Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 27 of 208
Found at i:10495682 original size:20 final size:20
Alignment explanation
Indices: 10495657--10495696 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
10495647 CAGAATGTCA
10495657 TAGCCCAACTATGGTCTTAC
1 TAGCCCAACTATGGTCTTAC
10495677 TAGCCCAACTATGGTCTTAC
1 TAGCCCAACTATGGTCTTAC
10495697 ATTTAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (20 bp):
TAGCCCAACTATGGTCTTAC
Found at i:10508952 original size:18 final size:18
Alignment explanation
Indices: 10508917--10508954 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10508907 TATTTATATT
10508917 TTAAAAATTAAGAATTTAA
1 TTAAAAATTAAG-ATTTAA
10508936 TTAAAAATTATAG-TTTAA
1 TTAAAAATTA-AGATTTAA
10508954 T
1 T
10508955 CATTATTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 10 0.56
20 2 0.11
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TTAAAAATTAAGATTTAA
Found at i:10521770 original size:122 final size:122
Alignment explanation
Indices: 10521581--10521820 Score: 462
Period size: 122 Copynumber: 2.0 Consensus size: 122
10521571 ATTTTCTAAC
*
10521581 AAAACTTTGATACTATCTCAATGACACTTCATGAATATTTATAAAAATATTTATGGCTCGGCTTA
1 AAAACTTTGATACTATCTCAATGACACTTCATAAATATTTATAAAAATATTTATGGCTCGGCTTA
10521646 TGAATTCGAGGCCTCGATACCTCGTTCTAGACTAGAGGTGTTCATGGGCCGGGTAGA
66 TGAATTCGAGGCCTCGATACCTCGTTCTAGACTAGAGGTGTTCATGGGCCGGGTAGA
10521703 AAAACTTTGATACTATCTCAATGACACTTCATAAATATTTATAAAAATATTTATGGCTCGGCTTA
1 AAAACTTTGATACTATCTCAATGACACTTCATAAATATTTATAAAAATATTTATGGCTCGGCTTA
*
10521768 TGAATTCGAGGTCTCGATACCTCGTTCTAGACTAGAGGTGTTCATGGGCCGGG
66 TGAATTCGAGGCCTCGATACCTCGTTCTAGACTAGAGGTGTTCATGGGCCGGG
10521821 CGGCCTGGCT
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
122 116 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (122 bp):
AAAACTTTGATACTATCTCAATGACACTTCATAAATATTTATAAAAATATTTATGGCTCGGCTTA
TGAATTCGAGGCCTCGATACCTCGTTCTAGACTAGAGGTGTTCATGGGCCGGGTAGA
Found at i:10522007 original size:11 final size:11
Alignment explanation
Indices: 10521991--10522016 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10521981 ATTTTTTAAA
10521991 TTTTAAAATAC
1 TTTTAAAATAC
10522002 TTTTAAAATAC
1 TTTTAAAATAC
10522013 TTTT
1 TTTT
10522017 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:10522019 original size:39 final size:38
Alignment explanation
Indices: 10521976--10522064 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 38
10521966 ATAATAAATA
10521976 TTTTTATTTTTTAAATTTTAAAATACTTTTAAAATACTTT
1 TTTTTATTTTTTAAATTTT-AAAT-CTTTTAAAATACTTT
* *
10522016 TTTTTAATTTTTTTAATTTTAAATTTTTTAAAATACTTT
1 TTTTT-ATTTTTTAAATTTTAAATCTTTTAAAATACTTT
*
10522055 TTTTAATTTT
1 TTTTTATTTT
10522065 AAAATATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 5 0.11
39 18 0.40
40 9 0.20
41 13 0.29
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.65
Consensus pattern (38 bp):
TTTTTATTTTTTAAATTTTAAATCTTTTAAAATACTTT
Found at i:10522074 original size:39 final size:41
Alignment explanation
Indices: 10521976--10522074 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
10521966 ATAATAAATA
* *
10521976 TTTTTATTTTTTAAAT-TTTAAAATACTTTTAAAATACTTT
1 TTTTTAATTTTTAAATATTTTAAATACTTTTAAAATACTTT
** *
10522016 TTTTTAATTTTTTTA-ATTTTAAAT-TTTTTAAAATAC-TT
1 TTTTTAATTTTTAAATATTTTAAATACTTTTAAAATACTTT
*
10522054 TTTTTAATTTTAAAATATTTT
1 TTTTTAATTTTTAAATATTTT
10522075 TTTAATTTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
38 14 0.29
39 16 0.33
40 19 0.39
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (41 bp):
TTTTTAATTTTTAAATATTTTAAATACTTTTAAAATACTTT
Found at i:10522075 original size:31 final size:30
Alignment explanation
Indices: 10522023--10522102 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 30
10522013 TTTTTTTTAA
10522023 TTTTTTTAATTTT-AAAT-TTTTTAAAATAC
1 TTTTTTTAATTTTAAAATATTTTTAAAAT-C
** *
10522052 TTTTTTTAATTTTAAAATATTTTTTTAATT
1 TTTTTTTAATTTTAAAATATTTTTAAAATC
10522082 TTTATTTTAATTTTTAAAATA
1 TTT-TTTTAA-TTTTAAAATA
10522103 AATTTTTAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 13 0.30
30 7 0.16
31 14 0.32
32 10 0.23
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATC
Found at i:10522076 original size:19 final size:20
Alignment explanation
Indices: 10522041--10522083 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
10522031 ATTTTAAATT
10522041 TTTTAAAATACTTTTTTTAA
1 TTTTAAAATACTTTTTTTAA
10522061 TTTTAAAATA-TTTTTTTAA
1 TTTTAAAATACTTTTTTTAA
10522080 TTTT
1 TTTT
10522084 TATTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTAAAATACTTTTTTTAA
Found at i:10522084 original size:20 final size:21
Alignment explanation
Indices: 10522040--10522085 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
10522030 AATTTTAAAT
10522040 TTTTTAAAATACTTTTTTTAA
1 TTTTTAAAATACTTTTTTTAA
10522061 -TTTTAAAATA-TTTTTTTAA
1 TTTTTAAAATACTTTTTTTAA
10522080 TTTTTA
1 TTTTTA
10522086 TTTTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTAAAATACTTTTTTTAA
Found at i:10522122 original size:31 final size:31
Alignment explanation
Indices: 10522047--10522120 Score: 87
Period size: 32 Copynumber: 2.4 Consensus size: 31
10522037 AATTTTTTAA
**
10522047 AATACTTT-TTTTAATTTTAAAATATTTTTTT
1 AATA-TTTATTTTAATTTTAAAATAAATTTTT
*
10522078 AATTTTTATTTTAATTTTTAAAATAAATTTTT
1 AATATTTATTTTAA-TTTTAAAATAAATTTTT
*
10522110 AGTATTTATTT
1 AATATTTATTT
10522121 AAAAAACGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
30 3 0.08
31 9 0.25
32 24 0.67
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (31 bp):
AATATTTATTTTAATTTTAAAATAAATTTTT
Found at i:10528208 original size:21 final size:21
Alignment explanation
Indices: 10528164--10528204 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10528154 CATATACGAA
* *
10528164 AAATATAACCTAAAGTAATAT
1 AAATACAACATAAAGTAATAT
10528185 AAATACAACATAAA-TAATAT
1 AAATACAACATAAAGTAATAT
10528205 TAAAAAGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATACAACATAAAGTAATAT
Found at i:10528317 original size:30 final size:30
Alignment explanation
Indices: 10528274--10528350 Score: 75
Period size: 30 Copynumber: 2.5 Consensus size: 30
10528264 ATTTAATACA
* *
10528274 TGAACTTTAATTTGGTACAATTATATATAT
1 TGAAATTTAATTTGATACAATTATATATAT
* **
10528304 TGAAATTTGATTTGATGTAATTATATATAT
1 TGAAATTTAATTTGATACAATTATATATAT
*
10528334 AT-AAAATTAATTGTGAT
1 -TGAAATTTAATT-TGAT
10528351 TCAAATGTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 33 0.87
31 5 0.13
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.47
Consensus pattern (30 bp):
TGAAATTTAATTTGATACAATTATATATAT
Found at i:10532482 original size:38 final size:39
Alignment explanation
Indices: 10532439--10532552 Score: 162
Period size: 38 Copynumber: 3.0 Consensus size: 39
10532429 TTCACTATTT
*
10532439 TGTATGAGTCATAAAAATAAGCTTGTTTGTTATGTAAAA
1 TGTATGAGTCATAAAAATAAGTTTGTTTGTTATGTAAAA
* *
10532478 -GTATGAGTTATAAAAGTAAGTTTGTTTGTTATG-AAAA
1 TGTATGAGTCATAAAAATAAGTTTGTTTGTTATGTAAAA
*
10532515 TGTACGAGTCA-AAAAAGTAAGTTTGTTTGTTATGTAAA
1 TGTATGAGTCATAAAAA-TAAGTTTGTTTGTTATGTAAA
10532553 GGAGATTCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
37 8 0.12
38 55 0.83
39 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.39
Consensus pattern (39 bp):
TGTATGAGTCATAAAAATAAGTTTGTTTGTTATGTAAAA
Found at i:10536771 original size:20 final size:20
Alignment explanation
Indices: 10536746--10536785 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
10536736 CATTTCATTT
*
10536746 ATGCAATTGCTTTATCCATA
1 ATGCAATTACTTTATCCATA
10536766 ATGCAATTACTTTATCCATA
1 ATGCAATTACTTTATCCATA
10536786 CCATATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (20 bp):
ATGCAATTACTTTATCCATA
Found at i:10537266 original size:24 final size:24
Alignment explanation
Indices: 10537221--10537267 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
10537211 TATATATACC
10537221 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
10537245 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
10537268 CCATTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:10537946 original size:13 final size:14
Alignment explanation
Indices: 10537927--10537981 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
10537917 AATTTTTCTC
10537927 TTCTTTCTTTCT-T
1 TTCTTTCTTTCTAT
*
10537940 TTTTTTCTTT-TAT
1 TTCTTTCTTTCTAT
*
10537953 TTCTTTCCTTCTCTGT
1 TTCTTT-CTT-TCTAT
10537969 TTCGTTTCTTTCT
1 TTC-TTTCTTTCT
10537982 CTTCTTCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
12 1 0.03
13 15 0.44
14 3 0.09
15 4 0.12
16 8 0.24
17 3 0.09
ACGTcount: A:0.02, C:0.22, G:0.04, T:0.73
Consensus pattern (14 bp):
TTCTTTCTTTCTAT
Found at i:10538068 original size:35 final size:36
Alignment explanation
Indices: 10538029--10538119 Score: 107
Period size: 35 Copynumber: 2.6 Consensus size: 36
10538019 TTTATCATTA
* *
10538029 TAATATAATAATATATATACT-TA-ACTTTTAACTTT
1 TAATATTATAATATATATACTATATA-TTTTAAATTT
*
10538064 TAATATTATAATAT-TATAATATATATTTTAAATTT
1 TAATATTATAATATATATACTATATATTTTAAATTT
*
10538099 AAATATTTATAATATATATAC
1 TAATA-TTATAATATATATAC
10538120 ACTTATGTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
34 5 0.11
35 28 0.60
36 10 0.21
37 4 0.09
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (36 bp):
TAATATTATAATATATATACTATATATTTTAAATTT
Found at i:10540518 original size:41 final size:41
Alignment explanation
Indices: 10540461--10540566 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
