Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64368997
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1610000 characters in sequence are not A, C, G, or T
File 28 of 208
Found at i:10915324 original size:29 final size:31
Alignment explanation
Indices: 10915269--10915346 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
10915259 ATATTTAAAT
*
10915269 TTTAAATTTAATAAATTATTTATAACAATTA
1 TTTAAATTTAATAAATTAATTATAACAATTA
10915300 TTTAAATTTAATAAA-TAATT-TAACAATTA
1 TTTAAATTTAATAAATTAATTATAACAATTA
*
10915329 TTTAAATTTTATTAAATT
1 TTTAAA-TTTAATAAATT
10915347 TTATTAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
29 15 0.35
30 12 0.28
31 16 0.37
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (31 bp):
TTTAAATTTAATAAATTAATTATAACAATTA
Found at i:10915720 original size:25 final size:25
Alignment explanation
Indices: 10915679--10915750 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
10915669 ATATATTCAT
10915679 TTACATAACACATAACTTACATAAC
1 TTACATAACACATAACTTACATAAC
* * * ** *
10915704 TTTCATAATACACAACTTACGCATC
1 TTACATAACACATAACTTACATAAC
*
10915729 TTACATAAGACATAACTTACAT
1 TTACATAACACATAACTTACAT
10915751 GTGTAAATTA
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.31
Consensus pattern (25 bp):
TTACATAACACATAACTTACATAAC
Found at i:10917472 original size:21 final size:21
Alignment explanation
Indices: 10917446--10917516 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
10917436 CTACAACTTA
* *
10917446 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
10917467 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
10917488 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
10917509 AAGCAGAG
1 AAGCAGAG
10917517 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:10917892 original size:41 final size:42
Alignment explanation
Indices: 10917839--10918002 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
10917829 GTTTTTGTAT
* * *
10917839 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTG-TA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
* *
10917880 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAAA
* * ****
10917923 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCC
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
** * *
10917965 TTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTT
10918003 TTTCCTAAGC
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
41 32 0.31
42 39 0.38
43 33 0.32
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (42 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAAA
Found at i:10918130 original size:42 final size:42
Alignment explanation
Indices: 10917928--10918130 Score: 293
Period size: 42 Copynumber: 4.8 Consensus size: 42
10917918 AGAAAAAAAA
*
10917928 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC-TAAG
*
10917970 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAG
* * * *
10918012 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTCCTAAG
*
10918054 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAG
* *
10918096 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
10918131 GTTTGTAAAC
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
41 7 0.05
42 126 0.86
43 13 0.09
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAG
Found at i:10920251 original size:18 final size:19
Alignment explanation
Indices: 10920223--10920271 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
10920213 TCTTCTGACC
10920223 AAAATAGAAAA-TAT-ATAAA
1 AAAATA-AAAAGTATAAT-AA
10920242 AAAACTAAAAAGTATAATAA
1 AAAA-TAAAAAGTATAATAA
10920262 AAAATAAAAA
1 AAAATAAAAA
10920272 ATTTACATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 14 0.52
20 11 0.41
21 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATAAAAAGTATAATAA
Found at i:10920272 original size:20 final size:18
Alignment explanation
Indices: 10920223--10920273 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
10920213 TCTTCTGACC
*
10920223 AAAATAGAAAATATATAAA
1 AAAATAAAAAATATAT-AA
*
10920242 AAAACTAAAAAGTATAATAA
1 AAAA-TAAAAAATAT-ATAA
10920262 AAAATAAAAAAT
1 AAAATAAAAAAT
10920274 TTACATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 11 0.41
20 14 0.52
21 2 0.07
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
AAAATAAAAAATATATAA
Found at i:10920534 original size:32 final size:32
Alignment explanation
Indices: 10920496--10920559 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
10920486 AATTAATCAA
10920496 CATGAGTTG-TCAAATTAAATTAATT-AATTTAT
1 CATGAGTTGCT-AAATTAAATT-ATTCAATTTAT
*
10920528 CATGAGTTGCTAAATTCAATTATTCAATTTAT
1 CATGAGTTGCTAAATTAAATTATTCAATTTAT
10920560 AAGTTTATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 3 0.10
32 25 0.86
33 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (32 bp):
CATGAGTTGCTAAATTAAATTATTCAATTTAT
Found at i:10921647 original size:21 final size:21
Alignment explanation
Indices: 10921619--10921682 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
10921609 AATCTTACTA
* *
10921619 CTACAGTATCCAATCTCATTG
1 CTACAGTAACCAATCTCATCG
* *
10921640 CTATAGTAACTAATCTCATCG
1 CTACAGTAACCAATCTCATCG
* *
10921661 CTACAGTAACTAATCTTATCG
1 CTACAGTAACCAATCTCATCG
10921682 C
1 C
10921683 CACCACTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (21 bp):
CTACAGTAACCAATCTCATCG
Found at i:10922040 original size:20 final size:20
Alignment explanation
Indices: 10921997--10922041 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10921987 CCTTAAATTG
** * *
10921997 TTTTATTTATAAGGTTGTTG
1 TTTTATTTATAAAATTATTA
10922017 TTTTATTTATAAAATTATTA
1 TTTTATTTATAAAATTATTA
10922037 TTTTA
1 TTTTA
10922042 ATAAATAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTTATTTATAAAATTATTA
Found at i:10925288 original size:18 final size:18
Alignment explanation
Indices: 10925245--10925279 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10925235 AATCCTTATG
*
10925245 ATTGAA-TTTGTTAATTA
1 ATTGAAGTTAGTTAATTA
10925262 ATTGAAGTTAGTTAATTA
1 ATTGAAGTTAGTTAATTA
10925280 GTTTGAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (18 bp):
ATTGAAGTTAGTTAATTA
Found at i:10927395 original size:21 final size:22
Alignment explanation
Indices: 10927361--10927408 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
10927351 TAGTTTTTTT
10927361 TAAAAGTTACAAA-TATTGA-AA
1 TAAAAGTTACAAATTATT-ACAA
10927382 TAAAA-TTACTAAATTATTACAA
1 TAAAAGTTAC-AAATTATTACAA
10927404 TAAAA
1 TAAAA
10927409 AAAGTTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.17
21 9 0.38
22 11 0.46
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (22 bp):
TAAAAGTTACAAATTATTACAA
Found at i:10934410 original size:3 final size:3
Alignment explanation
Indices: 10934404--10934440 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
10934394 TCATTATCAC
10934404 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10934441 ATGAATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:10934434 original size:23 final size:27
Alignment explanation
Indices: 10934407--10934458 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 27
10934397 TTATCACAAT
10934407 AATAATAAT-AAT-AAT-AAT-AATAA
1 AATAATAATAAATGAATAAATAAATAA
10934430 AATAATAATAAATGAATAAATAAATAA
1 AATAATAATAAATGAATAAATAAATAA
10934457 AA
1 AA
10934459 ACAAGTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 9 0.36
24 3 0.12
25 3 0.12
26 3 0.12
27 7 0.28
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (27 bp):
AATAATAATAAATGAATAAATAAATAA
Found at i:10942639 original size:19 final size:19
Alignment explanation
Indices: 10942598--10942640 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
10942588 AAAAATAAAC
* *
10942598 TTTTAAATATTTTTTTTAT
1 TTTTAAATATTTTTTTGAA
10942617 TTTTAAA-ATTTCTTTTGAA
1 TTTTAAATATTT-TTTTGAA
10942636 TTTTA
1 TTTTA
10942641 TTTTTAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTAAATATTTTTTTGAA
Found at i:10945011 original size:20 final size:20
Alignment explanation
Indices: 10944986--10945027 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10944976 AGTATCTTTC
*
10944986 TTTT-AAAATCAAAATATTAT
1 TTTTAAAAAT-AAAATATAAT
10945006 TTTTAAAAATAAAATATAAT
1 TTTTAAAAATAAAATATAAT
10945026 TT
1 TT
10945028 CATAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTAAAAATAAAATATAAT
Found at i:10949634 original size:20 final size:21
Alignment explanation
Indices: 10949596--10949635 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
10949586 TCTTCAGTAT
* *
10949596 CCATGATGGTAAAGCATAGGC
1 CCATGAAGGTAAAGAATAGGC
10949617 CCATGAAGG-AAAGAATAGG
1 CCATGAAGGTAAAGAATAGG
10949636 AGGTCTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.40, C:0.15, G:0.30, T:0.15
