864 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8766884 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8779505 original size:14 final size:14
Alignment explanation
Indices: 8779467--8779505 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8779457 ATAATGTTCA
*
8779467 ATATATTTAACGAT
1 ATATATTTAATGAT
*
8779481 ATATATTTAATTAT
1 ATATATTTAATGAT
*
8779495 TTATATTTAAT
1 ATATATTTAAT
8779506 AGTACAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (14 bp):
ATATATTTAATGAT
Found at i:8785909 original size:16 final size:16
Alignment explanation
Indices: 8785888--8785956 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
8785878 TTTGGTTCGC
8785888 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8785904 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8785920 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
8785937 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8785953 TGTA
1 TGTA
8785957 ATAGCTAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8785934 original size:33 final size:32
Alignment explanation
Indices: 8785888--8785956 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
8785878 TTTGGTTCGC
8785888 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
8785920 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
8785953 TGTA
1 TGTA
8785957 ATAGCTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:8786279 original size:157 final size:157
Alignment explanation
Indices: 8786079--8786395 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
8786069 TAGAATACTC
*
8786079 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
8786144 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
8786209 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
* *
8786236 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
8786301 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
8786366 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
8786393 TTA
1 TTA
8786396 ATATTCTTAT
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 24 0.16
157 128 0.84
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:8786366 original size:16 final size:16
Alignment explanation
Indices: 8786329--8786370 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8786319 TTAATCATAT
*
8786329 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
8786345 TT-AAATATATTATAA
1 TTAAAATATATTATAA
8786360 TTAAAATATAT
1 TTAAAATATAT
8786371 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:8786377 original size:14 final size:15
Alignment explanation
Indices: 8786338--8786379 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8786328 TTTAAACATA
*
8786338 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8786353 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8786367 A-TATAATTTAATA
1 ATTATAATTAAATA
8786380 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8786466 original size:120 final size:121
Alignment explanation
Indices: 8786332--8786624 Score: 502
Period size: 120 Copynumber: 2.4 Consensus size: 121
8786322 ATCATATTTA
8786332 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
8786397 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATGTG
8786452 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
8786517 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
* * *
8786573 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
8786625 TAAAATAATT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 3 0.02
120 160 0.97
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
Found at i:8786497 original size:14 final size:15
Alignment explanation
Indices: 8786458--8786499 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8786448 AAGTAACATA
*
8786458 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8786473 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8786487 A-TATAATTTAATA
1 ATTATAATTAAATA
8786500 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8788321 original size:35 final size:35
Alignment explanation
Indices: 8788262--8788328 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
8788252 GCTACTTTTT
8788262 AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
1 AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
* * *
8788297 AAGTGACTTTAGATCAAAATTAAAATCCAAAA
1 AAGTAACTTCAGATCAAAACTAAAATCCAAAA
8788329 CAATGCTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.54, C:0.16, G:0.07, T:0.22
Consensus pattern (35 bp):
AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
Found at i:8790857 original size:129 final size:129
Alignment explanation
Indices: 8790627--8790885 Score: 518
Period size: 129 Copynumber: 2.0 Consensus size: 129
8790617 ACCGGGTGTA
8790627 TTAGGGAAGGAACAGATTTGGGACGTAATGGGAATACAACCAACCAAACAACAGATTAAGGGAGG
1 TTAGGGAAGGAACAGATTTGGGACGTAATGGGAATACAACCAACCAAACAACAGATTAAGGGAGG