10540451 AATGAGATAA
* *
10540461 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
10540502 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
10540543 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
10540567 AATTGCCAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:10543506 original size:25 final size:25
Alignment explanation
Indices: 10543434--10543514 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
10543424 ACTTTAGCGC
* ***
10543434 GCTCTCTGATTATTAGTACGCCAGT
1 GCTCTCTGATTATTAGCACGTTGGT
10543459 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGGT
* *
10543484 GCTCTCTGATTATTAGCATGTTGTT
1 GCTCTCTGATTATTAGCACGTTGGT
10543509 GCTCTC
1 GCTCTC
10543515 CGTTTAGCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTTGGT
Found at i:10543809 original size:14 final size:14
Alignment explanation
Indices: 10543790--10543820 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
10543780 ATATATAGCA
10543790 AGTGATGAAAATTG
1 AGTGATGAAAATTG
10543804 AGTGATGAAAATTG
1 AGTGATGAAAATTG
10543818 AGT
1 AGT
10543821 ATTGTGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (14 bp):
AGTGATGAAAATTG
Found at i:10544600 original size:51 final size:51
Alignment explanation
Indices: 10544524--10544624 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
10544514 CGTGCAGCAA
* * *
10544524 CAACATTATTCAGTCCATCTGATGTTGCAAAATCACCAGCATATTCATCAG
1 CAACATTATCCACTCCATCTAATGTTGCAAAATCACCAGCATATTCATCAG
*
10544575 CAACATTATCCACTCTATCTAATGTTGCAAAATCACCAGCATATTCATCA
1 CAACATTATCCACTCCATCTAATGTTGCAAAATCACCAGCATATTCATCA
10544625 ACAATAACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.35, C:0.27, G:0.09, T:0.30
Consensus pattern (51 bp):
CAACATTATCCACTCCATCTAATGTTGCAAAATCACCAGCATATTCATCAG
Found at i:10544870 original size:33 final size:33
Alignment explanation
Indices: 10544805--10544871 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
10544795 ATCACTTTCA
* * *
10544805 CCATCAGATTCTACCCCTTCATCATCACCCTCC
1 CCATCAAATTCCACCCCTTCAACATCACCCTCC
10544838 CCATCAAATTCCACCCCTTCAACATCACCCTCC
1 CCATCAAATTCCACCCCTTCAACATCACCCTCC
10544871 C
1 C
10544872 TAGTAGTCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.24, C:0.51, G:0.01, T:0.24
Consensus pattern (33 bp):
CCATCAAATTCCACCCCTTCAACATCACCCTCC
Found at i:10545681 original size:117 final size:117
Alignment explanation
Indices: 10545472--10545682 Score: 350
Period size: 117 Copynumber: 1.8 Consensus size: 117
10545462 GGTAACAGAA
* * * * *
10545472 ATCAACATCATCGGGACCACTGTCGCATCACAAATTGACAAAACAAACCTTACATTGTGGCACTG
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
*
10545537 AAATTGCAATAATAAATAACAATTAACCATCTACAATTTTTACAACAGTTTT
66 AAATTGCAATAATAAATAACAAATAACCATCTACAATTTTTACAACAGTTTT
10545589 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
1 ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
* *
10545654 AAATTGCAATAATAAATCATAAATAACCA
66 AAATTGCAATAATAAATAACAAATAACCA
10545683 ACAAATCAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 86 1.00
ACGTcount: A:0.43, C:0.23, G:0.10, T:0.24
Consensus pattern (117 bp):
ATCAACAACATCGGGACCACTATCGCATCAAAAATCGACAAAACAAACCCTACATTGTGGCACTG
AAATTGCAATAATAAATAACAAATAACCATCTACAATTTTTACAACAGTTTT
Found at i:10545890 original size:16 final size:16
Alignment explanation
Indices: 10545869--10545913 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
10545859 GAATGCTAAT
10545869 GATTTAGGGATTTAAA
1 GATTTAGGGATTTAAA
* *
10545885 GATTTAGAGATTTGAA
1 GATTTAGGGATTTAAA
10545901 GATTTTAGGGATT
1 GA-TTTAGGGATT
10545914 CAATAAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (16 bp):
GATTTAGGGATTTAAA
Found at i:10546554 original size:18 final size:18
Alignment explanation
Indices: 10546523--10546574 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
10546513 CAAAAATTAT
*
10546523 ATAATTATATATTTTGTA
1 ATAATTTTATATTTTGTA
10546541 AT-ATTTTAATATTTTGTA
1 ATAATTTT-ATATTTTGTA
10546559 ATAAATTTTATATTTT
1 AT-AATTTTATATTTT
10546575 TTTGAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 14 0.47
19 7 0.23
20 5 0.17
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
ATAATTTTATATTTTGTA
Found at i:10552349 original size:50 final size:50
Alignment explanation
Indices: 10552245--10552434 Score: 195
Period size: 50 Copynumber: 3.7 Consensus size: 50
10552235 AAAGAGATCC
*
10552245 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCT
* *
10552301 CATGTAAGACCATGTCTGGGACATGGCGTTAGCACCGAGATGAGAGG--T
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * * **
10552349 CATTCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCT
1 CA-T-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * *
10552401 CATGTAAGACCATATTTGGGATATGGCATTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
10552435 GTAAAGGAAA
Statistics
Matches: 115, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
48 3 0.03
49 1 0.01
50 71 0.62
51 1 0.01
52 3 0.03
53 3 0.03
55 1 0.01
56 32 0.28
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
Found at i:10552735 original size:20 final size:20
Alignment explanation
Indices: 10552697--10552735 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10552687 TAAGCAAGCA
*
10552697 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
10552717 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
10552736 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:10555727 original size:17 final size:17
Alignment explanation
Indices: 10555705--10555739 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
10555695 GTGCAGTTTT
10555705 AAGCTCATGTGAGCATC
1 AAGCTCATGTGAGCATC
10555722 AAGCTCATGTGAGCATC
1 AAGCTCATGTGAGCATC
10555739 A
1 A
10555740 TGCCTATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (17 bp):
AAGCTCATGTGAGCATC
Found at i:10566680 original size:17 final size:17
Alignment explanation
Indices: 10566658--10566695 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
10566648 ATTAGGCATA
*
10566658 ATACTTTTCGT-TTATTT
1 ATACTTTT-GTATTAATT
10566675 ATACTTTTGTATTAATT
1 ATACTTTTGTATTAATT
10566692 ATAC
1 ATAC
10566696 ATTGATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (17 bp):
ATACTTTTGTATTAATT
Found at i:10568299 original size:46 final size:46
Alignment explanation
Indices: 10568200--10568647 Score: 402
Period size: 46 Copynumber: 9.6 Consensus size: 46
10568190 CTTACATATG
*
10568200 ATCACTTATCACTTGTC-C-C-TGATCAGATAAGTGTAGCT-AGGCT
1 ATCACTTATCACTT-TCTCACTTGATCAGATAAGTGTAGCTAAAGCT
* * *
10568243 ACCACTTATCACTTTCTCACTTGATTAGATAAGTGTAGCTAAGGCT
1 ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
* *
10568289 AACACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG--
1 ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
*
10568327 --CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
* * * * * **
10568371 ACCACTTATCACTTTGTCTCTTCATCAGATAAGTATAGCCGAAGCT
1 ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
**
10568417 ATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCT
1 ATCACTTATCAC-TTT--C---TCACTTGATCAGATAAGTGTAGCTAAAGCT
*
10568469 ATCACTTATCACTTTCCACTTGTCATTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTT---C---TCACTTGATCAGATAAGTGTAGCTAAAGCT
* * * * *
10568521 ATCACTTATCACATTGTCACTTGATTAGATAAGTATAGCCAAAGCT
1 ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
*
10568567 ATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTT---C---TCACTTGATCAGATAAGTGTAGCTAAAGCT
* *
10568619 ACCACTTATCACTTTGTCACTTGATCAGA
1 ATCACTTATCACTTTCTCACTTGATCAGA
10568648 AGTACTCAAA
Statistics
Matches: 342, Mismatches: 36, Indels: 51
0.80 0.08 0.12
Matches are distributed among these distances:
36 29 0.08
38 3 0.01
40 2 0.01
42 5 0.01
43 14 0.04
44 4 0.01
45 18 0.05
46 135 0.39
47 3 0.01
51 3 0.01
52 126 0.37
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
ATCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT
Found at i:10568332 original size:36 final size:36
Alignment explanation
Indices: 10568291--10568363 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
10568281 CTAAGGCTAA
10568291 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
10568327 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
10568363 C
1 C
10568364 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:10568355 original size:82 final size:82
Alignment explanation
Indices: 10568245--10568409 Score: 276
Period size: 82 Copynumber: 2.0 Consensus size: 82
10568235 GCTAGGCTAC
* *
10568245 CACTTATCACTTTCTCACTTGATTAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
*
10568310 TGATCAGATAAGTATAG
66 TCATCAGATAAGTATAG
* * *
10568327 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
10568392 TCATCAGATAAGTATAG
66 TCATCAGATAAGTATAG
10568409 C
1 C
10568410 CGAAGCTATC
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
TCATCAGATAAGTATAG
Found at i:10568401 original size:128 final size:124
Alignment explanation
Indices: 10568202--10568438 Score: 332
Period size: 128 Copynumber: 1.9 Consensus size: 124
10568192 TACATATGAT
* *
10568202 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTCTCACTTGA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTCTCACTTCA
* * *
10568267 TTAGATAAGTGTAG-CTAAGGCTAACACTTATCACTTTGTCACTTGATCAGATAAGTATAG
66 TCAGATAAGTATAGCCGAA-GCTAACACTTATCACTTT-TCACTTGATCAGATAAGTATAG
* * * *
10568327 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTCTCACT
*
10568392 TCATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTG
63 TCATCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTG
10568439 TCACTTGATC
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
125 10 0.10
126 4 0.04
127 27 0.28
128 54 0.55
129 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (124 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTCTCACTTCA
TCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTGATCAGATAAGTATAG
Found at i:10568450 original size:52 final size:52
Alignment explanation
Indices: 10568373--10568641 Score: 343
Period size: 52 Copynumber: 5.2 Consensus size: 52
10568363 CTAAAGCTAC
* * * * *
10568373 CACTTATCACTTTGTCTCTTCATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
*
10568426 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
10568478 CACTTTCCACTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
10568530 CA-----CA-TTGTCACTTGATTAGATAAGTATAGCCAAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
* * *
10568576 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
10568628 CACTTTGTCACTTG
1 CACTTT-TCACTTG
10568642 ATCAGAAGTA
Statistics
Matches: 190, Mismatches: 19, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
46 39 0.21
47 2 0.01
51 2 0.01
52 132 0.69
53 15 0.08
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTAT
Found at i:10568515 original size:98 final size:98
Alignment explanation
Indices: 10568327--10568647 Score: 404
Period size: 98 Copynumber: 3.3 Consensus size: 98
10568317 ATAAGTATAG
* * *
10568327 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTCCACTT
* * **
10568386 GTC-TCTTCATCAGATAAGTATAGCCGAAGCTAT
66 GTCAT-TTGATCAGATAAGTGTAGCTAAAGCTAT
*
10568419 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT
10568484 CCACTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAT
60 CCACTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAT
* * * *
10568523 CACTTATCACATTGTCACTTGATTAGATAAGTATAGCCAAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTCCACTT
* *
10568588 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCATTTGATCAGATAAGTGTAGCTAAAGCTAT
10568621 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10568648 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 17, Indels: 20
0.84 0.07 0.08
Matches are distributed among these distances:
92 10 0.05
95 1 0.01
98 147 0.74
100 1 0.01
104 39 0.20
105 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCATTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:10568606 original size:150 final size:150
Alignment explanation
Indices: 10568345--10568633 Score: 479
Period size: 150 Copynumber: 1.9 Consensus size: 150
10568335 ACTTTTTCAC
* *
10568345 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCTTCATCAGATAAGTATAGC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACATTGTCACTTCATCAGATAAGTATAGC
* * * *
10568410 CGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
66 CAAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACT
10568475 TATCACTTTCCACTTGTCAT
131 TATCACTTTCCACTTGTCAT
* * *
10568495 TTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACATTGTCACTTGATTAGATAAGTATAGC
1 TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACATTGTCACTTCATCAGATAAGTATAGC
* *
10568560 CAAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
66 CAAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACT
10568625 TATCACTTT
131 TATCACTTT
10568634 GTCACTTGAT
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
150 128 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.35
Consensus pattern (150 bp):
TTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACATTGTCACTTCATCAGATAAGTATAGC
CAAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTACCACT
TATCACTTTCCACTTGTCAT
Found at i:10570897 original size:48 final size:48
Alignment explanation
Indices: 10570826--10570924 Score: 180
Period size: 48 Copynumber: 2.1 Consensus size: 48
10570816 ACTCTGCTAT
10570826 AGTCATTTCTGTACATTCAATGTACTCTACGGATGGAGGAATACATAG
1 AGTCATTTCTGTACATTCAATGTACTCTACGGATGGAGGAATACATAG
* *
10570874 AGTCATTTCTGTACATTCAATGTACTCTATGGATGGAGGAATGCATAG
1 AGTCATTTCTGTACATTCAATGTACTCTACGGATGGAGGAATACATAG
10570922 AGT
1 AGT
10570925 TGAACTTAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.32
Consensus pattern (48 bp):
AGTCATTTCTGTACATTCAATGTACTCTACGGATGGAGGAATACATAG
Found at i:10585838 original size:5 final size:5
Alignment explanation
Indices: 10585828--10585853 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10585818 CCATTTTTGC
10585828 AATAT AATAT AATAT AATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT A
10585854 TATGTCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:10590896 original size:36 final size:36
Alignment explanation
Indices: 10590849--10590937 Score: 169
Period size: 36 Copynumber: 2.5 Consensus size: 36
10590839 ACCGTTTACG
10590849 GTACTATTCACGTATACGGCACTATTCACATATACA
1 GTACTATTCACGTATACGGCACTATTCACATATACA
10590885 GTACTATTCACGTATACGGCACTATTCACATATACA
1 GTACTATTCACGTATACGGCACTATTCACATATACA
*
10590921 GTACTGTTCACGTATAC
1 GTACTATTCACGTATAC
10590938 AGTAGTTGGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (36 bp):
GTACTATTCACGTATACGGCACTATTCACATATACA
Found at i:10590938 original size:18 final size:18
Alignment explanation
Indices: 10590849--10590941 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
10590839 ACCGTTTACG
*
10590849 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
10590867 GCACTATTCACATATACA
1 GTACTATTCACGTATACA
*
10590885 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
10590903 GCACTATTCACATATACA
1 GTACTATTCACGTATACA
*
10590921 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
10590939 GTA
1 GTA
10590942 GTTGGGATTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:10611550 original size:2 final size:2
Alignment explanation
Indices: 10611543--10611584 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
10611533 ACTAGAACTA
10611543 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10611585 ATTTAACAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10619364 original size:19 final size:19
Alignment explanation
Indices: 10619340--10619398 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
10619330 TCTAATTAAG
*
10619340 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
10619359 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
*
10619377 TAATAACTTTATTTTCATT
1 TAATAACTCTATTTTCATT
10619396 TAA
1 TAA
10619399 AATATAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:10619369 original size:18 final size:18
Alignment explanation
Indices: 10619348--10619382 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10619338 AGTAATAACT
*
10619348 CTATTTTAATTTAATAAA
1 CTATTCTAATTTAATAAA
*
10619366 CTATTCTCATTTAATAA
1 CTATTCTAATTTAATAA
10619383 CTTTATTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTCTAATTTAATAAA
Found at i:10619563 original size:82 final size:82
Alignment explanation
Indices: 10619469--10619623 Score: 310
Period size: 82 Copynumber: 1.9 Consensus size: 82
10619459 AATTAAAATG
10619469 GTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAGTT
1 GTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAGTT
10619534 TATGTTTCCATTATTTA
66 TATGTTTCCATTATTTA
10619551 GTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAGTT
1 GTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAGTT
10619616 TATGTTTC
66 TATGTTTC
10619624 TGTTTTTTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 73 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (82 bp):
GTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAGTT
TATGTTTCCATTATTTA
Found at i:10619775 original size:19 final size:19
Alignment explanation
Indices: 10619714--10619777 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
10619704 AATTTTTTTA
10619714 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
10619733 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
*
10619751 ACATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
10619770 AAATTAAA
1 AAATTAAA
10619778 CTATTTTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:10620197 original size:28 final size:28
Alignment explanation
Indices: 10620166--10620231 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
10620156 GTTTTTTTGT
*
10620166 ATATTTTGGTAAATAAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
10620194 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
10620222 ATATTTTGGT
1 ATATTTTGGT
10620232 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:10627583 original size:46 final size:46
Alignment explanation
Indices: 10627530--10627619 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
10627520 ATAAGAAATA
10627530 GCAAAACCACATCGTTTTGATAAATGTTTACCCATTAAGTTAAAAG
1 GCAAAACCACATCGTTTTGATAAATGTTTACCCATTAAGTTAAAAG
* * *
10627576 GCAAAACCACGTCTTTTTGATAAATGTTTACTCATTAAGTTAAA
1 GCAAAACCACATCGTTTTGATAAATGTTTACCCATTAAGTTAAA
10627620 TTATCTTCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (46 bp):
GCAAAACCACATCGTTTTGATAAATGTTTACCCATTAAGTTAAAAG
Found at i:10643972 original size:11 final size:11
Alignment explanation
Indices: 10643944--10643980 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
10643934 TTTGAGTTTT
10643944 TATTAAAATAA
1 TATTAAAATAA
*
10643955 TATTTAAAAAAA