Consensus pattern (21 bp):
CCATGAAGGTAAAGAATAGGC
Found at i:10952615 original size:15 final size:15
Alignment explanation
Indices: 10952591--10952625 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
10952581 TATCGAAGAG
*
10952591 CTTCCGGCTCTTAAA
1 CTTCCGGCTCGTAAA
*
10952606 CTTCCTGCTCGTAAA
1 CTTCCGGCTCGTAAA
10952621 CTTCC
1 CTTCC
10952626 CCGTAAACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.11, T:0.34
Consensus pattern (15 bp):
CTTCCGGCTCGTAAA
Found at i:10954382 original size:22 final size:22
Alignment explanation
Indices: 10954356--10954400 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
10954346 GAATATCTCA
*
10954356 TTTTTTTAAAGATATTTTAATTC
1 TTTTTATAAAGA-ATTTTAATTC
*
10954379 TTTTTACTAAATAATTTTAATT
1 TTTTTA-TAAAGAATTTTAATT
10954401 TAAAGTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTTATAAAGAATTTTAATTC
Found at i:10957476 original size:50 final size:51
Alignment explanation
Indices: 10957401--10957514 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 51
10957391 CTTACGTATG
* * *
10957401 ATCACTTATCACTTGTCCCTGATCAGATAAGTGCAG-TTAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTT
* * *
10957451 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTT
10957502 ATCACTTGTCACT
1 ATCACTTGTCACT
10957515 GATCAGAAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
50 32 0.57
51 24 0.43
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTT
Found at i:10968796 original size:30 final size:31
Alignment explanation
Indices: 10968757--10968822 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
10968747 ATATGTTTTT
* * *
10968757 AATTTTTTAATAATTTTAATTTTTTAAAAAT-
1 AATTTTTAAAT-ATTTTAAATTTTAAAAAATC
*
10968788 AATTTTTAAATTTTTTAAATTTTAAAAAATC
1 AATTTTTAAATATTTTAAATTTTAAAAAATC
10968819 AATT
1 AATT
10968823 AAATTATGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (31 bp):
AATTTTTAAATATTTTAAATTTTAAAAAATC
Found at i:10974360 original size:85 final size:85
Alignment explanation
Indices: 10974257--10974487 Score: 408
Period size: 85 Copynumber: 2.7 Consensus size: 85
10974247 ATCAAGAACT
* *
10974257 AACATGCACTTGGCACAAATACTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATTTGTT
1 AACATGCACTTGGTACAAATCCTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATTTGTT
10974322 GTGAAATTTTAACAAGTCGA
66 GTGAAATTTTAACAAGTCGA
10974342 AACATGCACTTGGTACAAATCCTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATTTGTT
1 AACATGCACTTGGTACAAATCCTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATTTGTT
10974407 GTGAAATTTTAACAAGTCGA
66 GTGAAATTTTAACAAGTCGA
* * **
10974427 AACATGCACTTGGTACAAATCCTATTGTACACCTTGATGTTTGTTTGTATGTGCATGCATT
1 AACATGCACTTGGTACAAATCCTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATT
10974488 CGGTGCCTAT
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 140 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (85 bp):
AACATGCACTTGGTACAAATCCTATTGTACGCCTTGATGTGTGTTTGTATGCACATGCATTTGTT
GTGAAATTTTAACAAGTCGA
Found at i:10979193 original size:19 final size:22
Alignment explanation
Indices: 10979164--10979203 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
10979154 ATATTGCATC
10979164 AAAAATAAATA-TTT-ATATTA
1 AAAAATAAATACTTTAATATTA
10979184 AAAAAT-AATACTTTAATATT
1 AAAAATAAATACTTTAATATT
10979204 TGTTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 9 0.50
21 5 0.28
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAATAAATACTTTAATATTA
Found at i:10981636 original size:16 final size:16
Alignment explanation
Indices: 10981615--10981684 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
10981605 TTTGGTTCGC
* * *
10981615 TGTATTGGATTAGAGA
1 TGTAATGGAATAGAGG
* *
10981631 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
10981647 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
10981663 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
10981679 TGTAAT
1 TGTAAT
10981685 AGCAAATCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.34, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:10981768 original size:39 final size:43
Alignment explanation
Indices: 10981662--10981772 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 43
10981652 TGGAATAGAG
10981662 GTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 GTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
* * ***
10981705 GAGTGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T
1 --GTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
10981748 -TG-AATGGAATAGAGGTGTAATAGCA
1 GTGTAATGGAATAGAGGTGTAATAGCA
10981773 TAATGGAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
39 20 0.34
40 2 0.03
43 1 0.02
44 11 0.19
45 24 0.41
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (43 bp):
GTGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
Found at i:10981940 original size:18 final size:17
Alignment explanation
Indices: 10981918--10981952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10981908 TTATTATTAA
*
10981918 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10981936 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10981953 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10981998 original size:61 final size:61
Alignment explanation
Indices: 10981933--10982240 Score: 237
Period size: 61 Copynumber: 5.1 Consensus size: 61
10981923 TTTTAATTAA
*
10981933 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTGATATAAATTTACTCAAATAAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATAAT
* * * * * * * * *
10981994 AATATATGATACT-ATAAAA-TATAAATTAACATAATTATTATTAAATATA-TTA-T-AATTAA-
1 AATATATAAT-TTAATAAAATTCTTAA-TAA-TTAA-TATTCTTATATAAATTTACTCAAATAAT
* *
10982053 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATAAT
* * * ** * * * *
10982114 TATATATGATACT-ATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATCTTAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATT-A-AT-ATTCTTATATAAATTTA-CTCAAATAA
10982173 -
61 T
* *
10982173 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATAAT
10982234 AATATAT
1 AATATAT
10982241 TATACTATAA
Statistics
Matches: 182, Mismatches: 43, Indels: 44
0.68 0.16 0.16
Matches are distributed among these distances:
57 12 0.07
58 9 0.05
59 45 0.25
60 43 0.24
61 52 0.29
62 9 0.05
63 12 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATAAATTTACTCAAATAAT
Found at i:10982057 original size:59 final size:58
Alignment explanation
Indices: 10981904--10982302 Score: 165
Period size: 61 Copynumber: 6.7 Consensus size: 58
10981894 ATATTTAAAT
* * * * *
10981904 ATAATTATTATTAAATATATTTTAATTAAAATATATAAT-TTAATAAAATTCTTAA-TAA
1 ATAATTATTATTAAATATATTATAATTAAAATATATGATACT-ATAAAA-TATAAATTAA
* * * * * *
10981962 TTAA-TATTCTGATATAAATTTACTCAAATAATAATATATGATACTATAAAATATAAATTAA
1 ATAATTATTATTAAATATA-TTA-T-AATTAA-AATATATGATACTATAAAATATAAATTAA
* * * *
10982023 CATAATTATTATTAAATATATTATAATTAAAATATATAAT-TTAATAAAATTCTTAA-TAA
1 -ATAATTATTATTAAATATATTATAATTAAAATATATGATACT-ATAAAA-TATAAATTAA
* * * * ** * *
10982082 TTAA-TATTCTTATATGA-ATTTACTCAAATCATTATATATGATACTATAAAAGATAATTTAA
1 ATAATTATTATTAAAT-ATA-TTA-T--AATTAAAATATATGATACTATAAAATATAAATTAA
* * * *
10982143 CATAATTATTATTAAATATATCT-TAATTAAAATATATAAT-TTAATAAAATTCTTAA-TAA
1 -ATAATTATTATTAAATATAT-TATAATTAAAATATATGATACT-ATAAAA-TATAAATTAA
* * * * * * * *
10982202 TTAA-TATTCTTATATGA-ATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA
1 ATAATTATTATTAAAT-ATA-TTA-T--AATTAAAATATATGATACTATAAAATATAAATT-AA
* *
10982264 ATAATTAATATTAAATATATTTTAATTAAAATATATGAT
1 ATAATTATTATTAAATATATTATAATTAAAATATATGAT
10982303 TTAATAAAAT
Statistics
Matches: 243, Mismatches: 64, Indels: 67
0.65 0.17 0.18
Matches are distributed among these distances:
57 31 0.13
58 19 0.08
59 55 0.23
60 24 0.10
61 62 0.26
62 22 0.09
63 30 0.12
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (58 bp):
ATAATTATTATTAAATATATTATAATTAAAATATATGATACTATAAAATATAAATTAA
Found at i:10982066 original size:14 final size:15
Alignment explanation
Indices: 10982017--10982068 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
10982007 ATAAAATATA
10982017 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
10982032 TATTAAATATATTAT
1 AATTAAATATATTAT
10982047 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
10982060 AATTTAATA
1 AATTAAATA
10982069 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:10982310 original size:59 final size:57
Alignment explanation
Indices: 10982127--10982311 Score: 155
Period size: 59 Copynumber: 3.1 Consensus size: 57
10982117 ATATGATACT
* *
10982127 ATAAAAGATAATTTAACATAATTATTATTAAATATATCTTAATTAAAATATATAATTTA
1 ATAAAAGATAATTTAA-ATAATTAATATTAAATATATTTTAATTAAAATATAT-ATTTA