8790692 ATTAAGTGGGGCCCACCGATTAGGGGTGTATTGGCATAGCCAATACACCCAACCAAACATGGTG
66 ATTAAGTGGGGCCCACCGATTAGGGGTGTATTGGCATAGCCAATACACCCAACCAAACATGGTG
8790756 TTAGGGAAGGAACAGATTTGGGACGTAATGGGAATACAACCAACCAAACAACAGATTAAGGGAGG
1 TTAGGGAAGGAACAGATTTGGGACGTAATGGGAATACAACCAACCAAACAACAGATTAAGGGAGG
8790821 ATTAAGTGGGGCCCACCGATTAGGGGTGTATTGGCATAGCCAATACACCCAACCAAACATGGTG
66 ATTAAGTGGGGCCCACCGATTAGGGGTGTATTGGCATAGCCAATACACCCAACCAAACATGGTG
8790885 T
1 T
8790886 AATATTCTGT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 130 1.00
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.18
Consensus pattern (129 bp):
TTAGGGAAGGAACAGATTTGGGACGTAATGGGAATACAACCAACCAAACAACAGATTAAGGGAGG
ATTAAGTGGGGCCCACCGATTAGGGGTGTATTGGCATAGCCAATACACCCAACCAAACATGGTG
Found at i:8792381 original size:304 final size:304
Alignment explanation
Indices: 8791517--8792433 Score: 1798
Period size: 304 Copynumber: 3.0 Consensus size: 304
8791507 TGTATGAGCA
8791517 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAGAATAAACATAATGTAAGATGCAA
1 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAGAATAAACATAATGTAAGATGCAA
8791582 AAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTTA
66 AAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTTA
8791647 TTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGTA
131 TTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGTA
*
8791712 ATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTAGACA
196 ATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTGGACA
8791777 TCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
261 TCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
8791821 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAAGAATAAACATAATGTAAGATGCA
1 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAG-AAAAAAGAATAAACATAATGTAAGATGCA
8791886 AAAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTT
65 AAAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTT
8791951 ATTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGT
130 ATTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGT
8792016 AATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTGGAC
195 AATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTGGAC
8792081 ATCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
260 ATCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
8792126 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAGAATAAACATAATGTAAGATGCAA
1 TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAGAATAAACATAATGTAAGATGCAA
8792191 AAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTTA
66 AAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTTA
*
8792256 TTTAGGGTTGTCAATGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGTA
131 TTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGTA
*
8792321 ATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGACAGCTTGGACA
196 ATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTGGACA
8792386 TCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
261 TCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
8792430 TTTA
1 TTTA
8792434 ATGTAGGAAT
Statistics
Matches: 609, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
304 306 0.50
305 303 0.50
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (304 bp):
TTTATTGATGAAACCCAAAGTTTAATAAACCTCAGAAAAAAGAATAAACATAATGTAAGATGCAA
AAGTTTTTTAGATTTTTATGTTTAATTTTCGTATGAGGATAAAAATGGTCGTTCTGGTTCGGTTA
TTTAGGGTTGTCAAGGATTTCCTTTTATATGAAACTCATTTCTTGTCAAACTCCAGAAAATGGTA
ATTATTCTTTAGCAAATGAGTTATTTCAATCAAGCCGAAAAGACTCTGCCATGGCAGCTTGGACA
TCTCTAAAACAGTGTCAGTCGAAGTTTCAGTTGTCTTTTTCCTT
Found at i:8793405 original size:28 final size:28
Alignment explanation
Indices: 8793365--8793419 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
8793355 TTTTTCAAAG
8793365 TTAGAATAGGAGATCCCGAAATCATTCA
1 TTAGAATAGGAGATCCCGAAATCATTCA
8793393 TTAGAATAGGAGATCCCGAAATCATTC
1 TTAGAATAGGAGATCCCGAAATCATTC
8793420 TCGCCTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (28 bp):
TTAGAATAGGAGATCCCGAAATCATTCA
Found at i:8796267 original size:52 final size:49
Alignment explanation
Indices: 8796182--8796548 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
8796172 TTTGAGTACT
* **
8796182 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
8796228 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
8796280 TCTGATCAAGTG---ATAAAGTGATAAGTTATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8796326 TCTGATCAAGTGAC---AAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
8796372 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8796424 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
8796476 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
8796522 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
8796549 GCTACACTTA
Statistics