1 TA-TTAAAATAA
10643967 TATTAAAATAA
1 TATTAAAATAA
10643978 TAT
1 TAT
10643981 CTTTCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TATTAAAATAA
Found at i:10644095 original size:23 final size:24
Alignment explanation
Indices: 10644069--10644114 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
10644059 CAAAAGAAAA
10644069 ACAAAATTG-TTTAAAAAAAATTG
1 ACAAAATTGTTTTAAAAAAAATTG
10644092 ACAAAATTGTTTTTAAAAAAAAT
1 ACAAAATTG-TTTTAAAAAAAAT
10644115 AACTAACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 9 0.43
25 12 0.57
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33
Consensus pattern (24 bp):
ACAAAATTGTTTTAAAAAAAATTG
Found at i:10644842 original size:27 final size:27
Alignment explanation
Indices: 10644744--10644841 Score: 126
Period size: 27 Copynumber: 3.6 Consensus size: 27
10644734 CCTATGGGAA
* *
10644744 AGGCGTGA-TCGGTGCTGCCTCTTTCCT
1 AGGCGTGACT-GGTGCCGCCTCTTCCCT
*
10644771 AGGCGTGACTGGTGCCGCCCCTTCCCT
1 AGGCGTGACTGGTGCCGCCTCTTCCCT
* * *
10644798 AGGAGTGACCGGTGCCGTCTCTTCCCT
1 AGGCGTGACTGGTGCCGCCTCTTCCCT
10644825 AGGCGTGACTGGTGCCG
1 AGGCGTGACTGGTGCCG
10644842 TGCTATCCCA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 60 0.98
28 1 0.02
ACGTcount: A:0.09, C:0.33, G:0.33, T:0.26
Consensus pattern (27 bp):
AGGCGTGACTGGTGCCGCCTCTTCCCT
Found at i:10644877 original size:16 final size:16
Alignment explanation
Indices: 10644874--10644934 Score: 68
Period size: 16 Copynumber: 3.7 Consensus size: 16
10644864 CATCAGTTTT
* *
10644874 GTTTTTTTTTTCATTA
1 GTTTTGTTTTTCATCA
*
10644890 GCTTTGTTTTTCATCA
1 GTTTTGTTTTTCATCA
*
10644906 GTTTTGTTTTTTTTATCA
1 GTTTTG--TTTTTCATCA
10644924 GTTTTGTTTTT
1 GTTTTGTTTTT
10644935 GTTTCAGTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
16 23 0.61
18 15 0.39
ACGTcount: A:0.10, C:0.08, G:0.11, T:0.70
Consensus pattern (16 bp):
GTTTTGTTTTTCATCA
Found at i:10644899 original size:18 final size:18
Alignment explanation
Indices: 10644859--10644934 Score: 84
Period size: 18 Copynumber: 4.2 Consensus size: 18
10644849 CCATCACTTG
10644859 TTTTTCATCAGTTTTGTTTTT
1 TTTTTCATCAGTTTTG---TT
* *
10644880 TTTTTCATTAGCTTTG--
1 TTTTTCATCAGTTTTGTT
10644896 TTTTTCATCAGTTTTGTT
1 TTTTTCATCAGTTTTGTT
*
10644914 TTTTTTATCAGTTTTGTT
1 TTTTTCATCAGTTTTGTT
10644932 TTT
1 TTT
10644935 GTTTCAGTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
16 14 0.29
18 20 0.42
21 14 0.29
ACGTcount: A:0.11, C:0.09, G:0.11, T:0.70
Consensus pattern (18 bp):
TTTTTCATCAGTTTTGTT
Found at i:10644941 original size:17 final size:18
Alignment explanation
Indices: 10644902--10644942 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
10644892 TTTGTTTTTC
*
10644902 ATCAGTTTTGTTTTTTTT
1 ATCAGTTTTGTTTTTGTT
10644920 ATCAGTTTTGTTTTTGTT
1 ATCAGTTTTGTTTTTGTT
10644938 -TCAGT
1 ATCAGT
10644943 GTCAAAGGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.12, C:0.07, G:0.15, T:0.66
Consensus pattern (18 bp):
ATCAGTTTTGTTTTTGTT
Found at i:10645388 original size:12 final size:12
Alignment explanation
Indices: 10645371--10645395 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10645361 ATTTAATTCG
10645371 AATTTAATTTTT
1 AATTTAATTTTT
10645383 AATTTAATTTTT
1 AATTTAATTTTT
10645395 A
1 A
10645396 TAAGGTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTAATTTTT
Found at i:10645657 original size:7 final size:7
Alignment explanation
Indices: 10645645--10645672 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
10645635 CATGTCAAGC
10645645 ATATTAT
1 ATATTAT
10645652 ATATTAT
1 ATATTAT
10645659 ATATTAT
1 ATATTAT
10645666 ATATTAT
1 ATATTAT
10645673 GATTACACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATATTAT
Found at i:10648033 original size:22 final size:24
Alignment explanation
Indices: 10648006--10648111 Score: 126
Period size: 25 Copynumber: 4.4 Consensus size: 24
10647996 CACTAATGAA
*
10648006 CAGAGAGCACTAAAGTGCT-ATA-
1 CAGAGAGCACTAACGTGCTAATAT
* *
10648028 CAGAGAGCACTGACGTGCTAAAAT
1 CAGAGAGCACTAACGTGCTAATAT
* * *
10648052 CAGAGAGCACCAACTTGCTAGTAGT
1 CAGAGAGCACTAACGTGCTAATA-T
10648077 CAGAGAGCACTAACGTGCTAATAAT
1 CAGAGAGCACTAACGTGCTAAT-AT
10648102 CAGAGAGCAC
1 CAGAGAGCAC
10648112 GCTAAAGTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
22 17 0.25
23 2 0.03
24 18 0.26
25 31 0.45
26 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.17
Consensus pattern (24 bp):
CAGAGAGCACTAACGTGCTAATAT
Found at i:10648573 original size:36 final size:33
Alignment explanation
Indices: 10648533--10648598 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
10648523 CTTCCTTCAC
*
10648533 TCCTTAGCCTTCTATTTTCCTTTTTCTTCAATTAGG
1 TCCTT-GCCTT-TATTTT-CTTTATCTTCAATTAGG
* *
10648569 TCCTTTCCTTTCTTTTCTTTATCTTCAATT
1 TCCTTGCCTTTATTTTCTTTATCTTCAATT
10648599 TCATATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 13 0.48
34 5 0.19
35 4 0.15
36 5 0.19
ACGTcount: A:0.12, C:0.26, G:0.05, T:0.58
Consensus pattern (33 bp):
TCCTTGCCTTTATTTTCTTTATCTTCAATTAGG
Found at i:10649270 original size:28 final size:27
Alignment explanation
Indices: 10649199--10649272 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 27
10649189 CTTTTGTTTT
*
10649199 ATATATATATAA-TAATATAATATAATA
1 ATATATATATAATTAA-ATAACATAATA
10649226 ACT-TACT-TATTAATTAAATAACATAATA
1 A-TATA-TATA-TAATTAAATAACATAATA
10649254 ATATATATATAACTTAAAT
1 ATATATATATAA-TTAAAT
10649273 TAAAAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
27 10 0.26
28 26 0.67
29 3 0.08
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (27 bp):
ATATATATATAATTAAATAACATAATA
Found at i:10649884 original size:14 final size:14
Alignment explanation
Indices: 10649858--10649893 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
10649848 GACTTTTTTT
*
10649858 TTCTAATGATACTA
1 TTCTAACGATACTA
*
10649872 TTTTAACGATACTA
1 TTCTAACGATACTA
10649886 TTCTAACG
1 TTCTAACG
10649894 TATAATTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:10654778 original size:113 final size:113
Alignment explanation
Indices: 10654655--10654878 Score: 430
Period size: 113 Copynumber: 2.0 Consensus size: 113
10654645 TTGTTCACAT
*
10654655 TGAATTTTTTTCATAATTAAAACTAAATTTTGGGACACCTATAAAACACAACTAGCCTTGTAATA
1 TGAATTTTTTTCATAAATAAAACTAAATTTTGGGACACCTATAAAACACAACTAGCCTTGTAATA
10654720 AAATAACATCATATACAAATAATATTTCTACAAATTAACACTTATCTG
66 AAATAACATCATATACAAATAATATTTCTACAAATTAACACTTATCTG
*
10654768 TGAATTTTTTTCATAAATAAAACTAAATTTTGGGACACCTATAAAACACAACTAGCCTTTTAATA
1 TGAATTTTTTTCATAAATAAAACTAAATTTTGGGACACCTATAAAACACAACTAGCCTTGTAATA
10654833 AAATAACATCATATACAAATAATATTTCTACAAATTAACACTTATC
66 AAATAACATCATATACAAATAATATTTCTACAAATTAACACTTATC
10654879 AAAAATTACA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 109 1.00
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.34
Consensus pattern (113 bp):
TGAATTTTTTTCATAAATAAAACTAAATTTTGGGACACCTATAAAACACAACTAGCCTTGTAATA
AAATAACATCATATACAAATAATATTTCTACAAATTAACACTTATCTG
Found at i:10659422 original size:24 final size:24
Alignment explanation
Indices: 10659367--10659425 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
10659357 TCAATCCCCA
* * * *
10659367 CCACCACCACCTCCACCATTAGTG
1 CCACCACCACCACCACCATCAATC
**
10659391 CCTTCACCACCACCACCATCAATC
1 CCACCACCACCACCACCATCAATC
10659415 CCACCACCACC
1 CCACCACCACC
10659426 GCTAGTTTTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.56, G:0.03, T:0.14
Consensus pattern (24 bp):
CCACCACCACCACCACCATCAATC
Found at i:10668958 original size:14 final size:15
Alignment explanation
Indices: 10668939--10668968 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10668929 CAGTACATAT
10668939 AAAAC-AAAAAACAA
1 AAAACAAAAAAACAA
10668953 AAAACAAAAAAACAA
1 AAAACAAAAAAACAA
10668968 A
1 A
10668969 CTAGAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAACAAAAAAACAA
Found at i:10668962 original size:8 final size:7
Alignment explanation
Indices: 10668939--10668968 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
10668929 CAGTACATAT
10668939 AAAACAA
1 AAAACAA
10668946 AAAACAA
1 AAAACAA
10668953 AAAACAAA
1 AAAAC-AA
10668961 AAAACAA
1 AAAACAA
10668968 A
1 A
10668969 CTAGAAGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAACAA
Found at i:10670274 original size:19 final size:20
Alignment explanation
Indices: 10670247--10670284 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10670237 TTGATAAATT
*
10670247 AAAATTTAATAATATTTTGA
1 AAAATTAAATAATATTTTGA
*
10670267 AAAATTAAATATTATTTT
1 AAAATTAAATAATATTTT
10670285 TTAAAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
AAAATTAAATAATATTTTGA
Found at i:10670290 original size:20 final size:20
Alignment explanation
Indices: 10670245--10670290 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
10670235 ATTTGATAAA
*
10670245 TTAAAATTTAATAATATTTT
1 TTAAAATTAAATAATATTTT
** *
10670265 GAAAAATTAAATATTATTTT
1 TTAAAATTAAATAATATTTT
10670285 TTAAAA
1 TTAAAA
10670291 AATAAGTATG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TTAAAATTAAATAATATTTT
Found at i:10682553 original size:105 final size:105
Alignment explanation
Indices: 10682371--10682570 Score: 382
Period size: 105 Copynumber: 1.9 Consensus size: 105
10682361 ACATACGTTT
*
10682371 ACACGCACCAAACCCATCATTACTCGTTTTCCCTCCAATATTATTGGACTTCATTTATTTTCATT
1 ACACGCACCAAACCCATCATTACTCGTTTTCCCTCCAATATTATTGGACTTCATTTACTTTCATT
10682436 GAAAAATTAAGAGCAACATAACTCTAATATTACCTTTCAA
66 GAAAAATTAAGAGCAACATAACTCTAATATTACCTTTCAA