** * * *
10982186 AT-AAA-AT--TCTT-AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATTATA
1 ATAAAAGATAAT-TTAAATAATTAATATT-AAATAT-ATTTTAATTAAA--AT-ATATATT-TA
10982245 CTATAAAAGATAATTTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTA
1 --ATAAAAGATAATTT-AAATAATTAATATTAAATATATTTTAATTAAAATATAT-ATTTA
10982306 ATAAAA
1 ATAAAA
10982312 TTTAAAATAA
Statistics
Matches: 98, Mismatches: 12, Indels: 32
0.69 0.08 0.23
Matches are distributed among these distances:
54 11 0.11
55 6 0.06
56 10 0.10
57 2 0.02
58 8 0.08
59 14 0.14
61 8 0.08
62 8 0.08
63 2 0.02
64 11 0.11
65 5 0.05
66 13 0.13
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (57 bp):
ATAAAAGATAATTTAAATAATTAATATTAAATATATTTTAATTAAAATATATATTTA
Found at i:10982324 original size:120 final size:120
Alignment explanation
Indices: 10981904--10982313 Score: 705
Period size: 120 Copynumber: 3.4 Consensus size: 120
10981894 ATATTTAAAT
10981904 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
* * * * *
10981969 TCTGATATAAATTTACTCAAATAATAATATATGATACTATAAAATATAAATTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
10982024 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
*
10982089 TCTTATATGAATTTACTCAAATCATTATATATGATACTATAAAAGATAATTTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
10982144 ATAATTATTATTAAATATATCTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
*
10982209 TCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA-
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT-AAC
* *
10982264 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
10982314 TAAAATAATT
Statistics
Matches: 275, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
120 273 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
Found at i:10982391 original size:35 final size:37
Alignment explanation
Indices: 10982352--10982431 Score: 119
Period size: 39 Copynumber: 2.2 Consensus size: 37
10982342 TAAGTGAGTA
10982352 AGAATTGAACTCT-AA-AAAAAAAAACATAACCATAT
1 AGAATTGAACTCTAAATAAAAAAAAACATAACCATAT
10982387 AGAATTGAACTCTAAAAATAAAAAAAAACATAACCATAT
1 AGAATTGAACTCT--AAATAAAAAAAAACATAACCATAT
*
10982426 TGAATT
1 AGAATT
10982432 ATCATCAACA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
35 13 0.32
38 2 0.05
39 25 0.62
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.23
Consensus pattern (37 bp):
AGAATTGAACTCTAAATAAAAAAAAACATAACCATAT
Found at i:10994542 original size:20 final size:21
Alignment explanation
Indices: 10994513--10994552 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
10994503 TTTGTTTTCT
*
10994513 AAAATTTTAAATAT-ATTAAA
1 AAAATGTTAAATATAATTAAA
*
10994533 AAAATGTTAAGTATAATTAA
1 AAAATGTTAAATATAATTAA
10994553 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATGTTAAATATAATTAAA
Found at i:10994739 original size:24 final size:23
Alignment explanation
Indices: 10994695--10994741 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
10994685 TTAAAATTTT
* *
10994695 AATATATTCAATATATTTTTTAA
1 AATATATTCAATACATCTTTTAA
*
10994718 AATATATTTTAATACATCTTTTAA
1 AATATA-TTCAATACATCTTTTAA
10994742 TACGTAAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (23 bp):
AATATATTCAATACATCTTTTAA
Found at i:10994821 original size:17 final size:18
Alignment explanation
Indices: 10994769--10994824 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
10994759 GATTTTTTAT
*
10994769 TATATTTAAAATTTTAAA
1 TATACTTAAAATTTTAAA
*
10994787 -AAACTTCAAAGA-TTTAAA
1 TATACTT-AAA-ATTTTAAA
10994805 TATA-TTAAAATTTTAAA
1 TATACTTAAAATTTTAAA
10994822 TAT
1 TAT
10994825 TTTAAAGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
16 1 0.03
17 16 0.52
18 11 0.35
19 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
TATACTTAAAATTTTAAA
Found at i:10994875 original size:16 final size:17
Alignment explanation
Indices: 10994854--10994892 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
10994844 ATAACCAATT
10994854 TTAAAATTTT-AA-TATA
1 TTAAAATTTTGAACT-TA
10994870 TTAAAATTTTGAACTTA
1 TTAAAATTTTGAACTTA
10994887 TTAAAA
1 TTAAAA
10994893 AAATTTAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.48
17 10 0.48
18 1 0.05
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAAAATTTTGAACTTA
Found at i:10994920 original size:59 final size:61
Alignment explanation
Indices: 10994798--10994924 Score: 188
Period size: 59 Copynumber: 2.1 Consensus size: 61
10994788 AACTTCAAAG
* * *
10994798 ATTTAAATATATTAAAATTTTAAATATTTTAAAGAAAATGTTGAGTATAACCAATTTTAAA
1 ATTTTAATATATTAAAATTTTAAATATATTAAAGAAAATGTTAAGTATAACCAATTTTAAA
*
10994859 ATTTTAATATATTAAAATTTTGAACT-TATTAAA-AAAAT-TTAAGTATAACCAATTTTAAA
1 ATTTTAATATATTAAAATTTT-AAATATATTAAAGAAAATGTTAAGTATAACCAATTTTAAA
10994918 ATTTTAA
1 ATTTTAA
10994925 AATTTCAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
59 27 0.44
60 5 0.08
61 26 0.43
62 3 0.05
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.43
Consensus pattern (61 bp):
ATTTTAATATATTAAAATTTTAAATATATTAAAGAAAATGTTAAGTATAACCAATTTTAAA
Found at i:10998834 original size:29 final size:30
Alignment explanation
Indices: 10998778--10998849 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
10998768 TTTTTATATG
*
10998778 AATAATATAAAATAAATCAATATATACGAA
1 AATAAGATAAAATAAATCAATATATACGAA
* * * *
10998808 AATAAGATAACATGAAT-AATATTTACGAG
1 AATAAGATAAAATAAATCAATATATACGAA
10998837 AAT-AGATAAAATA
1 AATAAGATAAAATA
10998850 CACAGTAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
28 8 0.23
29 13 0.37
30 14 0.40
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.26
Consensus pattern (30 bp):
AATAAGATAAAATAAATCAATATATACGAA
Found at i:11010080 original size:20 final size:23
Alignment explanation
Indices: 11010034--11010080 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 23
11010024 ACCAAAAAAA
11010034 ATTTAGAAAATTAAAAAAAGTAT
1 ATTTAGAAAATTAAAAAAAGTAT
*
11010057 -TTTA-AAAA-TAAAAATA-TAT
1 ATTTAGAAAATTAAAAAAAGTAT
11010076 ATTTA
1 ATTTA
11010081 TTATATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 3 0.14
20 11 0.50
21 4 0.18
22 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (23 bp):
ATTTAGAAAATTAAAAAAAGTAT
Found at i:11012465 original size:15 final size:15
Alignment explanation
Indices: 11012445--11012474 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
11012435 CTTTCAAAAT
11012445 ATTATATTTTCATTA
1 ATTATATTTTCATTA
11012460 ATTATATTTTCATTA
1 ATTATATTTTCATTA
11012475 TTTCTAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTATATTTTCATTA
Found at i:11030627 original size:2 final size:2
Alignment explanation
Indices: 11030615--11030648 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
11030605 AATAGTGTAT
*
11030615 GA GA GA TGA GA GA GA GA GA GA GA GA GC GA GA GA G
1 GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA G
11030649 GTCTTTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.44, C:0.03, G:0.50, T:0.03
Consensus pattern (2 bp):
GA
Found at i:11037379 original size:3 final size:3
Alignment explanation
Indices: 11037371--11037399 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
11037361 AGGTTATTAA
11037371 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
11037400 AAAGATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:11056589 original size:19 final size:19
Alignment explanation
Indices: 11056567--11056627 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
11056557 TAAAAAATAC
11056567 AAAAACCGAAAAAATTATA
1 AAAAACCGAAAAAATTATA
** * *
11056586 AAAAAGTG-TAAAATTTTA
1 AAAAACCGAAAAAATTATA
*
11056604 TAAAAACCATAAAAAATTATA
1 -AAAAACC-GAAAAAATTATA
11056625 AAA
1 AAA
11056628 TATATAGTAA
Statistics
Matches: 30, Mismatches: 9, Indels: 5
0.68 0.20 0.11
Matches are distributed among these distances:
18 8 0.27
19 11 0.37
20 3 0.10
21 8 0.27
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAAACCGAAAAAATTATA
Found at i:11056912 original size:17 final size:17
Alignment explanation
Indices: 11056863--11056913 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
11056853 TTTTTATTAA
* *
11056863 AATTTAATAATTTTTAT
1 AATTTTATAATTTTTTT
11056880 AATTTT-T-ATTGATTTTT
1 AATTTTATAATT--TTTTT
11056897 AATTTTATAATTTTTTT
1 AATTTTATAATTTTTTT
11056914 GCTACATATC
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.11
16 1 0.04
17 20 0.71
18 1 0.04
19 3 0.11
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
AATTTTATAATTTTTTT
Found at i:11061117 original size:10 final size:9
Alignment explanation
Indices: 11061101--11061125 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
11061091 GAGGTAAGGC
11061101 TAAAAAAAA
1 TAAAAAAAA
11061110 TAAAAAAAA
1 TAAAAAAAA
11061119 TAAAAAA
1 TAAAAAA
11061126 TTATCACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:11061630 original size:33 final size:33