Matches: 291, Mismatches: 16, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 133 0.46
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:8796530 original size:196 final size:196
Alignment explanation
Indices: 8796196--8796548 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
8796186 ATCAAGTGAT
* * *
8796196 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
* * * * *
8796261 ATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTTATAGCTTCGGCTATACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
8796326 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
8796391 G
196 G
* *
8796392 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
*
8796457 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
66 ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
8796522 TCTGATCAAGAGACAAAGTGATAAGTG
131 TCTGATCAAGAGACAAAGTGATAAGTG
8796549 GCTACACTTA
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (196 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTA
ATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
G
Found at i:8796556 original size:37 final size:37
Alignment explanation
Indices: 8796512--8796658 Score: 260
Period size: 37 Copynumber: 4.0 Consensus size: 37
8796502 GATAGCTTTA
*
8796512 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8796549 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8796586 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
8796623 GCTACACTTATCTGATCAAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
8796659 ATCATACGTA
Statistics
Matches: 107, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
36 12 0.11
37 95 0.89
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:8796585 original size:150 final size:149
Alignment explanation
Indices: 8796182--8796537 Score: 458
Period size: 150 Copynumber: 2.4 Consensus size: 149
8796172 TTTGAGTACT
* * * * *
8796182 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * *
8796247 GAAAGTGATAAGTAATAGCTTC-G---GCTATACTTATC---TGATCAAGTGATAAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGCAAACTAAACTGATCAAGTGA-CAAGTGATAAAGTGATAAG
*
8796305 TTATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
* *
8796326 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* * * * *
8796391 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA-AAAGTGATAAG
66 GAAAGTGATAACT-ATAGCTTCAGC-AAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAG
8796455 TGATAGCTTCGGCTATACTTA
129 TGATAGCTTCGGCTATACTTA
*
8796476 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAA
8796538 AGTGATAAGT
Statistics
Matches: 191, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
144 83 0.43
145 1 0.01
149 7 0.04
150 90 0.47
151 7 0.04
152 3 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (149 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
GAAAGTGATAACTATAGCTTCAGCAAACTAAACTGATCAAGTGACAAGTGATAAAGTGATAAGTG
ATAGCTTCGGCTATACTTA
Found at i:8797661 original size:20 final size:20
Alignment explanation
Indices: 8797636--8797673 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
8797626 AATAATTACA
8797636 TTTTTTATTTTTAAAATATT
1 TTTTTTATTTTTAAAATATT
8797656 TTTTTTATTTTTAAAATA
1 TTTTTTATTTTTAAAATA
8797674 AATTTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTTATTTTTAAAATATT
Found at i:8797688 original size:20 final size:20
Alignment explanation
Indices: 8797635--8797680 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8797625 TAATAATTAC
*
8797635 ATTTTTTATTTTTAAAATAT
1 ATTTTTTATTTTTAAAATAA
*
8797655 TTTTTTTATTTTTAAAATAA
1 ATTTTTTATTTTTAAAATAA
8797675 ATTTTT
1 ATTTTT
8797681 GATGTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTTTATTTTTAAAATAA
Found at i:8798018 original size:19 final size:19
Alignment explanation
Indices: 8797996--8798036 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8797986 TATTGTTAAT
*
8797996 ATTTTAAT-ATATAATATTA
1 ATTTTAATAAT-TAATAGTA
8798015 ATTTTAATAATTAATAGTA
1 ATTTTAATAATTAATAGTA
8798034 ATT
1 ATT
8798037 ATTTATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
ATTTTAATAATTAATAGTA
Found at i:8798942 original size:22 final size:22
Alignment explanation
Indices: 8798917--8798959 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8798907 TATCTAAACA
8798917 ATAACAATAAAATAATAGCAAC
1 ATAACAATAAAATAATAGCAAC
* * *
8798939 ATAATAATGAAATAGTAGCAA
1 ATAACAATAAAATAATAGCAA
8798960 AATAGTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAATAGCAAC
Found at i:8799021 original size:20 final size:20
Alignment explanation
Indices: 8798978--8799031 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
8798968 AAAAAATAAG
*
8798978 AAAATAGCAACAAAATAGAA
1 AAAATAACAACAAAATAGAA
* *
8798998 AAAATAACAATAAAATAAATA
1 AAAATAACAACAAAATAGA-A
*
8799019 AAAAAAACAACAA
1 AAAATAACAACAA
8799032 TTTTTTTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.76, C:0.09, G:0.04, T:0.11