*
10682476 ACACGCACCAAACCCATCATTACTCGTTTTCCCTCCAATATTCTTGGACTTCATTTACTTTCATT
1 ACACGCACCAAACCCATCATTACTCGTTTTCCCTCCAATATTATTGGACTTCATTTACTTTCATT
10682541 GAAAAATTAAGAGCAACATAACTCTAATAT
66 GAAAAATTAAGAGCAACATAACTCTAATAT
10682571 ATATACATTT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 93 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.34
Consensus pattern (105 bp):
ACACGCACCAAACCCATCATTACTCGTTTTCCCTCCAATATTATTGGACTTCATTTACTTTCATT
GAAAAATTAAGAGCAACATAACTCTAATATTACCTTTCAA
Found at i:10687232 original size:21 final size:22
Alignment explanation
Indices: 10687202--10687243 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
10687192 ATTTATTATA
10687202 AACTATTAAAAAATTATTTAAT
1 AACTATTAAAAAATTATTTAAT
**
10687224 AACTA-TAAAACGTTATTTAA
1 AACTATTAAAAAATTATTTAA
10687244 AAAATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (22 bp):
AACTATTAAAAAATTATTTAAT
Found at i:10687264 original size:33 final size:37
Alignment explanation
Indices: 10687227--10687294 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
10687217 ATTTAATAAC
*
10687227 TATAAAACG-TT-AT-TTAAAA-AATATATTAAAATT
1 TATAAAACGTTTCATATTAAAATAATATAATAAAATT
*
10687260 TATAAAATGTTTCATATTAAAATAATATAATAAAA
1 TATAAAACGTTTCATATTAAAATAATATAATAAAA
10687295 CCTTCGTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 8 0.28
34 2 0.07
35 2 0.07
36 6 0.21
37 11 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (37 bp):
TATAAAACGTTTCATATTAAAATAATATAATAAAATT
Found at i:10688647 original size:31 final size:32
Alignment explanation
Indices: 10688610--10688671 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
10688600 ATAATTTTAC
*
10688610 ATTAATAAGTGATATGTGAAAAATA-AATTAA
1 ATTAATAAGTGAAATGTGAAAAATATAATTAA
10688641 ATTAATAAGTGAAATGTGAAAAATATAATTA
1 ATTAATAAGTGAAATGTGAAAAATATAATTA
10688672 CTTTTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (32 bp):
ATTAATAAGTGAAATGTGAAAAATATAATTAA
Found at i:10689851 original size:21 final size:21
Alignment explanation
Indices: 10689816--10689855 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10689806 AATGTAGTAT
10689816 ACAAATTAAACATGAATCTGAA
1 ACAAATTAAACATG-ATCTGAA
*
10689838 ACAAA-TAAATATGATCTG
1 ACAAATTAAACATGATCTG
10689856 TTTATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (21 bp):
ACAAATTAAACATGATCTGAA
Found at i:10691040 original size:10 final size:10
Alignment explanation
Indices: 10690982--10691057 Score: 58
Period size: 9 Copynumber: 8.1 Consensus size: 10
10690972 AATGATATGT
*
10690982 TAATATTTAA
1 TAATTTTTAA
10690992 CTAATTTTTTAA
1 -TAA-TTTTTAA
10691004 -AATTTTTAA
1 TAATTTTTAA
*
10691013 -AA--TAT-A
1 TAATTTTTAA
10691019 TAATTTTT-A
1 TAATTTTTAA
10691028 TAATTTTTAA
1 TAATTTTTAA
10691038 TAA-TTTTAA
1 TAATTTTTAA
*
10691047 TGATTTTTAA
1 TAATTTTTAA
10691057 T
1 T
10691058 TTAAAAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
6 1 0.02
7 4 0.07
9 28 0.51
10 13 0.24
11 3 0.05
12 6 0.11
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:10691042 original size:19 final size:19
Alignment explanation
Indices: 10691018--10691057 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10691008 TTTAAAATAT
*
10691018 ATAATTTTTATAATTTTTA
1 ATAATTTTAATAATTTTTA
*
10691037 ATAATTTTAATGATTTTTA
1 ATAATTTTAATAATTTTTA
10691056 AT
1 AT
10691058 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
ATAATTTTAATAATTTTTA
Found at i:10697440 original size:18 final size:18
Alignment explanation
Indices: 10697413--10697505 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
10697403 TACGACCGTT
10697413 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
10697431 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
10697449 TACGATACTATTCACGTA
1 TACGGTACTATTCACGTA
*
10697467 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
10697485 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
10697503 TAC
1 TAC
10697506 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:10697465 original size:36 final size:36
Alignment explanation
Indices: 10697413--10697505 Score: 168
Period size: 36 Copynumber: 2.6 Consensus size: 36
10697403 TACGACCGTT
10697413 TACGGTACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
10697449 TACGATACTATTCACGTATACGGCACTATTCACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGTA
*
10697485 TACGGTACTGTTCACGTATAC
1 TACGGTACTATTCACGTATAC
10697506 AGTAGTTGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGTA
Found at i:10708545 original size:26 final size:26
Alignment explanation
Indices: 10708498--10708547 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
10708488 AGTTCTTCAT
*
10708498 TGCTTTTGAAAAGTATTTTTTAAATG
1 TGCTTTTGAAAAGTATTGTTTAAATG
10708524 TGCTTTTGAAAAGT-TTGGTTTAAA
1 TGCTTTTGAAAAGTATT-GTTTAAA
10708548 ATTTGAGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (26 bp):
TGCTTTTGAAAAGTATTGTTTAAATG
Found at i:10717364 original size:27 final size:27
Alignment explanation
Indices: 10717334--10717389 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
10717324 ATCAGATTAT
* *
10717334 GCAGCAGAAGCATCAA-CTAATGCAACA
1 GCAGCAGAAGCAGCAAGC-AAAGCAACA
*
10717361 GCAGCAGCAGCAGCAAGCAAAGCAACA
1 GCAGCAGAAGCAGCAAGCAAAGCAACA
10717388 GC
1 GC
10717390 TGCCCACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.43, C:0.29, G:0.23, T:0.05
Consensus pattern (27 bp):
GCAGCAGAAGCAGCAAGCAAAGCAACA
Found at i:10723636 original size:3 final size:3
Alignment explanation
Indices: 10723630--10723655 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10723620 ATAAATAATA
10723630 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
10723656 TAGGCCTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:10732352 original size:46 final size:46
Alignment explanation
Indices: 10732252--10732615 Score: 346
Period size: 46 Copynumber: 8.6 Consensus size: 46
10732242 TACATATGAT
*
10732252 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
10732295 CACTTATCACTTTGTCACTTGATCAGATAAGAGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10732341 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
10732387 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10732423 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCT--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10732467 -A---A-CAC-TTATCACTTGATCAGATAAGTGT-G--ACA--CTTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-AGGC-TAC
* *
10732504 CACTTTTTCAC--T------TGATCAGATAAGTGTAGCTAATGCTAC
1 CAC-TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
10732543 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
10732589 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10732616 AGTACTCAAA
Statistics
Matches: 275, Mismatches: 12, Indels: 65
0.78 0.03 0.18
Matches are distributed among these distances:
34 1 0.00
35 2 0.01
36 45 0.16
37 2 0.01
38 33 0.12
39 9 0.03
40 5 0.02
41 2 0.01
42 3 0.01
43 14 0.05
44 8 0.03
45 19 0.07
46 132 0.48
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:10732428 original size:36 final size:36
Alignment explanation
Indices: 10732387--10732533 Score: 192
Period size: 36 Copynumber: 4.0 Consensus size: 36
10732377 CTAAGGCTAA
* *
10732387 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
10732423 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
* *
10732459 CTAAAGC-TAACAC-TTATCACTTGATCAGATAAGTGT-G
1 C---A-CTTATCACTTTTTCACTTGATCAGATAAGTGTAG
10732496 ACACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 -CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
10732533 C
1 C
10732534 TAATGCTACC
Statistics
Matches: 97, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
34 1 0.01
35 6 0.06
36 58 0.60
37 2 0.02
38 23 0.24
39 6 0.06
40 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
Found at i:10732478 original size:82 final size:81
Alignment explanation
Indices: 10732341--10732579 Score: 350
Period size: 82 Copynumber: 3.0 Consensus size: 81
10732331 CTAAGGCTAC
* *
10732341 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTT-TCACT
*
10732406 TGATCAGATAAGTATAG
65 TGATCAGATAAGTGTAG
10732423 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACAC-T-T-A----TCACTT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTTCACTT
10732481 GATCAGATAAGTGT-G
66 GATCAGATAAGTGTAG
* *
10732496 ACACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTCTCAC
1 -CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTT-TCAC
10732561 TTGATCAGATAAGTGTAG
64 TTGATCAGATAAGTGTAG
10732579 C
1 C
10732580 TAATGCTACC
Statistics
Matches: 142, Mismatches: 5, Indels: 20
0.85 0.03 0.12
Matches are distributed among these distances:
73 1 0.01
74 66 0.46
75 1 0.01
76 1 0.01
77 1 0.01
79 1 0.01
80 1 0.01
81 1 0.01
82 68 0.48
83 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (81 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTTCACTT
GATCAGATAAGTGTAG
Found at i:10732479 original size:74 final size:74
Alignment explanation
Indices: 10732341--10732554 Score: 295
Period size: 74 Copynumber: 2.8 Consensus size: 74
10732331 CTAAGGCTAC
* *
10732341 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACAC-T-T-A-----TCACT
10732406 TGATCAGATAAGTAT-A
58 TGATCAGATAAGTATGA
10732422 GCACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTGATCAG
1 -CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTGATCAG
*
10732487 ATAAGTGTGA