Alignment explanation
Indices: 11061588--11061653 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
11061578 GAAATCCACC
11061588 CACCTCGATATATTTACAAAAAAAAAAAACTAT
1 CACCTCGATATATTTACAAAAAAAAAAAACTAT
11061621 CACCTCGATATATTTACAAAAAAAAAAAACTAT
1 CACCTCGATATATTTACAAAAAAAAAAAACTAT
11061654 TGTAAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (33 bp):
CACCTCGATATATTTACAAAAAAAAAAAACTAT
Found at i:11061813 original size:46 final size:45
Alignment explanation
Indices: 11061735--11061849 Score: 185
Period size: 46 Copynumber: 2.5 Consensus size: 45
11061725 AATTTTTTTA
*
11061735 CTTCAAAATAAAAAATAAAACAATTAAAAAATATAATCTTAATTG
1 CTTCAAAATAAAAAATAAAACAATCAAAAAATATAATCTTAATTG
* * *
11061780 CTTCAAAATAAAATAATAAAACAATCAACAAATATACTCTTATTTG
1 CTTCAAAATAAAA-AATAAAACAATCAAAAAATATAATCTTAATTG
11061826 CTTCAAAATAAAAAATAAAACAAT
1 CTTCAAAATAAAAAATAAAACAAT
11061850 TAAACTAAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
45 24 0.37
46 41 0.63
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (45 bp):
CTTCAAAATAAAAAATAAAACAATCAAAAAATATAATCTTAATTG
Found at i:11070038 original size:19 final size:18
Alignment explanation
Indices: 11070006--11070044 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
11069996 GTAGATATAC
*
11070006 TTGTATCAAAATCTTGAT
1 TTGTATCAAAATCTAGAT
*
11070024 TTGTGATCAATATCTAGAT
1 TTGT-ATCAAAATCTAGAT
11070043 TT
1 TT
11070045 CAAGTTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (18 bp):
TTGTATCAAAATCTAGAT
Found at i:11070118 original size:18 final size:16
Alignment explanation
Indices: 11070095--11070140 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
11070085 CAATACGAGT
11070095 TAAAAGAAAGAAAAAGTA
1 TAAAAGAAAGAAAAA--A
*
11070113 TAAAAGAAA-ATAAAA
1 TAAAAGAAAGAAAAAA
11070128 TAAAA-AAAGAAAA
1 TAAAAGAAAGAAAA
11070141 GAAAAGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 3 0.12
15 9 0.36
17 4 0.16
18 9 0.36
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
TAAAAGAAAGAAAAAA
Found at i:11079699 original size:23 final size:22
Alignment explanation
Indices: 11079672--11079721 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
11079662 GCTAACTACA
11079672 AAATCAAATC-TCTAAGATTTAT
1 AAATCAAATCTTCTAAGA-TTAT
11079694 AGAATCAAATCTTCTAAGATTAT
1 A-AATCAAATCTTCTAAGATTAT
11079717 AAATC
1 AAATC
11079722 CTCTACGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 14 0.54
24 7 0.27
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (22 bp):
AAATCAAATCTTCTAAGATTAT
Found at i:11085885 original size:6 final size:6
Alignment explanation
Indices: 11085876--11085901 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11085866 TTTTGGTTTA
11085876 TTTTGT TTTTGT TTTTGT TTTTGT TT
1 TTTTGT TTTTGT TTTTGT TTTTGT TT
11085902 AATTAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:11102621 original size:6 final size:6
Alignment explanation
Indices: 11102610--11102643 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
11102600 AGATGTCAAA
*
11102610 TGATGG TGATGG TGATGG TAATGG TGATGG TGAT
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGAT
11102644 TGGTAATGCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (6 bp):
TGATGG
Found at i:11102635 original size:18 final size:19
Alignment explanation
Indices: 11102612--11102651 Score: 73
Period size: 18 Copynumber: 2.2 Consensus size: 19
11102602 ATGTCAAATG
11102612 ATGGTGATGGTGA-TGGTA
1 ATGGTGATGGTGATTGGTA
11102630 ATGGTGATGGTGATTGGTA
1 ATGGTGATGGTGATTGGTA
11102649 ATG
1 ATG
11102652 CGCCGCCCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (19 bp):
ATGGTGATGGTGATTGGTA
Found at i:11109555 original size:13 final size:13
Alignment explanation
Indices: 11109518--11109555 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
11109508 TTAATTTATA
11109518 AAAAATTAAA-AT
1 AAAAATTAAATAT
11109530 AATTAAATTAAATAT
1 AA--AAATTAAATAT
11109545 AAAAATTAAAT
1 AAAAATTAAAT
11109556 CCACAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.09
13 9 0.39
14 8 0.35
15 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAAATTAAATAT
Found at i:11119715 original size:50 final size:51
Alignment explanation
Indices: 11119590--11119735 Score: 188
Period size: 50 Copynumber: 2.9 Consensus size: 51
11119580 TAAATGATAC
* * ** *
11119590 CCGGTTCACATAGTAGCCTGTACATAGTACTACACACGTGATCGAAGTTATT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCTAGTCATT
* * *
11119642 -CAGTACGCATAGTAGCCTGCACATAGTACTACACATGTGACCTA-TCATT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTAGTCATT
*
11119691 CCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCTA
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTA
11119736 CCAACTTCAC
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 4 0.05
50 42 0.52
51 35 0.43
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCTAGTCATT
Found at i:11119917 original size:15 final size:16
Alignment explanation
Indices: 11119888--11119919 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
11119878 AATCCAGTCC
11119888 AAAAATCACATTTTTG
1 AAAAATCACATTTTTG
*
11119904 AAAAATTACATTTTTG
1 AAAAATCACATTTTTG
11119920 CCCCTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATCACATTTTTG
Found at i:11120894 original size:28 final size:26
Alignment explanation
Indices: 11120850--11120901 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
11120840 TTAATTCCAA
*
11120850 CTTTTATAACATGTATATATATACATAT
1 CTTTTATAACA--TATATAAATACATAT
*
11120878 CTTTTATAATATATATAAATACAT
1 CTTTTATAACATATATAAATACAT
11120902 GCACATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
28 10 0.45
ACGTcount: A:0.42, C:0.10, G:0.02, T:0.46
Consensus pattern (26 bp):
CTTTTATAACATATATAAATACATAT
Found at i:11122645 original size:3 final size:3
Alignment explanation
Indices: 11122639--11122663 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11122629 CAACAACAAC
11122639 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
11122664 ATTTTGCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:11127664 original size:25 final size:24
Alignment explanation
Indices: 11127597--11127701 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 24
11127587 GCTTTTTAAT
* *
11127597 TAATGGCTCTTCGAAGCTTCCCAA
1 TAATGGCTATTCGAAGCTTCCCGA
11127621 T-ATGGCTTGATT-GAA-CTTCCCGA
1 TAATGGC-T-ATTCGAAGCTTCCCGA
*
11127644 TACATGGCTATTCGAAGCTTCCTGA
1 TA-ATGGCTATTCGAAGCTTCCCGA
* * * *
11127669 TTAATGGCTCTTCGGAGCTACCCGT
1 -TAATGGCTATTCGAAGCTTCCCGA
*
11127694 TATTGGCT
1 TAATGGCT
11127702 CACATGAGCT
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
23 16 0.25
24 16 0.25
25 31 0.48
26 2 0.03
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (24 bp):
TAATGGCTATTCGAAGCTTCCCGA
Found at i:11138168 original size:21 final size:21
Alignment explanation
Indices: 11138142--11138184 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
11138132 CCATCTGCTC
* *
11138142 ACACTCCACCTGTTTTGGAGT
1 ACACTCCACCTGCTGTGGAGT
11138163 ACACTCCACCTGCTGTGGAGT
1 ACACTCCACCTGCTGTGGAGT
11138184 A
1 A
11138185 TTGCTCGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (21 bp):
ACACTCCACCTGCTGTGGAGT
Found at i:11141142 original size:29 final size:29
Alignment explanation
Indices: 11141107--11141171 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
11141097 CTTAATATCC
11141107 AGCCCAATATTTTAAATCAATATACGAAT
1 AGCCCAATATTTTAAATCAATATACGAAT
* * *
11141136 AGTCCAATATTTTAAATTAATTTACGAAT
1 AGCCCAATATTTTAAATCAATATACGAAT
11141165 AGCCCAA
1 AGCCCAA
11141172 AACAGACCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (29 bp):
AGCCCAATATTTTAAATCAATATACGAAT
Found at i:11149969 original size:64 final size:64
Alignment explanation
Indices: 11149865--11149994 Score: 233
Period size: 64 Copynumber: 2.0 Consensus size: 64
11149855 AAGACAATAC
*
11149865 TGATAAATCATCTAAAACAGTACACATGATATTCCCGGTCCTAATTATAACACATCATGTGCTT
1 TGATAAATCATCTAAAACAGTACACATGATATTCCCGGTCCAAATTATAACACATCATGTGCTT
* *
11149929 TGATAAATCATCTAAAACAGTACACATGATATTCCTGGTCCAAATTATAACACATTATGTGCTT
1 TGATAAATCATCTAAAACAGTACACATGATATTCCCGGTCCAAATTATAACACATCATGTGCTT
11149993 TG
1 TG
11149995 TTATGCATGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (64 bp):
TGATAAATCATCTAAAACAGTACACATGATATTCCCGGTCCAAATTATAACACATCATGTGCTT
Found at i:11157423 original size:21 final size:21
Alignment explanation
Indices: 11157397--11157437 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11157387 ATCTGCTCAA
* *
11157397 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
11157418 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
11157438 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:11161093 original size:14 final size:13