Consensus pattern (20 bp):
AAAATAACAACAAAATAGAA
Found at i:8799281 original size:34 final size:35
Alignment explanation
Indices: 8799216--8799283 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
8799206 CTATATTTTT
* * *
8799216 TTAATAATATATTATATTAATTAATTAATTAAATG
1 TTAATAATATATTATAATAATAAAATAATTAAATG
8799251 TTAA-AATATATTATAAATAATAAAAT-ATTAAAT
1 TTAATAATATATTAT-AATAATAAAATAATTAAAT
8799284 CAATCAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (35 bp):
TTAATAATATATTATAATAATAAAATAATTAAATG
Found at i:8800352 original size:39 final size:38
Alignment explanation
Indices: 8800224--8800358 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 38
8800214 TGTTTGGATA
* * *
8800224 AAAAACGCCACTAAAAATCGAGCATTAGCGGCGCTCTTAT
1 AAAAACGCCGCTAAAAAT-AAGCATTAGCGGCGCT-TTTT
**
8800264 AAAAACGCCGCTAAAGGTAGAGCATTAGCGGCGCTTTTT
1 AAAAACGCCGCTAAAAATA-AGCATTAGCGGCGCTTTTT
* *
8800303 GGAAAACGCCGCTAAAAATAAGCATTAGTGGCG-TTTTCT
1 -AAAAACGCCGCTAAAAATAAGCATTAGCGGCGCTTTT-T
8800342 AAAAAGCGCCGC-AAAAA
1 AAAAA-CGCCGCTAAAAA
8800359 GCCAAAGCCC
Statistics
Matches: 81, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
38 13 0.16
39 22 0.27
40 46 0.57
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (38 bp):
AAAAACGCCGCTAAAAATAAGCATTAGCGGCGCTTTTT
Found at i:8800546 original size:40 final size:41
Alignment explanation
Indices: 8800394--8800551 Score: 237
Period size: 41 Copynumber: 3.9 Consensus size: 41
8800384 TGAGTTTTGG
* * *
8800394 GGCCTTTAGTGGCGTTTTTGAAGAAGCGCCGCTAATGCTCG
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* * *
8800435 GGCCTTTAGCGGCATTTTTTAAAAGGCGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
* *
8800476 GGCCTTTAGCTGCGTTTTTGAAGAAGCGCCGCTAATGCTCT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
8800517 GGCCTTTAGCGGCG-TTTTGAAAAAGCGCCGCTAAT
1 GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAT
8800552 AATAATAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 20 0.19
41 84 0.81
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (41 bp):
GGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCT
Found at i:8801068 original size:13 final size:13
Alignment explanation
Indices: 8801050--8801087 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8801040 GAAATTAGAG
8801050 TATTAATTTTAAA
1 TATTAATTTTAAA
*
8801063 TATTAATTTCAAA
1 TATTAATTTTAAA
*
8801076 TA-TAATTGTAAA
1 TATTAATTTTAAA
8801088 AGATACGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (13 bp):
TATTAATTTTAAA
Found at i:8801349 original size:15 final size:15
Alignment explanation
Indices: 8801329--8801357 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8801319 TTAAGATCAG
8801329 TTATGGATTTAGGGT
1 TTATGGATTTAGGGT
8801344 TTATGGATTTAGGG
1 TTATGGATTTAGGG
8801358 GTTAGATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (15 bp):
TTATGGATTTAGGGT
Found at i:8802249 original size:37 final size:37
Alignment explanation
Indices: 8802185--8802341 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
8802175 TACGTATGAT
*
8802185 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
8802221 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8802258 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
8802301 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8802341 C
1 C
8802342 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:8802311 original size:46 final size:46
Alignment explanation
Indices: 8802258--8802480 Score: 257
Period size: 52 Copynumber: 4.6 Consensus size: 46
8802248 TAAGTGTAGC
* *
8802258 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
8802304 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8802350 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
8802402 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8802454 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8802481 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
46 68 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 88 0.55
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:8802377 original size:52 final size:52
Alignment explanation
Indices: 8802301--8802474 Score: 267
Period size: 52 Copynumber: 3.3 Consensus size: 52
8802291 TAGCTAAAGC
* * *
8802301 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8802354 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
8802406 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8802458 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
8802475 ATCAGAAGTA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
52 94 0.84
53 18 0.16
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:8802446 original size:98 final size:98
Alignment explanation
Indices: 8802257--8802480 Score: 244
Period size: 98 Copynumber: 2.3 Consensus size: 98
8802247 ATAAGTGTAG
* * * *