65 ATAAGTATGA
* *
10732497 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTT
10732555 TCTCACTTGA
Statistics
Matches: 126, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
74 75 0.60
75 1 0.01
79 1 0.01
80 1 0.01
81 1 0.01
82 47 0.37
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (74 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTGATCAGA
TAAGTATGA
Found at i:10737477 original size:22 final size:23
Alignment explanation
Indices: 10737446--10737502 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
10737436 CTTAATTCGA
* *
10737446 TTTTAGTTAAATTTAA-CATTAT
1 TTTTATTTAAATTTAATCATAAT
10737468 TTTTATTTAAATTTAATCATAAT
1 TTTTATTTAAATTTAATCATAAT
*
10737491 TATTTTTTTAAA
1 T-TTTATTTAAA
10737503 AATCACTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 15 0.50
23 6 0.20
24 9 0.30
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTATTTAAATTTAATCATAAT
Found at i:10738787 original size:31 final size:31
Alignment explanation
Indices: 10738747--10738823 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
10738737 ATTATATTAT
* *
10738747 AAAAC-AAAGAAATAAAA-GAAATAGAAATAG
1 AAAACGAAAGAAATAAAACGAAACAG-AAGAG
* *
10738777 AAAACGAAAGAAAGAAAACGAAACAGAAGGG
1 AAAACGAAAGAAATAAAACGAAACAGAAGAG
*
10738808 AAAAAGAAAGAAATAA
1 AAAACGAAAGAAATAA
10738824 GGAGAAAGAC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 5 0.13
31 28 0.72
32 6 0.15
ACGTcount: A:0.71, C:0.05, G:0.18, T:0.05
Consensus pattern (31 bp):
AAAACGAAAGAAATAAAACGAAACAGAAGAG
Found at i:10746261 original size:190 final size:190
Alignment explanation
Indices: 10745938--10746317 Score: 733
Period size: 190 Copynumber: 2.0 Consensus size: 190
10745928 GTGAATGTCA
10745938 ACTTAAGTAAGCTTTTTGTTATATTGTGGTGCAAGTCTCGATAGATTTGTTTGGCTCAATAATTC
1 ACTTAAGTAAGCTTTTTGTTATATTGTGGTGCAAGTCTCGATAGATTTGTTTGGCTCAATAATTC
10746003 ACTTATCGTGAGAGGTGGTAGGTTCGTCACAAAATGAATAGCATGGACATGTATAAAGACTCATT
66 ACTTATCGTGAGAGGTGGTAGGTTCGTCACAAAATGAATAGCATGGACATGTATAAAGACTCATT
* *
10746068 GTGGAGGTATAACCTATATTTAAAAAAACAAATAGAAAAACATTTTAAAAAGTTTTGTAC
131 GTGGAGGTATAACCAAAATTTAAAAAAACAAATAGAAAAACATTTTAAAAAGTTTTGTAC
10746128 ACTTAAGTAAGCTTTTTGTTATATTGTGGTGCAAGTCTCGATAGATTTGTTTGGCTCAATAATTC
1 ACTTAAGTAAGCTTTTTGTTATATTGTGGTGCAAGTCTCGATAGATTTGTTTGGCTCAATAATTC
*
10746193 ACTTATCGTGAGAGGTGGTAGGTTCGTCACAAAATGAATCGCATGGACATGTATAAAGACTCATT
66 ACTTATCGTGAGAGGTGGTAGGTTCGTCACAAAATGAATAGCATGGACATGTATAAAGACTCATT
10746258 GTGGAGGTATAACCAAAATTTAAAAAAACAAATAGAAAAACATTTTAAAAAGTTTTGTAC
131 GTGGAGGTATAACCAAAATTTAAAAAAACAAATAGAAAAACATTTTAAAAAGTTTTGTAC
10746318 CAAAAGTGAC
Statistics
Matches: 187, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
190 187 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (190 bp):
ACTTAAGTAAGCTTTTTGTTATATTGTGGTGCAAGTCTCGATAGATTTGTTTGGCTCAATAATTC
ACTTATCGTGAGAGGTGGTAGGTTCGTCACAAAATGAATAGCATGGACATGTATAAAGACTCATT
GTGGAGGTATAACCAAAATTTAAAAAAACAAATAGAAAAACATTTTAAAAAGTTTTGTAC
Found at i:10747293 original size:21 final size:21
Alignment explanation
Indices: 10747267--10747312 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
10747257 TGGTCGATGA
* *
10747267 AAAAAAGTAAATATAAATTGT
1 AAAAAAGTAAAAATAAATTAT
*
10747288 AAAAAAGTAAAAATATATTAT
1 AAAAAAGTAAAAATAAATTAT
10747309 AAAA
1 AAAA
10747313 CTTTAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAAAAGTAAAAATAAATTAT
Found at i:10762560 original size:18 final size:19
Alignment explanation
Indices: 10762529--10762566 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
10762519 GCTTTTGGTA
**
10762529 ACACCATCTTCAA-TTAGT
1 ACACCATCGCCAATTTAGT
10762547 ACACCATCGCCAATTTAGT
1 ACACCATCGCCAATTTAGT
10762566 A
1 A
10762567 TGCATTGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (19 bp):
ACACCATCGCCAATTTAGT
Found at i:10769487 original size:21 final size:20
Alignment explanation
Indices: 10769456--10769496 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
10769446 ATTTTTTTTA
10769456 AAATAATAAAATCATA-AACT
1 AAATAATAAAAT-ATATAACT
10769476 AAATAATAAAAATATATAACT
1 AAATAAT-AAAATATATAACT
10769497 TTAACTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
AAATAATAAAATATATAACT
Found at i:10770371 original size:27 final size:27
Alignment explanation
Indices: 10770327--10770399 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
10770317 GGACATTATG
* *
10770327 CCTATTTGATGGGCGGCACCAGTGACC
1 CCTATTTGATAGGTGGCACCAGTGACC
** ***
10770354 CCTATTTGATAGGTGGCATTAGTGGTG
1 CCTATTTGATAGGTGGCACCAGTGACC
10770381 CCTATTTGATAGGTGGCAC
1 CCTATTTGATAGGTGGCAC
10770400 AACTAGTATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (27 bp):
CCTATTTGATAGGTGGCACCAGTGACC
Found at i:10771162 original size:29 final size:28
Alignment explanation
Indices: 10771129--10771222 Score: 85
Period size: 29 Copynumber: 3.5 Consensus size: 28
10771119 AAATAAAATA
10771129 TTATTTGCACATAACATAAATAGACTTTT
1 TTATTT-CACATAACATAAATAGACTTTT
*
10771158 TTATTTCA-ATAAACATTAAA-A-A---TA
1 TTATTTCACAT-AACA-TAAATAGACTTTT
10771182 TTATTTACACATAACATAAATAGACTTTT
1 TTATTT-CACATAACATAAATAGACTTTT
*
10771211 TTACTTCA-ATAA
1 TTATTTCACATAA
10771223 ACATTAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
24 11 0.21
25 7 0.13
26 3 0.06
27 7 0.13
28 9 0.17
29 16 0.30
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.40
Consensus pattern (28 bp):
TTATTTCACATAACATAAATAGACTTTT
Found at i:10771193 original size:53 final size:53
Alignment explanation
Indices: 10771123--10771234 Score: 206
Period size: 53 Copynumber: 2.1 Consensus size: 53
10771113 TATAAAAAAT
* *
10771123 AAAATATTATTTGCACATAACATAAATAGACTTTTTTATTTCAATAAACATTA
1 AAAATATTATTTACACATAACATAAATAGACTTTTTTACTTCAATAAACATTA
10771176 AAAATATTATTTACACATAACATAAATAGACTTTTTTACTTCAATAAACATTA
1 AAAATATTATTTACACATAACATAAATAGACTTTTTTACTTCAATAAACATTA
10771229 AAAATA
1 AAAATA
10771235 AATTATTAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.38
Consensus pattern (53 bp):
AAAATATTATTTACACATAACATAAATAGACTTTTTTACTTCAATAAACATTA
Found at i:10771201 original size:24 final size:23
Alignment explanation
Indices: 10771123--10771201 Score: 61
Period size: 24 Copynumber: 3.1 Consensus size: 23
10771113 TATAAAAAAT
10771123 AAAATATTATTTGCACATAACATA
1 AAAATATTATTT-CACATAACATA
*
10771147 AATAGACTTTTTTATTTCA-ATAAACATTA
1 AA-A-A---TATTATTTCACAT-AACA-TA
10771176 AAAATATTATTTACACATAACATA
1 AAAATATTATTT-CACATAACATA
10771200 AA
1 AA
10771202 TAGACTTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 18
0.69 0.03 0.28
Matches are distributed among these distances:
24 13 0.30
25 7 0.16
26 3 0.07
27 3 0.07
28 7 0.16
29 11 0.25
ACGTcount: A:0.49, C:0.11, G:0.03, T:0.37
Consensus pattern (23 bp):
AAAATATTATTTCACATAACATA
Found at i:10771213 original size:25 final size:25
Alignment explanation
Indices: 10771136--10771214 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 25
10771126 ATATTATTTG
10771136 CACATAACATAAATAGACTTTTTTA
1 CACATAACATAAATAGACTTTTTTA
* * *
10771161 TTTCA-ATAAACATTAAAAATA-TTATTTA
1 ---CACAT-AACA-TAAATAGACTTTTTTA
10771189 CACATAACATAAATAGACTTTTTTA
1 CACATAACATAAATAGACTTTTTTA
10771214 C
1 C
10771215 TTCAATAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
24 6 0.15
25 13 0.32
26 2 0.05
27 2 0.05
28 12 0.29
29 6 0.15
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.38
Consensus pattern (25 bp):
CACATAACATAAATAGACTTTTTTA
Found at i:10778278 original size:20 final size:20
Alignment explanation
Indices: 10778244--10778291 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
10778234 ATTTTATATT
10778244 AATATTTTAATAATAAACATA
1 AATATTTTAATAATAAA-ATA
*
10778265 AATATTTT-ATAATATAATA
1 AATATTTTAATAATAAAATA
10778284 AAGTATTT
1 AA-TATTT
10778292 ACTTAAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 5 0.20
20 12 0.48
21 8 0.32
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
AATATTTTAATAATAAAATA
Found at i:10781451 original size:21 final size:21
Alignment explanation
Indices: 10781425--10781483 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
10781415 TAAGATGTTT
10781425 AAAAATCAAATAAATTGATTA
1 AAAAATCAAATAAATTGATTA
*
10781446 AAAAAT-AAATCTAATTGA--A
1 AAAAATCAAAT-AAATTGATTA
*
10781465 AATAA-C-AATAAATTGATTA
1 AAAAATCAAATAAATTGATTA
10781484 TAAATTAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
17 6 0.19
18 3 0.10
19 6 0.19
20 4 0.13
21 12 0.39
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAAATCAAATAAATTGATTA
Found at i:10794566 original size:112 final size:111
Alignment explanation
Indices: 10794369--10794597 Score: 361
Period size: 112 Copynumber: 2.0 Consensus size: 111
10794359 AATATTTGAG
10794369 TATACAATTATAGATGGACCATAAGGAACCATACATATTGACTAATAAAAACATTGCATGTTTTG
1 TATACAATTATAGATGGACCATAAGGAACCATACA-ATTGACTAATAAAAACATTGCATGTTTTG
* * * *
10794434 AAGATAAATTAGACCACACTTTAGAGCTTATTGTATGTCTTTTGCTT
65 AAGATAAACTAAACCACACTTTAGAGCTTATTATATGTCTTATGCTT
10794481 TATACATATATATAGATGGACCATAAGGAACCATAC-ATTGACTAATAAAAACATTGCATGTTTT
1 TATACA-AT-TATAGATGGACCATAAGGAACCATACAATTGACTAATAAAAACATTGCATGTTTT
* * *
10794545 GTAGATAAACTAAACCACACTTTGGAGTTTATTATATGTCTTATGCTT
64 GAAGATAAACTAAACCACACTTTAGAGCTTATTATATGTCTTATGCTT
10794593 TATAC
1 TATAC
10794598 TGCAGTTTAC
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
112 80 0.74
113 2 0.02
114 26 0.24
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (111 bp):
TATACAATTATAGATGGACCATAAGGAACCATACAATTGACTAATAAAAACATTGCATGTTTTGA