Alignment explanation
Indices: 11161050--11161101 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
11161040 TAATAAATTT
*
11161050 AAAAAA-TAAAAA
1 AAAAAATTATAAA
* *
11161062 AAAAAACTATAAG
1 AAAAAATTATAAA
* *
11161075 CAAAATTTATAAA
1 AAAAAATTATAAA
11161088 AAAAAATTATAAA
1 AAAAAATTATAAA
11161101 A
1 A
11161102 TTTTTATTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
12 6 0.19
13 25 0.81
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (13 bp):
AAAAAATTATAAA
Found at i:11162658 original size:31 final size:29
Alignment explanation
Indices: 11162623--11162683 Score: 70
Period size: 31 Copynumber: 2.0 Consensus size: 29
11162613 TTCTCGAGGA
*
11162623 AATTTATTT-TATTTTTAATCTAGATTAAAAT
1 AATTTATTTGT-TTTTTAACCTA-A-TAAAAT
*
11162654 AATTTGTTTGTTTTTTAACCTAATAAAAT
1 AATTTATTTGTTTTTTAACCTAATAAAAT
11162683 A
1 A
11162684 TTATGTTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 7 0.26
30 1 0.04
31 18 0.67
32 1 0.04
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (29 bp):
AATTTATTTGTTTTTTAACCTAATAAAAT
Found at i:11175382 original size:15 final size:15
Alignment explanation
Indices: 11175349--11175381 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
11175339 TTTATAAATT
11175349 AAAA-AAATATATAA
1 AAAATAAATATATAA
11175363 AAAATAAATAATATAA
1 AAAATAAAT-ATATAA
11175379 AAA
1 AAA
11175382 TTCAAGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 4 0.24
16 9 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATAAATATATAA
Found at i:11192719 original size:2 final size:2
Alignment explanation
Indices: 11192712--11192740 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11192702 CTTCTAGAAT
11192712 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
11192741 ATTTGACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:11196652 original size:29 final size:29
Alignment explanation
Indices: 11196610--11196667 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
11196600 CTGGGTACCC
11196610 GTCCACCCGCAATCCTAATTGCAGATGGA
1 GTCCACCCGCAATCCTAATTGCAGATGGA
11196639 GTCCACCCGCAATCCTAATTGCAGATGGA
1 GTCCACCCGCAATCCTAATTGCAGATGGA
11196668 CATCTTCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (29 bp):
GTCCACCCGCAATCCTAATTGCAGATGGA
Found at i:11197163 original size:51 final size:51
Alignment explanation
Indices: 11197108--11197228 Score: 206
Period size: 51 Copynumber: 2.4 Consensus size: 51
11197098 TATTTTAAAA
*
11197108 AAGGAAATTGAGAGTAAATTGAAATTAAATATGGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGG
* * *
11197159 AAGGAATTTGAGAGGAATTTGAAATTAAATATGGATTTGAGTGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGG
11197210 AAGGAAATTGAGAGGAAAT
1 AAGGAAATTGAGAGGAAAT
11197229 ATGAGAGGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (51 bp):
AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGG
Found at i:11207737 original size:26 final size:25
Alignment explanation
Indices: 11207689--11207763 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 25
11207679 TGACTAATGG
*
11207689 AGGTGCCAACTTGAGAAAAAAAATAGTTT
1 AGGTACCAACTTGAG---AAAAA-AGTTT
11207718 AGGTACACAACTTGAGAAAAAAGTTT
1 AGGTAC-CAACTTGAGAAAAAAGTTT
* *
11207744 AGGTACCAATTTGGGAAAAA
1 AGGTACCAACTTGAGAAAAA
11207764 GAGTATAGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 12 0.29
26 11 0.26
27 5 0.12
29 5 0.12
30 9 0.21
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (25 bp):
AGGTACCAACTTGAGAAAAAAGTTT
Found at i:11211999 original size:236 final size:236
Alignment explanation
Indices: 11211586--11212060 Score: 869
Period size: 236 Copynumber: 2.0 Consensus size: 236
11211576 ACAAAAGCTC
* *
11211586 ATCTATGAGTATTAGCTAGAGTACAGTAACAGATAAAAACTAATTACATAAAAATCAGTCTAAAA
1 ATCTATGAGAATTAGCTAGAGTACAGCAACAGATAAAAACTAATTACATAAAAATCAGTCTAAAA
11211651 GAAGAGAGAAAAACAAAAAGGAGCAAAACACACCAGTCAAAATTCTACTTTTCACAAAATATTTT
66 GAAGAGAGAAAAACAAAAAGGAGCAAAACACACCAGTCAAAATTCTACTTTTCACAAAATATTTT
* *
11211716 TTTTTCTTAAAACTGGGGGAAGGGGAGGACTTCCAGCGATGTGCAGAAAATCTTCAGATGTTGCT
131 ATTTTCTTAAAAATGGGGGAAGGGGAGGACTTCCAGCGATGTGCAGAAAATCTTCAGATGTTGCT
*
11211781 ACTGCCAACAAGTTCTTACAATATGTAAATACTAAAATTTA
196 ACTGCCAAAAAGTTCTTACAATATGTAAATACTAAAATTTA
11211822 ATCTATGAGAATTAGCTAGAGTACAGCAACAGATAAAAACTAATTACATAAAAATCAGTCTAAAA
1 ATCTATGAGAATTAGCTAGAGTACAGCAACAGATAAAAACTAATTACATAAAAATCAGTCTAAAA
* * *
11211887 GAAGAGAGAAAAAGAAAAAGGAGTAAAACACACCAGTCAAAATTCTACTTTTCACTAAATATTTT
66 GAAGAGAGAAAAACAAAAAGGAGCAAAACACACCAGTCAAAATTCTACTTTTCACAAAATATTTT
11211952 ATTTTCTTAAAAATGGGGGAAGGGGAGGACTTCCAGCGATGTGCAGAAAATCTTCAGATGTTGCT
131 ATTTTCTTAAAAATGGGGGAAGGGGAGGACTTCCAGCGATGTGCAGAAAATCTTCAGATGTTGCT
*
11212017 ACTGCGAAAAAGTTCTTACAATATGTAAATACTAAAATTTA
196 ACTGCCAAAAAGTTCTTACAATATGTAAATACTAAAATTTA
11212058 ATC
1 ATC
11212061 GTGAAGTATA
Statistics
Matches: 230, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
236 230 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (236 bp):
ATCTATGAGAATTAGCTAGAGTACAGCAACAGATAAAAACTAATTACATAAAAATCAGTCTAAAA
GAAGAGAGAAAAACAAAAAGGAGCAAAACACACCAGTCAAAATTCTACTTTTCACAAAATATTTT
ATTTTCTTAAAAATGGGGGAAGGGGAGGACTTCCAGCGATGTGCAGAAAATCTTCAGATGTTGCT
ACTGCCAAAAAGTTCTTACAATATGTAAATACTAAAATTTA
Found at i:11215898 original size:19 final size:19
Alignment explanation
Indices: 11215853--11215900 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
11215843 ATAAAATTCT
11215853 AATAAATTATAAAAATAATA
1 AATAAA-TATAAAAATAATA
11215873 AGA-AAATATAAAACAT-ATA
1 A-ATAAATATAAAA-ATAATA
11215892 AATAAATAT
1 AATAAATAT
11215901 TTAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.04
19 17 0.68
20 6 0.24
21 1 0.04
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AATAAATATAAAAATAATA
Found at i:11215982 original size:10 final size:9
Alignment explanation
Indices: 11215845--11215985 Score: 59
Period size: 10 Copynumber: 14.4 Consensus size: 9
11215835 AAAACCCTAT
*
11215845 AAAATTCTA
1 AAAATTATA
11215854 ATAAATTATA
1 A-AAATTATA
*
11215864 AAAATAATA
1 AAAATTATA
*
11215873 AGAAAATATA
1 A-AAATTATA
11215883 AAACA-TATAA
1 AAA-ATTAT-A
*
11215893 ATAAATATTTA
1 A-AAAT-TATA
*
11215904 AAATTTTATA
1 AAA-ATTATA
* *
11215914 TAAACTTACA
1 -AAAATTATA
11215924 AAAATTATA
1 AAAATTATA
*
11215933 AAAATATAAAA
1 AAAAT-T-ATA
*
11215944 AAAATCATCA
1 AAAATTAT-A
**
11215954 AATTTTATA
1 AAAATTATA
*
11215963 AATATTATA
1 AAAATTATA
11215972 AAAACTTATA
1 AAAA-TTATA
11215982 AAAA
1 AAAA
11215986 ACCATACTTT
Statistics
Matches: 100, Mismatches: 19, Indels: 25
0.69 0.13 0.17
Matches are distributed among these distances:
9 39 0.39
10 44 0.44
11 15 0.15
12 2 0.02
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (9 bp):
AAAATTATA
Found at i:11215982 original size:19 final size:19
Alignment explanation
Indices: 11215805--11215983 Score: 53
Period size: 19 Copynumber: 9.3 Consensus size: 19
11215795 AAAAAATATG
* *
11215805 TATAAA-ATCATAACAACT
1 TATAAATATTATAAAAACT
* * *
11215823 TATAAGTATTATAAAACCC
1 TATAAATATTATAAAAACT
*
11215842 TATAAA-ATTCTAATAAA-T
1 TATAAATATTATAA-AAACT
* * *
11215860 TATAAAAATAATAAGAAAAT
1 TATAAATATTATAA-AAACT
* * * *
11215880 ATAAAACATATAAATAAATATT
1 -TATAA-ATAT-TATAAAAACT
* *
11215902 TA-AAATTTTATATAAACT
1 TATAAATATTATAAAAACT
* *
11215920 TACAAAAATTATAAAAA-T
1 TATAAATATTATAAAAACT
* * * * **
11215938 ATAAAAAAAATCATCAAATTT
1 -T-ATAAATATTATAAAAACT
11215959 TATAAATATTATAAAAACT
1 TATAAATATTATAAAAACT
11215978 TATAAA
1 TATAAA
11215984 AAACCATACT
Statistics
Matches: 116, Mismatches: 34, Indels: 21
0.68 0.20 0.12
Matches are distributed among these distances:
18 26 0.22
19 56 0.48
20 16 0.14
21 7 0.06
22 6 0.05
23 5 0.04
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.32
Consensus pattern (19 bp):
TATAAATATTATAAAAACT
Found at i:11217627 original size:27 final size:28
Alignment explanation
Indices: 11217561--11217627 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
11217551 TAAATCTCAA
* * *
11217561 AATTATATATGAATTTTAATTTAATGTGT
1 AATTATACATGAATTTTAATTT-AGGTGC
11217590 AATTGTATACATGAATTTTAATTT-GGTGC
1 AA-T-TATACATGAATTTTAATTTAGGTGC
11217619 AATTATACA
1 AATTATACA
11217628 CGTGAAACTC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 6 0.18
28 1 0.03
29 7 0.21
30 1 0.03
31 18 0.55
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.46
Consensus pattern (28 bp):
AATTATACATGAATTTTAATTTAGGTGC
Found at i:11222567 original size:13 final size:13
Alignment explanation
Indices: 11222549--11222575 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11222539 ACAAGCAATC
11222549 TGTAAGTAGAATT
1 TGTAAGTAGAATT
11222562 TGTAAGTAGAATT
1 TGTAAGTAGAATT
11222575 T
1 T
11222576 CCTGTTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TGTAAGTAGAATT