8802257 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
8802322 TTGATCAGATAAGTATAGCCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAGCCGAAGCTA-AAGC-TA
* * *
8802356 TCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* * *
8802419 TTG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTA
66 TTGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTA
*
8802453 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
8802481 AGTACTCAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 69 0.66
99 16 0.15
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAGCCGAAGCTAAAGCTA
Found at i:8805660 original size:49 final size:49
Alignment explanation
Indices: 8805605--8805846 Score: 412
Period size: 49 Copynumber: 4.9 Consensus size: 49
8805595 TTCGTTTTCT
* * * * * *
8805605 CGATGCCATGGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
*
8805654 CGATGCCATAGCCCAGCTATGGTCTTACACGGAGTCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8805703 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8805752 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8805801 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCAC
8805847 ATGTTCACAT
Statistics
Matches: 184, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 179 0.97
50 5 0.03
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
Found at i:8807167 original size:37 final size:37
Alignment explanation
Indices: 8807103--8807259 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
8807093 TACGTATGAT
*
8807103 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
8807139 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8807176 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
8807219 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8807259 C
1 C
8807260 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:8807229 original size:46 final size:46
Alignment explanation
Indices: 8807176--8807398 Score: 257
Period size: 52 Copynumber: 4.6 Consensus size: 46
8807166 TAAGTGTAGC
* *
8807176 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
8807222 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8807268 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
8807320 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8807372 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8807399 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
46 68 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 88 0.55
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:8807295 original size:52 final size:52
Alignment explanation
Indices: 8807219--8807392 Score: 267
Period size: 52 Copynumber: 3.3 Consensus size: 52
8807209 TAGCTAAAGC
* * *
8807219 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8807272 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
8807324 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8807376 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
8807393 ATCAGAAGTA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
52 94 0.84
53 18 0.16
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:8807364 original size:98 final size:98
Alignment explanation
Indices: 8807175--8807398 Score: 244
Period size: 98 Copynumber: 2.3 Consensus size: 98
8807165 ATAAGTGTAG
* * * *
8807175 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
8807240 TTGATCAGATAAGTATAGCCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAGCCGAAGCTA-AAGC-TA
* * *
8807274 TCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* * *
8807337 TTG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTA
66 TTGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTA
*
8807371 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
8807399 AGTACTCAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 69 0.66
99 16 0.15
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAGCCGAAGCTAAAGCTA
Found at i:8810577 original size:49 final size:49
Alignment explanation
Indices: 8810522--8810763 Score: 421
Period size: 49 Copynumber: 4.9 Consensus size: 49
8810512 TTCGTTTTCT
* * * * *
8810522 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
*
8810571 CGATGCCATAGCCCAGCTATGGTCTTACACGGAGTCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8810620 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8810669 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
8810718 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCAC
8810764 ATGTTCACAT
Statistics
Matches: 185, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
49 180 0.97
50 5 0.03
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
Found at i:8812084 original size:37 final size:37
Alignment explanation
Indices: 8812020--8812176 Score: 199
Period size: 37 Copynumber: 4.0 Consensus size: 37
8812010 TACGTATGAT
*