AGATAAACTAAACCACACTTTAGAGCTTATTATATGTCTTATGCTT
Found at i:10798270 original size:11 final size:9
Alignment explanation
Indices: 10798233--10798275 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
10798223 ACATGTGGTG
10798233 AAAAATGAT-
1 AAAAAT-ATA
10798242 AAAAATATA
1 AAAAATATA
10798251 AAAAATATA
1 AAAAATATA
*
10798260 AAAAATTTA
1 AAAAATATA
*
10798269 TAAAATA
1 AAAAATA
10798276 CTTCTGTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
8 2 0.07
9 28 0.93
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (9 bp):
AAAAATATA
Found at i:10798392 original size:9 final size:9
Alignment explanation
Indices: 10798290--10798405 Score: 53
Period size: 10 Copynumber: 12.3 Consensus size: 9
10798280 TGTTGGTACG
10798290 ATAATTTTT
1 ATAATTTTT
*
10798299 ATATTTCTTT
1 ATAATT-TTT
10798309 AT-ATTTTT
1 ATAATTTTT
10798317 ATAATTTTATT
1 ATAA-TTT-TT
* *
10798328 ACGAATTTAT
1 A-TAATTTTT
*
10798338 A-AAATTTT
1 ATAATTTTT
10798346 ATAAATTTTTT
1 AT-AA-TTTTT
* *
10798357 CTACATTTCT
1 ATA-ATTTTT
10798367 ATATATTTTCT
1 ATA-ATTTT-T
10798378 AT--TTTTT
1 ATAATTTTT
10798385 ATAATTTTT
1 ATAATTTTT
10798394 A-ATATTTTT
1 ATA-ATTTTT
10798403 ATA
1 ATA
10798406 TTCTTTTATT
Statistics
Matches: 81, Mismatches: 12, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
7 3 0.04
8 16 0.20
9 21 0.26
10 24 0.30
11 15 0.19
12 2 0.02
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:10798398 original size:28 final size:27
Alignment explanation
Indices: 10798341--10798414 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 27
10798331 AATTTATAAA
* *
10798341 ATTTTATAAATTTTTTCTACATTTCTAT
1 ATTTT-TATATTTTTTATACATTTCTAT
* *
10798369 ATATTTTCTATTTTTTATA-ATTTTTAAT
1 AT-TTTTATATTTTTTATACATTTCT-AT
10798397 ATTTTTATATTCTTTTAT
1 ATTTTTATATT-TTTTAT
10798415 TAAAATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 13 0.34
28 22 0.58
29 3 0.08
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (27 bp):
ATTTTTATATTTTTTATACATTTCTAT
Found at i:10798613 original size:18 final size:18
Alignment explanation
Indices: 10798587--10798622 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10798577 TTAGTGTAAA
* *
10798587 AAAATAGGGCTTTAATTG
1 AAAAGAGGGCCTTAATTG
10798605 AAAAGAGGGCCTTAATTG
1 AAAAGAGGGCCTTAATTG
10798623 TTTTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (18 bp):
AAAAGAGGGCCTTAATTG
Found at i:10806574 original size:31 final size:31
Alignment explanation
Indices: 10806539--10806606 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
10806529 TTAATAGCCC
*
10806539 AGTGATTTAAAT-AAAAATTTCCGAATAATTT
1 AGTGATTTAAATGAAAAATTT-CAAATAATTT
* *
10806570 AGTGACTTAAATGAAAACTTTCAAATAATTT
1 AGTGATTTAAATGAAAAATTTCAAATAATTT
*
10806601 AATGAT
1 AGTGAT
10806607 CAAATTATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 24 0.77
32 7 0.23
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (31 bp):
AGTGATTTAAATGAAAAATTTCAAATAATTT
Found at i:10809365 original size:46 final size:46
Alignment explanation
Indices: 10809309--10809400 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
10809299 AAAATATTCT
*
10809309 CTATGAACTATAAAATAAATATGAAAG-TCACCTTCATTCTAAAGAA
1 CTATGAACTATAAAATAAATATAAAAGAT-ACCTTCATTCTAAAGAA
* * *
10809355 CTATGGACTATAAAATAGATATAAAAGATACCTTTATTCTAAAGAA
1 CTATGAACTATAAAATAAATATAAAAGATACCTTCATTCTAAAGAA
10809401 ATTTGATGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 40 0.98
47 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (46 bp):
CTATGAACTATAAAATAAATATAAAAGATACCTTCATTCTAAAGAA
Found at i:10813614 original size:183 final size:183
Alignment explanation
Indices: 10813294--10813663 Score: 551
Period size: 183 Copynumber: 2.0 Consensus size: 183
10813284 CAAATGGCAC
*
10813294 AAATTGTCCCATAAACCCATTCTGTCTTCTAAGGGGATCTTTGGCTGATTTGAAGTCTCAACTAC
1 AAATTGTCCCATAAACCCATTCTGTCTTCTAAGGGGACCTTTGGCTGATTTGAAGTCTCAACTAC
* * * * *
10813359 ATCCTGAGACCTGACAGACTGAGTAACAGGCCCCTTTCGCAACGCTTGCTGCTCTTCGAACTCAC
66 ATCCTGAAACCTGACAGACTGAGTAACAGACCCCTTTCGCAACCCTTGCAGCTCTTCAAACTCAC
* *
10813424 AGAGGGCATATTGAATTCCTTGGCCATGTTCCAAACTATCACTAGTCTTTGAT
131 AGAGGGCATATTGAATTCCTTGGCCATATTCCAAACTATCACTAGTCTTTAAT
* *** *
10813477 AAATTGTCCCATGAACTGGTTCTGTCTTCTAAGGGGACCTTTGGTTGATTTGAAGTCTCAACTAC
1 AAATTGTCCCATAAACCCATTCTGTCTTCTAAGGGGACCTTTGGCTGATTTGAAGTCTCAACTAC
* * * *
10813542 ATCTTGAAACCTGGCAGACTGAGTAACAGACCCCTTTTGCAACCCTTGCAGCTCTTCAAACTCGC
66 ATCCTGAAACCTGACAGACTGAGTAACAGACCCCTTTCGCAACCCTTGCAGCTCTTCAAACTCAC
* ** *
10813607 TGAGGGCATATTGAATTCCTTGGCCATATTCTGAGCTATCACTAGTCTTTAAT
131 AGAGGGCATATTGAATTCCTTGGCCATATTCCAAACTATCACTAGTCTTTAAT
10813660 AAAT
1 AAAT
10813664 GACTGATTCT
Statistics
Matches: 166, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
183 166 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (183 bp):
AAATTGTCCCATAAACCCATTCTGTCTTCTAAGGGGACCTTTGGCTGATTTGAAGTCTCAACTAC
ATCCTGAAACCTGACAGACTGAGTAACAGACCCCTTTCGCAACCCTTGCAGCTCTTCAAACTCAC
AGAGGGCATATTGAATTCCTTGGCCATATTCCAAACTATCACTAGTCTTTAAT
Found at i:10822833 original size:64 final size:64
Alignment explanation
Indices: 10822732--10822856 Score: 205
Period size: 64 Copynumber: 2.0 Consensus size: 64
10822722 CATCCCGATT
* * * **
10822732 GGTATTGATCCTGCATGTGTTGCGGACATACCGCAGCTCTTTGTGAGTGTCTTGATATATGATC
1 GGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCGTCCCGATATATGATC
10822796 GGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCGTCCCGATATATG
1 GGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCGTCCCGATATATG
10822857 GCTCTTCATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.34
Consensus pattern (64 bp):
GGTATTGATCCTGCATGTATTGCGGACATACCGCAGCTCTTTATGAGCGTCCCGATATATGATC
Found at i:10825369 original size:25 final size:25
Alignment explanation
Indices: 10825313--10825361 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
10825303 GTTTCCTGTT
* * *
10825313 ATAGCCCAGATAAGCTTCATGTTAC
1 ATAGCTCACATAAGCTTCATATTAC
*
10825338 ATAGCTCACATAAGCTTCCTATTA
1 ATAGCTCACATAAGCTTCATATTA
10825362 TATGGCTCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (25 bp):
ATAGCTCACATAAGCTTCATATTAC
Found at i:10828242 original size:21 final size:21
Alignment explanation
Indices: 10828208--10828248 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10828198 AATTTAACAC
* *
10828208 CAATTTAATACAAGTTACATT
1 CAATTCAATACAAGTCACATT
*
10828229 CAATTCAATCCAAGTCACAT
1 CAATTCAATACAAGTCACAT
10828249 CTTAGGCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (21 bp):
CAATTCAATACAAGTCACATT
Found at i:10836334 original size:24 final size:23
Alignment explanation
Indices: 10836307--10836351 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
10836297 TAATAAAATT
10836307 TATTTATATTAT-TTTTAGAAAAAA
1 TATTT-TATTATGTTTTA-AAAAAA
*
10836331 TATTTTTTTATGTTTTAAAAA
1 TATTTTATTATGTTTTAAAAA
10836352 TAGGAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
TATTTTATTATGTTTTAAAAAAA
Found at i:10874873 original size:38 final size:39
Alignment explanation
Indices: 10874795--10874874 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
10874785 TGATCTTAAA
** *
10874795 TTAAAAATATATAAAAATACATAAATATTTTGAATAATT
1 TTAAAAATATATAAAAATACATAAATATCATAAATAATT
*
10874834 TTAAAATATATATAAAAATA-A-AAATATGCATAAATATTT
1 TTAAAA-ATATATAAAAATACATAAATAT-CATAAATAATT
10874873 TT
1 TT
10874875 GTTATAACTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
38 6 0.17
39 16 0.46
40 13 0.37
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (39 bp):
TTAAAAATATATAAAAATACATAAATATCATAAATAATT
Found at i:10875435 original size:25 final size:24
Alignment explanation
Indices: 10875407--10875464 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 24
10875397 AATAAATATT
10875407 TATTTTTTAATTTTTAATTTT-AAAA
1 TATTTTTT-ATTTTT-ATTTTAAAAA
10875432 TATTTTTTATTTTTATTTTAAAAA
1 TATTTTTTATTTTTATTTTAAAAA
10875456 TAATTTTTT
1 T-ATTTTTT
10875465 GGTGTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.16
24 11 0.35
25 15 0.48
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTTTTATTTTTATTTTAAAAA
Found at i:10886551 original size:62 final size:56
Alignment explanation
Indices: 10886476--10886616 Score: 156
Period size: 57 Copynumber: 2.4 Consensus size: 56
10886466 AATTGACGGT
* *
10886476 AAAAAGAATCTAGCCCGGACGGGTGATCCTATCTTGATATAGCCTTCCTGAAGAATACGTGTG
1 AAAAAG-ATCTAGCCCGGACGGGTG-----ATCTTGATATAGCCCTCCCGAAGAATACGTG-G
* *
10886539 AAAAAGATCTAGCCCGGACAGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATACGTGG
* *
10886595 AAAATGGATTTAGCCCGGACGG
1 AAAA-AGATCTAGCCCGGACGG
10886617 TAATCGGAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
56 5 0.07
57 42 0.60
62 17 0.24
63 6 0.09
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (56 bp):
AAAAAGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATACGTGG
Found at i:10886587 original size:57 final size:57
Alignment explanation
Indices: 10886506--10886614 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
10886496 GGGTGATCCT
* *
10886506 ATCTTGATATAGCCTTCCTGAAGAATACGTGTGAAAA-AGATCTAGCCCGGACAGGTG
1 ATCTTGATATAGCCCTCCCGAAGAATACGTG-GAAAATAGATCTAGCCCGGACAGGTG
* * *
10886563 ATCTTGATATAGCCCTCCCGAAGAATATGTGGAAAATGGATTTAGCCCGGAC
1 ATCTTGATATAGCCCTCCCGAAGAATACGTGGAAAATAGATCTAGCCCGGAC
10886615 GGTAATCGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 5 0.11
57 41 0.89
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (57 bp):