Found at i:11230592 original size:21 final size:21
Alignment explanation
Indices: 11230551--11230592 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
11230541 CTTCCTCCAT
*
11230551 CTCCTCTTCATCAATTTCTTC
1 CTCCTCTTCATCAATTACTTC
11230572 CTCCTCTTCATC-ATATACTTC
1 CTCCTCTTCATCAAT-TACTTC
11230593 TTCTTCTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCCTCTTCATCAATTACTTC
Found at i:11234175 original size:3 final size:3
Alignment explanation
Indices: 11234167--11234202 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
11234157 TGCATTTTCA
11234167 AGT AGT AGT AGT AGT AGT AGT AGT AGT A-T AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
11234203 AAGTTTCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (3 bp):
AGT
Found at i:11245286 original size:102 final size:107
Alignment explanation
Indices: 11245076--11245286 Score: 360
Period size: 105 Copynumber: 2.0 Consensus size: 107
11245066 CTAACCCTAT
* * *
11245076 TTATGTAATTTTAAAATTTTACTCGAGTTAATATTTTGTCTTCATAATAATATAATAAAAACTAA
1 TTATGTAATTTTAAAATTTTACTCCACTTAATATATTGTCTTCATAATAATATAATAAAAACTAA
11245141 CTTAACTAATAAGTTAACAAAATAAATTTGCCAATAAATCTA
66 CTTAACTAATAAGTTAACAAAATAAATTTGCCAATAAATCTA
11245183 TTATGTAATTTT-AAA-TTTACTCCACTTAATATATTGTCTTCATAATAATATAA-AAAAACTAA
1 TTATGTAATTTTAAAATTTTACTCCACTTAATATATTGTCTTCATAATAATATAATAAAAACTAA
11245245 CTTAACTAATAAGTTAAC-AAA-AAATTTGCCAATAAATCTA
66 CTTAACTAATAAGTTAACAAAATAAATTTGCCAATAAATCTA
11245285 TT
1 TT
11245287 TAAATTTATA
Statistics
Matches: 101, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
102 21 0.21
103 3 0.03
104 27 0.27
105 35 0.35
106 3 0.03
107 12 0.12
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (107 bp):
TTATGTAATTTTAAAATTTTACTCCACTTAATATATTGTCTTCATAATAATATAATAAAAACTAA
CTTAACTAATAAGTTAACAAAATAAATTTGCCAATAAATCTA
Found at i:11247386 original size:26 final size:25
Alignment explanation
Indices: 11247329--11247385 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
11247319 ATTAAGGATA
**
11247329 AAAAAAATTGAAAAAAAAAAGCTTC
1 AAAAAAATTGAAAAAAAAAAGCAAC
11247354 AAAAAAATTGAAAAAAAAAAG-AAC
1 AAAAAAATTGAAAAAAAAAAGCAAC
11247378 AATAAAAA
1 AA-AAAAA
11247386 AATGTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 26 0.90
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.12
Consensus pattern (25 bp):
AAAAAAATTGAAAAAAAAAAGCAAC
Found at i:11259424 original size:13 final size:13
Alignment explanation
Indices: 11259406--11259432 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11259396 GGAACCAAGA
11259406 AGATACATTTAAC
1 AGATACATTTAAC
11259419 AGATACATTTAAC
1 AGATACATTTAAC
11259432 A
1 A
11259433 TGTACTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
AGATACATTTAAC
Found at i:11264987 original size:5 final size:5
Alignment explanation
Indices: 11264977--11265002 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
11264967 TAGTCATGAC
11264977 TTTGT TTTGT TTTGT TTTGT TTTGT T
1 TTTGT TTTGT TTTGT TTTGT TTTGT T
11265003 CCCTTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:11265970 original size:27 final size:26
Alignment explanation
Indices: 11265925--11265975 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
11265915 AAAATTAAAT
*
11265925 ATAAAATATTTTAGTAATATGAAAAAA
1 ATAAAATATTTTAGAAATAT-AAAAAA
11265952 ATAAAATCATTTTA-AAATATAAAA
1 ATAAAAT-ATTTTAGAAATATAAAA
11265976 GTAACTTGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 12 0.55
28 6 0.27
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (26 bp):
ATAAAATATTTTAGAAATATAAAAAA
Found at i:11266693 original size:20 final size:20
Alignment explanation
Indices: 11266657--11266696 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
11266647 CTGGAATTTG
11266657 ATTAAAAATTAAGAAATAGA
1 ATTAAAAATTAAGAAATAGA
11266677 ATTAGAAAATTAA-AAATAGA
1 ATTA-AAAATTAAGAAATAGA
11266697 GAAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (20 bp):
ATTAAAAATTAAGAAATAGA
Found at i:11269687 original size:9 final size:9
Alignment explanation
Indices: 11269673--11269725 Score: 79
Period size: 9 Copynumber: 5.9 Consensus size: 9
11269663 TGGTTAAAAA
*
11269673 TTAACCAAC
1 TTAACCGAC
*
11269682 TTAACCGAT
1 TTAACCGAC
*
11269691 TTAACCGAT
1 TTAACCGAC
11269700 TTAACCGAC
1 TTAACCGAC
11269709 TTAACCGAC
1 TTAACCGAC
11269718 TTAACCGA
1 TTAACCGA
11269726 TTTAGTTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.26
Consensus pattern (9 bp):
TTAACCGAC
Found at i:11269696 original size:18 final size:18
Alignment explanation
Indices: 11269673--11269729 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
11269663 TGGTTAAAAA
*
11269673 TTAACCAACTTAACCGAT
1 TTAACCGACTTAACCGAT
* *
11269691 TTAACCGATTTAACCGAC
1 TTAACCGACTTAACCGAT
11269709 TTAACCGACTTAACCGAT
1 TTAACCGACTTAACCGAT
11269727 TTA
1 TTA
11269730 GTTCAACTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (18 bp):
TTAACCGACTTAACCGAT
Found at i:11269703 original size:27 final size:27
Alignment explanation
Indices: 11269673--11269729 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
11269663 TGGTTAAAAA
*
11269673 TTAACCAACTTAACCGATTTAACCGAT
1 TTAACCAACTTAACCGACTTAACCGAT
*
11269700 TTAACCGACTTAACCGACTTAACCGAT
1 TTAACCAACTTAACCGACTTAACCGAT
11269727 TTA
1 TTA
11269730 GTTCAACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (27 bp):
TTAACCAACTTAACCGACTTAACCGAT
Found at i:11271451 original size:18 final size:19
Alignment explanation
Indices: 11271418--11271453 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
11271408 ATTATCCTGC
11271418 AAAATTCGGTTAAACCGAA
1 AAAATTCGGTTAAACCGAA
11271437 AAAATTCGGTT-AACCGA
1 AAAATTCGGTTAAACCGA
11271454 CCGGTTTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (19 bp):
AAAATTCGGTTAAACCGAA
Found at i:11272466 original size:40 final size:39
Alignment explanation
Indices: 11272410--11272544 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 39
11272400 ACCAGTTTGG
11272410 CACCCAGTGCCTCATCGGATAATTTGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGGATAATTTGAAGT-ATAAATTGA
* * * * ** *
11272450 TACCCAATGTCTCATCGGCTAAACTGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGGATAATTTGAAGTATAAATTGA
* * *
11272487 CACCCAGTGCCTCATCGAATTAATTCGAAGTAGTAAATTAA
1 CACCCAGTGCCTCATCGGA-TAATTTGAAGTA-TAAATTGA
*
11272528 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
11272545 ACTCGAATTC
Statistics
Matches: 73, Mismatches: 18, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
37 21 0.29
38 7 0.10
40 23 0.32
41 22 0.30
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATTTGAAGTATAAATTGA
Found at i:11272532 original size:41 final size:40
Alignment explanation
Indices: 11272410--11272545 Score: 118
Period size: 41 Copynumber: 3.5 Consensus size: 40
11272400 ACCAGTTTGG
* *
11272410 CACCCAGTGCCTCATCGGA-TAATTTGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAATTAA-TTGAAGTAGTAAATTGA
* * * ** * * *
11272450 TACCCAATGTCTCATCGGCTAAACTG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATTAATTGAAGTAGTAAATTGA
*
11272487 CACCCAGTGCCTCATCGAATTAATTCGAAGTAGTAAATTAA
1 CACCCAGTGCCTCATCGAATTAATT-GAAGTAGTAAATTGA
*
11272528 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
11272546 CTCGAATTCG
Statistics
Matches: 73, Mismatches: 18, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
37 26 0.36
38 1 0.01
39 2 0.03
40 17 0.23
41 27 0.37
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGAATTAATTGAAGTAGTAAATTGA
Found at i:11273083 original size:18 final size:19
Alignment explanation
Indices: 11273057--11273092 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
11273047 TAAAATAAAT
*
11273057 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
11273075 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
11273093 AAATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:11273461 original size:18 final size:17
Alignment explanation
Indices: 11273439--11273472 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
11273429 TTAATTGTTT
11273439 TATTATTAT-ATA-ATA
1 TATTATTATAATATATA
11273454 TATTATTATAATATATA
1 TATTATTATAATATATA
11273471 TA
1 TA
11273473 CTAAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 3 0.18
17 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTATTATAATATATA
Found at i:11273465 original size:13 final size:13
Alignment explanation
Indices: 11273442--11273496 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
11273432 ATTGTTTTAT
11273442 TATTA-TATAATA
1 TATTATTATAATA
11273454 TATTATTATAATA
1 TATTATTATAATA
*
11273467 TATATACTA-AATA
1 TAT-TATTATAATA
11273480 TATTTTATTATAATA
1 TA--TTATTATAATA
11273495 TA
1 TA
11273497 CATTAAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
12 5 0.14
13 16 0.44