8812020 CACTTATCAC-TTGTCCCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
8812056 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8812093 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T--AGC
*
8812136 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 ---CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
8812176 C
1 C
8812177 GAAGCTATCA
Statistics
Matches: 107, Mismatches: 4, Indels: 19
0.82 0.03 0.15
Matches are distributed among these distances:
36 10 0.09
37 54 0.50
39 2 0.02
40 4 0.04
41 1 0.01
42 1 0.01
43 3 0.03
44 2 0.02
46 30 0.28
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:8812146 original size:46 final size:46
Alignment explanation
Indices: 8812093--8812315 Score: 257
Period size: 52 Copynumber: 4.6 Consensus size: 46
8812083 TAAGTGTAGC
* *
8812093 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
8812139 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8812185 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
8812237 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
8812289 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8812316 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
46 68 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 88 0.55
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:8812212 original size:52 final size:52
Alignment explanation
Indices: 8812136--8812309 Score: 267
Period size: 52 Copynumber: 3.3 Consensus size: 52
8812126 TAGCTAAAGC
* * *
8812136 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8812189 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
8812241 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
8812293 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
8812310 ATCAGAAGTA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
52 94 0.84
53 18 0.16
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:8812281 original size:98 final size:98
Alignment explanation
Indices: 8812092--8812315 Score: 244
Period size: 98 Copynumber: 2.3 Consensus size: 98
8812082 ATAAGTGTAG
* * * *
8812092 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
8812157 TTGATCAGATAAGTATAGCCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAGCCGAAGCTA-AAGC-TA
* * *
8812191 TCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* * *
8812254 TTG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTA
66 TTGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTA
*
8812288 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
8812316 AGTACTCAAA
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 69 0.66
99 16 0.15
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAGCCGAAGCTAAAGCTA
Found at i:8819863 original size:43 final size:43
Alignment explanation
Indices: 8819816--8819899 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
8819806 TTATATCTTT
* * *
8819816 GATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACCAA
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
* *
8819859 GATTTACTTGATTAAGAAAATGCATTGTATGTTTTATTACC
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACC
8819900 TTGCATATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (43 bp):
GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
Found at i:8820026 original size:35 final size:34
Alignment explanation
Indices: 8819987--8820052 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
8819977 TAATTGTGTT
*
8819987 ATTAATTTATTAT-TTTAAATTCTAAATTTAAATTC
1 ATTAATTT-TTATATTT-AATTCTAAAGTTAAATTC
*
8820022 ATTAATTTTTATATTTAATTTTAAAGTTAAA
1 ATTAATTTTTATATTTAATTCTAAAGTTAAA
8820053 ATTTTCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (34 bp):
ATTAATTTTTATATTTAATTCTAAAGTTAAATTC
Found at i:8820055 original size:35 final size:35
Alignment explanation
Indices: 8819987--8820055 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
8819977 TAATTGTGTT
*
8819987 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
*
8820022 ATTAATTT-TTATATTT-AATTTTAAAGTTAAAATT
1 ATTAATTTATTAT-TTTAAATTCTAAA-TTAAAATT
8820056 TTCATAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
Found at i:8820187 original size:43 final size:43
Alignment explanation
Indices: 8820134--8820379 Score: 234
Period size: 43 Copynumber: 5.7 Consensus size: 43
8820124 GATATGTTAC
* *
8820134 TAGCGGCGTTTGTGAGAAAAGCGTCGTTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGAGCTA
* * * *
8820177 TAGCAGCGTTTATGAGAAAAGCGCCGCTAAAGGTCTTAATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGAGCTA
* * *
8820220 CAGCGGCATCTGTGTA-AAAA-CTGCCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTG-AGAAAAGC-GCCGCTAAAGGTCTTGAGCTA
* * *
8820263 TAGCGGCGTTTGTGTA-AAAAGTGCCGCTAAAGATCTTGATCTA
1 TAGCGGCGTTTGTG-AGAAAAGCGCCGCTAAAGGTCTTGAGCTA
* * *
8820306 TAGC-GCGTTTGTG-GAAAAAGTGCCGCTAAAGGTCGTTG-TCTT
1 TAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTC-TTGAGCTA