ATCTTGATATAGCCCTCCCGAAGAATACGTGGAAAATAGATCTAGCCCGGACAGGTG
Found at i:10886867 original size:67 final size:67
Alignment explanation
Indices: 10886744--10886874 Score: 208
Period size: 67 Copynumber: 2.0 Consensus size: 67
10886734 GTTTATATTA
* * *
10886744 CAGGGGATTTAGCCTAGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGTGGGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTAGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGCGCTCTCT
10886809 TG
66 TG
* * *
10886811 CAGGGGATTTAGCCTGGACTGGTAATCTCGCTGTAAGAAATGAGGTTTGCGAGAGTGCGCTCTC
1 CAGGGGATTTAGCCTAGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGCGCTCTC
10886875 CGAATTGAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.27
Consensus pattern (67 bp):
CAGGGGATTTAGCCTAGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGAGAGTGCGCTCTCT
TG
Found at i:10900597 original size:13 final size:13
Alignment explanation
Indices: 10900570--10900617 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
10900560 ACACTCAAAT
**
10900570 TTTTCAAAAGCAC
1 TTTTCAAAAATAC
*
10900583 TTCTCAAAAATAC
1 TTTTCAAAAATAC
* *
10900596 TTTTCCACAATAC
1 TTTTCAAAAATAC
10900609 TTTTCAAAA
1 TTTTCAAAA
10900618 GCAATGACCC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (13 bp):
TTTTCAAAAATAC
Found at i:10907709 original size:4 final size:4
Alignment explanation
Indices: 10907700--10907728 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
10907690 AACATATCTG
10907700 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA T
10907729 TATTTGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:10911843 original size:114 final size:111
Alignment explanation
Indices: 10911530--10912196 Score: 572
Period size: 114 Copynumber: 5.9 Consensus size: 111
10911520 TTACCACAAT
* * * * * * *
10911530 GCGCCGCGAAATCTCTTAACCAAAACGC-TGTGTTTTCGTCTTGATGTATCTTAAAAGTAGTGGC
1 GCGCCGCAAAATATCTTAA-CAAAACGCAT-AGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGC
* * ** * * *
10911594 GTTTACGCG-AAACGCCATTAAAGGACAGTAATAGCGGCGCTTTCTGGAA
63 GCTTATG-GTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * *
10911643 ACGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTAT-ATAGAATTAGTGGCG
* * * * * * *
10911707 TTTATAGGAAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTATGGAA
64 CTTAT-GGTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * * *
10911756 GCGCCGCAAACTATCTTAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * * **
10911821 CATATGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTAGCTA
64 CTTATGGT-AAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* ** * * *
10911871 GCGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGC
1 GCGCCGCAAAATATCTTAAC-AAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGC
* *
10911936 TTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAA
65 TTATGGTAAA-CGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTG-GAA
* * *
10911985 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAA-CAAAACGCATAGTTTTGGTCTTGATGTATA-TAGAATTAGTGGCG
* * * * **
10912050 CTTA--GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTA
64 CTTATGGT-AAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* * *
10912098 GCGCCGCAAAATATCTTAACAAAAACGCAGT-GTTTTGATCTTAATGTATATAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAAC-AAAACGCA-TAGTTTTGGTCTTGATGTATATAGAATTAGTGGCG
* *
10912162 CTTACGGTAAACCGCCGCTAAAGAATATTAATAGC
64 CTTATGGTAAA-CGCCGCTAAAGAATAGTAATAGC
10912197 AGCAAAATAT
Statistics
Matches: 453, Mismatches: 82, Indels: 37
0.79 0.14 0.06
Matches are distributed among these distances:
112 51 0.11
113 167 0.37
114 175 0.39
115 60 0.13
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (111 bp):
GCGCCGCAAAATATCTTAACAAAACGCATAGTTTTGGTCTTGATGTATATAGAATTAGTGGCGCT
TATGGTAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
Found at i:10912098 original size:227 final size:226
Alignment explanation
Indices: 10911644--10912427 Score: 827
Period size: 208 Copynumber: 3.5 Consensus size: 226
10911634 TTTCTGGAAA
* * * * * * * * * *
10911644 CGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCGT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTAT-ATAAAATTAGTGGCGC
* * * * * * *
10911708 TTATAGG-AAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTATGGAAGCGCCGCAAACTATCT
65 TTA-CGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCT
* * * ** * * * * * * *
10911772 TAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCGCATATGGTCAAACGCC
129 TAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGC-T-TAGTGAAACGCC
* *
10911837 GCTAAAGAATAGTATTAGCGGCGATTTGTAGCTAG
192 GTTAAAGCATAGTATTAGCGGCGATTTGTAGCTAG
10911872 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
* *
10911937 TACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAAGCGCCGCAAAATATCTT
66 TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTG-GAAGCGCCGCAAAATATCTT
10912002 AACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTT
130 AACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTT
10912067 AAAGCATAGTATTAGCGGCGATTTGTAGCTAG
195 AAAGCATAGTATTAGCGGCGATTTGTAGCTAG
* *
10912099 CGCCGCAAAATATCTTAACAAAAACGCAGTGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
* *
10912164 TACGGTAAACCGCCGCTAAAGAATATTAATA-----GC--------A-----GCAAAATATCTTA
66 TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTTA
10912211 ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
131 ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
* * ** *
10912276 AAGCATAGTATTAGCGGCGCTTGGATA-AAAT
196 AAGCATAGTATTAGCGGCGATTTG-TAGCTAG
* * * * * * * ** * *
10912307 CGCCACCAAGTATCTGAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGA
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGC
* * * * *
10912372 TTTCGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGATTTGTTGATAGCGCCGC
65 TTACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGA-AGCGCCGC
10912428 GACTTACCAT
Statistics
Matches: 473, Mismatches: 59, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
208 141 0.30
209 40 0.08
213 1 0.00
214 1 0.00
222 2 0.00
223 1 0.00
227 139 0.29
228 77 0.16
229 71 0.15
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (226 bp):
CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTTA
ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
AAGCATAGTATTAGCGGCGATTTGTAGCTAG
Found at i:10912715 original size:14 final size:14
Alignment explanation
Indices: 10912646--10912716 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
10912636 ACAGTGTAAA
*
10912646 GTTTAAAGTTTAGG
1 GTTTAAGGTTTAGG
* * *
10912660 GTTTACGATGTA-G
1 GTTTAAGGTTTAGG
10912673 GTTTAAGG-TTAGG
1 GTTTAAGGTTTAGG
*
10912686 GTATTAGGGTGTTTAGG
1 GT-TTA-AG-GTTTAGG
10912703 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
10912717 AGTCTGGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 2 0.05
13 10 0.23
14 18 0.42
15 2 0.05
16 4 0.09
17 7 0.16
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:10913899 original size:22 final size:22
Alignment explanation
Indices: 10913873--10913919 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
10913863 ACTATTCCGA
*
10913873 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
10913895 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
10913917 TTA
1 TTA
10913920 TTACAGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:10914301 original size:36 final size:36
Alignment explanation
Indices: 10914259--10914374 Score: 114
Period size: 36 Copynumber: 3.2 Consensus size: 36
10914249 GTTGTTATGT
10914259 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
1 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
* ** * * *
10914295 TCTGAAATA--ATTTGTTTTTG--ATTATGTTGTTATG
1 TCTGAAATATGCTTTGGATTTGAAATAAT-TTCTGA-G
*
10914329 TTCTGAAATATGCTTTGGATTTGAAATAATTTTTGAG
1 -TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
10914366 TCTGAAATA
1 TCTGAAATA
10914375 ATTTGTTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
32 4 0.07
33 4 0.07
34 9 0.15
35 9 0.15
36 18 0.30
37 9 0.15
38 4 0.07
39 4 0.07
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (36 bp):
TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
Found at i:10914325 original size:71 final size:71
Alignment explanation
Indices: 10914226--10914426 Score: 368
Period size: 71 Copynumber: 2.8 Consensus size: 71
10914216 TGAGTGGATT
10914226 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
10914291 TGAGTC
66 TGAGTC
*
10914297 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
10914362 TGAGTC
66 TGAGTC
*
10914368 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAATTATGCTTTGG-TTCTGAAAT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATT-TGAAAT
10914427 CTGGATCTGG
Statistics
Matches: 127, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
70 2 0.02
71 125 0.98
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (71 bp):
TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
TGAGTC
Found at i:10914581 original size:14 final size:14
Alignment explanation
Indices: 10914562--10914591 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10914552 ATAAAAGGTT
10914562 TTTAGTTAATCATC
1 TTTAGTTAATCATC
10914576 TTTAGTTAATCATC
1 TTTAGTTAATCATC
10914590 TT
1 TT
10914592 GCTGTTCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TTTAGTTAATCATC
Done.