14 8 0.22
15 7 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
TATTATTATAATA
Found at i:11273503 original size:26 final size:27
Alignment explanation
Indices: 11273451--11273504 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
11273441 TTATTATATA
*
11273451 ATATATTATTATAATATATATACTAAAT
1 ATATATTATTATAATATACATA-TAAAT
*
11273479 ATATTTTATTATAATATACAT-TAAAT
1 ATATATTATTATAATATACATATAAAT
11273505 TTTACATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
28 19 0.79
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
ATATATTATTATAATATACATATAAAT
Found at i:11275168 original size:136 final size:133
Alignment explanation
Indices: 11275002--11275275 Score: 494
Period size: 136 Copynumber: 2.0 Consensus size: 133
11274992 TCCCGACTCA
11275002 GCAAAATTTGTGTAATTCTGTTTTGTTTTAAGTATGACATGTGTCTGGGTTGAGTCAATTTTTGA
1 GCAAAATTTGTGTAATTCTGTTTTGTTTTAAGTATGACATGTGTCTGGGTTGAGTCAATTTTTGA
*
11275067 CATAATATGTGACTTATGAACTTTTGGAGTTGGAATTGGTATTTTTGAAAGTGACTATATGTTTG
66 CATAATATGTGACTTATGAACTTTTGGAGTTGGAATTGGTA-TTTTGAAAGTGAC--TATGTTAG
11275132 AATTGT
128 AATTGT
* *
11275138 GCAAAATTTGTGTAATTCTGTTTTGTTTTAAGTATGACATGTGTCTGGGTTTATTCAATTTTTGA
1 GCAAAATTTGTGTAATTCTGTTTTGTTTTAAGTATGACATGTGTCTGGGTTGAGTCAATTTTTGA
11275203 CATAATATGTGACTTATGAACTTTTGGAGTTGGAATTGGTATTTTGAAAGTGACTATGTTAGAAT
66 CATAATATGTGACTTATGAACTTTTGGAGTTGGAATTGGTATTTTGAAAGTGACTATGTTAGAAT
11275268 TGT
131 TGT
11275271 GCAAA
1 GCAAA
11275276 CTAGGTTGTT
Statistics
Matches: 135, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
133 18 0.13
135 13 0.10
136 104 0.77
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (133 bp):
GCAAAATTTGTGTAATTCTGTTTTGTTTTAAGTATGACATGTGTCTGGGTTGAGTCAATTTTTGA
CATAATATGTGACTTATGAACTTTTGGAGTTGGAATTGGTATTTTGAAAGTGACTATGTTAGAAT
TGT
Found at i:11298982 original size:14 final size:15
Alignment explanation
Indices: 11298957--11298985 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11298947 ATGGTTACTC
11298957 TTTTTAATAATTTTA
1 TTTTTAATAATTTTA
11298972 TTTTTAA-AATTTTA
1 TTTTTAATAATTTTA
11298986 ACTTCATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTTAATAATTTTA
Found at i:11300416 original size:86 final size:86
Alignment explanation
Indices: 11300189--11300404 Score: 224
Period size: 86 Copynumber: 2.5 Consensus size: 86
11300179 GTTTAAAGTG
* * * * * *
11300189 TAAAAAAAAACCCT-AAACTTTTTCAAAAAAAGTAATTAAGTCTTTGTTTTCTTTTCACTTAATT
1 TAAAAAAATACCCTCAAACTTTTTAAAAAAAAGCAATTAAG-C-CTCTTTT-TTTTCACTCAATT
*
11300253 AGATACTTAAACTTTCAAAATGCA
63 AGATACTTAAAATTTCAAAATGCA
** ***
11300277 TAAAAAAATGTCCTC-AACTTAAAAAAAGAAGAAGCAATTAAGCCTCTTTTTTTTCACTCAATT-
1 TAAAAAAATACCCTCAAACTTTTTAAAA-AA-AAGCAATTAAGCCTCTTTTTTTTCACTCAATTA
*
11300340 GGTACTTAAAATTTCAAAATGCA
64 GATACTTAAAATTTCAAAATGCA
* *
11300363 T-AAAAAATACCCTCAAACTTTTTTAAAAAAAGCAAGTAAGCC
1 TAAAAAAATACCCTCAAACTTTTTAAAAAAAAGCAATTAAGCC
11300405 CCTACTTTTT
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
84 12 0.12
85 13 0.12
86 30 0.29
87 12 0.12
88 24 0.23
89 3 0.03
90 10 0.10
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.32
Consensus pattern (86 bp):
TAAAAAAATACCCTCAAACTTTTTAAAAAAAAGCAATTAAGCCTCTTTTTTTTCACTCAATTAGA
TACTTAAAATTTCAAAATGCA
Found at i:11300580 original size:10 final size:10
Alignment explanation
Indices: 11300565--11300702 Score: 55
Period size: 10 Copynumber: 14.4 Consensus size: 10
11300555 GGCATGTGGC
11300565 AAAAAATTAT
1 AAAAAATTAT
11300575 AAAAAA--AT
1 AAAAAATTAT
*
11300583 AATAAATGT-T
1 AAAAAAT-TAT
11300593 ATAAAAATTA-
1 A-AAAAATTAT
**
11300603 ATAAATTTTAAT
1 A-AAAAATT-AT
**
11300615 AAAAAGGTA-
1 AAAAAATTAT
*
11300624 AAAATATT-T
1 AAAAAATTAT
11300633 AA-AAATTA-
1 AAAAAATTAT
11300641 A-AAAA-TAT
1 AAAAAATTAT
*
11300649 ATAAAAATCAT
1 A-AAAAATTAT
* *
11300660 AAAATATTGT
1 AAAAAATTAT
*
11300670 AAAAATTTAT
1 AAAAAATTAT
*
11300680 -AAAAATCAT
1 AAAAAATTAT
11300689 AAAAAATTAT
1 AAAAAATTAT
11300699 AAAA
1 AAAA
11300703 TGCATCAAAA
Statistics
Matches: 92, Mismatches: 21, Indels: 30
0.64 0.15 0.21
Matches are distributed among these distances:
7 2 0.02
8 16 0.17
9 14 0.15
10 46 0.50
11 13 0.14
12 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:11300596 original size:20 final size:20
Alignment explanation
Indices: 11300571--11300619 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
11300561 TGGCAAAAAA
11300571 TTATAAAAAAATAATAAATG
1 TTATAAAAAAATAATAAATG
* *
11300591 TTAT-AAAAATTAATAAATT
1 TTATAAAAAAATAATAAATG
11300610 TTAATAAAAA
1 TT-ATAAAAA
11300620 GGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 15 0.60
20 6 0.24
21 4 0.16
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
TTATAAAAAAATAATAAATG
Found at i:11300663 original size:19 final size:19
Alignment explanation
Indices: 11300622--11300702 Score: 87
Period size: 18 Copynumber: 4.3 Consensus size: 19
11300612 AATAAAAAGG
*
11300622 TAAAAATATTTAAAAATTA
1 TAAAAATATATAAAAATTA
*
11300641 -AAAAATATATAAAAATCA
1 TAAAAATATATAAAAATTA
*
11300659 T-AAAATATTGTAAAAATTTA
1 TAAAAATA-TATAAAAA-TTA
11300679 TAAAAATCATA-AAAAATTA
1 TAAAAAT-ATATAAAAATTA
11300698 TAAAA
1 TAAAA
11300703 TGCATCAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
18 22 0.42
19 15 0.29
20 8 0.15
21 6 0.12
22 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (19 bp):
TAAAAATATATAAAAATTA
Found at i:11300674 original size:11 final size:10
Alignment explanation
Indices: 11300622--11300702 Score: 57
Period size: 10 Copynumber: 8.5 Consensus size: 10
11300612 AATAAAAAGG
11300622 TAAAAATATT-
1 TAAAAAT-TTA
11300632 TAAAAA-TTA
1 TAAAAATTTA
*
11300641 -AAAAATATA
1 TAAAAATTTA
*
11300650 TAAAAA-TCA
1 TAAAAATTTA
*
11300659 T-AAAATATTG
1 TAAAAAT-TTA
11300669 TAAAAATTTA
1 TAAAAATTTA
*
11300679 TAAAAA-TCA
1 TAAAAATTTA
*
11300688 TAAAAAATTA
1 TAAAAATTTA
11300698 TAAAA
1 TAAAA
11300703 TGCATCAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
8 11 0.20
9 12 0.21
10 28 0.50
11 5 0.09
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (10 bp):
TAAAAATTTA
Found at i:11300674 original size:29 final size:29
Alignment explanation
Indices: 11300633--11300702 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
11300623 AAAAATATTT
11300633 AAAAATTA-AAAAATATATAAAAATCATA
1 AAAAATTATAAAAATATATAAAAATCATA
* * *
11300661 AAATATTGTAAAAATTTATAAAAATCATA
1 AAAAATTATAAAAATATATAAAAATCATA
11300690 AAAAATTATAAAA
1 AAAAATTATAAAA
11300703 TGCATCAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 6 0.17
29 30 0.83
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (29 bp):
AAAAATTATAAAAATATATAAAAATCATA
Found at i:11300712 original size:20 final size:19
Alignment explanation
Indices: 11300633--11300715 Score: 73
Period size: 20 Copynumber: 4.3 Consensus size: 19
11300623 AAAAATATTT
11300633 AAAAATTA-AAAAAT-ATA
1 AAAAATTATAAAAATCATA
* **
11300650 TAAAAATCATAAAATATTGTA
1 -AAAAATTATAAAA-ATCATA
*
11300671 AAAATTTATAAAAATCATA
1 AAAAATTATAAAAATCATA
11300690 AAAAATTAT-AAAATGCATCA
1 AAAAATTATAAAAAT-CAT-A
11300710 AAAAAT
1 AAAAAT
11300716 ATTTTAACCA
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
18 12 0.23
19 19 0.36
20 20 0.38
21 2 0.04
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAATTATAAAAATCATA
Found at i:11301003 original size:19 final size:19
Alignment explanation
Indices: 11300886--11301003 Score: 55
Period size: 19 Copynumber: 6.2 Consensus size: 19
11300876 GGTACAGTAA
* *
11300886 TTTATATTTTTTTACAAAT
1 TTTATAATTTTTTACAACT
**
11300905 TTTAT-ATTTTTTACATTTT
1 TTTATAATTTTTTACA-ACT
*
11300924 TTTATAATTTTCTTACGACT
1 TTTATAATTTT-TTACAACT
* * **
11300944 TTATAAAATTTTATA-ATTT
1 TT-TATAATTTTTTACAACT
* * *
11300963 TTTCTATATTTCTATA-TA-T
1 TTTATA-ATTT-TTTACAACT
11300982 TTTATAATTTTTTACAACT
1 TTTATAATTTTTTACAACT
11301001 TTT
1 TTT
11301004 GTAAAATATA
Statistics
Matches: 73, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
17 3 0.04
18 16 0.22
19 28 0.38
20 14 0.19
21 12 0.16
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTATAATTTTTTACAACT
Found at i:11301102 original size:22 final size:21
Alignment explanation
Indices: 11301066--11301110 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
11301056 TTTAATAAAA
* *
11301066 ATTAAACATTTTTATATTTTTT
1 ATTAAAAATTATTAT-TTTTTT
11301088 ATTAAAAATTATTATTTTTTT
1 ATTAAAAATTATTATTTTTTT
11301109 AT
1 AT
11301111 AAATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTAAAAATTATTATTTTTTT
Found at i:11301105 original size:19 final size:22
Alignment explanation
Indices: 11301083--11301130 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 22
11301073 ATTTTTATAT
11301083 TTTTTATTA-AAAATT-A-TTA
1 TTTTTATTATAAAATTAATTTA
*
11301102 TTTTT-TTATAAATTTAATTTA
1 TTTTTATTATAAAATTAATTTA