* * *
8820348 TAGTGGCGTTTGTGGGAAAAAACGCCGCTAAA
1 TAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAA
8820380 ATTAGCGACG
Statistics
Matches: 171, Mismatches: 24, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
42 34 0.20
43 121 0.71
44 16 0.09
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGAGCTA
Found at i:8820368 original size:129 final size:129
Alignment explanation
Indices: 8820134--8820379 Score: 286
Period size: 129 Copynumber: 1.9 Consensus size: 129
8820124 GATATGTTAC
* * *
8820134 TAGCGGCGTTTGTGAGAAAAGCGTCGTTAAAGGTCTTGAGCTATAGCAGCGTTTATGAGAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGATCTTGAGCTATAGCAGCGTTTATGAGAAAAGC
*
8820199 GCCGCTAAAGGTCTTAATCTACAGCGGCATCTGT-GTAAAAACTGCCGCTAAAGGTCTTGAGCTA
66 GCCGCTAAAGGTCTTAATCTACAGCGGCATCTGTGGAAAAAAC-GCCGCTAAAGGTCTTGAGCTA
* * *
8820263 TAGCGGCGTTTGTGTA-AAAAGTGCCGCTAAAGATCTTGATCTATAGC-GCGTTTGTG-GAAAAA
1 TAGCGGCGTTTGTG-AGAAAAGCGCCGCTAAAGATCTTGAGCTATAGCAGCGTTTATGAG-AAAA
* * ** * * *
8820325 GTGCCGCTAAAGGTCGTT-GTCTTTAGTGGCGTTTGTGGGAAAAAACGCCGCTAAA
64 GCGCCGCTAAAGGTC-TTAATCTACAGCGGCATCTGT-GGAAAAAACGCCGCTAAA
8820380 ATTAGCGACG
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
127 1 0.01
128 38 0.39
129 51 0.52
130 8 0.08
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (129 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGATCTTGAGCTATAGCAGCGTTTATGAGAAAAGC
GCCGCTAAAGGTCTTAATCTACAGCGGCATCTGTGGAAAAAACGCCGCTAAAGGTCTTGAGCTA
Found at i:8825527 original size:19 final size:19
Alignment explanation
Indices: 8825503--8825566 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
8825493 TTTTATTTTT
8825503 TATTTTTTTAATTTTAAAA
1 TATTTTTTTAATTTTAAAA
*
8825522 TATTTTTAAAATACATTTT----
1 TATTTTT---TTA-ATTTTAAAA
8825541 TATTTTTTTAATTTTAAAA
1 TATTTTTTTAATTTTAAAA
8825560 TATTTTT
1 TATTTTT
8825567 AAAATAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 16
0.66 0.04 0.30
Matches are distributed among these distances:
15 5 0.14
16 2 0.06
19 21 0.60
22 2 0.06
23 5 0.14
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTTTTAATTTTAAAA
Found at i:8825541 original size:13 final size:11
Alignment explanation
Indices: 8825514--8825592 Score: 52
Period size: 13 Copynumber: 6.6 Consensus size: 11
8825504 ATTTTTTTAA
8825514 TTTTAAAATAT
1 TTTTAAAATAT
8825525 TTTTAAAATACAT
1 TTTTAAAAT--AT
*** *
8825538 TTTTATTTTTT
1 TTTTAAAATAT
8825549 TAATTTTAAAATAT
1 T--TT-TAAAATAT
8825563 TTTTAAAATAATT
1 TTTTAAAAT-A-T
8825576 TTTTAAAAT-T
1 TTTTAAAATAT
8825586 TTTTAAA
1 TTTTAAA
8825593 TAAATTTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 15
0.70 0.11 0.20
Matches are distributed among these distances:
10 8 0.15
11 17 0.32
12 3 0.06
13 20 0.38
14 5 0.09
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:8825577 original size:22 final size:20
Alignment explanation
Indices: 8825511--8825600 Score: 64
Period size: 23 Copynumber: 4.3 Consensus size: 20
8825501 TTTATTTTTT
8825511 TAATTTTAAAATATTTTTAAAA
1 TAATTTTAAAAT-TTTTT-AAA
*
8825533 TACATTTT--TATTTTTT---
1 TA-ATTTTAAAATTTTTTAAA
8825549 TAATTTTAAAATATTTTTAAAA
1 TAATTTTAAAAT-TTTTT-AAA
8825571 TAATTTTTTAAAATTTTTTAAA
1 TAA--TTTTAAAATTTTTTAAA
8825593 TAAATTTT
1 T-AATTTT
8825601 TGGTATTTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 23
0.69 0.03 0.29
Matches are distributed among these distances:
15 5 0.09
16 2 0.04
17 2 0.04
18 5 0.09
20 5 0.09
21 6 0.11
22 9 0.16
23 12 0.22
24 9 0.16
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATTTTAAAATTTTTTAAA
Found at i:8825579 original size:38 final size:39
Alignment explanation
Indices: 8825497--8825580 Score: 154
Period size: 38 Copynumber: 2.2 Consensus size: 39
8825487 TAAATATTTT
8825497 ATTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 ATTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
8825536 A-TTTTTATTTTTTTAATTTTAAAATATTTTTAAAATA-
1 ATTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
8825573 ATTTTTTA
1 ATTTTTTA
8825581 AAATTTTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
37 1 0.02
38 42 0.95
39 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (39 bp):
ATTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:8825588 original size:23 final size:23
Alignment explanation
Indices: 8825552--8825601 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
8825542 ATTTTTTTAA
*
8825552 TTTTAAAATATTTTTAAAATAATT
1 TTTTAAAATATTTTT-AAATAAAT
8825576 TTTTAAAAT-TTTTTAAATAAAT
1 TTTTAAAATATTTTTAAATAAAT
8825598 TTTT
1 TTTT
8825602 GGTATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.44
23 5 0.20
24 9 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTAAAATATTTTTAAATAAAT
Found at i:8825608 original size:22 final size:22
Alignment explanation
Indices: 8825558--8825615 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8825548 TTAATTTTAA
* *
8825558 AATATTTTTAAAATAATTTTTT
1 AATATTTTTTAAATAAATTTTT
*
8825580 AAAATTTTTTAAATAAATTTTT
1 AATATTTTTTAAATAAATTTTT
**
8825602 GGTATTTATTTAAA
1 AATATTT-TTTAAA
8825616 AAACGGGCCG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 23 0.79
23 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (22 bp):
AATATTTTTTAAATAAATTTTT
Found at i:8837812 original size:23 final size:23
Alignment explanation
Indices: 8837779--8837829 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
8837769 TATTAATAGG
*
8837779 AATAAAAAAATATTA-AAGATTAA
1 AATAAAAAAATAGTAGAA-ATTAA
*
8837802 AATAAACAAATAGTAGAAATTAA
1 AATAAAAAAATAGTAGAAATTAA
8837825 AATAA
1 AATAA
8837830 TGCTTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.92
24 2 0.08
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (23 bp):
AATAAAAAAATAGTAGAAATTAA
Found at i:8847930 original size:25 final size:26
Alignment explanation
Indices: 8847896--8847948 Score: 90
Period size: 25 Copynumber: 2.0 Consensus size: 26
8847886 TAGGAAACAA
8847896 AAAAAAAAAAGAG-AAATGATAATTG
1 AAAAAAAAAAGAGAAAATGATAATTG
8847921 AAAAAAAAAAGAGACAAATGATAATTG
1 AAAAAAAAAAGAGA-AAATGATAATTG
8847948 A
1 A
8847949 GGTACTAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 13 0.50
27 13 0.50
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (26 bp):
AAAAAAAAAAGAGAAAATGATAATTG
Found at i:8847939 original size:27 final size:27
Alignment explanation
Indices: 8847894--8847948 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
8847884 CTTAGGAAAC
*
8847894 AAAAAAAAAAAAGAGAAATGATAATTG
1 AAAAAAAAAAAAGACAAATGATAATTG
*
8847921 AAAAAAAAAAGAGACAAATGATAATTG
1 AAAAAAAAAAAAGACAAATGATAATTG
8847948 A
1 A
8847949 GGTACTAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.69, C:0.02, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAAAAAAAAAAGACAAATGATAATTG
Found at i:8856745 original size:3 final size:3
Alignment explanation
Indices: 8856737--8856774 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8856727 AATTAACCAA
8856737 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8856775 CACCAGTACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8876066 original size:15 final size:17
Alignment explanation
Indices: 8876046--8876077 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
8876036 TCAAAATTGG
8876046 AAAAGGA-AAA-GAAAT
1 AAAAGGACAAATGAAAT
8876061 AAAAGGACAAATGAAAT
1 AAAAGGACAAATGAAAT
8876078 GACCCCATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.69, C:0.03, G:0.19, T:0.09
Consensus pattern (17 bp):
AAAAGGACAAATGAAAT
Found at i:8879757 original size:29 final size:29
Alignment explanation
Indices: 8879706--8879761 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
8879696 AATCTACCCC
* * *
8879706 AAAATCTTGATTTTTAAGTTATCCTCACT
1 AAAATCTTGATCTTCAAGCTATCCTCACT
*
8879735 AAAATCTTTATCTTCAAGCTATCCTCA
1 AAAATCTTGATCTTCAAGCTATCCTCA
8879762 AATGATTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.41
Consensus pattern (29 bp):
AAAATCTTGATCTTCAAGCTATCCTCACT
Found at i:8884726 original size:18 final size:18
Alignment explanation
Indices: 8884703--8884738 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8884693 GACCGTTTAT
8884703 GGCACTATTCACATATAC
1 GGCACTATTCACATATAC
*
8884721 GGCACTATTCACGTATAC
1 GGCACTATTCACATATAC
8884739 AGTACTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (18 bp):
GGCACTATTCACATATAC
Found at i:8890843 original size:18 final size:18
Alignment explanation
Indices: 8890816--8890856 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8890806 ATCGAAGAAA
* *
8890816 CATCATCCTCATCGTCCT
1 CATCACCCTCATCGTCAT
*
8890834 CATCACCCTCATTGTCAT
1 CATCACCCTCATCGTCAT
8890852 CATCA
1 CATCA
8890857 TTCTTGCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (18 bp):
CATCACCCTCATCGTCAT
Found at i:8896971 original size:14 final size:16
Alignment explanation
Indices: 8896951--8896988 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
8896941 GTAGCTGTTC
8896951 CAAAATTGGA-TAAAT
1 CAAAATTGGACTAAAT
*
8896966 -AAAATTTGACTAAAT
1 CAAAATTGGACTAAAT
8896981 CAAAATTG
1 CAAAATTG
8896989 TGCTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 8 0.42
15 5 0.26
16 6 0.32
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.29
Consensus pattern (16 bp):
CAAAATTGGACTAAAT
Found at i:8903329 original size:29 final size:30
Alignment explanation
Indices: 8903282--8903341 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
8903272 TTTTACATTT
* *
8903282 AGAATTTAGTTCTTTTACTTTT-ATTTTCA
1 AGAATTTAGTTCTTCTACTTTTCATATTCA
8903311 AGAATTTAG-TCTCTCTACTTTTCATATTCA
1 AGAATTTAGTTCT-TCTACTTTTCATATTCA
8903341 A
1 A
8903342 AAATGCAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 3 0.11
29 17 0.63
30 7 0.26
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.52
Consensus pattern (30 bp):
AGAATTTAGTTCTTCTACTTTTCATATTCA
Done.