11301123 TTTTTATT
1 TTTTTATT
11301131 TTTTATCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 10 0.42
20 1 0.04
21 8 0.33
22 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTATTATAAAATTAATTTA
Found at i:11301106 original size:29 final size:28
Alignment explanation
Indices: 11301042--11301112 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 28
11301032 CGATATTTGT
*
11301042 AATTTTTTCTAATTTTTAATAAAAATTA
1 AATTTTTTATAATTTTTAATAAAAATTA
* * *
11301070 AACATTTTTATATTTTTTATTAAAAATTA
1 AA-TTTTTTATAATTTTTAATAAAAATTA
*
11301099 TTATTTTTTTATAA
1 --AATTTTTTATAA
11301113 ATTTAATTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
28 2 0.06
29 22 0.67
30 8 0.24
31 1 0.03
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (28 bp):
AATTTTTTATAATTTTTAATAAAAATTA
Found at i:11304052 original size:49 final size:49
Alignment explanation
Indices: 11303973--11304101 Score: 204
Period size: 49 Copynumber: 2.6 Consensus size: 49
11303963 GATAATAACA
* * * *
11303973 TGCCAAAGCCATGTCCCAGACATGGCCTTACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTAC
*
11304022 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGATGTTTCCTGTAC
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTAC
*
11304071 TGCCAATGTCATATCCCAGATATGGTCTTAC
1 TGCCAATGCCATATCCCAGATATGGTCTTAC
11304102 CTGAGAGTTC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATGTTTCCTGTAC
Found at i:11306455 original size:23 final size:20
Alignment explanation
Indices: 11306421--11306474 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
11306411 TAGCAATTTT
*
11306421 TAAATATTTTTATCATTTTAA
1 TAAATATTTTTAT-AGTTTAA
11306442 TAAATATATATTTATAGTTTAA
1 TAAATAT-T-TTTATAGTTTAA
*
11306464 T-GATATTTTTA
1 TAAATATTTTTA
11306475 AAATTTCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 4 0.14
20 1 0.03
21 11 0.38
22 8 0.28
23 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (20 bp):
TAAATATTTTTATAGTTTAA
Found at i:11311295 original size:26 final size:26
Alignment explanation
Indices: 11311266--11311321 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
11311256 TTTTTGATAA
* * *
11311266 AAATGTGTTTTAAGGATTAAATTGTG
1 AAATGTGTATGAAGGATCAAATTGTG
* *
11311292 AAATTTGTATGAAGGGTCAAATTGTG
1 AAATGTGTATGAAGGATCAAATTGTG
11311318 AAAT
1 AAAT
11311322 AAATTGAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.38
Consensus pattern (26 bp):
AAATGTGTATGAAGGATCAAATTGTG
Found at i:11321793 original size:73 final size:74
Alignment explanation
Indices: 11321711--11321858 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
11321701 TTCTATTTTA
11321711 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTA-TTTTCACCT
1 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
11321775 CAAAACATG
66 CAAAACATG
11321784 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
1 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
11321849 CAAAACATG
66 CAAAACATG
11321858 A
1 A
11321859 GAAATACAAC
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 55 0.74
74 19 0.26
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (74 bp):
ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
CAAAACATG
Found at i:11324714 original size:45 final size:45
Alignment explanation
Indices: 11324650--11324843 Score: 271
Period size: 45 Copynumber: 4.3 Consensus size: 45
11324640 GAATGGCATG
* **
11324650 AAATTAAGGAAGCATTTGACCAACATCATGAATAATTTGTGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
11324695 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * *
11324740 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * * *
11324785 AATTTAAGGAAGTATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
11324830 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
11324844 CCATGGCCGA
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Found at i:11325569 original size:70 final size:64
Alignment explanation
Indices: 11325461--11325603 Score: 214
Period size: 70 Copynumber: 2.1 Consensus size: 64
11325451 TGGTTTTGTA
*
11325461 AAAAAAAAATCAAAAAAAAAATTTTACGGTCTAGGCGCGGACGAAAAGAACGTGAAAGATCTGT
1 AAAAAAAAATCAAAAAAAAAATTTTACGGTCTAGGCGCGGACGAAAAGAACGTGAAAGATCCGT
*
11325525 ATAAAAAAATCAAAAAAAAAAAATTTTGCCTACGGTCTAGGCGCGGACGAAAAGAACGTGAAAGA
1 AAAAAAAAATC--AAAAAAAAAA-TTT---TACGGTCTAGGCGCGGACGAAAAGAACGTGAAAGA
11325590 TCCGT
60 TCCGT
11325595 AAAAAAAAA
1 AAAAAAAAA
11325604 AGAGTCTGGA
Statistics
Matches: 70, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
64 10 0.14
66 10 0.14
67 3 0.04
70 47 0.67
ACGTcount: A:0.52, C:0.13, G:0.19, T:0.16
Consensus pattern (64 bp):
AAAAAAAAATCAAAAAAAAAATTTTACGGTCTAGGCGCGGACGAAAAGAACGTGAAAGATCCGT
Found at i:11325768 original size:20 final size:19
Alignment explanation
Indices: 11325743--11325787 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
11325733 ATTCGGTATT
*
11325743 AAAAAAAAGAGAAATTCAAA
1 AAAAAAAACAG-AATTCAAA
* *
11325763 AAAAAAATCAGAATTTAAA
1 AAAAAAAACAGAATTCAAA
11325782 AAAAAA
1 AAAAAA
11325788 GTGATTGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (19 bp):
AAAAAAAACAGAATTCAAA
Found at i:11331191 original size:45 final size:45
Alignment explanation
Indices: 11331123--11331316 Score: 271
Period size: 45 Copynumber: 4.3 Consensus size: 45
11331113 GAACGGCATG
* **
11331123 AAATTAAGGAAGCATTTGTCCAACATCATGCATAATTTGTGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* *
11331168 AAATTAAGGAAGCATTTGACCAACAGCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * *
11331213 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * *
11331258 AATTTAAGGAAGCATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
11331303 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
11331317 CCATGGCCGA
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Found at i:11343402 original size:6 final size:6
Alignment explanation
Indices: 11343393--11343418 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11343383 TTTTCTTTTT
11343393 TGAAAA TGAAAA TGAAAA TGAAAA TG
1 TGAAAA TGAAAA TGAAAA TGAAAA TG
11343419 GCTTTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (6 bp):
TGAAAA
Found at i:11347564 original size:14 final size:14
Alignment explanation
Indices: 11347547--11347586 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
11347537 CCATTATATT
11347547 AATT-ATTTTATTAA
1 AATTAATTTT-TTAA
11347561 AATTAATTTTTT-A
1 AATTAATTTTTTAA
11347574 AA-TAATTTTTTAA
1 AATTAATTTTTTAA
11347587 GTGAGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 9 0.38
13 4 0.17
14 6 0.25
15 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATTAATTTTTTAA
Found at i:11348163 original size:20 final size:19
Alignment explanation
Indices: 11348127--11348165 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
11348117 AATATTTTTT
*
11348127 TATTTTTTTATTTTTAAAA
1 TATTTTTGTATTTTTAAAA
*
11348146 TATTTTTGTGTTTATTAAAA
1 TATTTTTGTATTT-TTAAAA
11348166 ATCGGGTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (19 bp):
TATTTTTGTATTTTTAAAA
Found at i:11374409 original size:73 final size:74
Alignment explanation
Indices: 11374327--11374474 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
11374317 TTCTATTTTA
11374327 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTA-TTTTCACCT
1 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
11374391 CAAAACATG
66 CAAAACATG
11374400 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
1 ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
11374465 CAAAACATG
66 CAAAACATG
11374474 A
1 A
11374475 GAAATACAAC
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 55 0.74
74 19 0.26
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (74 bp):
ATTTAACGTTCAGAGTTTAAGGTTTAAGGTTTAAGGATTAAAATTTATTTAATTATTTTTCACCT
CAAAACATG
Found at i:11377375 original size:45 final size:45
Alignment explanation
Indices: 11377258--11377448 Score: 262
Period size: 44 Copynumber: 4.3 Consensus size: 45
11377248 GAATGGCATG
* *
11377258 AAATTAAGGAAGCATTTGACCAACATCATGAATAATT-GTGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
11377302 AAATTAAGGAAGCA-TTGACCAACATCATGCATAATTCATGGAAG
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* *
11377346 AATTTGAGGAAGCATTTGACCAACATCATGCATAATTCATGGAA-
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
* * * * *
11377390 GAATTAAGGAAGTATTTGGCCAACATCATGCATAATTTAAGGAAC
1 AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
*
11377435 AAATTGAGGAAGCA
1 AAATTAAGGAAGCA
11377449 CCATGGCCGA
Statistics
Matches: 129, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
43 21 0.16
44 68 0.53
45 40 0.31
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (45 bp):
AAATTAAGGAAGCATTTGACCAACATCATGCATAATTCATGGAAC
Done.